Citrus Sinensis ID: 007229
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 612 | 2.2.26 [Sep-21-2011] | |||||||
| P90587 | 601 | 66 kDa stress protein OS= | N/A | no | 0.952 | 0.970 | 0.417 | 1e-131 | |
| P54686 | 597 | WD repeat-containing prot | yes | no | 0.964 | 0.988 | 0.382 | 1e-120 | |
| Q9VU68 | 608 | Actin-interacting protein | yes | no | 0.959 | 0.965 | 0.372 | 1e-115 | |
| O93277 | 609 | WD repeat-containing prot | yes | no | 0.973 | 0.978 | 0.360 | 1e-110 | |
| Q6PAX7 | 607 | WD repeat-containing prot | N/A | no | 0.968 | 0.976 | 0.351 | 1e-105 | |
| O75083 | 606 | WD repeat-containing prot | yes | no | 0.968 | 0.978 | 0.356 | 1e-105 | |
| Q6DIF4 | 607 | WD repeat-containing prot | yes | no | 0.968 | 0.976 | 0.350 | 1e-105 | |
| Q2KJH4 | 606 | WD repeat-containing prot | yes | no | 0.972 | 0.981 | 0.348 | 1e-104 | |
| Q5RKI0 | 606 | WD repeat-containing prot | yes | no | 0.970 | 0.980 | 0.347 | 1e-104 | |
| O88342 | 606 | WD repeat-containing prot | yes | no | 0.970 | 0.980 | 0.345 | 1e-104 |
| >sp|P90587|WD66_PHYPO 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust.
Identities = 257/616 (41%), Positives = 373/616 (60%), Gaps = 33/616 (5%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
L Y+ +P+T RG+ +++ G+PK + LY G +V+IR + P + Y EH P TVA
Sbjct: 5 LKTIYSPSPATTRGKPVVLGGDPKGNNFLYTCGNAVIIRNIKNPNQADIYYEHAQPATVA 64
Query: 66 RYSPNGEWIASADVSGSVRIWGTHN-GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
+Y+P+G +IAS D+SG++RIW T LK E KVLSG I D+ WS D R+V GDGK
Sbjct: 65 KYAPSGFYIASGDLSGTLRIWDTTQLEHPLKIELKVLSGPIADIAWSADSQRLVVVGDGK 124
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
+ F A +WDSG +VG+ GHS+ + SC+FK TRPFR+ T EDF N++EGPPFKFK
Sbjct: 125 ER-FGAAILWDSGASVGEITGHSKAIASCDFKATRPFRVITGAEDFQANWFEGPPFKFKH 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS-SEDGHHGSIYAVSW 243
+ +EH+ F+ C+RFSPDG K+++V D+KG I DGK+GEK+G + D H IY+ SW
Sbjct: 184 AFKEHTRFLTCVRFSPDGEKVLTVGLDKKGFILDGKTGEKVGALAGGADAHALGIYSCSW 243
Query: 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS 303
SPD KKVLTVSADKSAK+W+ G ++ TFA VE L+G LWQ D L+ V+
Sbjct: 244 SPDSKKVLTVSADKSAKIWD-----DKGTLLTTFA--FEGGVESQLLGSLWQGDTLLAVN 296
Query: 304 LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW-------- 355
L G I +N + GH K V++L A + + + S SYDG I++W
Sbjct: 297 LNGDIFSLDQNNPKTPARTLKGHNKLVTSL-AFDTASKALYSGSYDGVILQWNLETGIAV 355
Query: 356 -IRGVGYSSKLEKKYDARIKCLAAVE-EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413
I G G++S + + A V+ + + D+ PL + A+ + SQ
Sbjct: 356 PIAGTGHTSSVTQ---------AVVQGNKLVSVSVDDTTRFTPLNPPQYA-AQGAKLDSQ 405
Query: 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGK 473
P +++A ++A+V T + V++L KV S + + T ++ DGSE VG ++
Sbjct: 406 PQSVAVA-QGKDIAVVVTLNSVVVLQGEKVASTTAVKYQPTVVRVSVDGSEVAVGAKDNS 464
Query: 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533
+HIYS+SG TL+E+ VL HRG +T I YSPD FASAD NR+ VWD+ S+++K+
Sbjct: 465 IHIYSLSGTTLSEQAVLSGHRGFLTAIAYSPDGKHFASADQNRDIFVWDKASRKIKVEGW 524
Query: 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDF 593
++H AR+ LAW+ +S + TGS+D+ V ++ + +P S I IKNAH GGV V ++D+
Sbjct: 525 VYHNARVTSLAWNSNSNNIVTGSLDSHVYVWSVSEP-SKHIAIKNAHRGGVNAVLWVDEH 583
Query: 594 NVVSSGEDACIRVWRL 609
V S+G D I+ W +
Sbjct: 584 TVASAGLDCSIKTWTI 599
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Associated with the process of cyst formation. Physarum polycephalum (taxid: 5791) |
| >sp|P54686|WD42_DICDI WD repeat-containing protein 2 homolog OS=Dictyostelium discoideum GN=wdpA PE=2 SV=2 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/611 (38%), Positives = 365/611 (59%), Gaps = 21/611 (3%)
Query: 4 VHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVT 63
V L A P+T RG+ + I+G+PK + I+Y +G S++IR + P+ + Y EH T
Sbjct: 3 VTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMVADIYYEHPCQTT 62
Query: 64 VARYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD 122
VA+Y+P+G +IAS DV G++RIW T +LK +KVL+G I D+ W+ D R+V GD
Sbjct: 63 VAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAWTSDNQRLVVVGD 122
Query: 123 GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182
GK + F A +WDSG++ G+ GHS+ +LSC+ K TRPFR AT EDF VN++EGPPFKF
Sbjct: 123 GKER-FGAAILWDSGSSCGEITGHSKMILSCDIKSTRPFRAATGSEDFAVNWFEGPPFKF 181
Query: 183 K--LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240
+ ++ + + FVNC+RFSPDG+KL++V +D+K +YDGK+GEK+ E + H G IY
Sbjct: 182 QKNIAAGDFTRFVNCVRFSPDGNKLVTVGADKKAFVYDGKTGEKLIELNPAQQHTGGIYG 241
Query: 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300
SWS D +VLT SADKS K+W D + G+ I +F + V D +GCLW D L+
Sbjct: 242 CSWSADNNRVLTASADKSCKIW----DTTTGQCINSFTFGSD--VNDQQLGCLWFGDSLL 295
Query: 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360
+V+L G IS + ++ K GH K V T+ A + ++ S+SYD ++++W G
Sbjct: 296 SVNLAGEISTLNLDDVAKPSRVIKGHNKLVGTI-AFDKNAGSLYSASYDASLLQWDLSTG 354
Query: 361 YSSKLE-KKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419
++ + +I + + + T D+ V + + G++ +D +Q ++
Sbjct: 355 LATNFTGPAHKNQITSIKINGDQLITCAMDDSVKISSISKKTYGESIGVDSPAQ----AV 410
Query: 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSI 479
A S + VS ++ + ++ K++S+ + T+ AI + +E VGG++ K+H++++
Sbjct: 411 AFSGDVVVAVSMKT-IYVIKGGKIVSQTAATWEPTSVAI--NDTEVSVGGKDNKIHVFTL 467
Query: 480 SGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR 539
SGN LT L+ HRGAIT + YSP AS NRE IVW KE K + HTAR
Sbjct: 468 SGNNLTASHTLDNHRGAITDLSYSPCGKYLASGCSNREVIVWS--GKEAKSKGWVNHTAR 525
Query: 540 INCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSG 599
IN +AWS S VA+ S+D+ + I+ + P +S + +KN+HLGGV V + + + S+G
Sbjct: 526 INAVAWSNDSKFVASASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNEIFSAG 585
Query: 600 EDACIRVWRLA 610
+ I++W ++
Sbjct: 586 NEGAIKIWNVS 596
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Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9VU68|WDR1_DROME Actin-interacting protein 1 OS=Drosophila melanogaster GN=flr PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/604 (37%), Positives = 355/604 (58%), Gaps = 17/604 (2%)
Query: 10 YACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSP 69
YA P T+RG+ I++ +PK LY NG SV+IR ++ P + Y EH V VA+YSP
Sbjct: 15 YATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAVNVAKYSP 74
Query: 70 NGEWIASADVSGSVRIWGTHNG-FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128
+G +IAS D SG +RIW T N +LKNEF+ ++G I D+ WSPD RIVA G+G+ + F
Sbjct: 75 SGFYIASGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVGEGRER-F 133
Query: 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE 188
FM ++GT+VG+ G S+ + S +F+P RPFRI T ED + +EGPPFKFK++ ++
Sbjct: 134 GHVFMSETGTSVGEISGQSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQD 193
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
HS FV +R+SPDG S D K +YDG S E +GEF S H G +YA++W PD
Sbjct: 194 HSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSP-AHKGGVYALAWKPDST 252
Query: 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308
++LT S DK+ ++W + ++ F T+ V+D V CLWQ D+LITVSL G+I
Sbjct: 253 QLLTCSGDKTCRLWTV----ESRELVSEFVMGTT--VDDQQVSCLWQGDNLITVSLSGVI 306
Query: 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE-K 367
+ + ++ K GH K ++ L L + TI + S+DG + W G G + ++
Sbjct: 307 TYLNVADPSKPLRVVKGHNKPITVL-GLSDDRSTIYTGSHDGVVTNWNSGSGTNDRITGT 365
Query: 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELA 427
+ +I +AA + ++T G D+ + + + EG + + QP L++ + +A
Sbjct: 366 GHGNQINGIAAWGDFVYTCGIDDSLRQFSV-EGNSYTDYVVKLNCQPRGLAILRNENIIA 424
Query: 428 LVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE 487
L + ++ D K+ S + + + ++ A+ D S+ VGG + KLHIY++ G L +
Sbjct: 425 LACIKELTLVQDQKKIFS-LPIKYEASSIAVNADTSDVAVGGDDQKLHIYTLKGGVLEPK 483
Query: 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNML-FHTARINCLAWS 546
+ L+ H GA+T + YSPD+ + D +R+ +++ + N FH+AR+N +AWS
Sbjct: 484 VELD-HLGAVTDVSYSPDLKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVAWS 542
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSSGEDACIR 605
P+S +VA+GS+DT +II+ + PA I IKNAH + + ++D+ V+S+G+D +
Sbjct: 543 PNSLLVASGSLDTTIIIWSVANPAKHTI-IKNAHPQSQITRLVWLDNNTVISTGQDCNTK 601
Query: 606 VWRL 609
VW +
Sbjct: 602 VWHV 605
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Essential for organismal and cell viability. Required for the development of normal wing cell planar polarity. Drosophila melanogaster (taxid: 7227) |
| >sp|O93277|WDR1_CHICK WD repeat-containing protein 1 OS=Gallus gallus GN=WDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/610 (36%), Positives = 342/610 (56%), Gaps = 14/610 (2%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
+ + +A P ERG +I G+PK + LY NG+ V+IR +D P + Y EH + V VA
Sbjct: 7 IKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVVIRNIDNPAIADIYTEHAHQVVVA 66
Query: 66 RYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
+Y+P+G +IAS DVSG +RIW T +LK E++ +G+I DL W+ D RI G+G+
Sbjct: 67 KYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDLAWTEDSKRIAVVGEGR 126
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
K F F+WDSG++VG+ GH++ + S + K TRP+R+AT +D F+EGPPFKFK
Sbjct: 127 EK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFKFKF 185
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ +H+ FVNC+RFSPDG++ + S+D + IYDGK+GEK+ H G IYA+SWS
Sbjct: 186 TLSDHTRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGGKAHDGGIYAISWS 245
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PD ++L+ S DK+AK+W++ V+ TF + + V D +GCLWQ DHL+++SL
Sbjct: 246 PDSSQLLSASGDKTAKIWDV----GANSVVSTF--NMGSNVLDQQLGCLWQKDHLLSLSL 299
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT-ILSSSYDGAIIKWIRGVGYSS 363
G I+ +N DK GH K++ LT K ++ I S S DG I W G +
Sbjct: 300 SGYINYLDKNNPDKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSNDGHINYWDSDTGEND 359
Query: 364 KLEKKYDARIKCLAAVEEV--IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421
K AV+E+ + T D+ V L + + + + + QP L++
Sbjct: 360 GFSGKGHTNQVSRMAVDEMDQLVTCSMDDTVRYTNLSKRDYSGQDAVKMDVQPKCLAVGP 419
Query: 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG 481
+ L + V++ D K + DLG+ A A+ P G VGG +G + +YSI G
Sbjct: 420 GGYTVVLCIGQI-VLMKDKKKCFAIDDLGYEPEAVAVHPGGGSVAVGGTDGNVRLYSIQG 478
Query: 482 NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARIN 541
+L + + +G +T + YS D + A D N+ V+ V+ N H A++
Sbjct: 479 TSLKSDDKTLEAKGPVTDLAYSHDGAFLAVCDANKVVTVFSVPDGYVEHNVFYGHHAKVV 538
Query: 542 CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSSGE 600
C+AWSP + A+G +D V ++ + P +RI I +AH L V G+A++D+ +V++
Sbjct: 539 CIAWSPDNEHFASGGMDMMVYVWTVSDP-ETRIKIPDAHRLHHVSGLAWLDEHTLVTTSH 597
Query: 601 DACIRVWRLA 610
DA ++ W ++
Sbjct: 598 DASVKEWSIS 607
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Gallus gallus (taxid: 9031) |
| >sp|Q6PAX7|WDR1B_XENLA WD repeat-containing protein 1-B OS=Xenopus laevis GN=wdr1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/611 (35%), Positives = 339/611 (55%), Gaps = 18/611 (2%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
+ + +A P ERG +I+G+PK + LY NG+SV+IR +D P + Y EH + V VA
Sbjct: 5 IKKVFASLPQVERGVAKIIAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQVVVA 64
Query: 66 RYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
RY+P+G +IAS D SG +RIW T +LK E++ +G+I D+ W+ D RI G+G+
Sbjct: 65 RYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGR 124
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
K F F+WD+G++VG+ G+ + + S + K TRP+R+ T +D F+EGPPFKFK
Sbjct: 125 EK-FGSVFLWDTGSSVGEIIGNIKVINSVDIKQTRPYRLVTGSDDNCCAFFEGPPFKFKF 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ +HS FVNC+RFSPDGS+L S +D + +YDGK+GEK+ H G IYAVSWS
Sbjct: 184 TMSDHSRFVNCVRFSPDGSRLASAGADGQIFLYDGKTGEKVCSLGGSKAHDGGIYAVSWS 243
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PDG ++L+ S DK+AK+W++ + + TF + + V D +GCLWQ D+L++VSL
Sbjct: 244 PDGTQLLSASGDKTAKIWDV----AANSAVTTF--NLGSDVLDQQLGCLWQKDYLLSVSL 297
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS-QQTILSSSYDGAIIKWIRGVGYSS 363
G I+ +N K GH K++ +T K + TI + S+DG I W G ++
Sbjct: 298 SGYINYLDKNNPAKPFRIIKGHNKSIQCMTVDKSDGRSTIYTGSHDGHINYWDAETGENN 357
Query: 364 KLEKKYDARIKCLAAVE----EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419
K +++++ + T D+ + L + +E + + QP +++
Sbjct: 358 TFTGK--GHTNQVSSMDLDGSSQLITCSMDDTLRYTNLISKDYSSSESVKMDVQPKCVAV 415
Query: 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSI 479
S + V V+L D KV + L + A AI VGG +GK+H+YSI
Sbjct: 416 G-SGGYVVTVCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVSVGGADGKVHLYSI 474
Query: 480 SGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR 539
GN+L +E +GA+T + YSPD + A D N+ V+ + N+ H A+
Sbjct: 475 QGNSLKDEGKTLPAKGAVTDLAYSPDGAFLAVTDANKVVTVFSVADGYSEHNSYYGHHAK 534
Query: 540 INCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSS 598
+AWSP + A+ +D V ++ + P +RI + +AH L V +A++D+ + +
Sbjct: 535 ALSVAWSPDNEHFASSGMDMMVYVWTLSDP-DTRIKMPDAHRLHHVSSLAWLDENTLATV 593
Query: 599 GEDACIRVWRL 609
DAC++ W +
Sbjct: 594 SHDACVKQWTV 604
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin. Xenopus laevis (taxid: 8355) |
| >sp|O75083|WDR1_HUMAN WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/611 (35%), Positives = 341/611 (55%), Gaps = 18/611 (2%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
+ + +A P ERG +I G+PK + LY NG+ V++R +D P + Y EH + V VA
Sbjct: 5 IKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQVVVA 64
Query: 66 RYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
+Y+P+G +IAS DVSG +RIW T +LK E++ +G+I D+ W+ D RI G+G+
Sbjct: 65 KYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGR 124
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
K F F+WDSG++VG+ GH++ + S + K +RP+R+AT +D F+EGPPFKFK
Sbjct: 125 EK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKF 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ +HS FVNC+RFSPDG++ + S+D + IYDGK+GEK+ H G IYA+SWS
Sbjct: 184 TIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAISWS 243
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PD +L+ S DK++K+W++ S V+ TF ++ V D +GCLWQ DHL++VSL
Sbjct: 244 PDSTHLLSASGDKTSKIWDV----SVNSVVSTFPMGST--VLDQQLGCLWQKDHLLSVSL 297
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT-ILSSSYDGAIIKWIRGVGYSS 363
G I+ +N K GH K++ LT K ++ I S S+DG I W G +
Sbjct: 298 SGYINYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGEND 357
Query: 364 KLEKKYDARIKCLAAVEE--VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421
K V+E + + D+ V L + + + QP +A+
Sbjct: 358 SFAGKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQP--KCVAV 415
Query: 422 SSPELALVSTESGVILL-DSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSIS 480
A+V ++LL D K S + G+ A+ P G +GG +G + +YSI
Sbjct: 416 GPGGYAVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSIL 475
Query: 481 GNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF-HTAR 539
G TL +E L + +G +T + YS D + A D ++ V+ V+ NN+ + H A+
Sbjct: 476 GTTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVF-SVADGYSENNVFYGHHAK 534
Query: 540 INCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSS 598
I CLAWSP + A+G +D V ++ + P +R+ I++AH L V +A++D+ +V++
Sbjct: 535 IVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETRVKIQDAHRLHHVSSLAWLDEHTLVTT 593
Query: 599 GEDACIRVWRL 609
DA ++ W +
Sbjct: 594 SHDASVKEWTI 604
|
Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Homo sapiens (taxid: 9606) |
| >sp|Q6DIF4|WDR1_XENTR WD repeat-containing protein 1 OS=Xenopus tropicalis GN=wdr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/611 (35%), Positives = 336/611 (54%), Gaps = 18/611 (2%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
L + +A P ERG +I+G+PK + LY NG+SV+IR ++ P + Y EH +PV VA
Sbjct: 5 LKKVFASLPQVERGVAKIITGDPKGNNFLYTNGKSVIIRNIENPAIADIYTEHAHPVVVA 64
Query: 66 RYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
RY+P+G +IAS D SG +RIW T +LK E++ +G+I D+ W+ D RI G+G+
Sbjct: 65 RYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGR 124
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
K F F+WD+G++VG+ G+ + + S + K TRP+R+ T +D F+EGPPFKFK
Sbjct: 125 EK-FGSVFLWDTGSSVGEISGNIKVINSVDIKQTRPYRLVTGSDDNCCAFFEGPPFKFKF 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ +HS FVNC+RFSPDGS+L S +D + +YDGK+GEK+G H G IYAVSWS
Sbjct: 184 TMADHSRFVNCVRFSPDGSRLASAGADGQIFLYDGKTGEKVGNLGGSKAHDGGIYAVSWS 243
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
D ++L+ S DK+AK+W++ + + TF T V D +GCLWQ D+L++VSL
Sbjct: 244 ADSTQLLSASGDKTAKIWDV----AANSAVTTFHLGTE--VLDQQLGCLWQKDYLLSVSL 297
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS-QQTILSSSYDGAIIKWIRGVG--- 360
G I+ +N + GH K++ +T + TI + S+DG I W G
Sbjct: 298 SGYINYLDKNNPSRPLRVIKGHNKSIQCMTVHNSDGRSTIYTGSHDGHINYWDAETGEND 357
Query: 361 -YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419
++ K +R+ ++ + + T D+ V L + +E + + QP +++
Sbjct: 358 TFTGKGHTNQVSRMDLDSSNQ--LITCSMDDTVRYTSLTSKDYSSSESVKMDVQPKCVAV 415
Query: 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSI 479
S + + V+L D KV + L + A AI VGG +G +H+YSI
Sbjct: 416 G-SGGYVVTLCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVAVGGVDGNVHLYSI 474
Query: 480 SGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR 539
GN+L +E +GA+T + YS D + A D N+ V++ + N H A+
Sbjct: 475 QGNSLKDEGKSLPVKGAVTDLAYSHDGAFLAVTDANKVVTVFNVADGYSEQNVYYGHHAK 534
Query: 540 INCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSS 598
+AWSP + A+ +D V ++ + P +RI I +AH L V +A++D+ + +
Sbjct: 535 AVSVAWSPDNEHFASSGMDMMVYVWTLSDP-DARIKIPDAHRLHHVSSLAWLDEHTLATV 593
Query: 599 GEDACIRVWRL 609
DAC++ W +
Sbjct: 594 SHDACVKQWTV 604
|
Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin. Xenopus tropicalis (taxid: 8364) |
| >sp|Q2KJH4|WDR1_BOVIN WD repeat-containing protein 1 OS=Bos taurus GN=WDR1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/611 (34%), Positives = 340/611 (55%), Gaps = 16/611 (2%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
+ + +A P ERG ++ G+PK ++ LY NG+ V++R +D P + Y EH + V VA
Sbjct: 5 IKKVFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQVVVA 64
Query: 66 RYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
+Y+P+G +IAS DVSG +RIW T +LK E++ +G+I D+ W+ D RI G+G+
Sbjct: 65 KYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGR 124
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
K F F+WDSG++VG+ GH++ + S + K +RP+R+ T +D F+EGPPFKFK
Sbjct: 125 EK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLVTGSDDNCAAFFEGPPFKFKF 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ +H FVNC+RFSPDG++ + S+D + IYDGK+GEK+ H G IYA+SWS
Sbjct: 184 TISDHGRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAISWS 243
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PD +L+ S DK++K+W++ + V+ TF ++ V D +GCLWQ DHL+++SL
Sbjct: 244 PDSTHLLSASGDKTSKIWDV----NVNSVVNTFTMGSN--VLDQQLGCLWQKDHLLSISL 297
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT-ILSSSYDGAIIKWIRGVGYSS 363
G I+ +N K GH K++ LT K ++ I S S+DG I W G +
Sbjct: 298 SGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGEND 357
Query: 364 KLEKKYDARIKCLAAVEE--VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421
K V+E + + D+ V L + + + QP L++
Sbjct: 358 SFAGKGHTNQVSRMTVDEHGQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCLAVGP 417
Query: 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG 481
+ +V V+L D K S + G+ A+ P G VGG +G + +YSI G
Sbjct: 418 GGYTV-VVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRLYSILG 476
Query: 482 NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF-HTARI 540
TL +E L + +G +T + +S D + A D ++ V+ V+ NN+ + H A+I
Sbjct: 477 TTLKDEGKLLEAKGPVTDLAFSHDGAFLAVCDASKVVTVF-SVADGYSENNVFYGHHAKI 535
Query: 541 NCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSSG 599
CLAWSP + A+G +D V ++ + P +R+ I++AH L V +A++D+ +V++
Sbjct: 536 VCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETRVKIQDAHRLHHVSSLAWLDEHTLVTTS 594
Query: 600 EDACIRVWRLA 610
DA ++ W +A
Sbjct: 595 HDASVKEWTIA 605
|
Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Bos taurus (taxid: 9913) |
| >sp|Q5RKI0|WDR1_RAT WD repeat-containing protein 1 OS=Rattus norvegicus GN=Wdr1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 212/610 (34%), Positives = 339/610 (55%), Gaps = 16/610 (2%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
+ + +A P ERG ++ G+PK D LY NG+ V++R +D P + Y EH + V VA
Sbjct: 5 IKKVFASLPQVERGVSKILGGDPKGDNFLYTNGKCVILRNIDNPAVADIYTEHAHQVVVA 64
Query: 66 RYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
+Y+P+G +IAS D+SG +RIW T +LK E++ +G+I D+ W+ D RI G+G+
Sbjct: 65 KYAPSGFYIASGDISGKLRIWDTTQKEHILKYEYQPFAGKIKDIAWTEDSKRIAVVGEGR 124
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
K F F+WD+G++VG+ GH++ + S + K RP+R+AT +D F+EGPPFKFK
Sbjct: 125 EK-FGAVFLWDTGSSVGEITGHNKVINSVDIKQNRPYRLATGSDDNCAAFFEGPPFKFKF 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ +HS FVNC+RFSPDG++ + S+D + IYDGK+GEK+ H G IYA+SWS
Sbjct: 184 TIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYAISWS 243
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PD +L+ S DK++K+W++ + V+ TF ++ V D +GCLWQ DHL+++SL
Sbjct: 244 PDSTHLLSASGDKTSKIWDV----NVNSVVSTFPMGSN--VLDQQLGCLWQKDHLLSISL 297
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT-ILSSSYDGAIIKWIRGVGYSS 363
G I+ +N K GH K++ LT K ++ I S S+DG I W G +
Sbjct: 298 SGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGEND 357
Query: 364 KLEKKYDARIKCLAAVEE--VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421
K V+E + + D+ V L + + + QP +++
Sbjct: 358 SFSGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCVAVGP 417
Query: 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG 481
+ +V V+L D K S + G+ A+ P G VGG +G + +YSI G
Sbjct: 418 GGYTV-VVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGSDGNVRVYSILG 476
Query: 482 NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF-HTARI 540
TL +E L + +G +T + YS D + A D ++ V+ V+ NN+ + H A+I
Sbjct: 477 ATLKDEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVF-SVADGYSENNVFYGHHAKI 535
Query: 541 NCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSSG 599
CLAWSP + A+G +D V ++ + P +++ I++AH L V +A++D+ +V++
Sbjct: 536 VCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETKVKIQDAHRLHHVSSLAWLDEHTLVTTS 594
Query: 600 EDACIRVWRL 609
DA ++ W +
Sbjct: 595 HDASVKEWTI 604
|
Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Rattus norvegicus (taxid: 10116) |
| >sp|O88342|WDR1_MOUSE WD repeat-containing protein 1 OS=Mus musculus GN=Wdr1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/610 (34%), Positives = 343/610 (56%), Gaps = 16/610 (2%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
+ + +A P ERG ++ G+PK D LY NG+ V++R +D P + Y EH + V VA
Sbjct: 5 IKKVFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQVVVA 64
Query: 66 RYSPNGEWIASADVSGSVRIWGT-HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
+Y+P+G +IAS D+SG +RIW T +LK E++ +G+I D+ W+ D RI G+G+
Sbjct: 65 KYAPSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGR 124
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
K F F+WD+G++VG+ GH++ + S + K TRP+R+AT +D F+EGPPFKFK
Sbjct: 125 EK-FGAVFLWDTGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPFKFKF 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
+ +HS FVNC+RFSPDG++ + S+D + IYDGK+GEK+ H G IYA+SWS
Sbjct: 184 TIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYAISWS 243
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PD +L+ S DK++K+W++ + V+ TF ++ V D +GCLWQ DHL+++SL
Sbjct: 244 PDSTHLLSASGDKTSKIWDV----NVNSVVSTFPMGSN--VLDQQLGCLWQKDHLLSISL 297
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT-ILSSSYDGAIIKWIRGVGYSS 363
G I+ +N K GH K++ LT + ++ I S S+DG I W G +
Sbjct: 298 SGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWDSETGEND 357
Query: 364 KLE-KKYDARIKCLAAVE-EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421
K + ++ + E E + + D+ V L + + + QP +++
Sbjct: 358 SFSGKGHTNQVSRMTVNESEQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCVAVGP 417
Query: 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG 481
+ +V V+L D K S + G+ A+ P G VGG +G + +YSI
Sbjct: 418 GGYTV-VVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGTDGNVRVYSILA 476
Query: 482 NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF-HTARI 540
+TL +E L + +G +T + YS D + A D ++ V+ V+ NN+ + H A+I
Sbjct: 477 STLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVF-SVADGYSENNVFYGHHAKI 535
Query: 541 NCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSSG 599
CLAWSP + A+G +D V ++ + P +++ I++AH L V +A++D+ +V++
Sbjct: 536 VCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETKVKIQDAHRLHHVSSLAWLDEHTLVTTS 594
Query: 600 EDACIRVWRL 609
DA ++ W +
Sbjct: 595 HDASVKEWTI 604
|
Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 612 | ||||||
| 224118700 | 609 | predicted protein [Populus trichocarpa] | 0.986 | 0.991 | 0.770 | 0.0 | |
| 449497501 | 611 | PREDICTED: 66 kDa stress protein-like [C | 0.998 | 1.0 | 0.743 | 0.0 | |
| 449439121 | 616 | PREDICTED: LOW QUALITY PROTEIN: 66 kDa s | 0.998 | 0.991 | 0.737 | 0.0 | |
| 255584820 | 611 | WD-repeat protein, putative [Ricinus com | 0.991 | 0.993 | 0.748 | 0.0 | |
| 224135493 | 609 | predicted protein [Populus trichocarpa] | 0.986 | 0.991 | 0.752 | 0.0 | |
| 356575646 | 610 | PREDICTED: 66 kDa stress protein-like [G | 0.991 | 0.995 | 0.744 | 0.0 | |
| 225456106 | 609 | PREDICTED: 66 kDa stress protein [Vitis | 0.991 | 0.996 | 0.754 | 0.0 | |
| 356527884 | 610 | PREDICTED: 66 kDa stress protein-like [G | 0.986 | 0.990 | 0.737 | 0.0 | |
| 356511267 | 610 | PREDICTED: 66 kDa stress protein-like [G | 0.986 | 0.990 | 0.737 | 0.0 | |
| 334184089 | 611 | nucleotide binding protein [Arabidopsis | 0.990 | 0.991 | 0.727 | 0.0 |
| >gi|224118700|ref|XP_002317885.1| predicted protein [Populus trichocarpa] gi|222858558|gb|EEE96105.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/605 (77%), Positives = 531/605 (87%), Gaps = 1/605 (0%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
L+ETYAC PSTERGRGILISG+PKT+ ILY N RS+LI LD PL V YGEH Y TV
Sbjct: 3 ELAETYACVPSTERGRGILISGHPKTNKILYTNNRSILILNLDNPLDVSVYGEHAYQATV 62
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
ARYSPNGEWIASADVSG+VRIWG +N VLK EFKVL+GRIDDLQWSPDGLRIVA GDGK
Sbjct: 63 ARYSPNGEWIASADVSGTVRIWGAYNDHVLKKEFKVLTGRIDDLQWSPDGLRIVASGDGK 122
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
GKS VRAFMWDSGT VG+FDGHSRRVLSC FKPTRPFRI TCGEDFLVNFYEGPPFKFK
Sbjct: 123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKS 182
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
SHR+HSNFVNC+RFSPDGSK ISVSSD+KG+++DGK+GEKIG+ SSEDGH GSIYAVSWS
Sbjct: 183 SHRDHSNFVNCVRFSPDGSKFISVSSDKKGILFDGKTGEKIGQISSEDGHKGSIYAVSWS 242
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PDGK+VLTVSADKSAKVWEI +DGSG ++ KT SS S V+DMLVGCLWQNDHL+TVSL
Sbjct: 243 PDGKQVLTVSADKSAKVWEICDDGSG-KLTKTLTSSGSGGVDDMLVGCLWQNDHLVTVSL 301
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364
GG ISIFSAS+LDK+PL +GH+KNV++L+ LK +TILSSSYDG IIKWI+G+GYSSK
Sbjct: 302 GGTISIFSASDLDKSPLKIAGHMKNVTSLSVLKNVPKTILSSSYDGLIIKWIQGIGYSSK 361
Query: 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424
L++K + +IKCLAA EE I T+GFDNK+WRV L + +CGDA+ IDVG+QP D+SLAL P
Sbjct: 362 LQRKENTQIKCLAAAEEEIVTSGFDNKIWRVHLLDDQCGDADSIDVGNQPKDISLALLCP 421
Query: 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484
ELALV+ ESGV++L KV+S I+LGF VTA AIAPDGSEAI+GG +GKLHIYS++G+TL
Sbjct: 422 ELALVTIESGVVMLRGTKVVSTINLGFAVTASAIAPDGSEAIIGGLDGKLHIYSVTGDTL 481
Query: 485 TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLA 544
TEE VLEKHRGAI+VI+YSPD SMFAS D NREA+VWDRVS+EVKL NML+HTARINCLA
Sbjct: 482 TEEAVLEKHRGAISVIRYSPDDSMFASGDLNREAVVWDRVSREVKLKNMLYHTARINCLA 541
Query: 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604
WSP S+MVATGS+D CVIIYEI KPASSR+TIK AHLGGVYG+AF DD +VVSSGEDAC+
Sbjct: 542 WSPDSSMVATGSLDNCVIIYEIDKPASSRMTIKGAHLGGVYGLAFADDHSVVSSGEDACV 601
Query: 605 RVWRL 609
RVWR+
Sbjct: 602 RVWRV 606
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449497501|ref|XP_004160420.1| PREDICTED: 66 kDa stress protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/612 (74%), Positives = 538/612 (87%), Gaps = 1/612 (0%)
Query: 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY 60
MA LSETYAC PSTERGRGILISG+PKT+++LY NGRSV+I LD PL V Y EHGY
Sbjct: 1 MATPELSETYACVPSTERGRGILISGHPKTNSVLYTNGRSVMILNLDNPLEVSVYAEHGY 60
Query: 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVAC 120
P TVARYSPNGEWIASADVSG+VRIWGTH GFVLK EFKVLSGRIDDLQWSPDG+RIVAC
Sbjct: 61 PATVARYSPNGEWIASADVSGTVRIWGTHIGFVLKKEFKVLSGRIDDLQWSPDGMRIVAC 120
Query: 121 GDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF 180
G+GKGKSFVRAFMWDSGT VG+FDGHSRRVLSC FKPTRPFRIATCGEDFLVNFYEGPPF
Sbjct: 121 GEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYEGPPF 180
Query: 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240
+FKLS R+HSNFVNC+RFSPDGSK I+VSSD+KG+IYD K+G+K+GE SS+DGH GSIYA
Sbjct: 181 RFKLSLRDHSNFVNCLRFSPDGSKFITVSSDKKGIIYDAKTGDKMGELSSDDGHKGSIYA 240
Query: 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300
VSWS DGK+VLTVSADK+AKVWEI +DG+G ++ KT S + V+DMLVGCLWQN H++
Sbjct: 241 VSWSSDGKRVLTVSADKTAKVWEISDDGNG-KLEKTLTSPGTGGVDDMLVGCLWQNQHIV 299
Query: 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360
TVSLGG IS+FSAS+LDK+P+ SGH+KNV++L LK + ILS+SYDG IIKWI+G+G
Sbjct: 300 TVSLGGTISLFSASDLDKSPVILSGHMKNVTSLVVLKSDPKVILSTSYDGVIIKWIQGIG 359
Query: 361 YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLA 420
YS KL+++ +++IKC AA+E+ + T+GFDNKVWRV + +G+CG+AE IDVGSQP DL+LA
Sbjct: 360 YSGKLQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPKDLTLA 419
Query: 421 LSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSIS 480
SPELALVS +SGV+LL ++S I+LGFTVTA +APDGSEAI+GGQ+GKLHIYSI+
Sbjct: 420 AVSPELALVSIDSGVVLLRGSSIVSTINLGFTVTASVLAPDGSEAIIGGQDGKLHIYSIN 479
Query: 481 GNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARI 540
G++LTEE+ LEKHRGAI+VI+YSPD+SMFAS D NREA+VWDR S+EVKL NML+HTARI
Sbjct: 480 GDSLTEEVTLEKHRGAISVIRYSPDLSMFASGDLNREAVVWDRASREVKLKNMLYHTARI 539
Query: 541 NCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE 600
NCLAWSP +T VATGS+DTCVIIYEI KPAS+R+T+K AHLGGVYG+AF DDF+VVSSGE
Sbjct: 540 NCLAWSPDNTKVATGSLDTCVIIYEIDKPASNRLTVKGAHLGGVYGLAFTDDFSVVSSGE 599
Query: 601 DACIRVWRLATE 612
DAC+RVW+L +
Sbjct: 600 DACVRVWKLVPQ 611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439121|ref|XP_004137336.1| PREDICTED: LOW QUALITY PROTEIN: 66 kDa stress protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/617 (73%), Positives = 538/617 (87%), Gaps = 6/617 (0%)
Query: 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY 60
MA LSETYAC PSTERGRGILISG+PKT+++LY NGRSV+I LD PL V Y EHGY
Sbjct: 1 MATPELSETYACVPSTERGRGILISGHPKTNSVLYTNGRSVMILNLDNPLEVSVYAEHGY 60
Query: 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVAC 120
P TVARYSPNGEWIASADVSG+VRIWGTH GFVLK EFKVLSGRIDDLQWSPDG+RIVAC
Sbjct: 61 PATVARYSPNGEWIASADVSGTVRIWGTHIGFVLKKEFKVLSGRIDDLQWSPDGMRIVAC 120
Query: 121 GDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-----EDFLVNFY 175
G+GKGKSFVRAFMWDSGT VG+FDGHSRRVLSC FKPTRPFRIATCG EDFLVNFY
Sbjct: 121 GEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIATCGIATCGEDFLVNFY 180
Query: 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235
EGPPF+FKLS R+HSNFVNC+RFSPDGSK I+VSSD+KG+IYD K+G+K+GE SS+DGH
Sbjct: 181 EGPPFRFKLSLRDHSNFVNCLRFSPDGSKFITVSSDKKGIIYDAKTGDKMGELSSDDGHK 240
Query: 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295
GSIYAVSWS DGK+VLTVSADK+AKVWEI +DG+G ++ KT S + V+DMLVGCLWQ
Sbjct: 241 GSIYAVSWSSDGKRVLTVSADKTAKVWEISDDGNG-KLEKTLTSPGTGGVDDMLVGCLWQ 299
Query: 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355
N H++TVSLGG IS+FSAS+LDK+P+ SGH+KNV++L LK + ILS+SYDG IIKW
Sbjct: 300 NQHIVTVSLGGTISLFSASDLDKSPVILSGHMKNVTSLVVLKSDPKVILSTSYDGVIIKW 359
Query: 356 IRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPL 415
I+G+GYS KL+++ +++IKC AA+E+ + T+GFDNKVWRV + +G+CG+AE IDVGSQP
Sbjct: 360 IQGIGYSGKLQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPK 419
Query: 416 DLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLH 475
DL+LA SPELALVS +SGV+LL ++S I+LGFTVTA +APDGSEAI+GGQ+GKLH
Sbjct: 420 DLTLAAVSPELALVSIDSGVVLLRGSSIVSTINLGFTVTASVLAPDGSEAIIGGQDGKLH 479
Query: 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF 535
IYSI+G++LTEE+ LEKHRGAI+VI+YSPD+SMFAS D NREA+VWDR S+EVKL NML+
Sbjct: 480 IYSINGDSLTEEVTLEKHRGAISVIRYSPDLSMFASGDLNREAVVWDRASREVKLKNMLY 539
Query: 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNV 595
HTARINCLAWSP +T VATGS+DTCVIIYEI KPAS+R+T+K AHLGGVYG+AF DDF+V
Sbjct: 540 HTARINCLAWSPDNTKVATGSLDTCVIIYEIDKPASNRLTVKGAHLGGVYGLAFTDDFSV 599
Query: 596 VSSGEDACIRVWRLATE 612
VSSGEDAC+RVW+L +
Sbjct: 600 VSSGEDACVRVWKLVPQ 616
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584820|ref|XP_002533127.1| WD-repeat protein, putative [Ricinus communis] gi|223527071|gb|EEF29254.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/608 (74%), Positives = 524/608 (86%), Gaps = 1/608 (0%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
+SETYAC PSTERGRGILISGNPK+++ILY N RSVLI LD PL V YG+HGY TV
Sbjct: 3 QISETYACVPSTERGRGILISGNPKSNSILYTNNRSVLILNLDNPLDVSVYGDHGYQATV 62
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
ARYSPNGEWIASADVSG+VRIWG +N VLK EFKVLSGRIDDLQWSPDGLRIVACGDGK
Sbjct: 63 ARYSPNGEWIASADVSGTVRIWGAYNDHVLKKEFKVLSGRIDDLQWSPDGLRIVACGDGK 122
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
GKS VRAFMWDSGT VG+FDGHSRRVLSC FKPTRPFRI TCGEDFLVNFYEGPPFKFKL
Sbjct: 123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCGFKPTRPFRIVTCGEDFLVNFYEGPPFKFKL 182
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
S R+HSNFVNC+R+SPDGSK ISVSSD+KG+++DGK+GEKIGE SS DGH GSIYAVSWS
Sbjct: 183 SRRDHSNFVNCVRYSPDGSKFISVSSDKKGILFDGKTGEKIGELSSGDGHKGSIYAVSWS 242
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PDGK+VLT SADKSAKVWEI +DG+G ++ KT S S ++DMLVGCLWQNDHL+TVSL
Sbjct: 243 PDGKQVLTASADKSAKVWEICDDGNG-KLKKTLTCSGSGGLDDMLVGCLWQNDHLVTVSL 301
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364
GG ISIFSA++LDK P SGH+KNV++L LK +TILSSSYDG I+KWI+G+GYS K
Sbjct: 302 GGTISIFSANDLDKTPQQISGHMKNVTSLAVLKNVPKTILSSSYDGLIVKWIQGIGYSCK 361
Query: 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424
+ +K + +IKCLAAVEE I T+GFDNK+WRV +CG A+ ID+GSQP DLSLAL P
Sbjct: 362 VHRKENTQIKCLAAVEEEIVTSGFDNKIWRVHFQGDQCGGADSIDIGSQPKDLSLALLCP 421
Query: 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484
EL LV+ +SGV++L K++S IDLGF VTA A+APDGSEAI+GGQ+GKLHIYS+ G+TL
Sbjct: 422 ELVLVTIDSGVVMLRGTKIVSTIDLGFAVTASAVAPDGSEAIIGGQDGKLHIYSVMGDTL 481
Query: 485 TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLA 544
EE VLEKHRGA++VI+YSPDVSMFAS D NREAIVWDRVS+EVKL NML+HTARINCLA
Sbjct: 482 KEEAVLEKHRGAVSVIRYSPDVSMFASGDANREAIVWDRVSREVKLKNMLYHTARINCLA 541
Query: 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604
WSP S+MVATGS+DTCVIIYE+ KPA+SR TIK AHLGGVYG+AF D +VVSSGEDAC+
Sbjct: 542 WSPDSSMVATGSLDTCVIIYEVDKPATSRRTIKGAHLGGVYGLAFTDQLSVVSSGEDACV 601
Query: 605 RVWRLATE 612
R+W+L+ +
Sbjct: 602 RLWKLSPQ 609
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135493|ref|XP_002322087.1| predicted protein [Populus trichocarpa] gi|222869083|gb|EEF06214.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/605 (75%), Positives = 525/605 (86%), Gaps = 1/605 (0%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
L+ETYAC PSTERGRGILISG+PKT+ ILY N RS+LI LD PL V YGEH Y TV
Sbjct: 3 ELAETYACVPSTERGRGILISGHPKTNKILYTNNRSILILNLDNPLDVSVYGEHAYQATV 62
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
ARYSPNGEWIASADVSG+VRIWG +N VLK EFKVL+GRIDDLQWSPDGLRIVA GDGK
Sbjct: 63 ARYSPNGEWIASADVSGTVRIWGAYNDHVLKKEFKVLTGRIDDLQWSPDGLRIVASGDGK 122
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
GKS VRAFMWDSGT VG+FDGHSRRVLSC FKPTRPFRI TCGEDFLVNFYEGPPFKFK
Sbjct: 123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKS 182
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
SHR+HSNFVNCIRFSPDGSK ISVSSD+KG+++DGK+GEKIGE SSEDGH GSIYAVSWS
Sbjct: 183 SHRDHSNFVNCIRFSPDGSKFISVSSDKKGILFDGKTGEKIGELSSEDGHKGSIYAVSWS 242
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PDGK+VLTVSADKSAKVWEI +DGSG ++ KT SS S V+DMLV CLWQNDHL+TVSL
Sbjct: 243 PDGKQVLTVSADKSAKVWEICDDGSG-KLTKTLTSSDSGGVDDMLVSCLWQNDHLVTVSL 301
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364
GG IS+FSAS+L K+ L SGH+KNV++L+ LK +TILSSSYDG I+KWI+G+GYS K
Sbjct: 302 GGTISVFSASDLGKSALQISGHMKNVTSLSVLKNVPKTILSSSYDGLIVKWIQGIGYSGK 361
Query: 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424
L +K +++IKCLAA EE + T+GFDNK+WRV +CGDA+ IDV SQP D+SLAL P
Sbjct: 362 LRRKENSQIKCLAAAEEEVITSGFDNKLWRVRFLGDQCGDADSIDVRSQPKDISLALLCP 421
Query: 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484
ELALV+ +SGV+++ KV+S I+L F VTA AI+PDGSEAI+GGQ+GKLHIYS++G+TL
Sbjct: 422 ELALVAIDSGVVMIRGTKVVSTINLDFAVTASAISPDGSEAIIGGQDGKLHIYSVTGDTL 481
Query: 485 TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLA 544
TE+ VLEKHRGA++VI+YSPDVSMFAS D NREA+VWDR S+EVKL NML+HTARINCLA
Sbjct: 482 TEDAVLEKHRGAVSVIRYSPDVSMFASGDLNREAVVWDRASREVKLKNMLYHTARINCLA 541
Query: 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604
WSP S+MVATGS+DTC+IIYEI KPASSR+TIK AHLGGVYG+AF DD +VVSSGEDAC+
Sbjct: 542 WSPDSSMVATGSLDTCIIIYEIDKPASSRMTIKGAHLGGVYGLAFTDDRSVVSSGEDACV 601
Query: 605 RVWRL 609
RVW++
Sbjct: 602 RVWKV 606
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575646|ref|XP_003555949.1| PREDICTED: 66 kDa stress protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/607 (74%), Positives = 524/607 (86%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
LSETYACAPSTERGRGILISG+ KT+ ILYC GRSV+IR LD PL V Y EH YPVTVA
Sbjct: 4 LSETYACAPSTERGRGILISGDAKTNNILYCTGRSVIIRNLDNPLQVWVYCEHAYPVTVA 63
Query: 66 RYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG 125
RYSPNGEW+ASAD+SG+VRIWGTHN FVLKNEF+VLSGRIDDLQWS DG+RIVACGDGKG
Sbjct: 64 RYSPNGEWVASADISGTVRIWGTHNEFVLKNEFRVLSGRIDDLQWSFDGMRIVACGDGKG 123
Query: 126 KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185
KSFVRAFMWDSG+TVGDFDGHSRRVLSC FKPTRPFRIATCGEDFL NFY+GPPFKF +S
Sbjct: 124 KSFVRAFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIATCGEDFLANFYDGPPFKFNMS 183
Query: 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
R+HSNFVNC+RFSPDGSK I+VSSDRKG+IYDGK+G K+GE S+EDGH GSIYAVSWSP
Sbjct: 184 IRDHSNFVNCVRFSPDGSKFITVSSDRKGIIYDGKTGNKLGELSTEDGHKGSIYAVSWSP 243
Query: 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305
D K+VLTVSADKSAKVW ++EDGS G V KT A + S VEDMLVGCLWQND+L+T+SLG
Sbjct: 244 DSKQVLTVSADKSAKVWNVVEDGSSGTVNKTLACTESGGVEDMLVGCLWQNDYLLTISLG 303
Query: 306 GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365
G I ++SA +LDK+PLS SGH+KN++ LT L S++ +LSSSYDG II+WI G+GYS K
Sbjct: 304 GTIYLYSAKDLDKSPLSLSGHMKNITVLTLLNRSEKMLLSSSYDGVIIRWIPGMGYSGKF 363
Query: 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE 425
E K IK L A ++ + AGFDNKV+RVPL G AE +DVGSQP D++LAL++PE
Sbjct: 364 EGKQFGLIKLLVAGQDEVIAAGFDNKVYRVPLHGDNFGPAETVDVGSQPKDVTLALNNPE 423
Query: 426 LALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT 485
A+V+ ESGV+LL+ K++S I+LGF VTA A++PDGSEAIVGGQ+GKLH+YS+SG+T+T
Sbjct: 424 FAIVAIESGVVLLNGSKIVSTINLGFIVTAAAMSPDGSEAIVGGQDGKLHMYSVSGDTVT 483
Query: 486 EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAW 545
E+ VLEKHRGAITVI+YSPD SMFASAD NREA+VWDR SKEVKLNNMLF+TARINCLAW
Sbjct: 484 EQAVLEKHRGAITVIRYSPDFSMFASADLNREAVVWDRASKEVKLNNMLFNTARINCLAW 543
Query: 546 SPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIR 605
SP ST+VATGS+DTCVIIYE+GKPASSR TIK AH+GGVYG+ F+D VVSSGED C+R
Sbjct: 544 SPDSTLVATGSLDTCVIIYEVGKPASSRRTIKGAHIGGVYGLVFIDQERVVSSGEDGCVR 603
Query: 606 VWRLATE 612
VW L +E
Sbjct: 604 VWNLISE 610
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456106|ref|XP_002281466.1| PREDICTED: 66 kDa stress protein [Vitis vinifera] gi|297734297|emb|CBI15544.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/608 (75%), Positives = 530/608 (87%), Gaps = 1/608 (0%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
LSETYAC PSTERGRGILISG+PK++ ILY NGRSV+IRYL KPL V YGEH Y TV
Sbjct: 3 ELSETYACVPSTERGRGILISGDPKSNAILYTNGRSVIIRYLHKPLEVSIYGEHAYQATV 62
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
AR+SPNGEWIASADVSG+VRIWGTHN VLK EF+VLSGRIDDLQWS DG+RIV GDGK
Sbjct: 63 ARFSPNGEWIASADVSGTVRIWGTHNDHVLKKEFRVLSGRIDDLQWSADGMRIVVSGDGK 122
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
GKSFVRAFMWDSG+ VG+FDGHS+RVLSC FKPTRPFRI TCGEDFLVNFYEGPPFKFK
Sbjct: 123 GKSFVRAFMWDSGSNVGEFDGHSKRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKQ 182
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
SHR HSNFVNCIR+SPDGSK ISVSSD+KG+IYDGK+GEKIGE SSEDGH GSIYAVSWS
Sbjct: 183 SHRHHSNFVNCIRYSPDGSKFISVSSDKKGVIYDGKTGEKIGELSSEDGHKGSIYAVSWS 242
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PD K+VLTVSADKSAKVWEI EDG+G +V KT S VEDMLVGCLWQNDHL+T+SL
Sbjct: 243 PDSKQVLTVSADKSAKVWEISEDGNG-KVKKTLTCPGSGGVEDMLVGCLWQNDHLVTISL 301
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364
GG +SIFSAS+LDK PLSFSGH+KNV++L LK + + +LS+SYDG IIKWI+G+GYS +
Sbjct: 302 GGTVSIFSASDLDKGPLSFSGHMKNVNSLAVLKSNPKVMLSTSYDGLIIKWIQGIGYSGR 361
Query: 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424
L++K +++IKC AAVEE I ++GFDNK+WRV L +CGDA+ +D+GSQP DLSL+L SP
Sbjct: 362 LDRKENSQIKCFAAVEEEIVSSGFDNKIWRVSLQGDQCGDADCVDIGSQPKDLSLSLLSP 421
Query: 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484
ELALVST+SGV++L V+S I+LGF V A I+PDGSEAI+GGQ+GKLHIYS++G+TL
Sbjct: 422 ELALVSTDSGVVILRGTNVVSTINLGFPVAASVISPDGSEAIIGGQDGKLHIYSVTGDTL 481
Query: 485 TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLA 544
EE VLEKHRGAITVI+YSPDVSMFAS D NREA+VWDR S+EV++ NML+HTARINCLA
Sbjct: 482 KEEAVLEKHRGAITVIRYSPDVSMFASGDANREAVVWDRASREVRVKNMLYHTARINCLA 541
Query: 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604
WSP ++MVATGS+DTCVIIYEI KPASSR+TIK AHLGGVYG+AF DD +VVSSGEDAC+
Sbjct: 542 WSPDNSMVATGSLDTCVIIYEIDKPASSRVTIKGAHLGGVYGLAFTDDTSVVSSGEDACV 601
Query: 605 RVWRLATE 612
RVW+L +
Sbjct: 602 RVWKLTPQ 609
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527884|ref|XP_003532536.1| PREDICTED: 66 kDa stress protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/605 (73%), Positives = 527/605 (87%), Gaps = 1/605 (0%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
L ETYAC P+TERGRGILISG+ K+++++Y NGRSV++ L PLHV YG+H YP TV
Sbjct: 4 ELLETYACMPTTERGRGILISGDAKSNSVVYTNGRSVVMMNLQNPLHVSVYGDHAYPATV 63
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
AR+SPNGEW+ASAD SG+VRIWGT N FVLK EF+VLS RIDDLQWSPDGLRIVACG+GK
Sbjct: 64 ARFSPNGEWVASADASGTVRIWGTRNDFVLKKEFRVLSARIDDLQWSPDGLRIVACGEGK 123
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
GKSFVRAFMWDSGT VG+FDGHSRRVLSC +KPTRPFR+ TCGEDFLVNFYEGPPF+FKL
Sbjct: 124 GKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLVNFYEGPPFRFKL 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
SHR+HSNFVNC+R+SPDGSK ISVSSD+KG+I+DGKS EKIGE SSE GH GSIYAVSWS
Sbjct: 184 SHRDHSNFVNCVRYSPDGSKFISVSSDKKGVIFDGKSAEKIGELSSEGGHTGSIYAVSWS 243
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PDGK+VLTVSADKSAKVW+I E G+ G+V KT + S VEDMLVGCLW ND+L+TVSL
Sbjct: 244 PDGKQVLTVSADKSAKVWDITE-GNNGKVKKTLTCAGSGGVEDMLVGCLWLNDYLVTVSL 302
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364
GG ISIF A++LDKAP +FSGH+KNVS+LT L+ + + +LSSSYDG I+KWI+G+GYS K
Sbjct: 303 GGTISIFLATDLDKAPTTFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSGK 362
Query: 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424
L +K +++IKCLAAVEE I T+GFDNK+ RV L +CGD E ID+GSQP DLS+AL SP
Sbjct: 363 LHRKENSQIKCLAAVEEEIVTSGFDNKIRRVSLHRDQCGDTEAIDIGSQPKDLSVALLSP 422
Query: 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484
ELALVS +SGV++L K++S I+LGF VTA A++PDGSEAI+GGQ+GKLHIYS+SG+TL
Sbjct: 423 ELALVSIDSGVVMLRGTKIVSTINLGFIVTASAVSPDGSEAIIGGQDGKLHIYSVSGDTL 482
Query: 485 TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLA 544
EE+VLEKHRGAI+VI+YSPDVSMFAS D NREA+VWDR S+EVKL NML+HTARINCLA
Sbjct: 483 VEEVVLEKHRGAISVIRYSPDVSMFASGDVNREAVVWDRASREVKLKNMLYHTARINCLA 542
Query: 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604
WSP S +ATGS+DTCVIIYE+ +PASSRITIK AHLGGVYG+AF D++++VSSGEDA I
Sbjct: 543 WSPDSHRIATGSLDTCVIIYEVDQPASSRITIKGAHLGGVYGLAFTDEYSLVSSGEDAFI 602
Query: 605 RVWRL 609
RVWR+
Sbjct: 603 RVWRI 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511267|ref|XP_003524348.1| PREDICTED: 66 kDa stress protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/605 (73%), Positives = 525/605 (86%), Gaps = 1/605 (0%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
L ETYAC P+TERGRGILISG+ K+++I+Y NGRSV++ L PL+V YG+H YP TV
Sbjct: 4 ELLETYACMPTTERGRGILISGDAKSNSIVYTNGRSVVMMNLQNPLNVSVYGDHAYPATV 63
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
AR+SPNGEW+ASAD SGSVRIWGT N FVLK EF+VLS RIDDLQWSPDGLRIVACG+GK
Sbjct: 64 ARFSPNGEWVASADASGSVRIWGTRNDFVLKKEFRVLSARIDDLQWSPDGLRIVACGEGK 123
Query: 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184
GKSFVRAFMWDSGT VG+FDGHSRRVLSC +KPTRPFR+ TCGEDFL+NFYEGPPF+FKL
Sbjct: 124 GKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLLNFYEGPPFRFKL 183
Query: 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244
SHR+HSNFVNC+R+SPDGSK ISVSSD+KG+I+DG S EKIGE SSE GH GSIYAVSWS
Sbjct: 184 SHRDHSNFVNCVRYSPDGSKFISVSSDKKGIIFDGNSAEKIGELSSEGGHTGSIYAVSWS 243
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PDGK VLTVSADKSAKVW+I ED +G +V KT + VEDMLVGCLW ND+L+TVSL
Sbjct: 244 PDGKLVLTVSADKSAKVWDITEDNNG-KVKKTLTCPGTGGVEDMLVGCLWLNDYLVTVSL 302
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364
GG ISIF AS+LDKAP +FSGH+KNVS+LT L+ + + +LSSSYDG I+KWI+G+GYS K
Sbjct: 303 GGTISIFLASDLDKAPTAFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSEK 362
Query: 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424
L++K +++IKCLAAVEE I T+GFDNK+ RV L +CGDAE ID+GSQP DLS+AL SP
Sbjct: 363 LQRKENSQIKCLAAVEEEIVTSGFDNKIRRVSLHGDQCGDAEAIDIGSQPKDLSVALLSP 422
Query: 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484
ELALVS +SGV++L K++S I+LGF VTA A++PDG+EAI+GGQ+GKLHIYSISG+TL
Sbjct: 423 ELALVSIDSGVVMLRGAKIVSTINLGFIVTASAVSPDGNEAIIGGQDGKLHIYSISGDTL 482
Query: 485 TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLA 544
EE VLEKHRGAI+VI+YSPD+SMFAS D NREAIVWDR S+EVKL NML+HTARINCLA
Sbjct: 483 VEEAVLEKHRGAISVIRYSPDLSMFASGDVNREAIVWDRASREVKLKNMLYHTARINCLA 542
Query: 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604
WSP S +ATGS+DTCVIIYE+ +PASSRITIK AHLGGVYG+AF D++++VSSGEDA I
Sbjct: 543 WSPDSLRIATGSLDTCVIIYEVYQPASSRITIKGAHLGGVYGLAFTDEYSLVSSGEDAFI 602
Query: 605 RVWRL 609
RVWR+
Sbjct: 603 RVWRI 607
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184089|ref|NP_178242.3| nucleotide binding protein [Arabidopsis thaliana] gi|334184091|ref|NP_001189494.1| nucleotide binding protein [Arabidopsis thaliana] gi|4262240|gb|AAD14533.1| putative stress protein [Arabidopsis thaliana] gi|330250342|gb|AEC05436.1| nucleotide binding protein [Arabidopsis thaliana] gi|330250343|gb|AEC05437.1| nucleotide binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/609 (72%), Positives = 517/609 (84%), Gaps = 3/609 (0%)
Query: 6 LSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVA 65
L ET+ C PSTERGRGILISG+ K+DTILYCNGRSV IR L + V+ YGEHGY VTVA
Sbjct: 4 LLETFPCVPSTERGRGILISGDSKSDTILYCNGRSVFIRSLRQLQDVQVYGEHGYAVTVA 63
Query: 66 RYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG 125
RYSPNGEWIASADVSG+VR+WGTHNGFVLKNEF+VL+GR+DDLQWS DGLRIVA GDGKG
Sbjct: 64 RYSPNGEWIASADVSGTVRVWGTHNGFVLKNEFRVLAGRVDDLQWSFDGLRIVASGDGKG 123
Query: 126 KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185
KS VR+F WDSG T+GDFDGHSRRVLSC FKPTRPFRIATCGEDFLVNFY+GPPFKF S
Sbjct: 124 KSLVRSFAWDSGNTMGDFDGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYDGPPFKFHSS 183
Query: 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
HREHSNFVNCIR+SPDG+K I+VSSD+KG+IYDGK+G+K+GE +SEDGH GSIYAVSWSP
Sbjct: 184 HREHSNFVNCIRYSPDGTKFITVSSDKKGMIYDGKTGDKVGELASEDGHKGSIYAVSWSP 243
Query: 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305
D K+VLTVSADKSAKVWE+ EDG+ G VIKT + S EDMLVGCLWQNDHLITVSLG
Sbjct: 244 DSKRVLTVSADKSAKVWEVAEDGTIGSVIKTLSFMESGGAEDMLVGCLWQNDHLITVSLG 303
Query: 306 GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365
G +S+FSA ++DK PL SGH+KNV++L L +Q+TILS SYDG I+KW++GVGYS KL
Sbjct: 304 GTMSLFSADDMDKPPLLLSGHIKNVTSLAVLGENQKTILSCSYDGLIVKWLKGVGYSCKL 363
Query: 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE 425
+ K D +IK LAA E IF +G+DN VWR+PL + G AEH+D+G QPLD+S+A+ SPE
Sbjct: 364 QMK-DTKIKRLAATESSIFISGYDNMVWRIPLTDNGYGAAEHVDIGHQPLDISIAVDSPE 422
Query: 426 -LALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG-NT 483
ALVS +SGV+LL+ L ++SKIDLGF V A I+PDG EAIVGGQ+GKLHIYS+SG N
Sbjct: 423 ATALVSFDSGVVLLNGLNILSKIDLGFAVAASVISPDGKEAIVGGQDGKLHIYSVSGDNN 482
Query: 484 LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCL 543
L EE VLEKHRGA+TVI+YSPD++MFAS D NREA+VWDR +K+VKLNNMLFHTARIN L
Sbjct: 483 LKEEAVLEKHRGALTVIRYSPDLTMFASGDANREAVVWDRETKQVKLNNMLFHTARINSL 542
Query: 544 AWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDAC 603
AWSP++ MVATGSIDTCVI+YE+ KPASSRIT +NAHLGGV VAF+DD V SSGEDA
Sbjct: 543 AWSPNNKMVATGSIDTCVIVYEVDKPASSRITARNAHLGGVNAVAFIDDCTVASSGEDAS 602
Query: 604 IRVWRLATE 612
+R+W + +
Sbjct: 603 VRLWHIEPQ 611
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O75083 | WDR1_HUMAN | No assigned EC number | 0.3567 | 0.9689 | 0.9785 | yes | no |
| Q6DIF4 | WDR1_XENTR | No assigned EC number | 0.3502 | 0.9689 | 0.9769 | yes | no |
| Q9VU68 | WDR1_DROME | No assigned EC number | 0.3725 | 0.9591 | 0.9654 | yes | no |
| O93277 | WDR1_CHICK | No assigned EC number | 0.3606 | 0.9738 | 0.9786 | yes | no |
| O14301 | YE85_SCHPO | No assigned EC number | 0.3316 | 0.9575 | 0.9848 | yes | no |
| Q2KJH4 | WDR1_BOVIN | No assigned EC number | 0.3486 | 0.9722 | 0.9818 | yes | no |
| Q5RKI0 | WDR1_RAT | No assigned EC number | 0.3475 | 0.9705 | 0.9801 | yes | no |
| O88342 | WDR1_MOUSE | No assigned EC number | 0.3459 | 0.9705 | 0.9801 | yes | no |
| P54686 | WD42_DICDI | No assigned EC number | 0.3829 | 0.9640 | 0.9882 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 612 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-39 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-28 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-23 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-11 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| PRK02889 | 427 | PRK02889, tolB, translocation protein TolB; Provis | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.003 | |
| PRK04792 | 448 | PRK04792, tolB, translocation protein TolB; Provis | 0.003 | |
| TIGR02800 | 417 | TIGR02800, propeller_TolB, tol-pal system beta pro | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-39
Identities = 81/308 (26%), Positives = 146/308 (47%), Gaps = 22/308 (7%)
Query: 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ 109
L G H VT +SP+G+ +A+ G++++W G +L+ K +G + D+
Sbjct: 1 LRRTLKG-HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR-TLKGHTGPVRDVA 58
Query: 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169
S DG + + K +R + ++G V GH+ V S F P +++ D
Sbjct: 59 ASADGTYLASGSSDK---TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI-LSSSSRD 114
Query: 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229
+ ++ K + R H+++VN + FSPDG+ + S S D ++D ++G+ + +
Sbjct: 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174
Query: 230 SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289
GH G + +V++SPDG+K+L+ S+D + K+W++ S G+ + T N V +
Sbjct: 175 ---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL----STGKCLGTLRGHE-NGVNSVA 226
Query: 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ--QTILSSS 347
L + S G I ++ + + SGH +V T+L S + + S S
Sbjct: 227 F--SPDGYLLASGSEDGTIRVWDLRTGECV-QTLSGHTNSV---TSLAWSPDGKRLASGS 280
Query: 348 YDGAIIKW 355
DG I W
Sbjct: 281 ADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 14/212 (6%)
Query: 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114
H V+ +SP+G ++S+ ++++W G + + ++ + +SPDG
Sbjct: 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPDG 147
Query: 115 LRIV-ACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171
+ + DG K +WD +G V GH+ V S F P ++ + D
Sbjct: 148 TFVASSSQDGTIK------LWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGT 200
Query: 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE 231
+ ++ K + R H N VN + FSPDG L S S D ++D ++GE + S
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-- 258
Query: 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
GH S+ +++WSPDGK++ + SAD + ++W+
Sbjct: 259 -GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-25
Identities = 74/345 (21%), Positives = 134/345 (38%), Gaps = 16/345 (4%)
Query: 53 EFYGEHGYPVT-VARYSPNGEWIASA--DVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ 109
G H V+ +A SP+G I A + G+V++W L + S + L
Sbjct: 103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLA 162
Query: 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169
+SPDG + + G ++ + +G + GH+ V S F P IA+ D
Sbjct: 163 FSPDGKLLASGSSLDGT--IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220
Query: 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229
+ ++ K S + FSPDGS L S SSD ++D +S
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLR 278
Query: 230 SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289
+ GH S+ +V++SPDGK + + S+D + ++W D G+++ + L
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW----DLETGKLLSSLTLKGHEGPVSSL 334
Query: 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349
+ + S G I ++ +L + + + + + S S D
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLW---DLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD 391
Query: 350 GAIIKWIRGVGYSSKLEKKYDARIKCLA--AVEEVIFTAGFDNKV 392
G + W G + + +R+ L + + + DN +
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-23
Identities = 85/357 (23%), Positives = 145/357 (40%), Gaps = 21/357 (5%)
Query: 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG 81
+L G+ ++ +L L+ D L H +T +SP+GE + S G
Sbjct: 30 LLSLGSSESGILLLALLSDSLVSLPD--LSSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 82 SVRIWGTHNGFVLKNEFKVLSGR-IDDLQW-SPDGLRIVACGDGKGKSFVRAFMWD---S 136
++++W NG L + L + L SPDG I+ + +WD
Sbjct: 88 TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT---VKLWDLSTP 144
Query: 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCI 196
G + +GHS V S F P + D + ++ K + H++ V+ +
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204
Query: 197 RFSPDGSKLI-SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255
FSPDG LI S SSD ++D +G+ + S+ GH S+ + S+SPDG + + S+
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLL--RSTLSGHSDSVVS-SFSPDGSLLASGSS 261
Query: 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315
D + ++W++ S R + +SS + V L + S G + ++
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLS------VAFSPDGKLLASGSSDGTVRLWDLET 315
Query: 316 LDKAP-LSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371
L+ GH VS+L+ + S DG I W G K + +
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 5e-23
Identities = 76/384 (19%), Positives = 129/384 (33%), Gaps = 107/384 (27%)
Query: 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291
GH G + V++SPDGK + T S D + KVW D G +++T
Sbjct: 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVW----DLETGELLRTL-------------- 47
Query: 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351
GH V + A + S S D
Sbjct: 48 --------------------------------KGHTGPVRDVAASADGTY-LASGSSDKT 74
Query: 352 IIKWIRGVGYSSKLEKKYDARIKCLAAV--EEVIFTAGFDN--KVWRVPLCEGECGDA-- 405
I W G + + + + +A ++ ++ D KVW V G+C
Sbjct: 75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE--TGKCLTTLR 132
Query: 406 EHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA 465
H D V + A +PDG+
Sbjct: 133 GHTD------------------------------------------WVNSVAFSPDGTFV 150
Query: 466 IVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVS 525
Q+G + ++ + T L H G + + +SPD S+ + +WD +S
Sbjct: 151 ASSSQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD-LS 207
Query: 526 KEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVY 585
L + H +N +A+SP ++A+GS D + ++++ + T+ H V
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ-TLS-GHTNSVT 265
Query: 586 GVAFMDDFN-VVSSGEDACIRVWR 608
+A+ D + S D IR+W
Sbjct: 266 SLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 2e-22
Identities = 100/441 (22%), Positives = 171/441 (38%), Gaps = 57/441 (12%)
Query: 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238
P L R H + + I FSPDG L+S SSD ++D +GEK+ + H S+
Sbjct: 54 PDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL-HDSSV 112
Query: 239 YAVSW-SPDGKKVLTV--SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295
++ SPDG +L S D + K+W++ + G++I+T + +
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDL---STPGKLIRTLEGHSE---SVTSLAFSPD 166
Query: 296 NDHLITVS-LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIK 354
L + S L G I ++ K + +GH VS+L I S S DG I
Sbjct: 167 GKLLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 355 WIRGVGY--SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412
W G S L D+ + + ++ + D +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTI-------------------- 265
Query: 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG 472
L S LL +L S V + A +PDG G +G
Sbjct: 266 --------------RLWDLRSSSSLLRTLSGHSSS-----VLSVAFSPDGKLLASGSSDG 306
Query: 473 KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNN 532
+ ++ + L + L+ H G ++ + +SPD S+ S + I + L
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 533 MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-D 591
+ H+ + +++SP +V++GS D V ++++ S + + H V + F D
Sbjct: 367 LEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDL--STGSLLRNLDGHTSRVTSLDFSPD 423
Query: 592 DFNVVSSGEDACIRVWRLATE 612
++ S D IR+W L T
Sbjct: 424 GKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 8e-19
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 20/256 (7%)
Query: 367 KKYDARIKCLA--AVEEVIFTAGFDN--KVWRVPLCEGECGDAEHIDVGSQPLDLSLALS 422
K + + C+A +++ T D KVW + E H D++ +
Sbjct: 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG---PVRDVAASAD 62
Query: 423 SPELALVSTESGVILLD-SLKVMSKIDLGFT--VTACAIAPDGSEAIVGGQNGKLHIYSI 479
LA S++ + L D + G T V++ A +PDG ++ + ++ +
Sbjct: 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
Query: 480 SGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR 539
T L H + + +SPD + AS+ + +WD + + + HT
Sbjct: 123 --ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD-LRTGKCVATLTGHTGE 179
Query: 540 INCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIK--NAHLGGVYGVAFMDDFN-VV 596
+N +A+SP + + S D + ++++ S+ + H GV VAF D +
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDL----STGKCLGTLRGHENGVNSVAFSPDGYLLA 235
Query: 597 SSGEDACIRVWRLATE 612
S ED IRVW L T
Sbjct: 236 SGSEDGTIRVWDLRTG 251
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
L+ H G +T + +SPD + A+ G+ VWD + E+ HT + +A S
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASAD 62
Query: 549 STMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIRVW 607
T +A+GS D + ++++ R T+ H V VAF D + SS D I+VW
Sbjct: 63 GTYLASGSSDKTIRLWDLETGECVR-TLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 608 RLAT 611
+ T
Sbjct: 121 DVET 124
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.0 bits (180), Expect = 7e-14
Identities = 73/312 (23%), Positives = 125/312 (40%), Gaps = 17/312 (5%)
Query: 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW--IRGVGYSSKLEKKYDA 371
S D + L GH +++++ A + +LS S DG I W G LE +D+
Sbjct: 52 SLPDLSSLLLRGHEDSITSI-AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS 110
Query: 372 RIKCLAAV-----EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPEL 426
+ LA ++ ++ D V L L+ + L
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170
Query: 427 ALVSTESGVILL---DSLKVMSKIDL-GFTVTACAIAPDGSEAIVG-GQNGKLHIYSISG 481
A S+ G I L + K +S + V++ A +PDG I +G + ++ +S
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS- 229
Query: 482 NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARIN 541
L H + V +SPD S+ AS + +WD S L + H++ +
Sbjct: 230 TGKLLRSTLSGHSDS-VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288
Query: 542 CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN--VVSSG 599
+A+SP ++A+GS D V ++++ H G V ++F D + V
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348
Query: 600 EDACIRVWRLAT 611
+D IR+W L T
Sbjct: 349 DDGTIRLWDLRT 360
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.7 bits (161), Expect = 2e-11
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 20/210 (9%)
Query: 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL-SGRIDDLQ 109
+ H V +SP+G+ +AS G+VR+W G +L + G + L
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169
+SPDG +V+ G G +R + +G + +GHS VLS F P +++ D
Sbjct: 336 FSPDGSLLVSGGSDDG--TIRLWDLRTGKPLKTLEGHSN-VLSVSFSPD-GRVVSSGSTD 391
Query: 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229
V ++ + H++ V + FSPDG L S SSD ++D K+ K
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS---- 447
Query: 230 SEDGHHGSIYAVSWSPDGKKVLTVSADKSA 259
VS+SPDGK + + S+D S
Sbjct: 448 -----------VSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVW 262
GH G + +V++SPDG + + S D + +VW
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-06
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 221 SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
SGE + GH G + +V++SPDGK + + S D + K+W+
Sbjct: 1 SGELLKTLK---GHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 536 HTARINCLAWSPSSTMVATGSIDTCVIIY 564
HT + +A+SP ++A+GS D V ++
Sbjct: 10 HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 1e-04
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218
K + + H+ V + FSPDG+ L S S D ++D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 1e-04
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218
+ + + H+ V + FSPDG L S S D ++D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 1e-04
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 536 HTARINCLAWSPSSTMVATGSIDTCVIIYE 565
HT + +A+SP +A+GS D + +++
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 12/81 (14%)
Query: 198 FSPDGSKLISVS-SDRKGLIY--DGKSGEK--IGEFSSEDGHHGSIYAVSWSPDGKKV-L 251
+SPDG+KL VS +K ++Y D +G + + F GS A +WSPDG+ + +
Sbjct: 203 WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------GSNSAPAWSPDGRTLAV 256
Query: 252 TVSADKSAKVWEILEDGSGGR 272
+S D +++++ + DGSG R
Sbjct: 257 ALSRDGNSQIYTVNADGSGLR 277
|
Length = 427 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.003
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIW 86
H PVT +SP+G+++AS G++++W
Sbjct: 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 199 SPDGSKLISVS-SDRKGLIY--DGKSG--EKIGEFSSEDGHHGSIYAVSWSPDGKKV-LT 252
SPDG KL VS +RK I+ D + EK+ +S G +G A +SPDGKK+ L
Sbjct: 226 SPDGRKLAYVSFENRKAEIFVQDIYTQVREKV---TSFPGING---APRFSPDGKKLALV 279
Query: 253 VSADKSAKVW 262
+S D +++
Sbjct: 280 LSKDGQPEIY 289
|
Length = 448 |
| >gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 197 RFSPDGSKLISVSSDRKG---LIYDGKSG--EKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251
+SPDG KL VS + + D +G EK+ F G +G A ++SPDG K+
Sbjct: 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP---GMNG---APAFSPDGSKLA 249
Query: 252 TVSA 255
+
Sbjct: 250 VSLS 253
|
Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 417 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 612 | |||
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.98 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| PTZ00421 | 493 | coronin; Provisional | 99.98 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.96 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.96 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.95 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.94 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.94 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.94 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.94 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.93 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.93 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.93 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.93 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.93 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.93 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.93 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.93 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.92 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.92 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.91 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.89 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.89 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.89 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.87 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.87 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.86 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.86 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.86 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.85 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.83 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.83 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.83 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.83 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.81 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.81 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.81 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.8 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.79 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.79 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.79 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.79 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.78 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.78 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.78 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.78 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.78 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.78 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.77 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.77 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.75 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.75 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.75 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.74 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.73 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.73 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.73 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.73 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.72 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.71 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.69 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.68 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.68 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.68 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.66 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.66 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.66 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.64 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.64 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.63 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.63 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.62 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.61 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.61 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.59 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.59 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.58 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.58 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.57 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.55 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.53 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.51 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.51 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.5 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.49 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.45 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.43 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.41 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.38 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.37 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.36 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.35 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.35 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.34 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.34 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.3 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.29 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.22 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.2 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.2 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.19 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.19 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.18 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.18 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.17 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.17 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.16 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.05 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.03 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 99.03 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.99 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.99 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.99 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.98 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.95 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.94 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.93 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.91 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.9 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.9 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.87 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.84 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.84 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.83 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.83 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.82 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.81 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.81 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.79 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.77 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.75 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.74 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.74 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.73 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.69 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.68 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.67 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.66 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.65 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.65 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.57 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.57 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.55 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.52 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.51 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.51 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.5 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.5 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.45 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.41 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.4 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.39 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.36 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.31 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.3 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.25 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.23 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.23 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 98.23 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.2 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.19 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.18 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.16 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.14 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.14 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.14 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.11 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.07 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.02 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 98.0 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.99 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.96 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.95 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.94 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.91 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.9 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.89 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.89 | |
| PRK10115 | 686 | protease 2; Provisional | 97.87 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.85 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.84 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.83 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.78 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.76 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.75 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.73 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.68 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.65 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.63 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.63 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.59 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.58 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.58 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.55 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.53 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.52 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.47 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.44 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.37 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.34 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.3 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.3 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.28 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.28 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.25 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.23 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.09 | |
| PRK10115 | 686 | protease 2; Provisional | 97.01 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.01 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.98 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.89 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 96.89 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.77 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.76 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 96.74 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.67 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.59 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.57 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.49 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.46 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.45 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.43 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.4 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.37 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.29 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.17 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.06 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.95 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.83 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.77 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.69 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.64 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.6 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.59 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.55 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.54 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.45 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 95.39 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.3 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.27 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 95.24 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.21 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.17 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.12 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 95.12 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.1 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.96 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 94.94 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 94.76 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.59 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 94.55 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.51 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.5 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.38 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.23 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.22 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.19 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 94.05 | |
| PLN02153 | 341 | epithiospecifier protein | 93.98 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.97 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.94 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.94 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 93.61 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.53 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 93.46 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.45 | |
| PLN02153 | 341 | epithiospecifier protein | 93.37 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.25 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.22 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.05 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 93.03 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 92.93 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 92.93 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 92.85 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.78 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 92.57 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.52 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 92.52 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.5 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 92.37 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 92.24 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.23 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.01 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 91.99 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 91.86 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.76 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.73 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.71 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 91.62 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.5 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.22 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.15 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 90.61 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.5 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.45 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 90.43 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 90.21 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 89.99 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 89.72 |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-89 Score=588.26 Aligned_cols=599 Identities=51% Similarity=0.866 Sum_probs=564.1
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
|.+++++++|++.|.+.|+...-+..+|.|+.|+|+.++.|.+.+++++.....+.+|..+++-..|||.|-|+|+|...
T Consensus 1 ms~~~lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 1 MSEYELKETFASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred CchhhhhhhccCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCc
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCC
Q 007229 81 GSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 81 ~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
|+|||||....+. ++.++....++|..++|++|++++++.|+++++ +..++.||+|..+..+.+|...|.+++|-|..
T Consensus 81 G~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~~F~~DSG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGHVFLWDSGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred CcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-eeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence 9999999987444 778889999999999999999999999999888 99999999999999999999999999999999
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+++++||++|++|.+|+-...+...+++.|..-|.|+.|+|||+++++++.||++.+||-.+|+.+..+....+|.+.|.
T Consensus 160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf 239 (603)
T KOG0318|consen 160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF 239 (603)
T ss_pred ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976679999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
+++|+||++.+++++.|.++++||+ .+..+++++..... ...+.++|.|.++.+++.+.+|.+.+++..... +
T Consensus 240 alsWsPDs~~~~T~SaDkt~KIWdV----s~~slv~t~~~~~~--v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~ 312 (603)
T KOG0318|consen 240 ALSWSPDSTQFLTVSADKTIKIWDV----STNSLVSTWPMGST--VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-V 312 (603)
T ss_pred EEEECCCCceEEEecCCceEEEEEe----eccceEEEeecCCc--hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-h
Confidence 9999999999999999999999999 89999999988774 778999999999999999999999999988877 8
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-ecccceEEEEeec-cEEEEecCCCeEEEEec
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-KYDARIKCLAAVE-EVIFTAGFDNKVWRVPL 397 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~~~-~~l~~~~~~~~i~~~~~ 397 (612)
...+.+|...|+++..++. +.+|++|+.||.|.-|+...+..-++.. .|...|.+++..+ +.+++.+.|.++++.++
T Consensus 313 ~~~i~GHnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL 391 (603)
T ss_pred hheecccccceeEEEEcCC-CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence 8999999999999999943 6999999999999999999998887764 3999999999955 99999999999999999
Q ss_pred CCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEE
Q 007229 398 CEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIY 477 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~ 477 (612)
............+..+|..++..+++ ..+++.....+.++.........+......+++++|++..+++|++||.|+||
T Consensus 392 ~~~~~t~~~~~~lg~QP~~lav~~d~-~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvy 470 (603)
T KOG0318|consen 392 KDNGYTKSEVVKLGSQPKGLAVLSDG-GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVY 470 (603)
T ss_pred ccCcccccceeecCCCceeEEEcCCC-CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEE
Confidence 88888877788999999999988876 67788888899999988888888899999999999999999999999999999
Q ss_pred EccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec
Q 007229 478 SISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557 (612)
Q Consensus 478 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 557 (612)
.+....+.....+..|.++|++++||||+.+||+++..+.+.+||+.+.+.....+..|...|.+++|+|+..++|+|+.
T Consensus 471 sl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 471 SLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred EecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc
Confidence 99988876677888999999999999999999999999999999999999877777889999999999999999999999
Q ss_pred CcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 558 DTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 558 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
|.+|.||+++.+. +.+....+|...|+.+.|.++..++++|.|.+|++|++.
T Consensus 551 Dt~Viiysv~kP~-~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 551 DTNVIIYSVKKPA-KHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cceEEEEEccChh-hheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 9999999999988 778889999999999999999999999999999999975
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-67 Score=468.77 Aligned_cols=567 Identities=16% Similarity=0.194 Sum_probs=486.7
Q ss_pred EEEccCCCEEEEecCCEEEEEeCCCCce-eeEe-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee-
Q 007229 24 ISGNPKTDTILYCNGRSVLIRYLDKPLH-VEFY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV- 100 (612)
Q Consensus 24 ~~~s~d~~~l~~~~~~~i~i~~~~~~~~-~~~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~- 100 (612)
++||++|+.|++..++.|.+-|+.+++. +... .+-...|++++++||+++|++++..+-+++|++.+++ +.+..+.
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk-~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK-LIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccch-HhHhHhhc
Confidence 8999999999999999999999999987 3332 2356789999999999999999999999999999998 4445665
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCE-EEEEeecCCeEEEEeCCC
Q 007229 101 LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPF-RIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 101 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~ 179 (612)
|.+++.-++|.|.+..|+++|.++ .+.+|++..+.+.+.|++|.+.|.++.|+|+-.+ +|++|..|+++++||+..
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~---~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADG---RVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccc---eEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 999999999999999999999998 6799999999999999999999999999998653 689999999999999996
Q ss_pred Cee-eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-----CCEEEEE
Q 007229 180 FKF-KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-----GKKVLTV 253 (612)
Q Consensus 180 ~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~ 253 (612)
... +..+..|...|++++|++|+..+++++.|..+.+||+.+.+....+ +-...+.++.+-++ +.+++++
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l----p~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL----PLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee----chhhheeeEEEechhcCCcceEEEEe
Confidence 554 7788999999999999999999999999999999999888888777 56677888888887 6799999
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+.+|.+++||. +++.++........+. ..-.........++..+.+..+.+|| .........+-|..+.|..+
T Consensus 257 G~~g~~~~~d~----es~~~~~~~~~~~~~e--~~~~~~~~~~~~~l~vtaeQnl~l~d-~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 257 GGSGVVQYWDS----ESGKCVYKQRQSDSEE--IDHLLAIESMSQLLLVTAEQNLFLYD-EDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred cCCceEEEEec----ccchhhhhhccCCchh--hhcceeccccCceEEEEccceEEEEE-ccccEEehhhcCCchhheee
Confidence 99999999999 8888777665554222 11222233478889999999999998 44455667788899999999
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCc---ccee
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGD---AEHI 408 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~ 408 (612)
.|..++.+.++.++..+.+++|+..+..+. +..+|...|.++.. .+..+++++.|.++++|.++++.... ....
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 999666899999999999999999988888 45559999999994 66799999999999999885444321 2234
Q ss_pred ccCCCcceeeecCCCCcEEEEEe-eccEEEeeccc-------cee-----eecccceEEEEEEccCCCeEEEEecCCeEE
Q 007229 409 DVGSQPLDLSLALSSPELALVST-ESGVILLDSLK-------VMS-----KIDLGFTVTACAIAPDGSEAIVGGQNGKLH 475 (612)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 475 (612)
.+......++++..+..+++..+ +..+.+|+-.. ... ...|...|++++++|+.+++|+|+.|.+.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence 45566777888777777666555 45578887222 111 122788999999999999999999999999
Q ss_pred EEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 476 i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
||+++...+ ..++.+|...|.++.|+|..+.+|+++.|++|+||.+.+..++ +++.||...|..+.|-.+|+.|+++
T Consensus 489 iW~le~~~l--~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 489 IWDLEQLRL--LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred eecccCceE--EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEec
Confidence 999997766 8899999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred ecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEecc
Q 007229 556 SIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 556 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
+.||-+++|++.+ . .|...+.+|.+.|.+++-+ ....++||+.||.|.+|.=.|
T Consensus 566 ~adGliKlWnikt-~-eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 566 GADGLIKLWNIKT-N-ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cCCCcEEEEeccc-h-hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999999 7 8999999999999999999 778999999999999997543
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=421.61 Aligned_cols=543 Identities=15% Similarity=0.216 Sum_probs=450.1
Q ss_pred ceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC
Q 007229 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG 81 (612)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~ 81 (612)
+++.++.+++.... --.+.|++||..+++..++.|.++|+.+.+.....-.+...|++++.||+|.+|++....|
T Consensus 3 ~efrfsNllGTvyr-----~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 3 TEFRFSNLLGTVYR-----AGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred cccchhhcccceee-----cCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCC
Confidence 55666666665552 2358999999999999999999999999887776677999999999999999999999999
Q ss_pred eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC--------CceeeeeccCCceEEEE
Q 007229 82 SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS--------GTTVGDFDGHSRRVLSC 153 (612)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~--------~~~~~~~~~~~~~v~~~ 153 (612)
...+-++..... .. ....+.+|.++.|||||+++|++..+- ++||.... -..-+++.+|-..|.++
T Consensus 78 ~~~lvs~~~r~V-lh-~f~fk~~v~~i~fSPng~~fav~~gn~----lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si 151 (893)
T KOG0291|consen 78 RALLVSLLSRSV-LH-RFNFKRGVGAIKFSPNGKFFAVGCGNL----LQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSI 151 (893)
T ss_pred cEEEEeccccee-eE-EEeecCccceEEECCCCcEEEEEecce----eEEEecCcchhcccCcceEeeeecCCccceeEE
Confidence 999988887752 22 233567999999999999999987763 55665442 12345678899999999
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC----------
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS---------- 221 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------- 221 (612)
.|+.|.+ ++++|+.|.++++|.++..+- ...+.+|.+.|.+.-|..+...+++.+.||.+.+|....
T Consensus 152 ~Ws~DSr-~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 152 DWSDDSR-LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred EeccCCc-eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccc
Confidence 9999999 599999999999999887766 555889999999999999999999999999999998761
Q ss_pred -------------CCe-----eeeee---ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 222 -------------GEK-----IGEFS---SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 222 -------------~~~-----~~~~~---~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
++. ..... -.......+++.+|++..+.|+++-..|...+|++ ....+++.+...
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel----P~f~lih~LSis 306 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL----PDFNLIHSLSIS 306 (893)
T ss_pred cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEec----CCceEEEEeecc
Confidence 111 00000 01123378999999999999999999999999999 889999888765
Q ss_pred Cccccceeeeeeecc--CCEEEEEEcC-CEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 281 TSNAVEDMLVGCLWQ--NDHLITVSLG-GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 281 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
. ..+..+.++ ++.++.|+.. |.+.+|+.. .+..+...++|...++++++++. ++++++|+.||.|++||.
T Consensus 307 ~-----~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-sEsYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 307 D-----QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-SESYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNT 379 (893)
T ss_pred c-----ceeeEEEecccCCEEEEcCCccceEEEEEee-ccceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEec
Confidence 3 456666666 8888888776 899999954 45666778899999999999932 899999999999999999
Q ss_pred CCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccE
Q 007229 358 GVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGV 435 (612)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (612)
..+.+...+..|...|+.+.| .++.+++.+.||+++.||+.....-
T Consensus 380 ~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-------------------------------- 427 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-------------------------------- 427 (893)
T ss_pred cCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee--------------------------------
Confidence 999999999999999999999 8899999999999999999876532
Q ss_pred EEeecccceeeec--ccceEEEEEEccCCCeEEEEecCC-eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE
Q 007229 436 ILLDSLKVMSKID--LGFTVTACAIAPDGSEAIVGGQNG-KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 436 ~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
+++. .+.+..|++..|.|.++.+|+.|. .|++|++++|++ .-.+.+|.+||.+++|+|++..||++
T Consensus 428 ---------RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql--lDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 428 ---------RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL--LDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred ---------eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee--eehhcCCCCcceeeEEccccCeEEec
Confidence 2222 334578899999999999999887 799999999998 78899999999999999999999999
Q ss_pred cCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcce-------------------
Q 007229 513 DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSR------------------- 573 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~------------------- 573 (612)
+.|.+||+||+-......+.+. +...+..++|+|||+.||+++.||.|.+||.+... +.
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~-q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV-QVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred cccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhce-eeccccchhhcccccccccee
Confidence 9999999999977755445555 78889999999999999999999999999997622 11
Q ss_pred eeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 574 ITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 574 ~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
...-.......+.|+|+ ||..+++||..+.|++|++.++
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 01111233578999999 9999999999999999998764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=425.81 Aligned_cols=528 Identities=20% Similarity=0.251 Sum_probs=431.8
Q ss_pred EEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee
Q 007229 65 ARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF 143 (612)
Q Consensus 65 ~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~ 143 (612)
++|+++|+.|++...| .|.+-|+.++.. +...-......+++++.+||+++|++++... .+++|.+++++.++.+
T Consensus 25 ~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~---llrv~~L~tgk~irsw 100 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQ---LLRVWSLPTGKLIRSW 100 (775)
T ss_pred eeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccc---eEEEEEcccchHhHhH
Confidence 8999999999999766 688899999985 3333334556899999999999999999988 7899999999999999
Q ss_pred cc-CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC--eEEEEEcCCcEEEEecC
Q 007229 144 DG-HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS--KLISVSSDRKGLIYDGK 220 (612)
Q Consensus 144 ~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~ 220 (612)
+. |..||..++|+|.+. ++++|+.|+.+++||+..+.+...++||.+.|.++.|+|+-+ .|++|..|+.+++||++
T Consensus 101 Ka~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred hhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence 98 999999999999996 899999999999999999999999999999999999999765 58899999999999999
Q ss_pred CCCe-eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee---ccC
Q 007229 221 SGEK-IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL---WQN 296 (612)
Q Consensus 221 ~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 296 (612)
+... +..+ ..|.+.|++++|++|+..+++++.|..+.+||+ .+.+..+..+.... .+.....-. -.+
T Consensus 180 ~~~tcl~~~---~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~----~~~~~l~~lp~ye~--~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 180 DKRTCLHTM---ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL----VQYKKLKTLPLYES--LESVVRLREELGGKG 250 (775)
T ss_pred cCchHHHHH---HhhhhheeeeeeccCCceEEEeccCcEEEEeeh----hhhhhhheechhhh--eeeEEEechhcCCcc
Confidence 6665 4444 589999999999999999999999999999999 66666666554431 111111100 014
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
..+++.+.+|.+++|+..........-+.....+..+..... ...++..+.|..+.++|.++.+......+....|..+
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~-~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIES-MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccc-cCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 689999999999999976654333322222333555555422 4566677788999999999999988888899999999
Q ss_pred Ee---eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeec----c--cceee-
Q 007229 377 AA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDS----L--KVMSK- 446 (612)
Q Consensus 377 ~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~- 446 (612)
.+ +.++++.++..+.+++++..+..+. ....+...+.++....++.-++..+.++.+++|.- . ..+..
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 99 4589999999999999988877765 33444455556664455545555666778888842 1 11111
Q ss_pred ecccceEEEEEEccCC-CeEEEEecCCeEEEEEccCcc-------cccceeeccccCceEEEEEcCCCcEEEEEcCCCeE
Q 007229 447 IDLGFTVTACAIAPDG-SEAIVGGQNGKLHIYSISGNT-------LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 518 (612)
..|...|.+++++..+ .+|++++.|.++++|++...+ +........|...|++++++|+.+++|+|+.|++.
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta 487 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA 487 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence 2288899999998755 578999999999999997622 12223456799999999999999999999999999
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
+||+++..... ..+.+|...|.++.|+|..+.|||+|.|++|+||.+++ . .|++++.||...|..+.|- +++.|+|
T Consensus 488 KiW~le~~~l~-~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-f-SClkT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 488 KIWDLEQLRLL-GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-F-SCLKTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred eeecccCceEE-EEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-c-eeeeeecCccceeEeeeeeeCCcEEEe
Confidence 99999966665 78999999999999999999999999999999999999 7 8999999999999999999 9999999
Q ss_pred ccCCCeEEEEEeccC
Q 007229 598 SGEDACIRVWRLATE 612 (612)
Q Consensus 598 ~~~d~~i~~w~~~~~ 612 (612)
++.||.|++|++++.
T Consensus 565 ~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 565 AGADGLIKLWNIKTN 579 (775)
T ss_pred ccCCCcEEEEeccch
Confidence 999999999999873
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=414.22 Aligned_cols=566 Identities=15% Similarity=0.173 Sum_probs=459.2
Q ss_pred ccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCC
Q 007229 27 NPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR 104 (612)
Q Consensus 27 s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 104 (612)
+..|++++......|.+||+.+++..+.+. .-...|+|++-+||.-.||.|-.||.|+||+..+.. +...+.+|+..
T Consensus 31 ~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-~~~tfngHK~A 109 (888)
T KOG0306|consen 31 SGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-ILITFNGHKAA 109 (888)
T ss_pred cCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc-eeeeecccccc
Confidence 346999999889999999999996554433 344689999999999999999999999999999886 56689999999
Q ss_pred eEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee
Q 007229 105 IDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184 (612)
Q Consensus 105 i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 184 (612)
|+.+.|...|.+|++++.|+. |.+|+.-....+..+.+|.+.|+..-|..+.+ .+++.+.|+.|++||+++..+..
T Consensus 110 Vt~l~fd~~G~rlaSGskDt~---IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~-~lvS~sKDs~iK~WdL~tqhCf~ 185 (888)
T KOG0306|consen 110 VTTLKFDKIGTRLASGSKDTD---IIVWDLVGEEGLFRLRGHKDSITQALFLNGDS-FLVSVSKDSMIKFWDLETQHCFE 185 (888)
T ss_pred eEEEEEcccCceEeecCCCcc---EEEEEeccceeeEEeecchHHHhHHhccCCCe-EEEEeccCceEEEEecccceeee
Confidence 999999999999999999983 45555557788899999999999999999777 69999999999999999999999
Q ss_pred cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC------------CeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG------------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
+.-.|.+.+.++++.+ +.+++++.|+.+++|++... +....+ .+...+....+...++++++++
T Consensus 186 Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~--~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 186 THVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF--IRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred EEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee--eeccCCceeEEeecCcccEEEE
Confidence 9999999999999997 78999999999999998211 111112 1123344556677778899999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEe---------eeeccCc----------------cccceeeeeeecc----CCEEEEEE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIK---------TFASSTS----------------NAVEDMLVGCLWQ----NDHLITVS 303 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~---------~~~~~~~----------------~~~~~~~~~~~~~----~~~~~~~~ 303 (612)
-+.|..+.++.+....+..+.+. ....... -.....+..+.+- ....++.-
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence 99999999998832110000000 0000000 0001111222221 22334447
Q ss_pred cCCEEEEEEcCCCCCC--------ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 304 LGGIISIFSASNLDKA--------PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
.++.+..|.+...... ...+.+|...|.++++++ .+.++..+..+.+++|+..+.++.+..... .+.+
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~ 417 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGESIKIWNRDTLKCIRTITCG--YILA 417 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCCcEEEEEccCcceeEEeccc--cEEE
Confidence 8888888887763222 245779999999999996 566666667789999999999998877533 5666
Q ss_pred EEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee-----c--cc----
Q 007229 376 LAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD-----S--LK---- 442 (612)
Q Consensus 376 ~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~---- 442 (612)
..| .+.++++|...|.+.++|+...... .....+.....+++.+|++..++..+.+..+..|+ . +.
T Consensus 418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTKNGELQVFDLASASLV-ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred EEecCCCceEEEeccCCceEEEEeehhhhh-hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 565 6778999999999999999988766 33347788899999999999999999999999997 1 11
Q ss_pred ----ceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeE
Q 007229 443 ----VMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518 (612)
Q Consensus 443 ----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 518 (612)
..+.++....|.|+.+||||++||++--|.+|+||-+++-++ ...+.+|.-||.||..|||+++++||+.|.+|
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnV 574 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNV 574 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCce
Confidence 124455778999999999999999999999999999999887 78899999999999999999999999999999
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
+||-+.-|.+. +.+.+|...|.++.|.|+..++.+++.|+.|+-||-+. . ++++.+.+|...|++++.+ +|.+++|
T Consensus 575 KiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-F-e~iq~L~~H~~ev~cLav~~~G~~vvs 651 (888)
T KOG0306|consen 575 KIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-F-EEIQKLDGHHSEVWCLAVSPNGSFVVS 651 (888)
T ss_pred EEeccccchhh-hhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-h-hhheeeccchheeeeeEEcCCCCeEEe
Confidence 99999999997 56777999999999999999999999999999999987 6 8999999999999999999 8999999
Q ss_pred ccCCCeEEEEEecc
Q 007229 598 SGEDACIRVWRLAT 611 (612)
Q Consensus 598 ~~~d~~i~~w~~~~ 611 (612)
+|.|.+|++|....
T Consensus 652 ~shD~sIRlwE~td 665 (888)
T KOG0306|consen 652 SSHDKSIRLWERTD 665 (888)
T ss_pred ccCCceeEeeeccC
Confidence 99999999998654
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=384.56 Aligned_cols=528 Identities=17% Similarity=0.238 Sum_probs=424.3
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCcee--eEeccCCCceEEEEECCCCCEEEEeeCc----CeEEEee
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHV--EFYGEHGYPVTVARYSPNGEWIASADVS----GSVRIWG 87 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~--~~~~~h~~~v~~~~~s~d~~~las~~~d----~~i~iwd 87 (612)
.+|...++-..|||.|.|+|+|. .|.|+|||....+.+ ..+..-.++|..++|++|+++|+..++. |.+.+||
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 45777899999999999999998 799999998763322 3355678899999999999998887532 4566777
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
.-+. ...+.+|...|+++.|-|... +++++++|+ .+.++.=..-+...++..|...|.++.|+|||. ++++.
T Consensus 136 SG~S---vGei~GhSr~ins~~~KpsRPfRi~T~sdDn---~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~-~Fat~ 208 (603)
T KOG0318|consen 136 SGNS---VGEITGHSRRINSVDFKPSRPFRIATGSDDN---TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS-RFATA 208 (603)
T ss_pred CCCc---cceeeccceeEeeeeccCCCceEEEeccCCC---eEEEeeCCCeeeeecccccccceeeEEECCCCC-eEEEe
Confidence 6554 358999999999999999875 678888887 344444445667778899999999999999999 69999
Q ss_pred ecCCeEEEEeCCCCeeeeccc---ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 167 GEDFLVNFYEGPPFKFKLSHR---EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
+.||.|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+.+++.++.....-......+.|
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 999999999999999999887 89999999999999999999999999999999999999998543333344555666
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
. ...|++.+.+|.|.+++. .....++.+..+... -....+..++..+++++.+|.|.-|+..........-
T Consensus 289 q--kd~lItVSl~G~in~ln~----~d~~~~~~i~GHnK~---ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 289 Q--KDHLITVSLSGTINYLNP----SDPSVLKVISGHNKS---ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred e--CCeEEEEEcCcEEEEecc----cCCChhheecccccc---eeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 5 557999999999999999 777777777766521 1223334447899999999999999988776665566
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec-eecccceEEEEe--eccEEEEecCCCeEEEEecCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE-KKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~ 400 (612)
.+|...|..++... ...+++.+.|.++++.++..+...... ........+++. ++..++.+..++.+.+-+...
T Consensus 360 ~~h~nqI~~~~~~~--~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~- 436 (603)
T KOG0318|consen 360 KGHTNQIKGMAASE--SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK- 436 (603)
T ss_pred ccccceEEEEeecC--CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc-
Confidence 88999999999886 588999999999999988655443322 113344447777 334555555555444433332
Q ss_pred CCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee--c---ccceeeecccceEEEEEEccCCCeEEEEecCCeEE
Q 007229 401 ECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--S---LKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLH 475 (612)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 475 (612)
.........+.+++++|++...++.+.+..+.++. . .+.....+|..+|+++++|||+.+||++...+.+.
T Consensus 437 ----~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 437 ----VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred ----ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence 23445677888999999999888888888888886 1 22335566999999999999999999999999999
Q ss_pred EEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 476 i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
+||+.+.+. ......-|...|.+++|+|+..++|+|+-|-.|.||+++..........+|...|+.+.|- |...|++.
T Consensus 513 ~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSs 590 (603)
T KOG0318|consen 513 LYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSS 590 (603)
T ss_pred EEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEec
Confidence 999998876 3444556999999999999999999999999999999998877667778899999999998 45678999
Q ss_pred ecCcEEEEEEcc
Q 007229 556 SIDTCVIIYEIG 567 (612)
Q Consensus 556 ~~d~~i~iwd~~ 567 (612)
+.|..|++|++.
T Consensus 591 G~Da~iK~W~v~ 602 (603)
T KOG0318|consen 591 GQDANIKVWNVT 602 (603)
T ss_pred cCcceeEEeccc
Confidence 999999999874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=394.15 Aligned_cols=367 Identities=21% Similarity=0.309 Sum_probs=305.5
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.+|.+.|.|++|+|+|+.|++|+ |.++++||+.+..+..+.++|.+.|.|++|||||+.||+|+.||+|++||.+++++
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 36889999999999999999998 78999999999999999999999999999999999999999999999999999998
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
+...+.+|...|++++|.|-. ..|..+ +|++++.||.|+
T Consensus 192 ~g~~l~gH~K~It~Lawep~h----------------------------------------l~p~~r-~las~skDg~vr 230 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLH----------------------------------------LVPPCR-RLASSSKDGSVR 230 (480)
T ss_pred ccccccCcccceeEEeecccc----------------------------------------cCCCcc-ceecccCCCCEE
Confidence 888999999999999997732 134444 699999999999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
|||+..+.++..+.+|+.+|+|+.|--+| ++++++.|++|++|+...|.+...+ .+|...|+.++.+.|- .|-+|
T Consensus 231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~l---kGHahwvN~lalsTdy-~LRtg 305 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCREL---KGHAHWVNHLALSTDY-VLRTG 305 (480)
T ss_pred EEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhh---cccchheeeeeccchh-hhhcc
Confidence 99999999999999999999999998666 8999999999999999999999988 5999999999998653 23344
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
..|. +++....+....... ...+. .+
T Consensus 306 af~~------------t~~~~~~~se~~~~A-----------------------------------l~rY~----~~--- 331 (480)
T KOG0271|consen 306 AFDH------------TGRKPKSFSEEQKKA-----------------------------------LERYE----AV--- 331 (480)
T ss_pred cccc------------ccccCCChHHHHHHH-----------------------------------HHHHH----Hh---
Confidence 4332 222221111000000 00000 00
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
....+..+++|+.|.++.+|+....+....
T Consensus 332 --~~~~~erlVSgsDd~tlflW~p~~~kkpi~------------------------------------------------ 361 (480)
T KOG0271|consen 332 --LKDSGERLVSGSDDFTLFLWNPFKSKKPIT------------------------------------------------ 361 (480)
T ss_pred --hccCcceeEEecCCceEEEecccccccchh------------------------------------------------
Confidence 011167888999999999987543321110
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH 493 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 493 (612)
+...|...|+.+.||||++++|+++-|..|++|+-.+|++ ...+.+|
T Consensus 362 -------------------------------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~--lasfRGH 408 (480)
T KOG0271|consen 362 -------------------------------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF--LASFRGH 408 (480)
T ss_pred -------------------------------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch--hhhhhhc
Confidence 1112445688999999999999999999999999999998 7899999
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
-++|..++|+.|.++|++++.|.++++||+++.++. .-+.+|..+|.++.|+|||..+++|+.|+.+++|.
T Consensus 409 v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec-ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999886 56888999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-60 Score=391.33 Aligned_cols=368 Identities=25% Similarity=0.408 Sum_probs=311.8
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
.++...+.+|.++|.+++|+|++. .|++|+.|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 345567899999999999999999 5999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEec-----CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSP-----DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
||.++|+++..- ..+|...|++++|.| ..++|++++.||.++|||+ ..+.++
T Consensus 184 wdpktg~~~g~~--l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~----~~~~~~----------------- 240 (480)
T KOG0271|consen 184 WDPKTGQQIGRA--LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT----KLGTCV----------------- 240 (480)
T ss_pred ecCCCCCccccc--ccCcccceeEEeecccccCCCccceecccCCCCEEEEEc----cCceEE-----------------
Confidence 999999988765 469999999999976 5779999999999999998 555444
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
..+.+|..+|+++.|-. ..++++|+.|++|++|+...+.+...+..|..
T Consensus 241 -----------------------------~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHah 289 (480)
T KOG0271|consen 241 -----------------------------RTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAH 289 (480)
T ss_pred -----------------------------EEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccch
Confidence 45668999999999986 68999999999999999999999999999999
Q ss_pred ceEEEEeeccEEE-EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 372 RIKCLAAVEEVIF-TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 372 ~i~~~~~~~~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
.|+.++.+.++.+ ++..|.+=+.....+ +. ..+.+..
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~s-e~-------------------------------------~~~Al~r---- 327 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFS-EE-------------------------------------QKKALER---- 327 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChH-HH-------------------------------------HHHHHHH----
Confidence 9999998655543 333222111000000 00 0000000
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 530 (612)
...+.-..+..|++|+.|.++.+|+....+ .++..+.+|..-|+.+.||||++++|+++-|..|++||-.+++.+
T Consensus 328 ---Y~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l- 402 (480)
T KOG0271|consen 328 ---YEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL- 402 (480)
T ss_pred ---HHHhhccCcceeEEecCCceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh-
Confidence 001112235789999999999999976554 236778899999999999999999999999999999999999997
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEE
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~ 608 (612)
..+.+|-.+|..++|+.|.++|++|+.|.++++|++++ . +...-+.+|.++|..+.|+ ||..+++|+.|..+++|.
T Consensus 403 asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-k-Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 403 ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-K-KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee-e-eecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 77999999999999999999999999999999999998 5 6778899999999999999 999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=375.99 Aligned_cols=493 Identities=16% Similarity=0.214 Sum_probs=402.8
Q ss_pred CCCceeEEEEccCCCEEEEecCCEEEEEeCCCCc--------eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 17 ERGRGILISGNPKTDTILYCNGRSVLIRYLDKPL--------HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~--------~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.+..|.|+.|||||+++|++.++.+.||...... +.+++.||-..|+++.||.|.++|++|+.|.+++||++
T Consensus 95 fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred ecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 4668999999999999999999999999876432 34567899999999999999999999999999999999
Q ss_pred CCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-----------------------Cce-----
Q 007229 89 HNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-----------------------GTT----- 139 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-----------------------~~~----- 139 (612)
...+. ....+.+|...|....|..|...+.+.+.++ .+.+|..+. ++.
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG---~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~ 251 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDG---ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKI 251 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCc---eEEEEEecCCCcccccccccccccccccccccchhhhcce
Confidence 87765 3457889999999999999999999999999 456665550 111
Q ss_pred ------eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC-C
Q 007229 140 ------VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD-R 212 (612)
Q Consensus 140 ------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g 212 (612)
..-+......|++.+|++.-. +|++|-..|...+|+++...+++.+.-...+|..++|+..|.+|+.|+.. |
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klg 330 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLG 330 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccc
Confidence 111233447899999999988 79999999999999999999999998888899999999999999998875 8
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
.+.||+.++...+.+. .+|...+.+++++|||+++++|++||.|++||. ..+-+..+|..+. ..+.++
T Consensus 331 QLlVweWqsEsYVlKQ---QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~----~SgfC~vTFteHt-----s~Vt~v 398 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQ---QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT----QSGFCFVTFTEHT-----SGVTAV 398 (893)
T ss_pred eEEEEEeeccceeeec---cccccceeeEEECCCCcEEEeccCCCcEEEEec----cCceEEEEeccCC-----CceEEE
Confidence 9999999987777666 499999999999999999999999999999999 9999999998776 345555
Q ss_pred ecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcc-cceeEEEEEecCCcEEEEEecCC-cEEEEEcCCceeeeecee
Q 007229 293 LWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHV-KNVSTLTALKISQQTILSSSYDG-AIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 293 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~ 368 (612)
.|. ++.+++.+-||+|+.||+..... .+++.... ....+++. ++.+.++++|+.|. .|.+|++++++....+.+
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 555 88999999999999999765433 33333222 22333333 44478888888875 699999999999999999
Q ss_pred cccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceee
Q 007229 369 YDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSK 446 (612)
Q Consensus 369 ~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (612)
|.++|.++++ .+..|++++.|.+|++|++-... ....+
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----------------------------------------~~vEt 516 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----------------------------------------GTVET 516 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEEeeccC----------------------------------------ceeee
Confidence 9999999888 78999999999999999986543 23455
Q ss_pred ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccc----cce--------------eeccccCceEEEEEcCCCcE
Q 007229 447 IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT----EEM--------------VLEKHRGAITVIQYSPDVSM 508 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~--------------~~~~~~~~i~~~~~s~~~~~ 508 (612)
++....+..++|+|||+.||+++-||.|.+||...+... ... .-......++.+++|+||.+
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~ 596 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC 596 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence 667778999999999999999999999999998765431 000 00122357899999999999
Q ss_pred EEEEcCCCeEEEEecCCcceeeecc-------------------------------------------cc----------
Q 007229 509 FASADGNREAIVWDRVSKEVKLNNM-------------------------------------------LF---------- 535 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------------------------~~---------- 535 (612)
+++|+..+.|++|++.++-.+.+.. .+
T Consensus 597 IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr 676 (893)
T KOG0291|consen 597 ILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR 676 (893)
T ss_pred EEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccc
Confidence 9999999999999998765531100 00
Q ss_pred --cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 536 --HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 536 --~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..-.|.++.|+|.|+-+|.++..| +.||.+.+
T Consensus 677 ~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 677 FRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred cCceEEEEEEEECCCcCeeeeecccc-eEEEecCC
Confidence 012478899999999999999998 88998865
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=366.49 Aligned_cols=535 Identities=14% Similarity=0.155 Sum_probs=428.3
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
+..++|+.-+||.-+||+|. ||.|.||+..++.....+.||...|+++.|...|..||+||.|+.|.+||+-... -..
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-Gl~ 143 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-GLF 143 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-eeE
Confidence 45789999999999999998 8999999999999999999999999999999999999999999999999998877 445
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 176 (612)
.+.+|+..|+.+-|..+.+.|++++.|+ ++++|+.++..+..+.-.|...+..+++.++ ++++++.|+.+++|+
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs---~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~---~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDS---MIKFWDLETQHCFETHVDHRGEIWALVLDEK---LLVTAGTDSELKVWE 217 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCc---eEEEEecccceeeeEEecccceEEEEEEecc---eEEEEecCCceEEEE
Confidence 8999999999999999999999999998 7899999999999999999999999999994 799999999999999
Q ss_pred CCC----------Cee--eec-ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec-------------
Q 007229 177 GPP----------FKF--KLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS------------- 230 (612)
Q Consensus 177 ~~~----------~~~--~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------- 230 (612)
+.. ... ..+ .+...+....++..+++++++.-+.|..+.++.+.+.+.+.....
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence 721 000 001 122334455667778888999999999999998865432211100
Q ss_pred ------------------cCCccccEEEEEEecCCC---EEEEEeCCCcEEEEEeecCCCC-CeeEeeeeccCcccccee
Q 007229 231 ------------------EDGHHGSIYAVSWSPDGK---KVLTVSADKSAKVWEILEDGSG-GRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 231 ------------------~~~~~~~v~~i~~~~~~~---~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~ 288 (612)
.-.....+.++.|.|.++ .|+. -.++++.+|.+.....+ .++... ...........
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~-~~i~~~GHR~d 375 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRT-SNIEIGGHRSD 375 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCcccccc-ceeeeccchhh
Confidence 002345678888888543 3343 56788999998542222 111111 11111223345
Q ss_pred eeeeecc-CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 289 LVGCLWQ-NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 289 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
+.++.++ ++.++..+.++.+++|+... .+.++++... .+.+..|.+ .+.+++.|...|.+.++|+..........
T Consensus 376 VRsl~vS~d~~~~~Sga~~SikiWn~~t-~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAGESIKIWNRDT-LKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred eeEEEeecCceeeeecCCCcEEEEEccC-cceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 5566666 55566666788999999554 3444444322 566666664 27889999999999999999999998888
Q ss_pred ecccceEEEEe--eccEEEEecCCCeEEEEecCCCCC-----------CccceeccCCCcceeeecCCCCcEEEEEeecc
Q 007229 368 KYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGEC-----------GDAEHIDVGSQPLDLSLALSSPELALVSTESG 434 (612)
Q Consensus 368 ~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (612)
.|++.++.++. ++..+++++.|.++++|+..--.. ......++...+.+++++|++..+++.--++.
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 89999999998 888999999999999999642211 12245677888999999999988888777887
Q ss_pred EEEee--cccceeee-cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEE
Q 007229 435 VILLD--SLKVMSKI-DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511 (612)
Q Consensus 435 ~~~~~--~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (612)
+.++. +.+..-.+ .|+-||.|+.+|||++++++|+.|..|++|-++-|.+ ...+-+|...|.++.|-|+...+.+
T Consensus 532 VkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC--HKS~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC--HKSFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred EEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh--hhhhhcccCceeEEEEcccceeEEE
Confidence 77664 55544444 3899999999999999999999999999999999988 7889999999999999999999999
Q ss_pred EcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 512 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++.|+.|+-||-...+.+ ..+.+|...|.|++.+|+|.++++++.|.+|++|....
T Consensus 610 ~gKD~kvKqWDg~kFe~i-q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKFEEI-QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ecCcceEEeechhhhhhh-eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999887 66888999999999999999999999999999998765
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-50 Score=361.62 Aligned_cols=552 Identities=16% Similarity=0.209 Sum_probs=418.5
Q ss_pred eEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee--CcC
Q 007229 4 VHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD--VSG 81 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~--~d~ 81 (612)
+.|+++++-.-... ..++.+|-..++||..+..|.+||.+..++-+.+..|..+++|++||++|+|+|+|- ...
T Consensus 27 ~~L~kVlGlTv~~~----~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~p 102 (1080)
T KOG1408|consen 27 LILQKVLGLTVKNA----NGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTP 102 (1080)
T ss_pred hhhHhhhceEeecC----CcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCc
Confidence 44555555444333 368899999999999999999999999999888999999999999999999999985 667
Q ss_pred eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCE
Q 007229 82 SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPF 161 (612)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (612)
.++||++.... ...++..|+..++|++|+|.++|+++.|...+. .+.+|+|........ ..-...|..++|+.++.|
T Consensus 103 a~kVw~la~h~-vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDM-IVnv~dWr~N~~~as-nkiss~Vsav~fsEdgSY 179 (1080)
T KOG1408|consen 103 ASKVWSLAFHG-VVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDM-IVNVNDWRVNSSGAS-NKISSVVSAVAFSEDGSY 179 (1080)
T ss_pred cceeeeecccc-chhhhhhccccceeeeecCCCcEEEeeccccce-EEEhhhhhhcccccc-cccceeEEEEEEccCCce
Confidence 79999999887 566899999999999999999999999988876 778888875433322 224578999999999996
Q ss_pred EEEEeecCCeEEEEeCCCCeeeec---c----------------------------------ccc---------------
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLS---H----------------------------------REH--------------- 189 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~---~----------------------------------~~~--------------- 189 (612)
++|.+. ..|++|.++.++.... + .||
T Consensus 180 -fvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVq 257 (1080)
T KOG1408|consen 180 -FVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQ 257 (1080)
T ss_pred -eeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhh
Confidence 777764 4699998765541110 0 011
Q ss_pred --ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC---------------------CccccEEEEEEecC
Q 007229 190 --SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---------------------GHHGSIYAVSWSPD 246 (612)
Q Consensus 190 --~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------------------~~~~~v~~i~~~~~ 246 (612)
.....|++.+ .+++++|+.+|.|++|+.++-....++.... +.-....++.|++.
T Consensus 258 cRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet 335 (1080)
T KOG1408|consen 258 CRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET 335 (1080)
T ss_pred hhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCC
Confidence 0112344444 6799999999999999988766555443111 11122457789998
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc-cccce------eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS-NAVED------MLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
...|.+...|..+++||+++...-+++-..+..... ..++. .........+.+++++.|++|++|++......
T Consensus 336 ~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn 415 (1080)
T KOG1408|consen 336 TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNN 415 (1080)
T ss_pred CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccc
Confidence 899999999999999999766555555443332211 00000 01111223566899999999999997651100
Q ss_pred ------------------------------------ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 320 ------------------------------------PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 320 ------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
....-+....+.+++.++ +++.|++|..-|.+++|++...+..
T Consensus 416 ~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~ 494 (1080)
T KOG1408|consen 416 QVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYT 494 (1080)
T ss_pred ceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhh
Confidence 000112334678888873 2899999999999999999998888
Q ss_pred eeceecccceEEEEe-----eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEe
Q 007229 364 KLEKKYDARIKCLAA-----VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILL 438 (612)
Q Consensus 364 ~~~~~~~~~i~~~~~-----~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (612)
.....|...|.|+.+ ..+.|++++.|..|.++|....-.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~------------------------------------ 538 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD------------------------------------ 538 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc------------------------------------
Confidence 888889999999999 457899999999999999875542
Q ss_pred ecccceeeec-ccceEEEEEEccCC--CeEEEEecCCeEEEEEcc---CcccccceeeccccCceEEEEEcCCCcEEEEE
Q 007229 439 DSLKVMSKID-LGFTVTACAIAPDG--SEAIVGGQNGKLHIYSIS---GNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 439 ~~~~~~~~~~-~~~~i~~~~~s~~~--~~l~~~~~dg~v~i~d~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
.++++. |...|+++.|...| ..+++++.|..|.+--.+ .+.+.+...-.-....+..|+..|..++++++
T Consensus 539 ----l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 539 ----LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred ----hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence 233343 67789999998877 778888888877654433 12222122222223568999999999999999
Q ss_pred cCCCeEEEEecCCcceeeeccc---ccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEE
Q 007229 513 DGNREAIVWDRVSKEVKLNNML---FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAF 589 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 589 (612)
+.|+.|+|||+++++.. +.+. +|.+..-.+...|.|.|||+...|+++.++|+.+ + +++..+.+|...|+.+.|
T Consensus 615 cQDrnirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s-g-EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS-G-ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred ecccceEEEecccccee-eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc-c-hhhhhhcCcchheeeeee
Confidence 99999999999999986 4444 3566788899999999999999999999999999 7 899999999999999999
Q ss_pred e-cCceEEEccCCCeEEEEEec
Q 007229 590 M-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 590 ~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
+ |-+.|++++.||+|.+|.+.
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cccchhheeecCCceEEEEECc
Confidence 9 99999999999999999985
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=315.83 Aligned_cols=541 Identities=18% Similarity=0.252 Sum_probs=405.1
Q ss_pred eeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC-
Q 007229 3 EVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG- 81 (612)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~- 81 (612)
.+.++++++-.-. .--..+-+-|.|..+.+ ..+.+.+++.+... ++.+.||+..|.|++.+||.-.+|+|-..|
T Consensus 53 kl~LewvygYRG~---dcR~Nly~lptgE~vyf-vA~V~Vl~n~ee~~-Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~ 127 (626)
T KOG2106|consen 53 KLKLEWVYGYRGV---DCRNNLYLLPTGELVYF-VAAVGVLYNWEERS-QRHYLGHNDDIKCMAVHPDRIRVATGQGAGT 127 (626)
T ss_pred CceeEEEEeecce---eeeceeEEccCccEEEE-eccEEEEEeehhhh-cccccCCCCceEEEeecCCceeeccCccccc
Confidence 3555666554332 12235667787765444 45666777876533 444779999999999999999999875444
Q ss_pred -------eEEEeecCCCceeeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEE
Q 007229 82 -------SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSC 153 (612)
Q Consensus 82 -------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~ 153 (612)
.+++||..+...+ ..+......|.+++||+ ++..++..-+++..+.+.+|+|+.+......+...+.|...
T Consensus 128 ~g~~~~phvriWdsv~L~TL-~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a 206 (626)
T KOG2106|consen 128 SGRPLQPHVRIWDSVTLSTL-HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLA 206 (626)
T ss_pred CCCcCCCeeeecccccceee-eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEE
Confidence 4999998877633 35557778999999998 33344444455555589999999999999888899999999
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeec---cccc-ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS---HREH-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
.|+|.++.++++++ .+.+.+|+.+.+.+.+. ++.+ ..-|.|++|.++|. +++|..+|.|.||+..+.+..+..
T Consensus 207 ~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~- 283 (626)
T KOG2106|consen 207 TFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV- 283 (626)
T ss_pred EeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe-
Confidence 99999998777776 56799999988876654 3322 26799999999996 889999999999998777666666
Q ss_pred ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
..|++.|.+++...+|. |++|+.|..|..||- ..+.++..+.+. ....+..+......+++|+..+.|.
T Consensus 284 --~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~-----~y~k~r~~elPe---~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 284 --HAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD-----NYRKLRETELPE---QFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred --eecCCceEEEEEecCcc-EeecCccceEEeccc-----cccccccccCch---hcCCeeEEecCCCcEEEeeccceEE
Confidence 28999999999999997 555999999999993 344444433332 2234444455545588888888777
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-eccEEEEecC
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-VEEVIFTAGF 388 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~ 388 (612)
.=.+.... .....+|......++..+. .+.+++++.|+.+++|+ ............+..|+.| ..+.++.+..
T Consensus 353 ~Gt~~~~f--~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~ 426 (626)
T KOG2106|consen 353 QGTLENGF--TLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN---DHKLEWTKIIEDPAECADFHPSGVVAVGTA 426 (626)
T ss_pred EeeecCCc--eEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc---CCceeEEEEecCceeEeeccCcceEEEeec
Confidence 66655433 3456678889999988832 78899999999999999 2333333336777888888 3338888889
Q ss_pred CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEE
Q 007229 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVG 468 (612)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 468 (612)
.|...+.|.++.... .....+.++++++|+|+|.+||+|
T Consensus 427 ~G~w~V~d~e~~~lv-----------------------------------------~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLV-----------------------------------------TIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred cceEEEEecccceeE-----------------------------------------EEEecCCceEEEEEcCCCCEEEEe
Confidence 998888888764322 111235689999999999999999
Q ss_pred ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee----------------eec
Q 007229 469 GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK----------------LNN 532 (612)
Q Consensus 469 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~----------------~~~ 532 (612)
+.|+.|++|.++.+.....+.-..+..+|+.+.||+|+++|.+-+.|-.|..|.....+.. +..
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 9999999999976654334444445589999999999999999999999999944332221 001
Q ss_pred -ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCC-cceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 533 -MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPA-SSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 533 -~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
...|...|..++-+.+.++||+|.+.|.|++|...-.. ......+.+|++.|++++|+ .+..|++.+.|.+|..|++
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 12355667788888889999999999999999986421 14567788999999999999 8888888889999999997
Q ss_pred c
Q 007229 610 A 610 (612)
Q Consensus 610 ~ 610 (612)
.
T Consensus 626 v 626 (626)
T KOG2106|consen 626 V 626 (626)
T ss_pred C
Confidence 3
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=330.76 Aligned_cols=281 Identities=21% Similarity=0.262 Sum_probs=262.1
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeecCCCc
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~~~~~ 92 (612)
.....+..+.||+|++.||+|+ +|.+.||+..+...+++|.||...|.++.|+|. +..|||++.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 4456889999999999999999 999999999999999999999999999999996 6799999999999999999977
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
+...+.+|...|..++|+|+|++|++++.|. .-++|+..++..+....||...|.+++|.|||. +++||+.|..-
T Consensus 253 -~l~~l~gH~~RVs~VafHPsG~~L~TasfD~---tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~ 327 (459)
T KOG0272|consen 253 -PLQDLEGHLARVSRVAFHPSGKFLGTASFDS---TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLG 327 (459)
T ss_pred -chhhhhcchhhheeeeecCCCceeeeccccc---chhhcccccchhhHhhcccccccceeEecCCCc-eeeccCccchh
Confidence 5668999999999999999999999999998 468999999999999999999999999999999 79999999999
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVL 251 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~ 251 (612)
+|||+++++++..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+..+ .+|..-|+.++|+| .|.+|+
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec---ccccchhhheEecccCCeEEE
Confidence 99999999999999999999999999999999999999999999999999998888 39999999999998 789999
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccccee
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 331 (612)
+++.|+++++|.. .+.. +...+.||.+.|.
T Consensus 405 TasyD~t~kiWs~----~~~~----------------------------------------------~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 405 TASYDNTVKIWST----RTWS----------------------------------------------PLKSLAGHEGKVI 434 (459)
T ss_pred EcccCcceeeecC----CCcc----------------------------------------------cchhhcCCccceE
Confidence 9999999999997 4444 3456778999999
Q ss_pred EEEEE-ecCCcEEEEEecCCcEEEEE
Q 007229 332 TLTAL-KISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 332 ~~~~~-~~~~~~l~~~~~dg~i~~wd 356 (612)
++.++ + ++.+++++.|.++++|.
T Consensus 435 s~Dis~d--~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPD--SQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccC--CceEEEeccCceeeecc
Confidence 99999 5 89999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=300.28 Aligned_cols=289 Identities=18% Similarity=0.310 Sum_probs=258.0
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
.++|+||.+.|.++.|++|.++|+++|.||.+.|||.-+.. ..+.++-....|..++|+|.|+++|.+|-++ .-.|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-K~haipl~s~WVMtCA~sPSg~~VAcGGLdN---~Csi 123 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-KVHAIPLPSSWVMTCAYSPSGNFVACGGLDN---KCSI 123 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-ceeEEecCceeEEEEEECCCCCeEEecCcCc---eeEE
Confidence 47799999999999999999999999999999999998876 4456777788999999999999999999988 4577
Q ss_pred EEecCC------ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECC-CCCe
Q 007229 132 FMWDSG------TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP-DGSK 204 (612)
Q Consensus 132 ~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 204 (612)
+...+. +..+.+.+|++.+.++.|.+|+. ++|++.|.+..+||+++++.+..+.+|.+.|.+++++| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 777643 45677999999999999999774 99999999999999999999999999999999999999 9999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
+++|+.|+..++||++.+.+.+.| .+|...|.+++|.|+|.-+++|+.|++.++||+ +..+.+..+...
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF---~ghesDINsv~ffP~G~afatGSDD~tcRlyDl----RaD~~~a~ys~~---- 270 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTF---EGHESDINSVRFFPSGDAFATGSDDATCRLYDL----RADQELAVYSHD---- 270 (343)
T ss_pred EEecccccceeeeeccCcceeEee---cccccccceEEEccCCCeeeecCCCceeEEEee----cCCcEEeeeccC----
Confidence 999999999999999999999999 499999999999999999999999999999999 433333222110
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
.
T Consensus 271 -----------------------------------------------------------------~-------------- 271 (343)
T KOG0286|consen 271 -----------------------------------------------------------------S-------------- 271 (343)
T ss_pred -----------------------------------------------------------------c--------------
Confidence 0
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 272 -------------------------------------------------------------------------------- 271 (343)
T KOG0286|consen 272 -------------------------------------------------------------------------------- 271 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
...+|++++||..|++|++|..|..+.+||.-.++. ...+.+|.++|+++..+|||..+++|+.|.+++||.
T Consensus 272 ----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 ----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER--VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----ccCCceeEEEcccccEEEeeecCCceeEeeccccce--EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 012589999999999999999999999999987776 788999999999999999999999999999999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=326.76 Aligned_cols=577 Identities=20% Similarity=0.233 Sum_probs=401.1
Q ss_pred EEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCC---EEEEeeCcCeEEEeecCCCc-eeeeee
Q 007229 23 LISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGE---WIASADVSGSVRIWGTHNGF-VLKNEF 98 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~---~las~~~d~~i~iwd~~~~~-~~~~~~ 98 (612)
..++.| +..+|+|.+..|.+||..+......+.||..+|+|+.|-|+.+ ++++|+.|+.|++|.+.... .....+
T Consensus 19 v~sw~~-~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~ 97 (764)
T KOG1063|consen 19 VSSWGP-GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI 97 (764)
T ss_pred cccccc-cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee
Confidence 344544 4578999999999999999888888999999999999999888 89999999999999999333 233344
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeec--cCCceEEEEEEcC-CCCEEEEEeecCCeEE
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFD--GHSRRVLSCEFKP-TRPFRIATCGEDFLVN 173 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~--~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~ 173 (612)
.+|... ++++............++ .+.+|+-+..+ +...+. ...-...|+++.| .+.++++.|+.+..|.
T Consensus 98 ~g~~~~--~~cv~a~~~~~~~~~ad~---~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~ 172 (764)
T KOG1063|consen 98 QGHCKE--CVCVVARSSVMTCKAADG---TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVD 172 (764)
T ss_pred cCccee--EEEEEeeeeEEEeeccCc---eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEE
Confidence 444444 444443333332223333 34555553333 222222 2222335666666 6677889999999999
Q ss_pred EEeCCC--CeeeecccccccceEEEEECCCCC---eEEEEEcCCcEEEEecCCCCe---------------------eee
Q 007229 174 FYEGPP--FKFKLSHREHSNFVNCIRFSPDGS---KLISVSSDRKGLIYDGKSGEK---------------------IGE 227 (612)
Q Consensus 174 ~wd~~~--~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~---------------------~~~ 227 (612)
++.-.. .+....+.||.+.|.+++|...+. +|++++.|..||||.+.-+.. ...
T Consensus 173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 997553 455667899999999999987544 889999999999998753330 001
Q ss_pred e-------eccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC--CE
Q 007229 228 F-------SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN--DH 298 (612)
Q Consensus 228 ~-------~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 298 (612)
+ ....+|...|.++.|+|.+..|++++.|.++.+|...+ .++--+...............+++.|++ +.
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~--~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE--NTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCC--ccceEEEEEEeecccccccceeeEEEcCCCCE
Confidence 1 01238999999999999999999999999999999732 3444555555554444445577777774 45
Q ss_pred EEEEEcCCEEEEEEcCCC--CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee----eeeceecccc
Q 007229 299 LITVSLGGIISIFSASNL--DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS----SKLEKKYDAR 372 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~ 372 (612)
+++-+..|..++|...+. ..+.....||.+.|..+.|.+. +.++++.+.|.+-|++-.-..+. ....+.|...
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps-GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD 409 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS-GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD 409 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCC-CCEEEEeccccceeeecccccccceeeeccccccccc
Confidence 888889999999993332 2345567899999999999943 78999999999999986552221 2223339999
Q ss_pred eEEEEe-e-ccEEEEecCCCeEEEEecCCCCCCcc------ceeccCCCcceeeec---CCCCcEE----------EEEe
Q 007229 373 IKCLAA-V-EEVIFTAGFDNKVWRVPLCEGECGDA------EHIDVGSQPLDLSLA---LSSPELA----------LVST 431 (612)
Q Consensus 373 i~~~~~-~-~~~l~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~----------~~~~ 431 (612)
+.|+++ + +-.++++..+..+|+++.+..-.... ........+....++ ...+... +...
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 999999 4 55677777777889998764321100 000000111111110 0000000 0000
Q ss_pred ec-----cEEEeec------------ccceeeecccceEEEEEEccCCCeEEEEecCC-----eEEEEEccCccccccee
Q 007229 432 ES-----GVILLDS------------LKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-----KLHIYSISGNTLTEEMV 489 (612)
Q Consensus 432 ~~-----~~~~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~ 489 (612)
.. ...+..+ .+..+.+.|.+.|.+++.+|+++++|+++... .|++|+..+-.. ...
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~~ 567 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--VQE 567 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh--hhe
Confidence 00 0000000 01112233889999999999999999998654 699999987765 567
Q ss_pred eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee---eecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 490 LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK---LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
+.+|+-.|+.|+||||+++|++.+.|+++.+|........ +.....|..-|.++.|+|++.++||+|.|++|++|..
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 9999999999999999999999999999999987554332 2336779999999999999999999999999999999
Q ss_pred cCCCcceee--eecccccCeeeEEEe--cCc----eEEEccCCCeEEEEEec
Q 007229 567 GKPASSRIT--IKNAHLGGVYGVAFM--DDF----NVVSSGEDACIRVWRLA 610 (612)
Q Consensus 567 ~~~~~~~~~--~~~~h~~~v~~~~~~--~~~----~l~s~~~d~~i~~w~~~ 610 (612)
.....+.+. ....+..+|++++|. +.. .++.|-+.|.|.+|+.+
T Consensus 648 ~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 648 PDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 874111221 344688899999997 222 35667789999999965
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=320.46 Aligned_cols=282 Identities=23% Similarity=0.336 Sum_probs=264.2
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEe
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~ 134 (612)
|.+.+|..+.||+|++.|||||.+|.++||+..+.. +...+.+|...+.++.|+|. +..||+++.|+ .+++|..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg---tvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-LLQTLRGHTSRVGAAVFHPVDSDLNLATASADG---TVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-eeEEEeccccceeeEEEccCCCccceeeeccCC---ceeeecc
Confidence 567899999999999999999999999999999996 77899999999999999997 67999999999 5688888
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
+...++..+.+|...|..++|+|+|++ |+|++.|.+-++||+.++..+....||...|.+++|.|||.++++|+.|..-
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 888999999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
+|||+++|.++..+ .+|..+|.+++|+|+|..|++|+.|++++|||+ +....
T Consensus 328 RvWDlRtgr~im~L---~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL----R~r~~--------------------- 379 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFL---AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL----RMRSE--------------------- 379 (459)
T ss_pred heeecccCcEEEEe---cccccceeeEeECCCceEEeecCCCCcEEEeee----ccccc---------------------
Confidence 99999999999998 489999999999999999999999999999999 43333
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
...+++|.+-|+.+.|.+..+.+|++++.|+++++|...+..+.....+|.+.|.
T Consensus 380 -------------------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 380 -------------------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred -------------------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 3456679999999999977799999999999999999999999999999999999
Q ss_pred EEEe--eccEEEEecCCCeEEEEe
Q 007229 375 CLAA--VEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 375 ~~~~--~~~~l~~~~~~~~i~~~~ 396 (612)
++.. +++.+++++.|.++++|.
T Consensus 435 s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCCceEEEeccCceeeecc
Confidence 9998 788899999999999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=324.90 Aligned_cols=505 Identities=16% Similarity=0.196 Sum_probs=373.0
Q ss_pred CCCCCceeEEEEccCCCEEEEec-C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC--cCeEEEeecC
Q 007229 15 STERGRGILISGNPKTDTILYCN-G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV--SGSVRIWGTH 89 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~--d~~i~iwd~~ 89 (612)
.++|..++|+|||++|+|+|+|. + ..++||+++....+..|..|...|+|++|+|.++|+++.+. |-.|.+||..
T Consensus 75 nssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr 154 (1080)
T KOG1408|consen 75 NSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWR 154 (1080)
T ss_pred cccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhh
Confidence 35778999999999999999997 3 58999999999999999999999999999999999998764 5568889887
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-------------e-------------
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-------------F------------- 143 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-------------~------------- 143 (612)
... ...-..-...|..++|+.||.|+++.+... +.+|.++.+++... +
T Consensus 155 ~N~--~~asnkiss~Vsav~fsEdgSYfvT~gnrH----vk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~g 228 (1080)
T KOG1408|consen 155 VNS--SGASNKISSVVSAVAFSEDGSYFVTSGNRH----VKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVG 228 (1080)
T ss_pred hcc--cccccccceeEEEEEEccCCceeeeeeeee----EEEEEeeccccccCCccccchhhhccccccchhhhhhhcCc
Confidence 553 222333456799999999999999999875 67887775542110 0
Q ss_pred -----------ccC-----------------CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-c-----
Q 007229 144 -----------DGH-----------------SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-H----- 189 (612)
Q Consensus 144 -----------~~~-----------------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~----- 189 (612)
.|| +....||+.+.+ ++++|..+|.|++|+..+.....+++. |
T Consensus 229 icAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r---~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d 305 (1080)
T KOG1408|consen 229 ICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSR---LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSD 305 (1080)
T ss_pred ccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecc---eEEEeeccceeeecCcchhhhccccccccccccc
Confidence 000 011123333333 699999999999999776555444321 0
Q ss_pred ------------------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-----
Q 007229 190 ------------------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD----- 246 (612)
Q Consensus 190 ------------------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~----- 246 (612)
-....++.|.|....|.+...|..++|||+++-..+......-.|...|+.+.-.|-
T Consensus 306 ~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~ 385 (1080)
T KOG1408|consen 306 TANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP 385 (1080)
T ss_pred hhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc
Confidence 012356789998899999999999999999886655443333378888887765551
Q ss_pred ------CCEEEEEeCCCcEEEEEeecCCCCCeeE-eeee---------cc--------C-------------ccccceee
Q 007229 247 ------GKKVLTVSADKSAKVWEILEDGSGGRVI-KTFA---------SS--------T-------------SNAVEDML 289 (612)
Q Consensus 247 ------~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~---------~~--------~-------------~~~~~~~~ 289 (612)
...+++++.|++|++|++..-. .+... +.+. .. . .....-..
T Consensus 386 ~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~ 464 (1080)
T KOG1408|consen 386 TAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRA 464 (1080)
T ss_pred ccccCCccceeEecCCCcEEEeeccccc-ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEE
Confidence 1248899999999999994210 11110 0000 00 0 00111233
Q ss_pred eeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE--ecCCcEEEEEecCCcEEEEEcCCceee-eec
Q 007229 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL--KISQQTILSSSYDGAIIKWIRGVGYSS-KLE 366 (612)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~ 366 (612)
.++..+++++++|...|.+++|++.... ....+..|...|.++.++ ....++|++++.|.-|.++|...+... ...
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence 4445558899999999999999977644 345677899999999999 344678999999999999999766544 455
Q ss_pred eecccceEEEEe--ec--cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 367 KKYDARIKCLAA--VE--EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 367 ~~~~~~i~~~~~--~~--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
..|...|+++.| .+ ..+++++.|..+.+--..+.... .++.
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g--------------------------------~~f~--- 588 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG--------------------------------RLFP--- 588 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCc--------------------------------eecc---
Confidence 569999999999 33 56888888886654322211100 0000
Q ss_pred ceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec---cccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE---KHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
.......+..+..+++.|..+++++++.|..|+||++++++. .+.++ .|.+....+...|.|.|||+.+.|+++.
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce--eeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 000011234688999999999999999999999999999987 45554 4667788899999999999999999999
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++|..+++++ ....+|...|+.+.|++|-+.|++.+.||+|.||.+..
T Consensus 667 ~~Df~sgEcv-A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECV-AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhh-hhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999998 66778999999999999999999999999999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=281.91 Aligned_cols=295 Identities=19% Similarity=0.263 Sum_probs=248.1
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEec--CCEEEEEeCC-----CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeE
Q 007229 11 ACAPSTERGRGILISGNPKTDTILYCN--GRSVLIRYLD-----KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSV 83 (612)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i 83 (612)
......|++.|+.++..+++.-+++.. |..+.+|++. .|..++.+.||+..|+.++.++||++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 334456789999999999977666665 8999999875 577789999999999999999999999999999999
Q ss_pred EEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccC--CceEEEEEEcCCC-
Q 007229 84 RIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGH--SRRVLSCEFKPTR- 159 (612)
Q Consensus 84 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~--~~~v~~~~~~~~~- 159 (612)
++||+.+++ ..+.+.+|...|.+++|+||.+.+++++.|. .+.+|+ .+.+..++..+ .+.|.|+.|+|+.
T Consensus 88 rlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDk-----Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 88 RLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK-----TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred EEEEecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcc-----eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 999999997 6679999999999999999999999999998 466677 45566665544 7899999999984
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+.++++++.|++|++||+.+.+....+.+|++.++.+++||||..+++|+.||.+.+||++.++.++.+ .+...|.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl----~a~~~v~ 237 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL----EAFDIVN 237 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----cCCCeEe
Confidence 337999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
+++|+|+.-.|+.+ .+..|+|||+ +++.++..+.......
T Consensus 238 sl~fspnrywL~~a-t~~sIkIwdl----~~~~~v~~l~~d~~g~----------------------------------- 277 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAA-TATSIKIWDL----ESKAVVEELKLDGIGP----------------------------------- 277 (315)
T ss_pred eEEecCCceeEeec-cCCceEEEec----cchhhhhhcccccccc-----------------------------------
Confidence 99999987666655 4557999999 8888887776543111
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
..........+++|+ .++..|++|..|+.|++|.+.
T Consensus 278 --s~~~~~~~clslaws-~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 --SSKAGDPICLSLAWS-ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred --ccccCCcEEEEEEEc-CCCcEEEeeecCCcEEEEEee
Confidence 111122233455555 238899999999999999754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=307.02 Aligned_cols=464 Identities=17% Similarity=0.235 Sum_probs=339.2
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+|.++.|+|...+++++- +|.|.|||.++...++.+.-.+-+|.+..|-+-.+++++|++|..|+||++.+.+ ..
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-kV 90 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-KV 90 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce-ee
Confidence 456899999999999999987 9999999999999999999999999999999999999999999999999999999 55
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
+.+..|..-|++++.+|...+++++++|- .|++|+|+ ...+.++|.||...|.+++|+|.++..+++++-|++|++
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm---~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDM---TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCcc---EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 69999999999999999999999999998 78999999 567889999999999999999999889999999999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCC--CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDG--SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
|.+.+..+..++.+|...|+|+.|-+-| .+|++|+.|.+++|||.++..+++++ .+|...|..++|+|.-..+++
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL---eGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL---EGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh---hcccccceEEEecCCCcEEEE
Confidence 9999999999999999999999998754 69999999999999999999999999 599999999999999999999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
|++||++++|+. .+.++..++... ...+++
T Consensus 245 gsEDGTvriWhs----~Ty~lE~tLn~g----------------------------------------------leRvW~ 274 (794)
T KOG0276|consen 245 GSEDGTVRIWNS----KTYKLEKTLNYG----------------------------------------------LERVWC 274 (794)
T ss_pred ecCCccEEEecC----cceehhhhhhcC----------------------------------------------CceEEE
Confidence 999999999998 666655554432 223333
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCC-eEEEE------ecCCCCCCcc
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN-KVWRV------PLCEGECGDA 405 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~-~i~~~------~~~~~~~~~~ 405 (612)
++.... ...++.|..+|.+.+= +. ...|..++...++.+.+...+- .+.+- ++..++....
T Consensus 275 I~~~k~-~~~i~vG~Deg~i~v~-lg----------reeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~L 342 (794)
T KOG0276|consen 275 IAAHKG-DGKIAVGFDEGSVTVK-LG----------REEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPL 342 (794)
T ss_pred EeecCC-CCeEEEeccCCcEEEE-cc----------CCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccc
Confidence 333311 2334444444443321 11 1111122222222222111110 00000 1222222111
Q ss_pred c---eeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCc
Q 007229 406 E---HIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGN 482 (612)
Q Consensus 406 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 482 (612)
. .-...-.|..++.+|+| +++++..++..+++..... ....-+.-....|++|....++-.+++.|.++ ++.
T Consensus 343 svKeLgs~eiyPq~L~hsPNG-rfV~VcgdGEyiIyTala~--RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knf 417 (794)
T KOG0276|consen 343 SVKELGSVEIYPQTLAHSPNG-RFVVVCGDGEYIIYTALAL--RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNF 417 (794)
T ss_pred hhhhccccccchHHhccCCCC-cEEEEecCccEEEEEeeeh--hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecc
Confidence 1 12223356778888888 5566666666665542111 11123345667899998888888888889988 333
Q ss_pred ccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEE
Q 007229 483 TLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVI 562 (612)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~ 562 (612)
+. ...+... .. ...--.|.+|...+ ++.+++||.++++.+... . -....+.|+.+|.+++.++.|. .+
T Consensus 418 ke--~ksi~~~---~~-~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI-~---v~~k~v~w~d~g~lVai~~d~S-fy 485 (794)
T KOG0276|consen 418 KE--HKSIRPD---MS-AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRI-E---VTSKHVYWSDNGELVAIAGDDS-FY 485 (794)
T ss_pred ee--ccccccc---cc-eeeecCCceEEEEe-CCeEEEEEcccceEEEEE-e---eccceeEEecCCCEEEEEecCc-ee
Confidence 32 2222211 01 11222455565554 568999999999987443 2 2455789999999998887665 55
Q ss_pred EEEc
Q 007229 563 IYEI 566 (612)
Q Consensus 563 iwd~ 566 (612)
++.+
T Consensus 486 il~~ 489 (794)
T KOG0276|consen 486 ILKF 489 (794)
T ss_pred EEEe
Confidence 5544
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=280.73 Aligned_cols=291 Identities=21% Similarity=0.302 Sum_probs=247.6
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC-----CCeeeecccccccceEEEEECCCCCeEEEEEcCCc
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-----PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
....+++|++.|+.++..+.++.++++++.|.++.+|++. .|..++.+.||+..|..++.++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 4557899999999999999987799999999999999754 46778889999999999999999999999999999
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
+++||+.+++..+.| .+|...|.+++|++|.+.+++|+.|.+|++|+. -
T Consensus 87 lrlWDl~~g~~t~~f---~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt-----~----------------------- 135 (315)
T KOG0279|consen 87 LRLWDLATGESTRRF---VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT-----L----------------------- 135 (315)
T ss_pred EEEEEecCCcEEEEE---EecCCceEEEEecCCCceeecCCCcceeeeeee-----c-----------------------
Confidence 999999999998888 499999999999999999999999999999998 1
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
+...++...++. +
T Consensus 136 ----------------------------------------------g~ck~t~~~~~~-~-------------------- 148 (315)
T KOG0279|consen 136 ----------------------------------------------GVCKYTIHEDSH-R-------------------- 148 (315)
T ss_pred ----------------------------------------------ccEEEEEecCCC-c--------------------
Confidence 122222222211 1
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceE
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTV 453 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 453 (612)
.-|
T Consensus 149 -----------------------------------------------------------------------------~WV 151 (315)
T KOG0279|consen 149 -----------------------------------------------------------------------------EWV 151 (315)
T ss_pred -----------------------------------------------------------------------------CcE
Confidence 238
Q ss_pred EEEEEccC--CCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 454 TACAIAPD--GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 454 ~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
+|+.|+|+ ..+++.++.|++|++||+++.++ ...+.+|++.++.+++||||.++++|+.||.+.+||+..++.+ .
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l-y 228 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL-Y 228 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee-E
Confidence 88999997 78899999999999999998887 7888999999999999999999999999999999999999986 4
Q ss_pred cccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc----c-----ccCeeeEEEe-cCceEEEccCC
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA----H-----LGGVYGVAFM-DDFNVVSSGED 601 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----h-----~~~v~~~~~~-~~~~l~s~~~d 601 (612)
.+. |...|.+++|+|+.-.|+.+. +..|+|||+++ + .++..++. . .-...+++|+ ||..|+++-.|
T Consensus 229 sl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~-~-~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 229 SLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLES-K-AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred ecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccc-h-hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 344 889999999999987777665 44599999998 4 44443321 1 2245788999 99999999999
Q ss_pred CeEEEEEecc
Q 007229 602 ACIRVWRLAT 611 (612)
Q Consensus 602 ~~i~~w~~~~ 611 (612)
+.|++|.+..
T Consensus 305 ~~irv~qv~~ 314 (315)
T KOG0279|consen 305 NVIRVWQVAK 314 (315)
T ss_pred CcEEEEEeec
Confidence 9999999854
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=275.88 Aligned_cols=295 Identities=19% Similarity=0.295 Sum_probs=250.6
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe--eeeeeccCCccc
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK--IGEFSSEDGHHG 236 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~ 236 (612)
.+-+|++++.|.+||+|...+|.+..+++.....|+.+.+.|+++.||+++. ..|++||++++.. +..+ ++|..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~---e~h~k 84 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF---EGHTK 84 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE---eccCC
Confidence 3448999999999999999999999999988899999999999999998875 6799999998776 4455 58999
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
.|.++.|..+|+++++|++||+++|||+ +...+.+
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdl----R~~~~qR----------------------------------------- 119 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDL----RSLSCQR----------------------------------------- 119 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEec----cCcccch-----------------------------------------
Confidence 9999999999999999999999999999 4422222
Q ss_pred CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
...|..+|+++...+. ...|++|..+|.|++||+....+...+..
T Consensus 120 ------~~~~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liP---------------------------- 164 (311)
T KOG0315|consen 120 ------NYQHNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIP---------------------------- 164 (311)
T ss_pred ------hccCCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCC----------------------------
Confidence 2236678888888732 77899999999999999987654332210
Q ss_pred cCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEE
Q 007229 397 LCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHI 476 (612)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 476 (612)
+....+.++.+.|||.+++.+...|..++
T Consensus 165 ---------------------------------------------------e~~~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 165 ---------------------------------------------------EDDTSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred ---------------------------------------------------CCCcceeeEEEcCCCcEEEEecCCccEEE
Confidence 01235889999999999999999999999
Q ss_pred EEccCcc----cccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE
Q 007229 477 YSISGNT----LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 477 ~d~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 552 (612)
|++-+.. +.+...++.|++-|..+.+|||+++||+++.|.+++||+.++.-.....+.+|...+..++||.||+||
T Consensus 194 W~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 194 WRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred EEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 9986543 355677899999999999999999999999999999999999855556788999999999999999999
Q ss_pred EEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 553 ~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
++|+.|+.+++|+++. + +.+....+|..+..+++..
T Consensus 274 vTassd~~~rlW~~~~-~-k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSA-G-KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCCceeeccccc-C-ceeeecCCcccccEEEEee
Confidence 9999999999999998 6 7888889998887776653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=308.37 Aligned_cols=499 Identities=16% Similarity=0.206 Sum_probs=362.3
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
+...+|-.++|+|...+|+++- .|.|.+||..-+.++..|.+|.++|..++|+|++.+++||++|-.|+||++.+.++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc- 85 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC- 85 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-
Confidence 3456888999999999999998 89999999999999999999999999999999999999999999999999999984
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
..++.+|-.-|..+.|++.-.+++++++|. +|+||+|++++++..+.||...|.|..|+|... +++++|-|.+||+
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQ---TIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQ---TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRV 161 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCC---eEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEE
Confidence 458999999999999999999999999998 789999999999999999999999999999888 7999999999999
Q ss_pred EeCCCCe-----------------------------eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 175 YEGPPFK-----------------------------FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 175 wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
||+...+ ..+.+.||...|+.++|+|.-.++++|+.|+.|++|.+..-+..
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 9964211 12346789999999999999999999999999999998765443
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEc
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSL 304 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 304 (612)
. ...-.+|...|.++-|+|..+++++.++|++|++||+ .....+++|+..+ ...+.++.. .-.+++++.
T Consensus 242 E-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm----~kRt~v~tfrren-----dRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 242 E-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM----TKRTSVQTFRREN-----DRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred e-ehhhhcccCCcceEEecCccceeEecCCCccEEEEec----ccccceeeeeccC-----CeEEEEEecCCcceeeeec
Confidence 2 2223599999999999999999999999999999999 8889999987654 445555544 456777777
Q ss_pred CCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-----cccceEEEEee
Q 007229 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-----YDARIKCLAAV 379 (612)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i~~~~~~ 379 (612)
|+-+.+|.+.... +..+ .+ ++.+.-.- |..|+.+|+.+.+....... ...++.++.++
T Consensus 312 DsGm~VFkleREr-----------pa~~--v~---~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYN 374 (1202)
T KOG0292|consen 312 DSGMIVFKLERER-----------PAYA--VN---GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYN 374 (1202)
T ss_pred CCceEEEEEcccC-----------ceEE--Ec---CCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeec
Confidence 7777777755321 2222 22 33333333 88999999988554443221 33567778872
Q ss_pred ---ccEEEEecC-CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe-eccEEEee-cccceeeecccceE
Q 007229 380 ---EEVIFTAGF-DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST-ESGVILLD-SLKVMSKIDLGFTV 453 (612)
Q Consensus 380 ---~~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~i 453 (612)
+-.+++... .+...++.+................+..-++--...++++... ...+.+-+ ..+..+.+......
T Consensus 375 pae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~ 454 (1202)
T KOG0292|consen 375 PAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPEST 454 (1202)
T ss_pred cccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccc
Confidence 333444433 3455566655543221111111111111121112223333333 22233222 33334444444455
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
..+-+.-.|.+|+. ....|.+||++.... ...++ -..+.-+.||+|..++|.-+. .+|.|.+.+-.-. ..+
T Consensus 455 ~~IF~ag~g~lll~--~~~~v~lfdvQq~~~--~~si~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~l~--~si 525 (1202)
T KOG0292|consen 455 DDIFYAGTGNLLLR--SPDSVTLFDVQQKKK--VGSIK--VSKVKYVVWSNDMSRVALLSK-HTITIADKKLELL--CSI 525 (1202)
T ss_pred cceeeccCccEEEE--cCCeEEEEEeecceE--EEEEe--cCceeEEEEcCccchhhhccc-ceEEEEecchhhe--ecc
Confidence 55666666766654 334799999987765 33333 357899999999999888776 5888888543322 111
Q ss_pred cccccceeEEEecCCCcEEEEee
Q 007229 534 LFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
...-+|.+-+|..+|-+|.+..
T Consensus 526 -hEtiriksgawde~gVfiYtT~ 547 (1202)
T KOG0292|consen 526 -HETIRIKSGAWDEDGVFIYTTL 547 (1202)
T ss_pred -hheeEeeeceeccCceEEEEeh
Confidence 1345678888988877666554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=277.80 Aligned_cols=285 Identities=17% Similarity=0.273 Sum_probs=255.3
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCC--
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNG-- 91 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~-- 91 (612)
.+|.++|.++.|++|.++|++++ ||.+.|||.-+....+.+.-....|..++|+|.|+++|.|+-|+...||++.+.
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 46788999999999999999999 999999999988888888888999999999999999999999999999999865
Q ss_pred c---eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC-CCCEEEEEee
Q 007229 92 F---VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFRIATCG 167 (612)
Q Consensus 92 ~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~ 167 (612)
+ ...+++.+|.+.+.++.|.+|+ .|++++.|. ..-+|+.++++.+..|.+|.+.|.+++++| +++ .+++|+
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~---TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~ 206 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDM---TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGG 206 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCC-ceEecCCCc---eEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecc
Confidence 2 2667899999999999999966 566666665 457888889999999999999999999999 666 799999
Q ss_pred cCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 168 EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
-|+..++||++.+.+.+++.+|+..|+++.|.|+|.-+++|+.|++.++||++..+.+..+... ....+|++++|+..|
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAFSKSG 285 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEEcccc
Confidence 9999999999999999999999999999999999999999999999999999999999988533 556789999999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
++|+.|..|.++.+||. -.++.+ ..+.+|.
T Consensus 286 RlLfagy~d~~c~vWDt----lk~e~v----------------------------------------------g~L~GHe 315 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDT----LKGERV----------------------------------------------GVLAGHE 315 (343)
T ss_pred cEEEeeecCCceeEeec----cccceE----------------------------------------------EEeeccC
Confidence 99999999999999998 333332 4566899
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
+.|.++..++ ++..+++|+.|..+++|.
T Consensus 316 NRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 316 NRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CeeEEEEECC-CCcEEEecchhHheeecC
Confidence 9999999983 288999999999999993
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=302.68 Aligned_cols=556 Identities=14% Similarity=0.119 Sum_probs=414.1
Q ss_pred EEEccCC-CEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 24 ISGNPKT-DTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 24 ~~~s~d~-~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
..+..-| .++++++ |+...+||.++-..+..-..+...|+|++-..+--|.|++ ..|.+|. .++.+......|
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g---~~i~~~~--rgk~i~~~~~~~ 113 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASG---NKIYAYA--RGKHIRHTTLLH 113 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecC---cEEEEEE--ccceEEEEeccc
Confidence 3444333 3344444 9999999999988887666899999999977765444444 3566664 444466777788
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ce----eeeeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEE
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TT----VGDFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFY 175 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~----~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~w 175 (612)
...|.-+. |-|.+++++..++. +.+|..... ++ +..++...+.|+++. +|.- =..++.|+.+|.+.+|
T Consensus 114 ~a~v~~l~--~fGe~lia~d~~~~---l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~ 187 (910)
T KOG1539|consen 114 GAKVHLLL--PFGEHLIAVDISNI---LFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLW 187 (910)
T ss_pred cceEEEEe--eecceEEEEEccCc---EEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEE
Confidence 87776654 45778888887772 344444342 11 112222333366654 4432 1258999999999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc-cccEEEEEEecCCCEE-EEE
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH-HGSIYAVSWSPDGKKV-LTV 253 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l-~~~ 253 (612)
++++++.+++++++...|+++.=+|-=..++.|..+|+|.+++++.++.+..+ .| .++|++++|..||+.+ +++
T Consensus 188 Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF----k~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 188 NVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF----KQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE----EccccceeEEEeccCCCeeEEec
Confidence 99999999999999999999999998889999999999999999999999999 55 4999999999999865 555
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC---CCceeecCcccce
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD---KAPLSFSGHVKNV 330 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~v 330 (612)
+..|.+.+||+ +..+........+...+. ...+......+++.+.|+.+++|-...+. ..++...||..+.
T Consensus 264 ~~~G~m~~wDL----e~kkl~~v~~nah~~sv~--~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 264 RSNGDMAFWDL----EKKKLINVTRNAHYGSVT--GATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred cCCceEEEEEc----CCCeeeeeeeccccCCcc--cceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 56699999999 777776666543311111 11222336678888889988887655332 3455667899999
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece------------------ecccceEEEEee-------ccEEEE
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK------------------KYDARIKCLAAV-------EEVIFT 385 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------------------~~~~~i~~~~~~-------~~~l~~ 385 (612)
.++.|....+..+.+++.|++++.+++......+... ..-.+|..+++. .+.+..
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 9999996568999999999999998765332211111 023456666662 334455
Q ss_pred ecCCCeEEEEecCCCCCCccceec------cCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeee----cccceE
Q 007229 386 AGFDNKVWRVPLCEGECGDAEHID------VGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKI----DLGFTV 453 (612)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~i 453 (612)
.-.+...+.|+..+.... ..... ......+++.++.|...++..+.+.+.+++ .+-....+ .|+.+|
T Consensus 418 h~~~~~~~tW~~~n~~~G-~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V 496 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSG-RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEV 496 (910)
T ss_pred ecCcceEEEEeccCcccc-cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCce
Confidence 556668999999887653 22222 345677888999997666666677787887 33333444 488999
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
+.++...-++.+++++.+|.+.+||..+..+ ...+. -...++++..+.....+|.+..|-.|+++|..+.+.. ..+
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l--~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-R~f 572 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVL--KKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-REF 572 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcce--eeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-HHh
Confidence 9999999999999999999999999998775 33333 2357888999998899999999999999999999887 668
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCC-CeEEEEE
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGED-ACIRVWR 608 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d-~~i~~w~ 608 (612)
.+|...|++++|||||++|++++.|++|++||+.+ + .++-.+. -..+.+++.|+ .+.+|+++..| .-|++|.
T Consensus 573 ~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt-~-~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 573 WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT-G-TLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred hccccceeeeEeCCCCcEEEEeecCCcEEEEeccC-c-ceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 88999999999999999999999999999999999 5 4555443 56789999999 99999999988 6799995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=307.88 Aligned_cols=488 Identities=15% Similarity=0.174 Sum_probs=380.1
Q ss_pred CCEEEEec-CCEEEEEeCCCC-----ceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 30 TDTILYCN-GRSVLIRYLDKP-----LHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 30 ~~~l~~~~-~~~i~i~~~~~~-----~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
|.+++.+. ++.+.||+...+ .....++...+.|+++. +|. =+.++.|+.+|.+.||++.+++ +..++.++
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K-~v~~f~~~ 201 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK-VVYTFQEF 201 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCc-EEEEeccc
Confidence 44555554 678888887763 11122222222366654 453 3568889999999999999999 66789999
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
...|+++.-+|-=..++.|..++ .|.+++...++.+.+|+...++|+.++|..||+.++++|+..|.+.+||++..+
T Consensus 202 ~s~IT~ieqsPaLDVVaiG~~~G---~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 202 FSRITAIEQSPALDVVAIGLENG---TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred ccceeEeccCCcceEEEEeccCc---eEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 99999999999888999988888 578888889999999997679999999999999999999999999999999999
Q ss_pred eeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee-eeeeccCCccccEEEEEEe-cCCCEEEEEeCCCc
Q 007229 182 FKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI-GEFSSEDGHHGSIYAVSWS-PDGKKVLTVSADKS 258 (612)
Q Consensus 182 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~ 258 (612)
.+..++ .|.+.|....|.|....+++++.|+.+++|=.+++.-. +.+....+|..|..++.|. .+|.++.+++.|++
T Consensus 279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 888766 78899999999999999999999999998865544332 2223346999999999998 68999999999999
Q ss_pred EEEEEeecCCCCCeeEeeee--------cc-Cccccceeeeeeecc-------CCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 259 AKVWEILEDGSGGRVIKTFA--------SS-TSNAVEDMLVGCLWQ-------NDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
++.+++.....+.+..+... .. ........+..+.+. .+.+.+--.+...+.|+......-...
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 99998743222222222110 00 001111233333333 445555556678899997765442333
Q ss_pred ecC-----cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece---ecccceEEEEee--ccEEEEecCCCeE
Q 007229 323 FSG-----HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK---KYDARIKCLAAV--EEVIFTAGFDNKV 392 (612)
Q Consensus 323 ~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~~~--~~~l~~~~~~~~i 392 (612)
+.. ....+++++.+ ..+++.+.|+..|.|-+|+++++....... .|..+|..++.+ +..+++++.+|.+
T Consensus 439 L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred ecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 221 23455555555 338999999999999999999998888773 599999999994 5679999999999
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG 472 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 472 (612)
.+|+..+... ...+.....++++..+.....++++..|-
T Consensus 518 kfw~f~~k~l-----------------------------------------~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 518 KFWDFKKKVL-----------------------------------------KKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred EEEecCCcce-----------------------------------------eeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 9999987653 23344556788888998889999999999
Q ss_pred eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 552 (612)
.|+++|..+.+. .+.+.+|.+.|++++|||||++|++++.|++|++||+.++.++-... -..+++++.|||+|.+|
T Consensus 557 ~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~--vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 557 SIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDFL 632 (910)
T ss_pred eEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--cCCcceeeEECCCCCEE
Confidence 999999999888 78899999999999999999999999999999999999999874332 46789999999999999
Q ss_pred EEeecC-cEEEEEEccC
Q 007229 553 ATGSID-TCVIIYEIGK 568 (612)
Q Consensus 553 ~s~~~d-~~i~iwd~~~ 568 (612)
|++..| .-|++|.-..
T Consensus 633 AT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 633 ATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEEEecCceEEEEEchh
Confidence 999988 5699997654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=284.43 Aligned_cols=343 Identities=17% Similarity=0.250 Sum_probs=292.4
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
.+..|..|+..|.+++.+|+.+++|||+.|..-.||++.+++ ....+.+|+..|+++.||.||.+||+++-++ .+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG---~v~ 131 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSG---KVL 131 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCc---cEE
Confidence 355688999999999999999999999999999999999999 6678999999999999999999999999888 578
Q ss_pred EEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 131 AFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
||..+++.....+...-..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+.||+.++++=.|.|+|+.++++..
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 888889999888887788899999999988 7999999999999999998888899999999999999999999999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
||+|++||+.+++++..+... ...+..++.++.++..++.|..++.+++-+. .+++.+.......
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~--e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~----~sgKVv~~~n~~~--------- 275 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQA--EGLELPCISLNLAGSTLTKGNSEGVACGVNN----GSGKVVNCNNGTV--------- 275 (399)
T ss_pred CceEEEEecCCCceeEEeccc--ccCcCCccccccccceeEeccCCccEEEEcc----ccceEEEecCCCC---------
Confidence 999999999999999988432 3456778899999999999999999888876 5554443322100
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
......+..
T Consensus 276 -----------------------------~~l~~~~e~------------------------------------------ 284 (399)
T KOG0296|consen 276 -----------------------------PELKPSQEE------------------------------------------ 284 (399)
T ss_pred -----------------------------ccccccchh------------------------------------------
Confidence 000000000
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
..
T Consensus 285 ------------------------------------------------------------------------------~~ 286 (399)
T KOG0296|consen 285 ------------------------------------------------------------------------------LD 286 (399)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 01
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 530 (612)
..|.++.++..-.+.|+|+-||+|.|||+...++ +..-.|..+|+.+.|-+ ..+|++++.||.|+.||.++++++
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~---R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~- 361 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL---RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK- 361 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchh---heeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE-
Confidence 1244455666677899999999999999998876 44556888999999998 789999999999999999999998
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
..+.+|..+|.+++++|+.++++++|.|++.+||+++
T Consensus 362 ~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 362 FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 5688999999999999999999999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=296.47 Aligned_cols=462 Identities=19% Similarity=0.274 Sum_probs=344.2
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
+.+..|+.+|.++.|+|...+++++-.+|.|.|||.++.. +.+.+....-+|++..|-+-.++++++++|. .|+|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-mVksfeV~~~PvRa~kfiaRknWiv~GsDD~---~IrVf 82 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-MVKSFEVSEVPVRAAKFIARKNWIVTGSDDM---QIRVF 82 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-eeeeeeecccchhhheeeeccceEEEecCCc---eEEEE
Confidence 3456699999999999999999999999999999999988 6778888999999999999999999999998 78999
Q ss_pred EecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECC-CCCeEEEEEc
Q 007229 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSP-DGSKLISVSS 210 (612)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 210 (612)
++++++++..|..|.+.|++++.+|..++ +++++.|-+|++||.+. ..+.+++.||+.-|.+++|.| |.+.+++++-
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999999996 99999999999999875 467778999999999999999 5678999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC--CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG--KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
|++|+||.+.+..+..++ ++|...|.++.|-+.| .+|++|+.|.++++||. ++..++
T Consensus 162 DrTVKVWslgs~~~nfTl---~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy----Qtk~CV-------------- 220 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTL---EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY----QTKSCV-------------- 220 (794)
T ss_pred cccEEEEEcCCCCCceee---eccccCcceEEeccCCCcceEEecCCCceEEEeec----chHHHH--------------
Confidence 999999999999999888 4999999999999844 69999999999999998 555554
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
+++.||...|..+.|++. -.++++|++||++++|+..+-+.......
T Consensus 221 --------------------------------~TLeGHt~Nvs~v~fhp~-lpiiisgsEDGTvriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 221 --------------------------------QTLEGHTNNVSFVFFHPE-LPIIISGSEDGTVRIWNSKTYKLEKTLNY 267 (794)
T ss_pred --------------------------------HHhhcccccceEEEecCC-CcEEEEecCCccEEEecCcceehhhhhhc
Confidence 556788999999988842 67999999999999999999888888777
Q ss_pred cccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee-------
Q 007229 369 YDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD------- 439 (612)
Q Consensus 369 ~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 439 (612)
.-.+++|++. .++.++.|..+|.+. ..+....+ .++..+.+ .++....+.+.-.+
T Consensus 268 gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP-------------~vsMd~~g--KIiwa~~~ei~~~~~ks~~~~ 331 (794)
T KOG0276|consen 268 GLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP-------------AVSMDSNG--KIIWAVHSEIQAVNLKSVGAQ 331 (794)
T ss_pred CCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC-------------ceeecCCc--cEEEEcCceeeeeeceeccCc
Confidence 8899999997 455566666555443 33333222 12222222 22222222221111
Q ss_pred ----cccceee--ec---ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEE
Q 007229 440 ----SLKVMSK--ID---LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA 510 (612)
Q Consensus 440 ----~~~~~~~--~~---~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (612)
+++++.. -+ ..-....++-||+|++++++ .||.-.||..-.-+ ..+-+.-....|++|....|
T Consensus 332 ~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~R-------nK~fG~~~eFvw~~dsne~a 403 (794)
T KOG0276|consen 332 KEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALALR-------NKAFGSGLEFVWAADSNEFA 403 (794)
T ss_pred ccccCCccccchhhhccccccchHHhccCCCCcEEEEe-cCccEEEEEeeehh-------hcccccceeEEEcCCCCeEE
Confidence 1111110 00 11223467889999877765 57888888632211 12335567789999988888
Q ss_pred EEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 511 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
.-..++.|+++ ++.+.. +.+..... +..--.|.+|...+. +.+++||.++ + ..+..+.-. ...+.|+
T Consensus 404 vRes~~~vki~--knfke~-ksi~~~~~----~e~i~gg~Llg~~ss-~~~~fydW~~-~-~lVrrI~v~---~k~v~w~ 470 (794)
T KOG0276|consen 404 VRESNGNVKIF--KNFKEH-KSIRPDMS----AEGIFGGPLLGVRSS-DFLCFYDWES-G-ELVRRIEVT---SKHVYWS 470 (794)
T ss_pred EEecCCceEEE--ecceec-cccccccc----eeeecCCceEEEEeC-CeEEEEEccc-c-eEEEEEeec---cceeEEe
Confidence 88888999998 454443 22221111 222224556666654 5599999998 5 666665533 4567899
Q ss_pred cCceEEEccCCCeEEEEEec
Q 007229 591 DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 591 ~~~~l~s~~~d~~i~~w~~~ 610 (612)
|++.|+..+.|....+..++
T Consensus 471 d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 471 DNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred cCCCEEEEEecCceeEEEec
Confidence 55444444444455555543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=268.26 Aligned_cols=298 Identities=19% Similarity=0.320 Sum_probs=252.3
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCc
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSR 148 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~ 148 (612)
.-+||+++.|.+||+|...+|.+ ..++....+.|+.+...||++.||+++... |++++.++++ ++.++.+|..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C-~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh----vRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC-SRTIQHPDSQVNRLEITPDKKDLAAAGNQH----VRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE-EEEEecCccceeeEEEcCCcchhhhccCCe----eEEEEccCCCCCceeEEeccCC
Confidence 35899999999999999999985 447777788999999999999999999886 7899988544 7999999999
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.|+++.|..+|++ +++|++||+++|||++...+.+.++ |..+|+++..+|+...|+++..+|.|++||+.+..+...+
T Consensus 85 NVtaVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 85 NVTAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred ceEEEEEeecCeE-EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 9999999999996 9999999999999999977666664 7799999999999999999999999999999988777666
Q ss_pred eccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 229 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
. .....+|.++...|||++++.+...|...+|++ ........+.
T Consensus 163 i--Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l----~~~~~~s~l~------------------------------ 206 (311)
T KOG0315|consen 163 I--PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL----LNHQTASELE------------------------------ 206 (311)
T ss_pred C--CCCCcceeeEEEcCCCcEEEEecCCccEEEEEc----cCCCccccce------------------------------
Confidence 3 244578999999999999999999999999998 3211111000
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecC
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGF 388 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~ 388 (612)
++..++.
T Consensus 207 ----------P~~k~~a--------------------------------------------------------------- 213 (311)
T KOG0315|consen 207 ----------PVHKFQA--------------------------------------------------------------- 213 (311)
T ss_pred ----------Ehhheec---------------------------------------------------------------
Confidence 0011111
Q ss_pred CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEE
Q 007229 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVG 468 (612)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 468 (612)
|...+..+.+|||+++||++
T Consensus 214 ------------------------------------------------------------h~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 214 ------------------------------------------------------------HNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ------------------------------------------------------------ccceEEEEEECCCCcEEEee
Confidence 23357788899999999999
Q ss_pred ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEec
Q 007229 469 GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546 (612)
Q Consensus 469 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 546 (612)
+.|.+++||+.++. +.....+++|...+...+||.||+||++|+.|+.+++|++..++.+ ....+|..+..|++..
T Consensus 234 ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v-~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV-RQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee-eecCCcccccEEEEee
Confidence 99999999999987 4557889999999999999999999999999999999999999987 5677888887777754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=291.62 Aligned_cols=325 Identities=23% Similarity=0.345 Sum_probs=274.0
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC--e--eeeccc----------ccccceEEEEECCCCCeEEEEE
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF--K--FKLSHR----------EHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~--~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
..|..+|.+.+|+|-...++++++.|-+.++|++... . .+..++ ..+..|++++|+.+|..||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 3499999999999987767999999999999998741 1 111111 1235799999999999999999
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
.||.+++|+ ..|..+..+ ..|.+||.++.|+..|.||++++.|+++.+||. .++...+.+..
T Consensus 255 ~~G~~riw~-~~G~l~~tl---~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~----~~g~~~q~f~~---------- 316 (524)
T KOG0273|consen 255 EDGEARIWN-KDGNLISTL---GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA----HTGTVKQQFEF---------- 316 (524)
T ss_pred cCcEEEEEe-cCchhhhhh---hccCCceEEEEEcCCCCEEEeccCCccEEEEec----cCceEEEeeee----------
Confidence 999999999 467777777 489999999999999999999999999999999 77777766654
Q ss_pred eeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceec
Q 007229 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKY 369 (612)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 369 (612)
|..+-..+.|.+ ...+++.+.|+.|+++.+....+......
T Consensus 317 ------------------------------------~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~G- 357 (524)
T KOG0273|consen 317 ------------------------------------HSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIG- 357 (524)
T ss_pred ------------------------------------ccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeec-
Confidence 333445566766 78899999999999997766554443332
Q ss_pred ccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecc
Q 007229 370 DARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDL 449 (612)
Q Consensus 370 ~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (612)
|
T Consensus 358 -------------------------------------------------------------------------------H 358 (524)
T KOG0273|consen 358 -------------------------------------------------------------------------------H 358 (524)
T ss_pred -------------------------------------------------------------------------------c
Confidence 4
Q ss_pred cceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCC---------cEEEEEcCCCeEEE
Q 007229 450 GFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDV---------SMFASADGNREAIV 520 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~d~~i~i 520 (612)
..+|.++.|.|.+.+|++++.|++++||+...... ...+.+|+..|..+.|+|+| ..+++++.|++|++
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred cCceEEEEECCCCceEEEecCCCeeEeeecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 45688899999999999999999999999877665 68899999999999999965 47999999999999
Q ss_pred EecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEcc
Q 007229 521 WDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSG 599 (612)
Q Consensus 521 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~ 599 (612)
||+..+.++. .+..|..+|.+++|||+|++||+|+.||.|.+|+.++ + +.++.+.+ .+.|..++|+ ++.+|..+-
T Consensus 437 wdv~~gv~i~-~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~-~-~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 437 WDVESGVPIH-TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT-G-KLVKSYQG-TGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred EEccCCceeE-eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc-h-heeEeecC-CCeEEEEEEcCCCCEEEEEe
Confidence 9999999984 5666999999999999999999999999999999999 6 67776664 4569999999 999999999
Q ss_pred CCCeEEEEEec
Q 007229 600 EDACIRVWRLA 610 (612)
Q Consensus 600 ~d~~i~~w~~~ 610 (612)
.|+.+++-|+.
T Consensus 513 sd~~vcvldlr 523 (524)
T KOG0273|consen 513 SDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEec
Confidence 99999998874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=276.78 Aligned_cols=335 Identities=19% Similarity=0.260 Sum_probs=278.7
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
...+..|..|...|.+++.+|+.+ +++||+.|..-.+|++.++.....+.+|...|+++.|+.||.+||+|..+|.|+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 345678999999999999999777 7999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+..++.....+. ..-..+.-+.|+|.+..|+.|+.||.+.+|.+ .++..
T Consensus 133 ~~~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~i----p~~~~----------------------- 182 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI----PSQAL----------------------- 182 (399)
T ss_pred EEcccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEEC----CCcce-----------------------
Confidence 9999999988883 45678899999999999999999999999999 33322
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
.+.+.+|..++++-.|.+. ++.++++..||+|++|+..++++.....+..
T Consensus 183 -----------------------~kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e------ 232 (399)
T KOG0296|consen 183 -----------------------CKVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQAE------ 232 (399)
T ss_pred -----------------------eeEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEecccc------
Confidence 2456788899999989843 9999999999999999999886554332100
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
.....++
T Consensus 233 -------------------------------------------------------------------------~~~~~~~ 239 (399)
T KOG0296|consen 233 -------------------------------------------------------------------------GLELPCI 239 (399)
T ss_pred -------------------------------------------------------------------------cCcCCcc
Confidence 1134567
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccce------eeccccCceEEEE---EcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM------VLEKHRGAITVIQ---YSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~------~~~~~~~~i~~~~---~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
.++..+..++.|..++.+++.+..+++..... ....+...+.++. ++..-++.|+|+-||+|.|||+...+
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 77777777777777777777777666652111 1123444444544 45566789999999999999999988
Q ss_pred eeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEE
Q 007229 528 VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRV 606 (612)
Q Consensus 528 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~ 606 (612)
.+ ... .|..+|+.+.|-+ ..+|++++.||.|+.||.++ + +++..+.+|..+|..++.+ +.++++|+|.|++.++
T Consensus 320 ~R-~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 320 LR-HIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDART-G-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred hh-eec-cCCCceEEEEEcC-cchheeeccCceEEeeeccc-c-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 75 334 4899999999998 77999999999999999999 7 8999999999999999999 9999999999999999
Q ss_pred EEec
Q 007229 607 WRLA 610 (612)
Q Consensus 607 w~~~ 610 (612)
+++.
T Consensus 395 F~v~ 398 (399)
T KOG0296|consen 395 FEVP 398 (399)
T ss_pred EecC
Confidence 9875
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=285.60 Aligned_cols=577 Identities=16% Similarity=0.254 Sum_probs=382.1
Q ss_pred CCCCCceeEEEEccCCC---EEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 15 STERGRGILISGNPKTD---TILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~---~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.+|..+|+|+.+-|+.+ ++++|+ |+.|.+|.++... .+..+.+|.. .++++...-........|+.+.+||.
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~--~~~cv~a~~~~~~~~~ad~~v~vw~~ 128 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK--ECVCVVARSSVMTCKAADGTVSVWDK 128 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce--eEEEEEeeeeEEEeeccCceEEEeec
Confidence 46889999999999998 777777 8999999998433 3444666554 45555544444444478999999999
Q ss_pred CCCce-eeeeeeecCC--CeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCC----ceeeeeccCCceEEEEEEcCCC-
Q 007229 89 HNGFV-LKNEFKVLSG--RIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSG----TTVGDFDGHSRRVLSCEFKPTR- 159 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~--~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~- 159 (612)
+..+. +...+....+ -..|+++.| .+.+|.+++.... .+...... +.+..+.||.+.|.+++|...+
T Consensus 129 ~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~----~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 129 QQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF----VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred CCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce----EEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 65551 2222222222 235667777 5566666665542 24444333 6788899999999999998755
Q ss_pred -CEEEEEeecCCeEEEEeCCCCe-------------------------ee------ecccccccceEEEEECCCCCeEEE
Q 007229 160 -PFRIATCGEDFLVNFYEGPPFK-------------------------FK------LSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 160 -~~~l~~~~~d~~i~~wd~~~~~-------------------------~~------~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
.++|++++.|..||+|.+..+. .. ..+.||++.|+++.|+|.+..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 4689999999999999743221 11 124589999999999999999999
Q ss_pred EEcCCcEEEEecCCCC--eeee--eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcc
Q 007229 208 VSSDRKGLIYDGKSGE--KIGE--FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~--~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 283 (612)
++.|.++.+|...+.. .+.. +....+.........|+|+++.+++-+..|..++|.. .....-... ....
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt----~d~~~w~~~--~~iS 358 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT----KDKTFWTQE--PVIS 358 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec----cCccceeec--cccc
Confidence 9999999999876542 2222 2112244566889999999999999999999999984 222111111 1111
Q ss_pred ccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCC---CceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 284 AVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDK---APLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 284 ~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
.....+..+.|. ++++++.+.|.+-++|-.-..+. .+...+-|...++++++.+. ...+++|..+..+|+|+..
T Consensus 359 GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCc
Confidence 233456677777 88999999999999987552222 22334458888999999853 6788999999999999764
Q ss_pred Cceeeee------------ceecccceEEEEeeccEEE-----EecC----------------------CC--eEEEEec
Q 007229 359 VGYSSKL------------EKKYDARIKCLAAVEEVIF-----TAGF----------------------DN--KVWRVPL 397 (612)
Q Consensus 359 ~~~~~~~------------~~~~~~~i~~~~~~~~~l~-----~~~~----------------------~~--~i~~~~~ 397 (612)
......+ .......|..+...++-++ ++.. |. ...+|+-
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 2111000 0001111111111111000 0000 00 1112221
Q ss_pred CCCCCCccceeccCCCcceeeecCCCCcEEEEEeec-----cEEEeecccc--eeeec-ccceEEEEEEccCCCeEEEEe
Q 007229 398 CEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES-----GVILLDSLKV--MSKID-LGFTVTACAIAPDGSEAIVGG 469 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~-~~~~i~~~~~s~~~~~l~~~~ 469 (612)
...-.. .- ..+.+++.+|++.-++...... .+.+|++..- .+.+. |.-.|+.++||||+++|++.+
T Consensus 518 v~KLYG--HG----yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 518 VHKLYG--HG----YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred hHHhcc--Cc----eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee
Confidence 111100 00 0234555666654443333322 3666664332 23333 888999999999999999999
Q ss_pred cCCeEEEEEccCcccc--cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc--ceeee-cccccccceeEEE
Q 007229 470 QNGKLHIYSISGNTLT--EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK--EVKLN-NMLFHTARINCLA 544 (612)
Q Consensus 470 ~dg~v~i~d~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~-~~~~~~~~i~~~~ 544 (612)
.|.++.+|........ .....+.|+.-|.+..|+|++.++||++.|.+|++|..... +.+.. ....+..+|++++
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 9999999998544321 12336789999999999999999999999999999998877 44323 3344889999999
Q ss_pred ecC-----CCcEEEEeecCcEEEEEEccCCC----------cceeeeecccccCeeeEEEecC-----------ceEEEc
Q 007229 545 WSP-----SSTMVATGSIDTCVIIYEIGKPA----------SSRITIKNAHLGGVYGVAFMDD-----------FNVVSS 598 (612)
Q Consensus 545 ~s~-----~~~~l~s~~~d~~i~iwd~~~~~----------~~~~~~~~~h~~~v~~~~~~~~-----------~~l~s~ 598 (612)
|.| .+..++.|-+.|.|.+|...... ...+....+|.+.|+.+.|.+- ..|++|
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~ 751 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVG 751 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeee
Confidence 987 22367889999999999976211 0112234567889999999821 137999
Q ss_pred cCCCeEEEEEec
Q 007229 599 GEDACIRVWRLA 610 (612)
Q Consensus 599 ~~d~~i~~w~~~ 610 (612)
++|.++|+++++
T Consensus 752 g~D~~vri~nv~ 763 (764)
T KOG1063|consen 752 GDDESVRIFNVD 763 (764)
T ss_pred cccceeEEeecc
Confidence 999999999975
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=259.66 Aligned_cols=286 Identities=19% Similarity=0.321 Sum_probs=238.5
Q ss_pred CCCCCceeEEEEccC-CCEEEEec-CCEEEEEeCCCC---ceeeEe-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 15 STERGRGILISGNPK-TDTILYCN-GRSVLIRYLDKP---LHVEFY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d-~~~l~~~~-~~~i~i~~~~~~---~~~~~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
+.|++++-.++|+|- |..||+++ ++.|+||+...+ .+...+ .+|+..|..++|+|.|++||+||.|.++.||.-
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 456789999999998 88999998 799999999853 333333 479999999999999999999999999999998
Q ss_pred CCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-----CceeeeeccCCceEEEEEEcCCCCEE
Q 007229 89 HNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-----GTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
..++. ....+.+|...|.+++|+++|.+||+++.+. .+|.|+. -++...++.|+..|..+.|+|... +
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK-----SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-l 164 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK-----SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-L 164 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC-----eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-e
Confidence 86654 5678999999999999999999999999998 5777772 357788999999999999999887 7
Q ss_pred EEEeecCCeEEEEeCC---CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 163 IATCGEDFLVNFYEGP---PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
|++++.|.+|++|+-. ...+..++.+|+..|.+++|+|.|..|++++.|++++||...+ .+ ...|..+++
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~--~~~~sr~~Y 237 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DL--SGMHSRALY 237 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Cc--chhcccceE
Confidence 9999999999999755 5678889999999999999999999999999999999998652 22 236788999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
.+.|. ...|++++.|+.|++|.. .....-..+. ..
T Consensus 238 ~v~W~--~~~IaS~ggD~~i~lf~~----s~~~d~p~~~---------------------------------------l~ 272 (312)
T KOG0645|consen 238 DVPWD--NGVIASGGGDDAIRLFKE----SDSPDEPSWN---------------------------------------LL 272 (312)
T ss_pred eeeec--ccceEeccCCCEEEEEEe----cCCCCCchHH---------------------------------------HH
Confidence 99998 446999999999999986 2110000000 11
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
...-..|...|+++.|.+...++|++++.||.+++|.+.
T Consensus 273 ~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 273 AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 123346888999999997668999999999999999764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=281.82 Aligned_cols=334 Identities=17% Similarity=0.317 Sum_probs=281.2
Q ss_pred eccCCCceEEEEECCCCC-EEEEeeCcCeEEEeecCCCc--e-----eeeee------eecCCCeEEEEECCCCCEEEEE
Q 007229 55 YGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGTHNGF--V-----LKNEF------KVLSGRIDDLQWSPDGLRIVAC 120 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~--~-----~~~~~------~~~~~~i~~~~~s~~~~~l~~~ 120 (612)
+..|+.+|.+.+|+|-.. +||+++.|-..++|++.... . ++..+ ......|++++|+.+|..||++
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 334999999999999665 99999999999999998511 0 11111 1123579999999999999999
Q ss_pred eCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEEC
Q 007229 121 GDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFS 199 (612)
Q Consensus 121 ~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 199 (612)
..++ .+..|+ .|..+.++..|.++|.++.|+.+|.| +++++.|+++.+||..++...+.+.-|+.+-..+.|-
T Consensus 254 ~~~G-----~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 254 SEDG-----EARIWNKDGNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred ecCc-----EEEEEecCchhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 9998 466666 68889999999999999999999996 9999999999999999999999999999987888997
Q ss_pred CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
.+. .+++.+.|+.|+|+.+....+..++. +|.++|.++.|.|.+.+|++++.|+++++|+. .....
T Consensus 328 ~~~-~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~----~~~~~------ 393 (524)
T KOG0273|consen 328 SND-EFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNPTGSLLASCSDDGTLKIWSM----GQSNS------ 393 (524)
T ss_pred cCc-eEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECCCCceEEEecCCCeeEeeec----CCCcc------
Confidence 665 58888999999999999999999883 89999999999999999999999999999997 33322
Q ss_pred cCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 280 STSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
...+.+|...|..+.|++.++
T Consensus 394 ----------------------------------------~~~l~~Hskei~t~~wsp~g~------------------- 414 (524)
T KOG0273|consen 394 ----------------------------------------VHDLQAHSKEIYTIKWSPTGP------------------- 414 (524)
T ss_pred ----------------------------------------hhhhhhhccceeeEeecCCCC-------------------
Confidence 244566777777777774110
Q ss_pred ceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee
Q 007229 360 GYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD 439 (612)
Q Consensus 360 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (612)
T Consensus 415 -------------------------------------------------------------------------------- 414 (524)
T KOG0273|consen 415 -------------------------------------------------------------------------------- 414 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeE
Q 007229 440 SLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREA 518 (612)
Q Consensus 440 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 518 (612)
+..+| ++..+++++.|++|++||+..+.+ ...+..|..+|.+++|+|+|+++|+|+.||.|
T Consensus 415 ----------------v~~n~~~~~~l~sas~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V 476 (524)
T KOG0273|consen 415 ----------------VTSNPNMNLMLASASFDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCV 476 (524)
T ss_pred ----------------ccCCCcCCceEEEeecCCeEEEEEccCCce--eEeeccCCCceEEEEecCCCcEEEecCCCCee
Confidence 11122 355788899999999999999877 78899999999999999999999999999999
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
.+|+.++++.. +... ..+.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 477 ~iws~~~~~l~-~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 477 HIWSTKTGKLV-KSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred Eeccccchhee-Eeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999987 4444 45679999999999999999999999999875
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=275.36 Aligned_cols=283 Identities=22% Similarity=0.351 Sum_probs=259.6
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.++..|+.+-|+|+-...++++ +.+|++||..+++..+.++||+..|..++|+..|++||+++.|-.+++||..+....
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC 185 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH
Confidence 4788999999999999999997 899999999999999999999999999999999999999999999999999986556
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
.+.+.+|...|.+++|-|.|.++++++.|. .|..|..+++.++.+|++|...|..++.+.||. ++++|+.|.++++
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~---tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~v 261 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDN---TIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRV 261 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeeccccc---ceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecCCCceEEE
Confidence 668889999999999999999999999998 578899999999999999999999999999998 7999999999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCC---------------CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPD---------------GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
|-+.++++...+++|+.+|.+++|.|. ++++.+++.|++|++||+.++.++.++ .+|...|.
T Consensus 262 W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL---~ghdnwVr 338 (406)
T KOG0295|consen 262 WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL---VGHDNWVR 338 (406)
T ss_pred EEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE---ecccceee
Confidence 999999999999999999999999873 258999999999999999999999999 49999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
.++|+|.|+||+++..|+++++||+ .+.++++.+.
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl----~~~~cmk~~~----------------------------------------- 373 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDL----KNLQCMKTLE----------------------------------------- 373 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEe----ccceeeeccC-----------------------------------------
Confidence 9999999999999999999999999 7777776554
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
.|..-++++.|... ..++++|+-|..+++|.
T Consensus 374 -----ah~hfvt~lDfh~~-~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 374 -----AHEHFVTSLDFHKT-APYVVTGSVDQTVKVWE 404 (406)
T ss_pred -----CCcceeEEEecCCC-CceEEeccccceeeeee
Confidence 46667788888721 55888999999999885
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=274.91 Aligned_cols=304 Identities=22% Similarity=0.353 Sum_probs=264.6
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
...+.+.+|..+|+.+-|+|+-. +++++++|++|++||..++++...+++|...+..++|+..|++|++++.|=.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 45566788999999999999988 79999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC-CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 218 DGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 218 d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|.++ .+++... .+|...|.+++|-|.|.++++++.|.+|+.|++ .++-++.++.
T Consensus 178 d~~~~~~c~ks~---~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~----~tg~cv~t~~------------------ 232 (406)
T KOG0295|consen 178 DFDTFFRCIKSL---IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC----DTGYCVKTFP------------------ 232 (406)
T ss_pred eHHHHHHHHHHh---cCcccceeeEEEEecCCeeeecccccceeEEec----ccceeEEecc------------------
Confidence 9876 3344433 489999999999999999999999999999999 7777776554
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
+|...|..+... + +.++++++.|.++++|-..+.++......|..+|.|
T Consensus 233 ----------------------------~h~ewvr~v~v~~D--Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc 282 (406)
T KOG0295|consen 233 ----------------------------GHSEWVRMVRVNQD--GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC 282 (406)
T ss_pred ----------------------------CchHhEEEEEecCC--eeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence 566677777777 5 899999999999999999999888888889999999
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
+++.....+....+
T Consensus 283 i~wap~~~~~~i~~------------------------------------------------------------------ 296 (406)
T KOG0295|consen 283 IAWAPESSYPSISE------------------------------------------------------------------ 296 (406)
T ss_pred EEecccccCcchhh------------------------------------------------------------------
Confidence 88743221111000
Q ss_pred EEEc-cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccc
Q 007229 456 CAIA-PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNML 534 (612)
Q Consensus 456 ~~~s-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 534 (612)
..=+ ..++++++++.|++|++||+.++.+ ..++.+|.+.|..++|+|.|+||+++.+|+++++||++++++. +.+.
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm-k~~~ 373 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM-KTLE 373 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee-eccC
Confidence 0000 1457899999999999999999987 8999999999999999999999999999999999999999997 6677
Q ss_pred ccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 535 FHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 535 ~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
.|..-++++.|..+..++++|+-|.++++|..
T Consensus 374 ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 89999999999999999999999999999975
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=261.83 Aligned_cols=297 Identities=18% Similarity=0.323 Sum_probs=255.0
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
+..+.+|++.|..+.|+|+|.++|||+.|..|.+|++.....-.-.+++|++.|..+.|.+|+..+++++.|. .++.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk---~v~~ 116 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK---TVRG 116 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc---eEEE
Confidence 3346799999999999999999999999999999997766555557889999999999999999999999998 6788
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
|+..+|+.++.+++|...|.++.-+.-|..++.+++.|+++++||+++...++++. ...+++++.|..++..+++|+-|
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 88889999999999999999999777888899999999999999999998888774 45679999999999999999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
+.|++||++.+.....+ .+|..+|+.+..+|+|.++.+-+.|.++++||+..-....+++..+....
T Consensus 196 n~ikvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~---------- 262 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI---------- 262 (338)
T ss_pred CceeeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch----------
Confidence 99999999999999998 49999999999999999999999999999999822111111111111100
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
|.-
T Consensus 263 -----------------------------------------------------------------------------hnf 265 (338)
T KOG0265|consen 263 -----------------------------------------------------------------------------HNF 265 (338)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
..
T Consensus 266 ------------------------------------------------------------------------------ek 267 (338)
T KOG0265|consen 266 ------------------------------------------------------------------------------EK 267 (338)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 01
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
....++|+|+++.+..|+.|..+++||.....+ ...+++|.+.|++++|+|...+|.+++.|++|++=+
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~--lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI--LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccE--EEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 234578999999999999999999999988777 788999999999999999999999999999998743
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=282.26 Aligned_cols=285 Identities=19% Similarity=0.330 Sum_probs=249.4
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
..+-.|..+.|.|+|+.|++|+ .|.+.+|+..+-.-...+..|...|+++.||++|.+++||+.+|.|++|+..-.. +
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V 172 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V 172 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h
Confidence 3455889999999999999999 6999999986544444567899999999999999999999999999999988664 3
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
+.....|...|++++|||+...++++++|+ .++||+....+....+.+|.-.|.+++|+|... ++++++.|..|++
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg---~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKl 248 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDG---TIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKL 248 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCC---eEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCCceeEe
Confidence 333344558999999999999999999999 578888778888888999999999999999988 7999999999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEE
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTV 253 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~ 253 (612)
||.++++++.++.+|...|..+.|+|++++|++++.|..++++|+++.+.+..+ ++|...+.++.|+| ...+|.++
T Consensus 249 WDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~---r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY---RGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred ecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh---hcchhhheeeccccccccceeec
Confidence 999999999999999999999999999999999999999999999988888888 48999999999999 66788899
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+.||.|..|.+ ...+++ ...-.+|...|+++
T Consensus 326 g~Dgsvvh~~v----~~~~p~---------------------------------------------~~i~~AHd~~iwsl 356 (464)
T KOG0284|consen 326 GSDGSVVHWVV----GLEEPL---------------------------------------------GEIPPAHDGEIWSL 356 (464)
T ss_pred cCCCceEEEec----cccccc---------------------------------------------cCCCcccccceeee
Confidence 99999999998 312211 12334699999999
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcC
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
+|++- +.+|++|+.|.++++|...
T Consensus 357 ~~hPl-Ghil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 357 AYHPL-GHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ecccc-ceeEeecCCCcceeeeccC
Confidence 99943 8999999999999999654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=271.05 Aligned_cols=495 Identities=16% Similarity=0.173 Sum_probs=365.8
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-CCeEEEEECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-GRIDDLQWSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
+.--...|+++|||.+.+.||.+-.||.|.||++...-.+...+.++. ..|.+++|++. .+|.+.+.++ .+.-|+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg---~i~EwD 96 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSG---SITEWD 96 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCc---eEEEEe
Confidence 344567899999999999999999999999999999876666676655 47999999954 4666666666 345555
Q ss_pred ecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEcC
Q 007229 134 WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
..+++++..+....+.|++++.+|.+. .++.|+.||.+..++..+++.... +....+.|.+++|+|++..++.|+.|
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 559999999999999999999999998 699999999888999888876654 44556899999999999999999999
Q ss_pred CcEEEEecCCCCeeeeee-----ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 212 RKGLIYDGKSGEKIGEFS-----SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
|.|++||..++..+.... ..+....-|+++.|..++ .+++|...|+|++||. ..+.+++.
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~----~~gTLiqS---------- 240 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDS----IFGTLIQS---------- 240 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcc----cCcchhhh----------
Confidence 999999999998877321 111234457788888665 5888888999999998 66655544
Q ss_pred eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee--
Q 007229 287 DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK-- 364 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-- 364 (612)
...|...|.+++..+. ++.+++++.|+.+..+...+.....
T Consensus 241 ------------------------------------~~~h~adVl~Lav~~~-~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 241 ------------------------------------HSCHDADVLALAVADN-EDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred ------------------------------------hhhhhcceeEEEEcCC-CCeEEEccCCCceEEEEecCCccceee
Confidence 3457778888888732 6899999999999998887764421
Q ss_pred --eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 365 --LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 365 --~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
....|...+.+++.-+..+++++.|..+.+-........... .....+........-..++++.-....+.+|.-+.
T Consensus 284 ~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~-~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS 362 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHR-QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGS 362 (691)
T ss_pred eccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhh-ccccccccceeecCccceEEEEeccccccceeccC
Confidence 222389999999998889999999999988776653332111 22222222233333333556666666777776333
Q ss_pred c----------eee--ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee---eccccCceEEEEEcCCCc
Q 007229 443 V----------MSK--IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV---LEKHRGAITVIQYSPDVS 507 (612)
Q Consensus 443 ~----------~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~ 507 (612)
. +.. .+....|.+.++||+|++++.+.- ..+++|.++......... ..........+.|+-|+.
T Consensus 363 ~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~ 441 (691)
T KOG2048|consen 363 VILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKN 441 (691)
T ss_pred cccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCc
Confidence 2 111 224567999999999999999875 357888876532211111 222334678888999888
Q ss_pred EEEEEc-CCCeEEEEecCCcceee--ec-ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccC
Q 007229 508 MFASAD-GNREAIVWDRVSKEVKL--NN-MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGG 583 (612)
Q Consensus 508 ~l~~~~-~d~~i~iwd~~~~~~~~--~~-~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~ 583 (612)
.++.++ .+..+.+.++++..... .. ..+....|..+..||+|++||+.+.+|.|.+|++++.. .......-...
T Consensus 442 k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~--~~~l~~rln~~ 519 (691)
T KOG2048|consen 442 KLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE--SHLLKVRLNID 519 (691)
T ss_pred eEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce--eecchhccCcc
Confidence 888777 67788888887655421 11 12345679999999999999999999999999999832 22222234478
Q ss_pred eeeEEEe--cCceEEEccCCCeEEEEEec
Q 007229 584 VYGVAFM--DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 584 v~~~~~~--~~~~l~s~~~d~~i~~w~~~ 610 (612)
|+.++|+ +...|+.+..|+.+.-||++
T Consensus 520 vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred eeeeeccccccCcEEEEecCCeEEEEecc
Confidence 9999999 55679999999999999984
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=300.37 Aligned_cols=240 Identities=23% Similarity=0.321 Sum_probs=223.2
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCC-------------------------------ceeeEeccCCCceEEE
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKP-------------------------------LHVEFYGEHGYPVTVA 65 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~-------------------------------~~~~~~~~h~~~v~~~ 65 (612)
...++|..||+|++.||.|. +..|++|.+... ...+.+.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 34789999999999999987 899999998731 1234477999999999
Q ss_pred EECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc
Q 007229 66 RYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG 145 (612)
Q Consensus 66 ~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 145 (612)
.|+|+.++|+++|.|++||+|.+.+..++. ..++|..+|..+.|+|-|-|+|+++.|+. -++|.-+...+++.+.+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V-~y~GH~~PVwdV~F~P~GyYFatas~D~t---ArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLV-IYKGHLAPVWDVQFAPRGYYFATASHDQT---ARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEE-EecCCCcceeeEEecCCceEEEecCCCce---eeeeecccCCchhhhcc
Confidence 999999999999999999999999998554 78899999999999999999999999984 48888889999999999
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
|...|.|+.|+|+..| +++||.|.+||+||+.+|..++.+.||.++|.+++|||+|++|++|+.||.|.+||+.+++.+
T Consensus 534 hlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred cccccceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 9999999999999996 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..+ .+|.+.|.++.|+.+|..|++++.|.+|++||+.
T Consensus 613 ~~l---~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 613 KQL---KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred hhh---hcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 988 4899999999999999999999999999999993
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=268.17 Aligned_cols=298 Identities=19% Similarity=0.315 Sum_probs=261.2
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
..+.+.+|.+.|.|+++.|-+.++++|+.|++|+|||+.+++ ++..+.+|...+..+++|+-..||.+++.++ .+.
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~rHpYlFs~gedk---~VK 218 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKRHPYLFSAGEDK---QVK 218 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeecccCceEEEecCCC---eeE
Confidence 345688999999999999999999999999999999999998 8889999999999999999999999999998 678
Q ss_pred EEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 131 AFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.|++...+.++.+.||-..|.+++.+|.-+ +|++|+.|.++++||+++...+..+.||..+|..+.+.|-...+++|+.
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 899989999999999999999999999988 7999999999999999999999999999999999999998888999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
|++|++||+..|+....+ ..|...+.+++.+|....+++++.| .++-|++ ..+..+.
T Consensus 298 D~tvrlWDl~agkt~~tl---t~hkksvral~lhP~e~~fASas~d-nik~w~~----p~g~f~~--------------- 354 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITL---THHKKSVRALCLHPKENLFASASPD-NIKQWKL----PEGEFLQ--------------- 354 (460)
T ss_pred CceEEEeeeccCceeEee---ecccceeeEEecCCchhhhhccCCc-cceeccC----Cccchhh---------------
Confidence 999999999999998888 3889999999999999999999887 6899998 5444433
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
.+.+|..-+.+++... ...+++|+.+|.+.+||.+++...+....
T Consensus 355 -------------------------------nlsgh~~iintl~~ns--D~v~~~G~dng~~~fwdwksg~nyQ~~~t-- 399 (460)
T KOG0285|consen 355 -------------------------------NLSGHNAIINTLSVNS--DGVLVSGGDNGSIMFWDWKSGHNYQRGQT-- 399 (460)
T ss_pred -------------------------------ccccccceeeeeeecc--CceEEEcCCceEEEEEecCcCcccccccc--
Confidence 3566888888888886 78999999999999999988765443210
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
....-.+...
T Consensus 400 ----------------------------------------------------------------------~vqpGSl~sE 409 (460)
T KOG0285|consen 400 ----------------------------------------------------------------------IVQPGSLESE 409 (460)
T ss_pred ----------------------------------------------------------------------cccCCccccc
Confidence 0000112233
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccC
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISG 481 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 481 (612)
..|.+.+|...|..|++|..|.+|++|.-+.
T Consensus 410 agI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 410 AGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cceeEEeecccCceEEeccCCcceEEEeccc
Confidence 4689999999999999999999999998654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=249.05 Aligned_cols=282 Identities=21% Similarity=0.293 Sum_probs=234.7
Q ss_pred eeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce--ee-eeeeecCCCeEEEEECCCCCEEEEEeCCCCe
Q 007229 51 HVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV--LK-NEFKVLSGRIDDLQWSPDGLRIVACGDGKGK 126 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~--~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 126 (612)
.++.+.+|.++|..++|+|- |..||+++.|+.|+||+...+.. .+ ..-.+|+..|++++|+|.|++|++++.+.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~-- 83 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA-- 83 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc--
Confidence 45678899999999999998 99999999999999999995332 22 22247999999999999999999999998
Q ss_pred eeEEEEEecC----CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC---CCeeeecccccccceEEEEEC
Q 007229 127 SFVRAFMWDS----GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP---PFKFKLSHREHSNFVNCIRFS 199 (612)
Q Consensus 127 ~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s 199 (612)
.+.+|.. -+++..+.||...|.+++|+++|+| ||+|++|+.|-+|.+. ..++...+++|...|..+.|+
T Consensus 84 ---t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 84 ---TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ---eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 3555553 3789999999999999999999995 9999999999999876 456677799999999999999
Q ss_pred CCCCeEEEEEcCCcEEEEecCCC---CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEee
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSG---EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 276 (612)
|...+|++++.|++|++|+-..+ ++.+++ .+|...|.+++|++.|..|++++.|+++++|.. ..
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl---~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~----~~------ 226 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL---DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL----YT------ 226 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEe---cCccceEEEEEecCCCceEEEecCCcceEeeee----cc------
Confidence 99999999999999999987633 345555 589999999999999999999999999999996 10
Q ss_pred eeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
.....|..++..+.+. ...|++++.|+.|+++.
T Consensus 227 --------------------------------------------~~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 227 --------------------------------------------DLSGMHSRALYDVPWD---NGVIASGGGDDAIRLFK 259 (312)
T ss_pred --------------------------------------------CcchhcccceEeeeec---ccceEeccCCCEEEEEE
Confidence 0012266778888887 57899999999999997
Q ss_pred cCCceee-------eeceecccceEEEEee---ccEEEEecCCCeEEEEecC
Q 007229 357 RGVGYSS-------KLEKKYDARIKCLAAV---EEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 357 ~~~~~~~-------~~~~~~~~~i~~~~~~---~~~l~~~~~~~~i~~~~~~ 398 (612)
....... .....|...|+++.++ .++|++++.||.+++|.+.
T Consensus 260 ~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6642111 1223488899999993 5799999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=282.44 Aligned_cols=474 Identities=16% Similarity=0.244 Sum_probs=344.9
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
++.-+.+|..++|+|...+++++-..|.|++||..-+. +...+..|.++|..++|+|.+..++++|+|. .|++|++
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-li~rFdeHdGpVRgv~FH~~qplFVSGGDDy---kIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDY---KIKVWNY 80 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-HHhhhhccCCccceeeecCCCCeEEecCCcc---EEEEEec
Confidence 55567889999999999999999999999999999888 6678999999999999999999999999998 6899999
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
++.+++.++.||.+.|..+.|++.-++ ++++|.|.+|+||+..+++++..+.||...|.|..|+|...++++++-|.+|
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 999999999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCe---------------------------eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecC
Q 007229 215 LIYDGKSGEK---------------------------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267 (612)
Q Consensus 215 ~vwd~~~~~~---------------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~ 267 (612)
+|||+..-+. +.. ...++|...|.-++|+|.-..+++|+.|..|++|.+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK-~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm--- 235 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK-HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM--- 235 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee-eeecccccccceEEecCCcceEEecCCcceeeEEEe---
Confidence 9999853110 001 124589999999999999999999999999999998
Q ss_pred CCCCeeEeeeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
... +.+.........+.+.++.+. .+.+++.++|+.|++||+.. ...++.++...+..+.++.++ .-.++.
T Consensus 236 -net---KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-Rt~v~tfrrendRFW~laahP--~lNLfA 308 (1202)
T KOG0292|consen 236 -NET---KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-RTSVQTFRRENDRFWILAAHP--ELNLFA 308 (1202)
T ss_pred -ccc---cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc-ccceeeeeccCCeEEEEEecC--Ccceee
Confidence 322 223333333444566666666 58899999999999999665 445667777778888888886 455566
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccC----CCcceeeecC
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG----SQPLDLSLAL 421 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 421 (612)
++.|+-+.+|.++... .+.+.+++.|+-.- |..|+.+|+.+.+......+... .++.+++++|
T Consensus 309 AgHDsGm~VFkleREr------------pa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNp 375 (1202)
T KOG0292|consen 309 AGHDSGMIVFKLERER------------PAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNP 375 (1202)
T ss_pred eecCCceEEEEEcccC------------ceEEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeecc
Confidence 6677777777665332 23344455555554 88999999998665444444433 4677888999
Q ss_pred CCCcEEEEEe-eccEEE-ee---cccce---eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc
Q 007229 422 SSPELALVST-ESGVIL-LD---SLKVM---SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH 493 (612)
Q Consensus 422 ~~~~~~~~~~-~~~~~~-~~---~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 493 (612)
....+++... +++... +. ..... ..........++ |-..+++.+.--.+..+.+-++.+... +.+...
T Consensus 376 ae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vt---kkl~~~ 451 (1202)
T KOG0292|consen 376 AENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVT---KKLLLP 451 (1202)
T ss_pred ccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceE-EEEecceEEEEecCcceEEecccchhh---hcccCc
Confidence 8877666643 223221 11 10000 000111112222 222222333333344555555554332 222211
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.....|-+.-.|.+|+.. ...|.++|++..+..... ....+..+.||+|..++|--+. .+|.|.+.+-
T Consensus 452 -~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si---~~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL 519 (1202)
T KOG0292|consen 452 -ESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSI---KVSKVKYVVWSNDMSRVALLSK-HTITIADKKL 519 (1202)
T ss_pred -ccccceeeccCccEEEEc--CCeEEEEEeecceEEEEE---ecCceeEEEEcCccchhhhccc-ceEEEEecch
Confidence 234556666677666654 347999999888776332 3567899999999988776653 4577777553
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=295.46 Aligned_cols=282 Identities=26% Similarity=0.419 Sum_probs=233.0
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
.++..-...++|..||+|+++||.|-.|..|++|.+...+ ++ .++. ...+. .+=+.+.+- ...+.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~-~lk~-~~~l~---------~~d~~sad~---~~~~~ 436 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LK-KLKD-ASDLS---------NIDTESADV---DVDML 436 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hc-cccc-hhhhc---------cccccccch---hhhhc
Confidence 3344456789999999999999999999999999998754 22 1111 11110 010111111 01234
Q ss_pred EecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC
Q 007229 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR 212 (612)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 212 (612)
+-+.+....++.+|.++|..+.|+|+.++ |++|++|+++|+|.+.+..++..++||..||..+.|+|.|-|+|+++.|+
T Consensus 437 D~~~~~~~~~L~GH~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 437 DDDSSGTSRTLYGHSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred cccCCceeEEeecCCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCc
Confidence 44456667779999999999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
+.++|......+++.+ .+|.+.|.|+.|+|+..|+++|+.|.++++||+ .++..++.|.
T Consensus 516 tArLWs~d~~~PlRif---aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv----~~G~~VRiF~-------------- 574 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIF---AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV----STGNSVRIFT-------------- 574 (707)
T ss_pred eeeeeecccCCchhhh---cccccccceEEECCcccccccCCCCceEEEEEc----CCCcEEEEec--------------
Confidence 9999999998888888 499999999999999999999999999999999 4443332221
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDAR 372 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 372 (612)
|
T Consensus 575 --------------------------------G----------------------------------------------- 575 (707)
T KOG0263|consen 575 --------------------------------G----------------------------------------------- 575 (707)
T ss_pred --------------------------------C-----------------------------------------------
Confidence 1
Q ss_pred eEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccce
Q 007229 373 IKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT 452 (612)
Q Consensus 373 i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (612)
|..+
T Consensus 576 ----------------------------------------------------------------------------H~~~ 579 (707)
T KOG0263|consen 576 ----------------------------------------------------------------------------HKGP 579 (707)
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 2235
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
|++++|||+|++|++|++||.|.+||+.++++ ...+.+|++.|.++.||.||..||+++.|.+|++||+.....
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 88899999999999999999999999999988 788999999999999999999999999999999999865443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=274.63 Aligned_cols=285 Identities=22% Similarity=0.395 Sum_probs=247.2
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
-+..|..+.|.|+|+.|++|+..|.+.+|+..+-. ....+..|...|+++.|+++|.+++++..++ +|++|..+-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG---~iKyWqpnm- 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGTWMISGDKGG---MIKYWQPNM- 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCCEEEEcCCCc---eEEecccch-
Confidence 45689999999999999999999999999986554 3446778999999999999999999998887 445444443
Q ss_pred ceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 138 TTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 138 ~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
..+..+.+| ...|++++|+|++. .+++|+.||+|+|||....+....+.+|.-.|.+++|+|...++++++.|..|++
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 334445554 59999999999887 6999999999999999999888889999999999999999999999999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
||.+++.++.++ ..|...|..+.|+|++++|++++.|..++++|+ .+.+
T Consensus 249 WDprSg~cl~tl---h~HKntVl~~~f~~n~N~Llt~skD~~~kv~Di----R~mk------------------------ 297 (464)
T KOG0284|consen 249 WDPRSGSCLATL---HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDI----RTMK------------------------ 297 (464)
T ss_pred ecCCCcchhhhh---hhccceEEEEEEcCCCCeeEEccCCceEEEEeh----hHhH------------------------
Confidence 999999999998 499999999999999999999999999999999 3222
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee-eeceecccceEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS-KLEKKYDARIKC 375 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~i~~ 375 (612)
.+..+++|...++++.|++....+|.+|+.||.|..|.+...+.. .....|...|.+
T Consensus 298 ----------------------El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 298 ----------------------ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS 355 (464)
T ss_pred ----------------------HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence 235667899999999999777999999999999999999844444 445559999999
Q ss_pred EEe--eccEEEEecCCCeEEEEecCCCC
Q 007229 376 LAA--VEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 376 ~~~--~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
+++ -+..|++++.|.++++|.-....
T Consensus 356 l~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 356 LAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eeccccceeEeecCCCcceeeeccCCCC
Confidence 999 68899999999999999865443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=269.20 Aligned_cols=293 Identities=21% Similarity=0.297 Sum_probs=248.2
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
..+.+..|.+.|.-+.||++|+|||+++.|.+..+|++..... +.+++.+|..+|..+.||||.++|++|+.+. .
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e---~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE---V 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH---h
Confidence 3456889999999999999999999999999999999875543 6778999999999999999999999999988 3
Q ss_pred EEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEE
Q 007229 129 VRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLI 206 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 206 (612)
+.+|+.++|...+.++ +|...+.+++|.|||. .+++|+.|+++..||+.... ....++- ...|.+++.++||++++
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVL 370 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEE
Confidence 5666666888887775 3578999999999998 59999999999999987543 3333332 25699999999999999
Q ss_pred EEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 207 SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
+.+.|..|++++.++......+ ....+|++++.+.|++++++.-.+..+++||+ +....++.+.++... .
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~li----se~~~its~~iS~d~k~~LvnL~~qei~LWDl----~e~~lv~kY~Ghkq~--~ 440 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLI----SEEQPITSFSISKDGKLALVNLQDQEIHLWDL----EENKLVRKYFGHKQG--H 440 (519)
T ss_pred EEecccceeeechhhhhhhccc----cccCceeEEEEcCCCcEEEEEcccCeeEEeec----chhhHHHHhhccccc--c
Confidence 9999999999999888777666 56789999999999999999999999999999 777777777665422 2
Q ss_pred eeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 287 DMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 287 ~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
-.+.+|.-. ...+++|++|+.|++|+ +..++++..+.||...|++++|++.+..++++++.||+|++|-...
T Consensus 441 fiIrSCFgg~~~~fiaSGSED~kvyIWh-r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSEDSKVYIWH-RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEeccCCCCcceEEecCCCceEEEEE-ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 233333333 57899999999999999 6667889999999999999999988899999999999999997653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=255.71 Aligned_cols=487 Identities=14% Similarity=0.132 Sum_probs=352.6
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCC-ceeeEeccC-CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKP-LHVEFYGEH-GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~-~~~~~~~~h-~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
..|.++|||.+.+.||.+. +|.|.||++..+ -+...+.++ ...|.+++|++ +..|.+.+.+|.|.-||+.+.++ .
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~-~ 103 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ-K 103 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce-e
Confidence 4788999999999999997 899999999865 344556666 56799999995 45688888999999999999984 4
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCcee--eeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTV--GDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
..+....+.|.+++.+|.+..++.+++++ .+++.+ .++.. ..|....++|.+++|+|++. .+++|+.||.
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddG-----vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDG-----VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGV 177 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCc-----eEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCce
Confidence 57777889999999999999999998888 244444 33332 34556679999999999997 5999999999
Q ss_pred EEEEeCCCCeeeec-------cc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 172 VNFYEGPPFKFKLS-------HR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 172 i~~wd~~~~~~~~~-------~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
|++||...+..... +. +...-|.++.|-.++ .|++|...|+|.+||...+..++.+. .|.+.|.+++.
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~---~h~adVl~Lav 253 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS---CHDADVLALAV 253 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhh---hhhcceeEEEE
Confidence 99999999887762 11 133457888888766 69999999999999999999999883 89999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
.++++++++++.|+.+..|.. .+...- +. .....
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~----~~~~~~--wv----------------------------------------~~~~r 287 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSL----TTNKSE--WV----------------------------------------INSRR 287 (691)
T ss_pred cCCCCeEEEccCCCceEEEEe----cCCccc--ee----------------------------------------eeccc
Confidence 999999999999999988887 222110 00 01223
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
..|...+.+++..+ ..+++|+.|..+.+-.....+...-... +...-.......++++.--.+..+.+|.+.+..
T Consensus 288 ~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~ 364 (691)
T KOG2048|consen 288 DLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVI 364 (691)
T ss_pred cCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcc
Confidence 45888899998884 5999999999998876554222111110 111111111133444444455566666665542
Q ss_pred CC----c----cceeccCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeeec------ccceEEEEEEccCCCeE
Q 007229 402 CG----D----AEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKID------LGFTVTACAIAPDGSEA 465 (612)
Q Consensus 402 ~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~i~~~~~s~~~~~l 465 (612)
.. . ...........+.+++|++. .++.+.-....++. ....+.... ..-....+.|+-|+..+
T Consensus 365 ~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~-~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~ 443 (691)
T KOG2048|consen 365 LQGEYNYIHLLKLFTKEKENISCAAISPDGN-LIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKL 443 (691)
T ss_pred cccccChhhheeeecCCccceeeeccCCCCC-EEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceE
Confidence 11 1 11223344567788899984 45555544444443 111221111 22356778888888888
Q ss_pred EEEe-cCCeEEEEEccCcccccceeec--cccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 466 IVGG-QNGKLHIYSISGNTLTEEMVLE--KHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 466 ~~~~-~dg~v~i~d~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
+..+ ....+.++++.+........+. +....|..+..||+|++||+.+.+|.|.+|++++.+.... ...-...+++
T Consensus 444 ~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l-~~rln~~vTa 522 (691)
T KOG2048|consen 444 FLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLL-KVRLNIDVTA 522 (691)
T ss_pred EEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecc-hhccCcceee
Confidence 8777 6778888888776543232222 3456799999999999999999999999999999887532 2234578999
Q ss_pred EEecC-CCcEEEEeecCcEEEEEEccC
Q 007229 543 LAWSP-SSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 543 ~~~s~-~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++|+| +.+.|+.+..|+++.=||++.
T Consensus 523 ~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred eeccccccCcEEEEecCCeEEEEecch
Confidence 99995 667899999999999999954
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=251.74 Aligned_cols=289 Identities=23% Similarity=0.350 Sum_probs=244.7
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC-CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG-EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
+..+.+|.+.|..+.|+|+|.++++|+.|..|.+|+.... +....+ ++|.+.|..+.|.+|++.+++++.|.+++.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l---kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL---KGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee---ccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 3457799999999999999999999999999999995433 233333 599999999999999999999999999999
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
||+ ++++..+.+ ++|..-++.+.....+..
T Consensus 117 wD~----~tG~~~rk~----------------------------------------------k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 117 WDA----ETGKRIRKH----------------------------------------------KGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred Eec----ccceeeehh----------------------------------------------ccccceeeecCccccCCe
Confidence 999 777776544 457777777776655578
Q ss_pred EEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecC
Q 007229 342 TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421 (612)
Q Consensus 342 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (612)
++.+++.|+++++||++.......
T Consensus 147 lv~SgsdD~t~kl~D~R~k~~~~t-------------------------------------------------------- 170 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKEAIKT-------------------------------------------------------- 170 (338)
T ss_pred EEEecCCCceEEEEeecccchhhc--------------------------------------------------------
Confidence 888999999999999987654433
Q ss_pred CCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEE
Q 007229 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQ 501 (612)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~ 501 (612)
++.+.+++++.|..++..+.+|+-|+.|++||++.+.. ...+.+|..+|+.+.
T Consensus 171 -------------------------~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~ls 223 (338)
T KOG0265|consen 171 -------------------------FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLS 223 (338)
T ss_pred -------------------------cccceeEEEEEecccccceeeccccCceeeeccccCcc--eEEeecccCceeeEE
Confidence 22346799999999999999999999999999998877 789999999999999
Q ss_pred EcCCCcEEEEEcCCCeEEEEecCCcc---eeeeccccccc----ceeEEEecCCCcEEEEeecCcEEEEEEccCCCccee
Q 007229 502 YSPDVSMFASADGNREAIVWDRVSKE---VKLNNMLFHTA----RINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRI 574 (612)
Q Consensus 502 ~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~----~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 574 (612)
.+|+|.++.+-+.|.++++||++... .....+.+|.. ....++|+|+++.+..|+.|+.+++||... . ..+
T Consensus 224 ls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~-r-~~l 301 (338)
T KOG0265|consen 224 LSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-R-RIL 301 (338)
T ss_pred eccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc-c-cEE
Confidence 99999999999999999999986533 22345555432 345689999999999999999999999987 5 788
Q ss_pred eeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 575 TIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 575 ~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
..+.+|.+.|..++|. ....|.+++.|.+|.+=++
T Consensus 302 yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 302 YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 8999999999999999 7888999999999987443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=251.10 Aligned_cols=487 Identities=12% Similarity=0.110 Sum_probs=364.0
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CC--------EEEEEeCCCCceeeEeccCCCceEEEEECC--CCCEEEEe--eCcC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GR--------SVLIRYLDKPLHVEFYGEHGYPVTVARYSP--NGEWIASA--DVSG 81 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~--------~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~las~--~~d~ 81 (612)
..|...|.|++.+||--.+++|- .+ .++|||..+-..+..+..-...|+|++||+ .|.+|+.. +.+.
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h 180 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPH 180 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcc
Confidence 35678999999999999998775 22 799999998888888888889999999998 45666665 4566
Q ss_pred eEEEeecCCCceeeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCceee---eeccCC-ceEEEEEEc
Q 007229 82 SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGTTVG---DFDGHS-RRVLSCEFK 156 (612)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~---~~~~~~-~~v~~~~~~ 156 (612)
.+.|||.+.+. .....+..+..|....|.|.+. .++++|... +..|.+..+.... .|+++. ..|.|++|.
T Consensus 181 ~lSVWdWqk~~-~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H----~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 181 MLSVWDWQKKA-KLGPVKTSNEVVFLATFHPTDPNLIITCGKGH----LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL 255 (626)
T ss_pred ccchhhchhhh-ccCcceeccceEEEEEeccCCCcEEEEeCCce----EEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence 79999999887 3446667778899999999665 555666554 5566666554433 344433 689999999
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
++|+ ++||..+|.|.+|+..+.+..+....|.+.|.+++...+|. |++|+.|+.|..|| ..-+.++....+ ...+
T Consensus 256 engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elP-e~~G 330 (626)
T KOG2106|consen 256 ENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELP-EQFG 330 (626)
T ss_pred CCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCc-hhcC
Confidence 9997 99999999999999988888877779999999999999997 55699999999999 555555554333 4556
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
+|..++=...+ |++|...+.|..=.+ +++-.+..+-... ...-.+...+.+++++++.++.+++|+
T Consensus 331 ~iRtv~e~~~d--i~vGTtrN~iL~Gt~----~~~f~~~v~gh~d----elwgla~hps~~q~~T~gqdk~v~lW~---- 396 (626)
T KOG2106|consen 331 PIRTVAEGKGD--ILVGTTRNFILQGTL----ENGFTLTVQGHGD----ELWGLATHPSKNQLLTCGQDKHVRLWN---- 396 (626)
T ss_pred CeeEEecCCCc--EEEeeccceEEEeee----cCCceEEEEeccc----ceeeEEcCCChhheeeccCcceEEEcc----
Confidence 77777654323 677766666655555 3333322222111 223334445588999999999999999
Q ss_pred CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEE
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWR 394 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~ 394 (612)
...+.--..-..+..++.|.+ ...++.|+..|...+.|.++...+..... +.++.++.+ ++.+++.++.|+.|++
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhp--sg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHP--SGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred CCceeEEEEecCceeEeeccC--cceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 222222233456778888886 34999999999999999999887777764 888999988 8999999999999999
Q ss_pred EecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeE
Q 007229 395 VPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKL 474 (612)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 474 (612)
|.+...... ....... +..+|+.+.||+|++++.+-+-|-.|
T Consensus 474 y~Vs~~g~~-------------------------------------y~r~~k~-~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 474 YRVSANGRK-------------------------------------YSRVGKC-SGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred EEECCCCcE-------------------------------------EEEeeee-cCceeEEeeecCCCceEEeccCceEE
Confidence 988765532 0111111 23679999999999999999999999
Q ss_pred EEEEccCcccc-cc---------------eeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc--eeeeccccc
Q 007229 475 HIYSISGNTLT-EE---------------MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE--VKLNNMLFH 536 (612)
Q Consensus 475 ~i~d~~~~~~~-~~---------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~ 536 (612)
..|....-+.. .. .....+...|..++-+.+.+++|+|.+.|+|++|...-.+ .....+.+|
T Consensus 516 LyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh 595 (626)
T KOG2106|consen 516 LYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH 595 (626)
T ss_pred EEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc
Confidence 99944322110 00 0112355667778888899999999999999999865433 334557889
Q ss_pred ccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 537 TARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 537 ~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
.+.|++++|..+..+|.+.+.|..|..|++
T Consensus 596 s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 596 SSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999999998888888889999999986
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=265.67 Aligned_cols=292 Identities=23% Similarity=0.369 Sum_probs=239.6
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC---CeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP---FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
..+.+..|.+.|.-+.||++|+| ||+++.|.+..+|++.. .+..+++.+|..+|..+.||||.++|++++.|..+.
T Consensus 216 t~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 44567889999999999999996 99999999999997543 455788999999999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+||..+|.....+. .++...+.+.+|.|||..+++|+.|+++..||+ .++.+..++..
T Consensus 295 lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-----Dgn~~~~W~gv--------------- 352 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-----DGNILGNWEGV--------------- 352 (519)
T ss_pred eccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecC-----Ccchhhccccc---------------
Confidence 99999999998883 346689999999999999999999999999998 34443333221
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
....|.+++..+ +++.+++.+.|..|++++..+......
T Consensus 353 ------------------------------r~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~l---------- 391 (519)
T KOG0293|consen 353 ------------------------------RDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGL---------- 391 (519)
T ss_pred ------------------------------ccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcc----------
Confidence 113466666662 277888878888888887665432211
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
+....+|++
T Consensus 392 -----------------------------------------------------------------------ise~~~its 400 (519)
T KOG0293|consen 392 -----------------------------------------------------------------------ISEEQPITS 400 (519)
T ss_pred -----------------------------------------------------------------------ccccCceeE
Confidence 112347999
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCc--eEEEEEcC-CCcEEEEEcCCCeEEEEecCCcceeeec
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA--ITVIQYSP-DVSMFASADGNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~--i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 532 (612)
..+|.|++++++.-.+..+++||++...+ .....+|... +-.-+|.- +..++|+|++|+.|+||+..+++++ ..
T Consensus 401 ~~iS~d~k~~LvnL~~qei~LWDl~e~~l--v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll-~~ 477 (519)
T KOG0293|consen 401 FSISKDGKLALVNLQDQEIHLWDLEENKL--VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL-AV 477 (519)
T ss_pred EEEcCCCcEEEEEcccCeeEEeecchhhH--HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee-Ee
Confidence 99999999999999999999999997766 6677777654 34445654 5689999999999999999999998 77
Q ss_pred ccccccceeEEEecCC-CcEEEEeecCcEEEEEEccC
Q 007229 533 MLFHTARINCLAWSPS-STMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~-~~~l~s~~~d~~i~iwd~~~ 568 (612)
+.||...|++++|+|. -.++|+|++||+||||-...
T Consensus 478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999994 56899999999999998765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=257.29 Aligned_cols=286 Identities=19% Similarity=0.211 Sum_probs=257.6
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
..|.+.|.|+++.|-.+++++++ |++|.|||+.+|++..++.||-..|..+++|+-..||.+++.|+.|+.||++..+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk- 226 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK- 226 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh-
Confidence 46789999999999999999999 8999999999999999999999999999999999999999999999999999998
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
+.+...+|-..|.+++..|.-..|++++.|. .+++|+..+...+..+.||..+|..+.+.|-++ .+++|+.|++|+
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDs---t~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvr 302 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDS---TIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVR 302 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcc---eEEEeeecccceEEEecCCCCcceeEEeecCCC-ceEEecCCceEE
Confidence 6668999999999999999999999999998 679999999999999999999999999999888 599999999999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
+||+..++...++..|...|.+++.+|....+|+++.|. |+-|++..|..+..+ .+|..-|.+++...|+ ++++|
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl---sgh~~iintl~~nsD~-v~~~G 377 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL---SGHNAIINTLSVNSDG-VLVSG 377 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc---ccccceeeeeeeccCc-eEEEc
Confidence 999999999999999999999999999999999988765 999999999999887 4899999999999877 68889
Q ss_pred eCCCcEEEEEeecCCCCCeeEeee---eccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcC
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTF---ASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~ 314 (612)
+.+|.+.+||. +++...+.. ..+.+-..+..+++.+|+ +.+++++..+.+|++|.-.
T Consensus 378 ~dng~~~fwdw----ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 378 GDNGSIMFWDW----KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CCceEEEEEec----CcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99999999999 665544443 333333445566666666 7899999999999999843
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=273.33 Aligned_cols=294 Identities=20% Similarity=0.328 Sum_probs=250.1
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
.+.+..+.+|+..|+++.|.|....+|++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+++++.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 4567788999999999999995555899999999999999876 899999999999999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCC-CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG-KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
+||+++|+++..+ .....+.++.|.|++ +.+++|+.|+.|+.||+ .+++.++
T Consensus 284 lwDtETG~~~~~f----~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi----Rs~kvvq------------------- 336 (503)
T KOG0282|consen 284 LWDTETGQVLSRF----HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI----RSGKVVQ------------------- 336 (503)
T ss_pred eeccccceEEEEE----ecCCCceeeecCCCCCcEEEEecCCCcEEEEec----cchHHHH-------------------
Confidence 9999999999999 667789999999988 88999999999999999 6666554
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
.+..|.+.|..+.|.+. +..+++.+.|+.+++|+.+.+........
T Consensus 337 ---------------------------eYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~i~~------ 382 (503)
T KOG0282|consen 337 ---------------------------EYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKNIAD------ 382 (503)
T ss_pred ---------------------------HHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchhhcc------
Confidence 34457888999999932 88999999999999999876654433210
Q ss_pred EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEE
Q 007229 375 CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVT 454 (612)
Q Consensus 375 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 454 (612)
.......
T Consensus 383 -------------------------------------------------------------------------~~~hsmP 389 (503)
T KOG0282|consen 383 -------------------------------------------------------------------------PEMHTMP 389 (503)
T ss_pred -------------------------------------------------------------------------hhhccCc
Confidence 0112356
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEccCc-ccccceeeccccC--ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 455 ACAIAPDGSEAIVGGQNGKLHIYSISGN-TLTEEMVLEKHRG--AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 455 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
++..+|++++++.-+.|+.|.+|.+... ++.....+++|.. --..+.|||||++|++|+.||.+.+||.++.+.+ .
T Consensus 390 ~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~-~ 468 (503)
T KOG0282|consen 390 CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV-S 468 (503)
T ss_pred ceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh-h
Confidence 7899999999999999999999987532 2223456777763 4667899999999999999999999999999887 6
Q ss_pred cccccccceeEEEecCCC-cEEEEeecCcEEEEEE
Q 007229 532 NMLFHTARINCLAWSPSS-TMVATGSIDTCVIIYE 565 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~-~~l~s~~~d~~i~iwd 565 (612)
.+.+|..++..+.|+|.. ..+|+++.||.|++||
T Consensus 469 ~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 788899999999999954 5799999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=237.01 Aligned_cols=288 Identities=17% Similarity=0.222 Sum_probs=243.9
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
..+.+..++++|.++.|+-+|+| .++|+.|.+|++|+...+.+++++.+|...|..++.+.|...+++++.|..+.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45667889999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCE
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
+++|+....+ .+|.+.|..++|+.+...+++|+.|.++++||.+ +
T Consensus 88 V~TGkv~Rr~---rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR----S---------------------------- 132 (307)
T KOG0316|consen 88 VNTGKVDRRF---RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR----S---------------------------- 132 (307)
T ss_pred cccCeeeeec---ccccceeeEEEecCcceEEEeccccceeEEEEcc----c----------------------------
Confidence 9999999999 5999999999999999999999999999999982 1
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
...++++.+......|.++... +..+++|+.||+++.||++.+....-.
T Consensus 133 ----------------~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy------------ 181 (307)
T KOG0316|consen 133 ----------------RSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDY------------ 181 (307)
T ss_pred ----------------CCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhh------------
Confidence 1223344455556677777666 678899999999999998876543211
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEE
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAI 458 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 458 (612)
...+|+++.|
T Consensus 182 ----------------------------------------------------------------------~g~pit~vs~ 191 (307)
T KOG0316|consen 182 ----------------------------------------------------------------------FGHPITSVSF 191 (307)
T ss_pred ----------------------------------------------------------------------cCCcceeEEe
Confidence 2347999999
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCce--EEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccc
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAI--TVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFH 536 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 536 (612)
++|++..++++.|+++++.|-+++++ .....+|.+.- ...+++.....+++|++||.|++||+.....+ ..+..+
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGkl--L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-sk~~~~ 268 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKL--LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI-SKLSVV 268 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHH--HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceee-eeeccC
Confidence 99999999999999999999999998 67778887653 44567778889999999999999999999887 446656
Q ss_pred ccc-eeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 537 TAR-INCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 537 ~~~-i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
... |.++.++|.-..|+++.. +.+..|.-+
T Consensus 269 ~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 269 STVIVTDLSCHPTMDDFITATG-HGDLFWYQE 299 (307)
T ss_pred CceeEEeeecccCccceeEecC-Cceeceeeh
Confidence 666 899999998777777754 446677543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=286.62 Aligned_cols=294 Identities=25% Similarity=0.428 Sum_probs=250.2
Q ss_pred EeccC-CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc-eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 54 FYGEH-GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 54 ~~~~h-~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
.+.+| ...|+++.|+|||+++++++.|+.+++|+..+.+ .+...+.+|...|..++|+||++++++++.|. .++|
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~---tiri 229 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDK---TLRI 229 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCc---eEEE
Confidence 34444 8899999999999999999999999999997665 23445689999999999999999999999998 5677
Q ss_pred EEe-cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 132 FMW-DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 132 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
|+. +.+..++++.+|...|++++|+|+++ ++++|+.|++|++||++++++...+.+|.+.|.+++|++++++|++++.
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY 308 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC
Confidence 777 46789999999999999999999996 7999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCC--eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 211 DRKGLIYDGKSGE--KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 211 dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
|+.|++||+.++. +...+....... ++..++|+|+++++++++.|+.+++||+ ..+..+..+..+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l----~~~~~~~~~~~~-------- 375 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDL----RSGKSVGTYTGH-------- 375 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEc----cCCcceeeeccc--------
Confidence 9999999999999 455553222222 6999999999999999999999999999 555555443322
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
...+.
T Consensus 376 --------------------------------------~~~~~------------------------------------- 380 (456)
T KOG0266|consen 376 --------------------------------------SNLVR------------------------------------- 380 (456)
T ss_pred --------------------------------------CCcce-------------------------------------
Confidence 11100
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 381 -------------------------------------------------------------------------------- 380 (456)
T KOG0266|consen 381 -------------------------------------------------------------------------------- 380 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc-cCceEEEEEcCCCcEEEEEc--CCCeEEEEecC
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH-RGAITVIQYSPDVSMFASAD--GNREAIVWDRV 524 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~~ 524 (612)
.+.+...++.++++++|+.|+.|++|++.++.. ...+.+| ...+..+.++|..+++++++ .|+.+++|...
T Consensus 381 ---~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 381 ---CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ---eEecccccCCCCeEEEEeCCceEEEEeCCccch--hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 123334578899999999999999999998766 6778889 89999999999999999998 78999999754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=260.45 Aligned_cols=275 Identities=15% Similarity=0.247 Sum_probs=240.7
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
....++++.++++.+++|..|++|++|| .+.......+.||++.|.++.|. ...+++|+.|.+|++||.+++++..
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD-~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWD-KNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEec-cccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhh
Confidence 3456788899999999999999999999 55566778899999999999988 5699999999999999999999999
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
....|...|..+.+.++++++++.|.++.+||+...... ...
T Consensus 272 tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~i--------------------------------------t~r 313 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDI--------------------------------------TLR 313 (499)
T ss_pred HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHH--------------------------------------HHH
Confidence 988899999999999999999999999999999765522 011
Q ss_pred eee-cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 445 SKI-DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 445 ~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
+.+ .|...|+.+.|+ .+++++++.|.+|++|++.++++ .+++.+|...|.|+.+ .++++++|+.|.+|++||+
T Consensus 314 rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEec
Confidence 111 155667888875 56999999999999999999988 8999999999999987 6889999999999999999
Q ss_pred CCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc-------eeeeecccccCeeeEEEecCceEE
Q 007229 524 VSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS-------RITIKNAHLGGVYGVAFMDDFNVV 596 (612)
Q Consensus 524 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~l~ 596 (612)
+.|.++ ..+.+|..-|.++.| |.+.+++|+.||+|++||+...... |+..+..|++.|..+.| |...++
T Consensus 388 ~~G~cL-RvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-D~fqIv 463 (499)
T KOG0281|consen 388 ECGACL-RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-DEFQII 463 (499)
T ss_pred cccHHH-HHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee-cceEEE
Confidence 999997 779999999999999 6779999999999999999874312 46667789999999999 588899
Q ss_pred EccCCCeEEEEEecc
Q 007229 597 SSGEDACIRVWRLAT 611 (612)
Q Consensus 597 s~~~d~~i~~w~~~~ 611 (612)
+++.|.+|.+||...
T Consensus 464 sssHddtILiWdFl~ 478 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLN 478 (499)
T ss_pred eccCCCeEEEEEcCC
Confidence 999999999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=286.55 Aligned_cols=283 Identities=25% Similarity=0.361 Sum_probs=244.5
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
...|+++.|||||+++++++ ++.+++|+..+.+ .++.+.+|...|.+++|+||++++++++.|++|+|||+......
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 56899999999999999997 8999999998777 77778999999999999999999999999999999999555446
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
.+.+.+|...|++++|+|+|+.+++++.|+ .++||+..+++++..+.+|.+.|++++|++++. .+++++.|+.|++
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~---tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDG---TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRV 314 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCC---cEEEEeccCCeEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEE
Confidence 678999999999999999999999999998 578888889999999999999999999999999 5899999999999
Q ss_pred EeCCCCe--eeecccccccc--eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc---cEEEEEEecCC
Q 007229 175 YEGPPFK--FKLSHREHSNF--VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG---SIYAVSWSPDG 247 (612)
Q Consensus 175 wd~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~ 247 (612)
||+.++. +...+.++... ++++.|+|+++++++++.|+.+++||+..+.....+. +|.. .+.+...++.+
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT---GHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec---ccCCcceeEecccccCCC
Confidence 9999999 55677766655 9999999999999999999999999999999888883 5554 45555667899
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCc-
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGH- 326 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~- 326 (612)
.++++++.|+.|++|++ .++..+ ..+.+|
T Consensus 392 ~~i~sg~~d~~v~~~~~----~s~~~~----------------------------------------------~~l~~h~ 421 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDS----SSGGIL----------------------------------------------QRLEGHS 421 (456)
T ss_pred CeEEEEeCCceEEEEeC----Cccchh----------------------------------------------hhhcCCC
Confidence 99999999999999999 544433 334456
Q ss_pred ccceeEEEEEecCCcEEEEEe--cCCcEEEEEcC
Q 007229 327 VKNVSTLTALKISQQTILSSS--YDGAIIKWIRG 358 (612)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~ 358 (612)
...+..+.++.. ..++++++ .|+.+++|..+
T Consensus 422 ~~~~~~~~~~~~-~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 KAAVSDLSSHPT-ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCceeccccCCC-cCeeeecCcCCCceEEEecCC
Confidence 666677777621 67777777 68889999653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=269.66 Aligned_cols=297 Identities=18% Similarity=0.285 Sum_probs=254.7
Q ss_pred ceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 50 LHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
+.+..+.||+..|+++.|.| .+.+|++++.|+.|+||++-....+.+++.+|..+|..++|+++|..+++++.|. +
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~---~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR---F 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce---e
Confidence 44667899999999999999 8999999999999999999985557889999999999999999999999999998 6
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
+++|+.++|+++..|. -...++|+.|+|+++.++++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 7888888999998887 456789999999997799999999999999999999999999999999999999999999999
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
+.|++++||+.+.+..+...... +.....++..+|++++++.-+.|+.+.++.+. ..-.+
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~----~~~r~-------------- 420 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV----PPFRL-------------- 420 (503)
T ss_pred ccCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecc----ccccc--------------
Confidence 99999999999988887766433 33455688999999999999999999999871 11000
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
.....+.+|. ++
T Consensus 421 -----------------------------nkkK~feGh~----------------va----------------------- 432 (503)
T KOG0282|consen 421 -----------------------------NKKKRFEGHS----------------VA----------------------- 432 (503)
T ss_pred -----------------------------CHhhhhccee----------------cc-----------------------
Confidence 0001122221 11
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 433 -------------------------------------------------------------------------------- 432 (503)
T KOG0282|consen 433 -------------------------------------------------------------------------------- 432 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEe
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWD 522 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd 522 (612)
+-...+.|||||++|++|+.||.+.+||..+-++ ...+++|++++..+.|+| ....+|+++.||.|++||
T Consensus 433 --Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl--~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 433 --GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL--VSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --CceeeEEEcCCCCeEEeecCCccEEEeechhhhh--hhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 1234588999999999999999999999998887 788999999999999999 456899999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=257.04 Aligned_cols=275 Identities=20% Similarity=0.303 Sum_probs=240.7
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
....|.|+.+. ...+++|..|++|+|||..+.+ ....+.+|.+.|.|+.|. .+.+++++.+. ++++|+|+++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-c~~~L~GHtGSVLCLqyd--~rviisGSSDs---TvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-CLKILTGHTGSVLCLQYD--ERVIVSGSSDS---TVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH-HHHhhhcCCCcEEeeecc--ceEEEecCCCc---eEEEEeccCC
Confidence 56789999884 4479999999999999999988 455899999999999984 56888888888 6899999999
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee---eecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF---KLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
+++.++-+|.+.|..+.|+.. ++++++.|.++.+||+..... ...+.||...|+.+.|+ .+++++++.|.+|
T Consensus 268 e~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 999999999999999999976 799999999999999876543 34578999999999997 5699999999999
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
++|++.+++.+..+ .+|...|-++.+ .++++++|+.|.+|++||+ +.|.++
T Consensus 343 kvW~~st~efvRtl---~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi----~~G~cL-------------------- 393 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTL---NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI----ECGACL-------------------- 393 (499)
T ss_pred EEEeccceeeehhh---hcccccceehhc--cCeEEEecCCCceEEEEec----cccHHH--------------------
Confidence 99999999999999 599999999888 4899999999999999999 666554
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee---------e
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK---------L 365 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---------~ 365 (612)
+.+.||..-|.++.|. .+.+++|+.||.|++||+..+.... .
T Consensus 394 --------------------------RvLeGHEeLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~ 444 (499)
T KOG0281|consen 394 --------------------------RVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRT 444 (499)
T ss_pred --------------------------HHHhchHHhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHh
Confidence 5567888999999988 5899999999999999998776553 2
Q ss_pred ceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCC
Q 007229 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 366 ~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
...|.++|..+.|+.-.+++++.|.+|.+||..++...
T Consensus 445 lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 445 LVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 23388999999999999999999999999999877644
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=244.71 Aligned_cols=288 Identities=18% Similarity=0.300 Sum_probs=251.8
Q ss_pred eeeccCCceEEEEEEcC---CCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 141 GDFDGHSRRVLSCEFKP---TRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
....+|+.+|..++|+| +| |+|++++.|+.-.+-+-+++..+-++.+|.+.|.+.....+....++++.|=+.++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 34578999999999987 44 579999999999999999999999999999999999999998889999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|.-+|..+..+ .|..-|.+++|+.|.++|++|+.+..+++||+
T Consensus 87 ~a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekllrvfdl--------------------------------- 129 (334)
T KOG0278|consen 87 DAVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL--------------------------------- 129 (334)
T ss_pred hhhhhhhhhhh----hhhheeeeEEecccchhhhccchHHHhhhhhc---------------------------------
Confidence 99999999999 89999999999999999999999999999998
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
..++.+...+.+|.+.|..+.|... .+.+++.+.|++||+||.+++...+.
T Consensus 130 ----------------n~p~App~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~s------------ 180 (334)
T KOG0278|consen 130 ----------------NRPKAPPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQS------------ 180 (334)
T ss_pred ----------------cCCCCCchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEE------------
Confidence 4556667788999999999999932 57777779999999999988765443
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
+..+.+++++.
T Consensus 181 ---------------------------------------------------------------------L~~~s~VtSlE 191 (334)
T KOG0278|consen 181 ---------------------------------------------------------------------LEFNSPVTSLE 191 (334)
T ss_pred ---------------------------------------------------------------------EecCCCCccee
Confidence 33456789999
Q ss_pred EccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccc
Q 007229 458 IAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHT 537 (612)
Q Consensus 458 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 537 (612)
+++||++|.++. .+.|.+||..+-.+.....++ ..|.+..++|+...+++|++|..++.||..+++.+.....+|.
T Consensus 192 vs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~ 267 (334)
T KOG0278|consen 192 VSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHF 267 (334)
T ss_pred eccCCCEEEEec-CceeEEeccccccceeeccCc---cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCC
Confidence 999999877654 467999999887763333333 3688999999999999999999999999999998855458899
Q ss_pred cceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 538 ARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 538 ~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++|.|+.|+|||..-|+|+.||+|+||....
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 9999999999999999999999999999876
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=268.93 Aligned_cols=287 Identities=27% Similarity=0.514 Sum_probs=248.3
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
+.+.+|..+|++++|+|++++|++++.||.|++|++.+++ ....+..|...+..+.|+|+++++++++.++ .+.+|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~ 78 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-LLRTLKGHTGPVRDVAASADGTYLASGSSDK---TIRLW 78 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-cEEEEecCCcceeEEEECCCCCEEEEEcCCC---eEEEE
Confidence 4577999999999999999999999999999999999887 5557788999999999999999999999877 57788
Q ss_pred EecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC
Q 007229 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR 212 (612)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 212 (612)
+.+.++.+..+..|...+.++.|+|++. ++++++.++.+++||+.+++....+..|...+.+++|+|+++++++++.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 8888888999999999999999999977 588888899999999999998888889999999999999998888888899
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
.+++||+++++....+. .|...+.+++|+|+++.+++++.++.+++||+ ..++.+..+.
T Consensus 158 ~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~----~~~~~~~~~~-------------- 216 (289)
T cd00200 158 TIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL----STGKCLGTLR-------------- 216 (289)
T ss_pred cEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEEC----CCCceecchh--------------
Confidence 99999999888888773 67789999999999999999999999999998 3222211100
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDAR 372 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 372 (612)
.
T Consensus 217 --------------------------------~----------------------------------------------- 217 (289)
T cd00200 217 --------------------------------G----------------------------------------------- 217 (289)
T ss_pred --------------------------------h-----------------------------------------------
Confidence 0
Q ss_pred eEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccce
Q 007229 373 IKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT 452 (612)
Q Consensus 373 i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (612)
+...
T Consensus 218 ----------------------------------------------------------------------------~~~~ 221 (289)
T cd00200 218 ----------------------------------------------------------------------------HENG 221 (289)
T ss_pred ----------------------------------------------------------------------------cCCc
Confidence 1113
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
+.+++|+|++.++++++.+|.+++|++.+++. ...+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC--VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee--EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 67788999988888888899999999987765 566678889999999999999999999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=228.01 Aligned_cols=277 Identities=20% Similarity=0.283 Sum_probs=236.2
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
..+.+..|+++|.++.|+-||+|.++++.|.+|++|+...+. +.++..+|..+|..++.+.|+..++++|.+. .+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-liktYsghG~EVlD~~~s~Dnskf~s~GgDk---~v~ 84 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-LIKTYSGHGHEVLDAALSSDNSKFASCGGDK---AVQ 84 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-eeeeecCCCceeeeccccccccccccCCCCc---eEE
Confidence 456688999999999999999999999999999999999998 6779999999999999999999999999998 678
Q ss_pred EEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC--CeeeecccccccceEEEEECCCCCeEEEE
Q 007229 131 AFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP--FKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
+|+.++|+.++.+.+|.+.|..++|+.+.. .+++|+-|.++++||.++ .++++.+....+.|.++..+ +..+++|
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999999999999999999998 799999999999999765 56777788888999999987 6679999
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
+.||+++.||++.|+..... ...+|++++|++|++..+.++.|+++++.|- +++++++.+..
T Consensus 162 S~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk----~tGklL~sYkG--------- 223 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDK----ETGKLLKSYKG--------- 223 (307)
T ss_pred ccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeeccc----chhHHHHHhcc---------
Confidence 99999999999999887665 4678999999999999999999999999998 78887766554
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
|.+.-..+... ......+++|++||.+.+||+..........
T Consensus 224 -------------------------------------hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 224 -------------------------------------HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred -------------------------------------cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 43333333333 2236889999999999999999988887777
Q ss_pred ecccc-eEEEEe--eccEEEEecCC
Q 007229 368 KYDAR-IKCLAA--VEEVIFTAGFD 389 (612)
Q Consensus 368 ~~~~~-i~~~~~--~~~~l~~~~~~ 389 (612)
.+... +..+.+ ....++++...
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred cCCceeEEeeecccCccceeEecCC
Confidence 55555 677777 33445555443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=295.94 Aligned_cols=317 Identities=15% Similarity=0.164 Sum_probs=239.7
Q ss_pred CCEEEEEeCCCCceeeE-----eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECC
Q 007229 38 GRSVLIRYLDKPLHVEF-----YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP 112 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~-----~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~ 112 (612)
+|-..+|+..+...... +..|.+.|.+++|+|+|++||+|+.|+.|+|||........ ...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~----------- 523 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIH----------- 523 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccc-----------
Confidence 34566777665444332 34589999999999999999999999999999976421000 0000
Q ss_pred CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccc
Q 007229 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF 192 (612)
Q Consensus 113 ~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 192 (612)
.+...+. +...+.+++|+|.....+++++.||+|++||+.+++.+..+.+|...
T Consensus 524 -------------------------~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~ 577 (793)
T PLN00181 524 -------------------------YPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR 577 (793)
T ss_pred -------------------------cceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC
Confidence 0000111 23467888998864336999999999999999999999999999999
Q ss_pred eEEEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe-cCCCEEEEEeCCCcEEEEEeecCCCC
Q 007229 193 VNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS-PDGKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 193 v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
|.+++|+| ++.+|++|+.|+.|++||+.++..+..+ .+...+.++.|+ +++.+|++|+.||.|++||+ ..
T Consensus 578 V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~----~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~----~~ 649 (793)
T PLN00181 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI----KTKANICCVQFPSESGRSLAFGSADHKVYYYDL----RN 649 (793)
T ss_pred EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE----ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEC----CC
Confidence 99999997 7889999999999999999999988887 344679999995 47999999999999999998 32
Q ss_pred CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCC
Q 007229 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
.+ .....+.+|...|..+.|.+ +..+++++.|+
T Consensus 650 ~~---------------------------------------------~~~~~~~~h~~~V~~v~f~~--~~~lvs~s~D~ 682 (793)
T PLN00181 650 PK---------------------------------------------LPLCTMIGHSKTVSYVRFVD--SSTLVSSSTDN 682 (793)
T ss_pred CC---------------------------------------------ccceEecCCCCCEEEEEEeC--CCEEEEEECCC
Confidence 21 11234457888999999975 78999999999
Q ss_pred cEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEE
Q 007229 351 AIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVS 430 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (612)
.|++||+........
T Consensus 683 ~ikiWd~~~~~~~~~----------------------------------------------------------------- 697 (793)
T PLN00181 683 TLKLWDLSMSISGIN----------------------------------------------------------------- 697 (793)
T ss_pred EEEEEeCCCCccccC-----------------------------------------------------------------
Confidence 999999864310000
Q ss_pred eeccEEEeecccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc-----------eeeccccCceE
Q 007229 431 TESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE-----------MVLEKHRGAIT 498 (612)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~-----------~~~~~~~~~i~ 498 (612)
...+..+. |...+.+++|+|++++|++|+.|+.|++|+......... .....|...|.
T Consensus 698 ----------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 698 ----------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred ----------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 00011111 334578899999999999999999999999765432111 11234566799
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
+++|+|++..|++|+.||.|+||++
T Consensus 768 ~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=262.37 Aligned_cols=282 Identities=24% Similarity=0.409 Sum_probs=246.9
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.|++.|.+++|+|++++|++++ ++.|.+|++.+++....+.+|...+.++.|+|++++|++++.||.|++||+.+++ .
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-~ 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-C 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-c
Confidence 5778999999999999999998 8999999999988888899999999999999999999999999999999999876 4
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
...+..|...+.++.|+|+++++++++.++ .+.+|+..+++....+..|...+.+++|+|++. ++++++.|+.|++
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i 161 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDK---TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKL 161 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCC---eEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEE
Confidence 456778888999999999988888888565 467777777888999999999999999999987 5888888999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
||+.+++....+..|...+.++.|+|+++.+++++.++.+++||+.+++....+ ..|...+.+++|+|++.++++++
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---RGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch---hhcCCceEEEEEcCCCcEEEEEc
Confidence 999999888888899999999999999999999999999999999988888777 36778999999999988888888
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.+|.+++|++ ..++....+ ..|...+.++.
T Consensus 239 ~~~~i~i~~~----~~~~~~~~~----------------------------------------------~~~~~~i~~~~ 268 (289)
T cd00200 239 EDGTIRVWDL----RTGECVQTL----------------------------------------------SGHTNSVTSLA 268 (289)
T ss_pred CCCcEEEEEc----CCceeEEEc----------------------------------------------cccCCcEEEEE
Confidence 7999999998 554444332 24666788888
Q ss_pred EEecCCcEEEEEecCCcEEEEE
Q 007229 335 ALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd 356 (612)
+.+. +..+++++.||.+++|+
T Consensus 269 ~~~~-~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 269 WSPD-GKRLASGSADGTIRIWD 289 (289)
T ss_pred ECCC-CCEEEEecCCCeEEecC
Confidence 8842 68899999999999985
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=242.11 Aligned_cols=290 Identities=19% Similarity=0.288 Sum_probs=244.4
Q ss_pred CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCC---CEEEEEeCCC
Q 007229 48 KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG---LRIVACGDGK 124 (612)
Q Consensus 48 ~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~~~ 124 (612)
.++.+..+ -|...|.++... +++|++|+.||.+++||.... ......+|.++|.+++|--.. ..+++++.+.
T Consensus 95 aP~pl~~~-~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq 169 (423)
T KOG0313|consen 95 APKPLQCF-LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQ 169 (423)
T ss_pred CCCccccc-cchhhhhhhccc--CceEEEeecCCeeEEEecCCc--eEEEEecCCcceeeeEEEecCCccceEEEecCCc
Confidence 34444434 499999999988 779999999999999999876 456889999999988885443 3599999988
Q ss_pred CeeeEEEEEecCCce----eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC----------------------
Q 007229 125 GKSFVRAFMWDSGTT----VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP---------------------- 178 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~---------------------- 178 (612)
.+++|.|+.++. +..-.||...|.++...+++. ++++|+.|.++++|+.+
T Consensus 170 ---tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 170 ---TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred ---eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 689999996543 334459999999999999999 79999999999999822
Q ss_pred ---CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 179 ---PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 179 ---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
++.++.++.+|.++|.++.|++ ...+++++.|.+|+.||++++.....+ .....+.++.++|..++|++|+.
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~----~~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL----TTNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred cccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee----ecCcceeEeecccccceeeecCC
Confidence 1334556889999999999998 567999999999999999999999988 67788999999999999999999
Q ss_pred CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEE
Q 007229 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTA 335 (612)
Q Consensus 256 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (612)
|..+++||. +++ ........+.+|.+.|.++.+
T Consensus 321 dr~irl~DP----R~~-------------------------------------------~gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 321 DRHIRLWDP----RTG-------------------------------------------DGSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred CCceeecCC----CCC-------------------------------------------CCceeEEeeecchhhhhheec
Confidence 999999998 322 112223567889999999999
Q ss_pred EecCCcEEEEEecCCcEEEEEcCCce-eeeeceecccceEEEEe-eccEEEEecCCCeEEEEecC
Q 007229 336 LKISQQTILSSSYDGAIIKWIRGVGY-SSKLEKKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 336 ~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~ 398 (612)
++.+..+|++++.|+++++||+++.+ +......|...|.++.+ .+..+++|+.|.+++++.-.
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 98779999999999999999999988 66666669999999999 66799999999999998643
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=232.59 Aligned_cols=290 Identities=16% Similarity=0.289 Sum_probs=248.6
Q ss_pred eeEeccCCCceEEEEECC---CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 52 VEFYGEHGYPVTVARYSP---NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~---d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
..+..||+.+|..++||| +|-+|++++.|+.-.+-+=+++. -..++.+|++.|.+.....+..+-++++.+-.
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-wigtfeghkgavw~~~l~~na~~aasaaadft--- 82 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-WIGTFEGHKGAVWSATLNKNATRAASAAADFT--- 82 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-cEEeeeccCcceeeeecCchhhhhhhhcccch---
Confidence 445789999999999997 89999999999999988888888 55699999999999999999888888887763
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-eeecccccccceEEEEECCCCCeEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
-.+|+.-+|..++.|. |...|.+++|+.|.++ |++|+.+..+|+||++..+ +...+.+|.+.|..+.|....+.+++
T Consensus 83 akvw~a~tgdelhsf~-hkhivk~~af~~ds~~-lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNY-LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhheeeeEEecccchh-hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 3566666999999887 8899999999999995 9999999999999988755 44568899999999999999999999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
.+.|++||+||.+++..++.+ ....+|+++.++++|++|.++ ..+.|.+||. .+..+++.+..
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL----~~~s~VtSlEvs~dG~ilTia-~gssV~Fwda----ksf~~lKs~k~-------- 223 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSL----EFNSPVTSLEVSQDGRILTIA-YGSSVKFWDA----KSFGLLKSYKM-------- 223 (334)
T ss_pred eccCCceEEEEeccCcEEEEE----ecCCCCcceeeccCCCEEEEe-cCceeEEecc----ccccceeeccC--------
Confidence 999999999999999999999 678899999999999866655 5678999998 44444433221
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (334)
T KOG0278|consen 224 -------------------------------------------------------------------------------- 223 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee
Q 007229 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI 447 (612)
Q Consensus 368 ~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (334)
T KOG0278|consen 224 -------------------------------------------------------------------------------- 223 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee-eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc
Q 007229 448 DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV-LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 448 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 526 (612)
+..|.+..++|+...+++|++|..++.||..++.- +.. ..+|-++|.|+.|+|||...|+|++||+|++|....+
T Consensus 224 --P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 224 --PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred --ccccccccccCCCceEEecCcceEEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 12366778889989999999999999999999876 333 4889999999999999999999999999999998766
Q ss_pred ce
Q 007229 527 EV 528 (612)
Q Consensus 527 ~~ 528 (612)
+.
T Consensus 300 ~~ 301 (334)
T KOG0278|consen 300 KT 301 (334)
T ss_pred Cc
Confidence 54
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=243.97 Aligned_cols=288 Identities=20% Similarity=0.302 Sum_probs=248.0
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee--------ccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 100 VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF--------DGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 100 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
+.+..+.|..|||||++|++++-++ ++.+|++-+|+....+ --+..+|.|+.|+.|.. ++++|+.||.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDG---FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDG---FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCCCCceEeeccccc---eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCc
Confidence 4556788999999999999999999 8899999988865544 34778999999999998 7999999999
Q ss_pred EEEEeCCCCeeeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 172 VNFYEGPPFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
|++|.+++|.+++.+. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++.++ .+|...|+...|.+||.++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf---rGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF---RGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh---cCccccccceEEcCCCCeE
Confidence 9999999999999986 89999999999999999999999999999999999999999 5999999999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
++++.||+|++|+. .+.+++.+|.... ...+|
T Consensus 364 isaSsDgtvkvW~~----KtteC~~Tfk~~~--------------------------------------------~d~~v 395 (508)
T KOG0275|consen 364 ISASSDGTVKVWHG----KTTECLSTFKPLG--------------------------------------------TDYPV 395 (508)
T ss_pred EEecCCccEEEecC----cchhhhhhccCCC--------------------------------------------Ccccc
Confidence 99999999999999 8899888876543 34456
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
..+...+.+...++.+...+++.+.++...-...... +.
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsS--------------------------------Gk--------- 434 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSS--------------------------------GK--------- 434 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeecc--------------------------------CC---------
Confidence 6666666667888888888888888775432211100 00
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL 490 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 490 (612)
...+...+.++||.|.++.+.++|+.++.+...++++ ...+
T Consensus 435 -------------------------------------REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L--E~tl 475 (508)
T KOG0275|consen 435 -------------------------------------REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL--ERTL 475 (508)
T ss_pred -------------------------------------ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce--eeee
Confidence 0123456788999999999999999999999999998 7888
Q ss_pred ccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 491 EKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
.-|...+..++-+|..+.||+-++||.+++|.
T Consensus 476 ~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 476 PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecccccccccccCcccchhhhhcccchhhhcC
Confidence 88999999999999999999999999999995
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=228.26 Aligned_cols=282 Identities=21% Similarity=0.326 Sum_probs=232.5
Q ss_pred EEEEECCC-CCeEEEEE-------cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEe
Q 007229 194 NCIRFSPD-GSKLISVS-------SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~-~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~ 264 (612)
.++.|||- .++|+.+. ..|++.|.++..++-+.+.... .-...+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 56789982 23444432 2688999998766666555332 45678999999984 457888899999999997
Q ss_pred ecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 265 LEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
..+..++..++.|...|.++.+....+..++
T Consensus 91 -------------------------------------------------~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 91 -------------------------------------------------TMPSKPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred -------------------------------------------------CCCCcchhHHHhhhhheEEeccccccceeEE
Confidence 3445567788899999999999966688999
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (612)
+++.|++|++|+...+..+....+
T Consensus 122 tsSWD~TiKLW~~~r~~Sv~Tf~g-------------------------------------------------------- 145 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPNSVQTFNG-------------------------------------------------------- 145 (311)
T ss_pred eeccCCceEeecCCCCcceEeecC--------------------------------------------------------
Confidence 999999999999876655443321
Q ss_pred cEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEc
Q 007229 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s 503 (612)
++..|...+|+| ..+++++++.|+.+++||++.... ...++.|...|.++.|+
T Consensus 146 ------------------------h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 146 ------------------------HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWS 199 (311)
T ss_pred ------------------------CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc--eeEEEeccceeEeeccc
Confidence 344678889999 678999999999999999976543 34588999999999999
Q ss_pred C-CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCC-cEEEEeecCcEEEEEEccCCCcceeeeecccc
Q 007229 504 P-DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS-TMVATGSIDTCVIIYEIGKPASSRITIKNAHL 581 (612)
Q Consensus 504 ~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~ 581 (612)
. +...|++|+.|+.|+.||+++.+.....+.+|.-.|..+.|||.. ..||+++.|-+++|||...+. .++.+...|+
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~Ht 278 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-SAIETVDHHT 278 (311)
T ss_pred ccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-hhhhhhhccc
Confidence 8 778999999999999999999887767789999999999999954 589999999999999999755 7888888999
Q ss_pred cCeeeEEEe--cCceEEEccCCCeEEEEE
Q 007229 582 GGVYGVAFM--DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 582 ~~v~~~~~~--~~~~l~s~~~d~~i~~w~ 608 (612)
.-|..+.|+ +..++++++-|+.++||+
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEeccccccccCceeeecccccceeeec
Confidence 999999999 889999999999999998
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=237.20 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=235.4
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCC---CEEEEeeCcCeEEEeecCCCc
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG---EWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~---~~las~~~d~~i~iwd~~~~~ 92 (612)
|...|.++... +++|++++ ||.+++||.+ |+....+.||.++|.+++|--.. ..+++++.|.++++|.++.++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 66677888777 78899998 9999999977 57778899999999988875533 359999999999999998776
Q ss_pred e---eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-------------------------CCceeeeec
Q 007229 93 V---LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-------------------------SGTTVGDFD 144 (612)
Q Consensus 93 ~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-------------------------~~~~~~~~~ 144 (612)
. ....-.+|...|.++...++|..+++++-|. .+.+|... ++.++-.+.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~---~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT---MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccc---eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 4 2223349999999999999999999999998 57777721 112566789
Q ss_pred cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe
Q 007229 145 GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
+|.++|.++.|++.+ .+.+++.|.+|+.||+.++..+.++.+ ...+.++..+|..++|++|+.|..+++||.+++.-
T Consensus 258 GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 258 GHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 999999999999955 699999999999999999999888764 45699999999999999999999999999998754
Q ss_pred eeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS 303 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
-..-....+|...|.++.|+|. ...|++++.|+++++||+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv--------------------------------------- 375 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV--------------------------------------- 375 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe---------------------------------------
Confidence 3332223599999999999994 556889999999999999
Q ss_pred cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 304 LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
+....++..+.+|...|.++.|.. +..+++|+.|..|+++.-
T Consensus 376 ----------RS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 376 ----------RSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ----------ccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 444455677788999999999997 789999999999999854
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=239.32 Aligned_cols=287 Identities=22% Similarity=0.361 Sum_probs=251.6
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee--------eeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN--------EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
+....+.|..|||||+||++|+.||.|.+||..+++ +.+ .+--+...|.|+.||.|...|++++.++ .
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GK-lrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG---k 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGK-LRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG---K 286 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccch-hhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC---c
Confidence 456678899999999999999999999999999987 333 3335677999999999999999999998 5
Q ss_pred EEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE
Q 007229 129 VRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
|.+|...+|.+++.|. .|+..|+++.|+.|+. .+++++.|.++++.-+++|++++.++||+..|+...|++||.++++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 7899999999999997 8999999999999998 5999999999999999999999999999999999999999999999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
++.||+|++|+..+.+++.++... +...+|.++-..| +...++++...+++.+.++ .++.+++|........+
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-----qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-----QGQVVRSFSSGKREGGD 439 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEec-----cceEEeeeccCCccCCc
Confidence 999999999999999999999654 6777899988888 5668888889999999997 89999999887766555
Q ss_pred eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 287 DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
-....+...++.+++.++|+.++.|.... +.....+..|...+..++-++ ..+.+++-++||.+++|.
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~s-G~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLS-GKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeec-CceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 55555555699999999999999999554 555677888999888887763 278899999999999994
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=282.82 Aligned_cols=294 Identities=17% Similarity=0.175 Sum_probs=236.1
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC----c----eeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEE
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP----L----HVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVR 84 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~----~----~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~ 84 (612)
..|.+.|++++|+|+|++||+++ ++.|+||+..+. . ....+. +...|.+++|+| ++.+||+++.||+|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 34788999999999999999998 899999997642 1 122233 456899999987 578999999999999
Q ss_pred EeecCCCceeeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC-CCCEE
Q 007229 85 IWGTHNGFVLKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFR 162 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 162 (612)
+||+.+++ ....+.+|...|.+++|+| ++.+|++++.++ .+++|+..++..+..+..+ ..+.++.|++ ++. .
T Consensus 559 lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg---~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~-~ 632 (793)
T PLN00181 559 VWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDG---SVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR-S 632 (793)
T ss_pred EEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC---EEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC-E
Confidence 99999887 5557889999999999997 789999999988 6788888888888888755 6799999965 566 6
Q ss_pred EEEeecCCeEEEEeCCCCe-eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC------CeeeeeeccCCcc
Q 007229 163 IATCGEDFLVNFYEGPPFK-FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG------EKIGEFSSEDGHH 235 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~ 235 (612)
+++|+.||.|++||+++.+ ....+.+|...|.++.|. ++.+|++++.|++|++||+..+ ..+..+ .+|.
T Consensus 633 latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~---~gh~ 708 (793)
T PLN00181 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF---MGHT 708 (793)
T ss_pred EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE---cCCC
Confidence 9999999999999998765 456678999999999997 6789999999999999999753 345555 4889
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
..+..++|+|++++|++++.|+.+++|+. .....+..+......
T Consensus 709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~----~~~~~~~s~~~~~~~-------------------------------- 752 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGSETNEVFVYHK----AFPMPVLSYKFKTID-------------------------------- 752 (793)
T ss_pred CCeeEEEEcCCCCEEEEEeCCCEEEEEEC----CCCCceEEEecccCC--------------------------------
Confidence 99999999999999999999999999998 444433332211100
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
.........+...|.+++|++ ++..+++|+.+|.|++|++
T Consensus 753 -~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 753 -PVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred -cccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 000011234667899999983 2789999999999999986
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=219.95 Aligned_cols=294 Identities=21% Similarity=0.282 Sum_probs=235.9
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
.+++|..+++.+.++.+|. +|.+|+.|.++.+|-..+|+.+-++.+|.+.|.|++..-+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 3678999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-----CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-----KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+++..+ ....+|..+.|+++|++++....+ +.|.++|++++..+.
T Consensus 84 Gk~la~~----k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~------------------------- 134 (327)
T KOG0643|consen 84 GKQLATW----KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI------------------------- 134 (327)
T ss_pred CcEEEEe----ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh-------------------------
Confidence 9999999 678899999999999987766543 345555551100000
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
... ..++
T Consensus 135 ----------------------------~s~------------ep~~--------------------------------- 141 (327)
T KOG0643|consen 135 ----------------------------DSE------------EPYL--------------------------------- 141 (327)
T ss_pred ----------------------------ccc------------CceE---------------------------------
Confidence 000 0000
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
....+...++.+
T Consensus 142 --------------------------------------------------------------------kI~t~~skit~a 153 (327)
T KOG0643|consen 142 --------------------------------------------------------------------KIPTPDSKITSA 153 (327)
T ss_pred --------------------------------------------------------------------EecCCccceeee
Confidence 000122357888
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccc
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFH 536 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 536 (612)
-|+|-+++|++|.+||.|.+||+.++.. .....+.|+..|+.|+++||..++++++.|.+-++||..+-+.+ +.+. .
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~-Kty~-t 230 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL-KTYT-T 230 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcceEEecccCccceeeeccceeeE-EEee-e
Confidence 8999999999999999999999998753 24556779999999999999999999999999999999999987 4454 5
Q ss_pred ccceeEEEecCCCcEEEEeecCcE--E------------EEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCC
Q 007229 537 TARINCLAWSPSSTMVATGSIDTC--V------------IIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGED 601 (612)
Q Consensus 537 ~~~i~~~~~s~~~~~l~s~~~d~~--i------------~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d 601 (612)
..||++.+++|-..+++.|+.-.. | ++|++-. . +.+...++|-++|.+++|+ +|+...||++|
T Consensus 231 e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-e-EEigrvkGHFGPINsvAfhPdGksYsSGGED 308 (327)
T KOG0643|consen 231 ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-E-EEIGRVKGHFGPINSVAFHPDGKSYSSGGED 308 (327)
T ss_pred cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH-H-HHhccccccccCcceeEECCCCcccccCCCC
Confidence 789999999997777776653221 1 1222211 1 4566788999999999999 88999999999
Q ss_pred CeEEEEEecc
Q 007229 602 ACIRVWRLAT 611 (612)
Q Consensus 602 ~~i~~w~~~~ 611 (612)
|.||+.-.+.
T Consensus 309 G~VR~h~Fd~ 318 (327)
T KOG0643|consen 309 GYVRLHHFDS 318 (327)
T ss_pred ceEEEEEecc
Confidence 9999987653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=218.41 Aligned_cols=277 Identities=16% Similarity=0.215 Sum_probs=227.2
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec--ccccccceEEEEECC-CCCeEEEEEcCCcEEEE
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS--HREHSNFVNCIRFSP-DGSKLISVSSDRKGLIY 217 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw 217 (612)
+.+++|...+.+++|+.+|. .+++|+.|+++.+|++...+.... .++|.+.|..++|+| ...++++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 55778999999999999999 599999999999999988766554 568999999999998 45689999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|.+.+++...+ .....-..+.|+|+|++++.++.|..|.+.|. .+.+.+...+.
T Consensus 93 d~r~~k~~~~i----~~~~eni~i~wsp~g~~~~~~~kdD~it~id~----r~~~~~~~~~~------------------ 146 (313)
T KOG1407|consen 93 DIRSGKCTARI----ETKGENINITWSPDGEYIAVGNKDDRITFIDA----RTYKIVNEEQF------------------ 146 (313)
T ss_pred EeccCcEEEEe----eccCcceEEEEcCCCCEEEEecCcccEEEEEe----cccceeehhcc------------------
Confidence 99999999998 45555567899999999999999999999998 55555544332
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
...+..+.|. .++++++.....|+|.|.....-+++.....
T Consensus 147 -----------------------------~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~A--------- 187 (313)
T KOG1407|consen 147 -----------------------------KFEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKA--------- 187 (313)
T ss_pred -----------------------------cceeeeeeec-CCCCEEEEecCCceEEEEecccccccccccc---------
Confidence 2244556666 2266666666678887775543333222221
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
|+....|+.
T Consensus 188 -----------------------------------------------------------------------H~snCicI~ 196 (313)
T KOG1407|consen 188 -----------------------------------------------------------------------HPSNCICIE 196 (313)
T ss_pred -----------------------------------------------------------------------CCcceEEEE
Confidence 445577899
Q ss_pred EccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccc
Q 007229 458 IAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHT 537 (612)
Q Consensus 458 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 537 (612)
|+|+|+++|+|+.|..+.+||++.. .+.+.+..+.-+|+.+.||.||++||+|++|..|-|=++++|..+.+ .. +.
T Consensus 197 f~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-I~-~~ 272 (313)
T KOG1407|consen 197 FDPDGRYFATGSADALVSLWDVDEL--ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-IP-CE 272 (313)
T ss_pred ECCCCceEeeccccceeeccChhHh--hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE-ee-cc
Confidence 9999999999999999999999855 44888999999999999999999999999999999999999998754 33 78
Q ss_pred cceeEEEecCCCcEEEEeecC
Q 007229 538 ARINCLAWSPSSTMVATGSID 558 (612)
Q Consensus 538 ~~i~~~~~s~~~~~l~s~~~d 558 (612)
++...++|+|...+||-++.|
T Consensus 273 ~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 273 GPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CCceeEEecCCCceeeEEecC
Confidence 999999999999999988765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=257.88 Aligned_cols=262 Identities=19% Similarity=0.237 Sum_probs=193.9
Q ss_pred eeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEE-------------ECC---CC
Q 007229 52 VEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ-------------WSP---DG 114 (612)
Q Consensus 52 ~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~-------------~s~---~~ 114 (612)
.+.+. +|.+.|.++.||+||+|||+|+.||.|+||.+...+. ...+.+.-.++- -++ .+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~----~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER----MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch----hcccccccchhhhhhhhccccCccccccccccc
Confidence 33455 8999999999999999999999999999999987542 111111111111 111 00
Q ss_pred CEEEE--EeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc
Q 007229 115 LRIVA--CGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN 191 (612)
Q Consensus 115 ~~l~~--~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 191 (612)
+.... +...... .+-....- ..++++.|.||.+.|..+.|+.++ +|++++.|.+||+|++....++..+. |.+
T Consensus 335 ~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccc-cCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 11110 0011100 00000111 467888999999999999999987 69999999999999999999999885 999
Q ss_pred ceEEEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC
Q 007229 192 FVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 192 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
-|+|++|+| |.+|+++|+-||.++||++...+...-. ....-|++++|.|||++.++|+.+|.+++|+. ..
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~----Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t----~~ 482 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN----DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT----EG 482 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh----hhhhhheeEEeccCCceEEEEEeccEEEEEEc----cC
Confidence 999999999 7889999999999999999888777666 55688999999999999999999999999999 66
Q ss_pred CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCC
Q 007229 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
.++...+..... .. +.. .|. .|+.+.|.+.+...+++.+.|.
T Consensus 483 lk~~~~~~I~~~--------------------------------~~----Kk~-~~~-rITG~Q~~p~~~~~vLVTSnDS 524 (712)
T KOG0283|consen 483 LKLVSDFHIRLH--------------------------------NK----KKK-QGK-RITGLQFFPGDPDEVLVTSNDS 524 (712)
T ss_pred CeEEEeeeEeec--------------------------------cC----ccc-cCc-eeeeeEecCCCCCeEEEecCCC
Confidence 666665544321 00 111 133 8999999965566788889999
Q ss_pred cEEEEEcCCceeeeece
Q 007229 351 AIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~ 367 (612)
.|+|+|.+....+..+.
T Consensus 525 rIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 525 RIRIYDGRDKDLVHKFK 541 (712)
T ss_pred ceEEEeccchhhhhhhc
Confidence 99999987665554443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=216.89 Aligned_cols=302 Identities=16% Similarity=0.174 Sum_probs=244.6
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~ 92 (612)
.++|.-.++.+.|+.+|.+|.+++ |....||-..+|+.+-++.||++.|.|++.+.+.+.|++|+.|.++++||+++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 346777899999999999999999 8999999999999999999999999999999999999999999999999999998
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC--eeeEEEEEec-------CCceeeeeccCCceEEEEEEcCCCCEEE
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG--KSFVRAFMWD-------SGTTVGDFDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~--~~~i~i~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l 163 (612)
++. .......|..+.|+++|.+++.+.++.- ...+.+++.. ..++...+..+...++.+-|.|-+++ +
T Consensus 86 ~la--~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~-i 162 (327)
T KOG0643|consen 86 QLA--TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET-I 162 (327)
T ss_pred EEE--EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE-E
Confidence 653 2345678999999999999988876532 2245555555 45678889999999999999999994 9
Q ss_pred EEeecCCeEEEEeCCCC-eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 164 ATCGEDFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
++|.+||.|..||++++ +.+...+.|+..|+.|.++||..++++++.|.+.++||..+-+.+.++ ....|+++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty----~te~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY----TTERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe----eeccccccee
Confidence 99999999999999997 455557889999999999999999999999999999999999999999 6788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
++|...+++.++.....-+=.. ......|.. ++|++ -.+..+..
T Consensus 239 isP~~d~VilgGGqeA~dVTTT------~~r~GKFEA-----------------------------rFyh~-i~eEEigr 282 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTT------STRAGKFEA-----------------------------RFYHL-IFEEEIGR 282 (327)
T ss_pred cccccceEEecCCceeeeeeee------cccccchhh-----------------------------hHHHH-HHHHHhcc
Confidence 9998877777764322222111 110111110 01110 01223456
Q ss_pred ecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
.++|-++|+++++++. ++..++|++||.|++...+.
T Consensus 283 vkGHFGPINsvAfhPd-GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 283 VKGHFGPINSVAFHPD-GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccccccCcceeEECCC-CcccccCCCCceEEEEEecc
Confidence 7899999999999942 88999999999999986544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=218.07 Aligned_cols=275 Identities=18% Similarity=0.250 Sum_probs=220.7
Q ss_pred cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-Ceee-ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC
Q 007229 145 GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFK-LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG 222 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 222 (612)
...+.|.+++|||...++++.++.|++||+|+++. +... +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 45678999999996666788999999999999887 3333 336679999999999999999999999999999999999
Q ss_pred CeeeeeeccCCccccEEEEEEecCCC--EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEE
Q 007229 223 EKIGEFSSEDGHHGSIYAVSWSPDGK--KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300 (612)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (612)
+....- .|.++|..+.|-+... .|++|+-|++|++||. +...++.+++.+.
T Consensus 105 Q~~~v~----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~----R~~~pv~t~~LPe------------------- 157 (347)
T KOG0647|consen 105 QVSQVA----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT----RSSNPVATLQLPE------------------- 157 (347)
T ss_pred Ceeeee----ecccceeEEEEecCCCcceeEecccccceeeccc----CCCCeeeeeeccc-------------------
Confidence 777666 8999999999998655 8999999999999999 7777777766553
Q ss_pred EEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeec
Q 007229 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVE 380 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 380 (612)
.+.++... ..+++.+..+..|.+|+++++.......
T Consensus 158 ----------------------------RvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~------------- 193 (347)
T KOG0647|consen 158 ----------------------------RVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRI------------- 193 (347)
T ss_pred ----------------------------eeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhh-------------
Confidence 12222111 5677777788888888876554322110
Q ss_pred cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 460 (612)
+-+.+..+.|++..+
T Consensus 194 -----------------------------------------------------------------~SpLk~Q~R~va~f~ 208 (347)
T KOG0647|consen 194 -----------------------------------------------------------------ESPLKWQTRCVACFQ 208 (347)
T ss_pred -----------------------------------------------------------------cCcccceeeEEEEEe
Confidence 111345688999999
Q ss_pred CCCeEEEEecCCeEEEEEccCcccccceeeccccC---------ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---------AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
|....|.|+-+|.+.|..++.+.......++.|.. .|++++|+|.-..|++++.||++.+||-.....+ +
T Consensus 209 d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL-k 287 (347)
T KOG0647|consen 209 DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL-K 287 (347)
T ss_pred cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh-h
Confidence 99888999999999999998764444667777763 4788999999999999999999999998887776 4
Q ss_pred cccccccceeEEEecCCCcEEEEee
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
....|..+|++.+|+.+|.++|-+.
T Consensus 288 ~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 288 TSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccCcCCCccceeEecCCCCEEEEEe
Confidence 5566999999999999999988653
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=221.96 Aligned_cols=294 Identities=19% Similarity=0.369 Sum_probs=242.8
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC-----------------CceeeeeeeecCCCeEEEEECCCCC
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN-----------------GFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..+..|..++.+.+|||||.++|+|+.|..|+|.|++. +.++.+++..|..+|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45778999999999999999999999999999999871 1125567778999999999999999
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeee--ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec---ccccc
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDF--DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS---HREHS 190 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~ 190 (612)
.|++++.|+ .++++++......+.+ -....+|.++.|+|.|.+ ++.|..-.++++||+.+.++... -..|.
T Consensus 186 ILiS~srD~---tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 186 ILISGSRDN---TVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred eEEeccCCC---eEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999998 5677877743333222 335679999999999995 99999999999999999887655 34689
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc-ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH-GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
+.|+++.+++.+++.++++.||.|++||--+++++.++. +.|. ..|.+..|..+++++++.+.|..+++|.+ .
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi----~ 335 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI----S 335 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH--hhcCCceeeeEEEccCCeEEeecCCcceeeeeee----c
Confidence 999999999999999999999999999999999999984 3454 57899999999999999999999999999 9
Q ss_pred CCeeEeeeeccCccccceeeeeeecc--CCEEEEEE-cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEE
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVS-LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 346 (612)
+++++..+................|+ .++++.-. ..+.+.-||.++..+....-.+|++.+..+.-++. +..+.++
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~-~p~FmTc 414 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV-EPAFMTC 414 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC-CCceeee
Confidence 99999998876543333333333444 44444433 35789999988888877778899999998877732 7889999
Q ss_pred ecCCcEEEEEc
Q 007229 347 SYDGAIIKWIR 357 (612)
Q Consensus 347 ~~dg~i~~wd~ 357 (612)
+.|-..++|-.
T Consensus 415 sdD~raRFWyr 425 (430)
T KOG0640|consen 415 SDDFRARFWYR 425 (430)
T ss_pred cccceeeeeee
Confidence 99999999954
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=234.25 Aligned_cols=282 Identities=20% Similarity=0.301 Sum_probs=233.6
Q ss_pred CCCceEEEEECCCCCE-EEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC
Q 007229 58 HGYPVTVARYSPNGEW-IASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS 136 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~-las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~ 136 (612)
....|++++|||...+ +|+.+ .-.+.||+..+.. ..+.+...+..+.++.|-.||+.|++|...+ .++|++..+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~-~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG---~V~vfD~k~ 99 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRS-VRKTFSRFKDVVYSVDFRSDGRLLAAGDESG---HVKVFDMKS 99 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhh-hhhhHHhhccceeEEEeecCCeEEEccCCcC---cEEEecccc
Confidence 3468999999995432 34333 3479999999887 5556778889999999999999999888877 578888667
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCC-CCeEEEEEcCCcEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGL 215 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~ 215 (612)
...++.+.+|+.+|..+.|+|+++.++++|+.|+.+++||+.+...+..+.+|++.|.|.+|+|. +..+++|+.||.|+
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 77889999999999999999999989999999999999999999987789999999999999995 45889999999999
Q ss_pred EEecCCC-CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 216 IYDGKSG-EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 216 vwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
+||++.. ..+.++ .|..+|..+.+.|.|..+++++. ..+++||+ .++..
T Consensus 180 l~DtR~~~~~v~el----nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl----~~G~q--------------------- 229 (487)
T KOG0310|consen 180 LWDTRSLTSRVVEL----NHGCPVESVLALPSGSLIASAGG-NSVKVWDL----TTGGQ--------------------- 229 (487)
T ss_pred EEEeccCCceeEEe----cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEe----cCCce---------------------
Confidence 9999987 777777 89999999999999999998875 48999999 43322
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
.+.....|...|+++.+.. ++..|++++-|+.+++||+.+-+...
T Consensus 230 ------------------------ll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~---------- 274 (487)
T KOG0310|consen 230 ------------------------LLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVH---------- 274 (487)
T ss_pred ------------------------ehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEE----------
Confidence 2233344999999999993 17999999999999999866543322
Q ss_pred EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEE
Q 007229 375 CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVT 454 (612)
Q Consensus 375 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 454 (612)
.+..+++|.
T Consensus 275 -----------------------------------------------------------------------s~~~~~pvL 283 (487)
T KOG0310|consen 275 -----------------------------------------------------------------------SWKYPGPVL 283 (487)
T ss_pred -----------------------------------------------------------------------eeeccccee
Confidence 222345799
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEcc
Q 007229 455 ACAIAPDGSEAIVGGQNGKLHIYSIS 480 (612)
Q Consensus 455 ~~~~s~~~~~l~~~~~dg~v~i~d~~ 480 (612)
+++++|+++.+++|..||.+.+-+..
T Consensus 284 siavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 284 SIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEecCCCceEEEecccceeeeehhh
Confidence 99999999999999999988877543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=258.84 Aligned_cols=305 Identities=22% Similarity=0.336 Sum_probs=229.5
Q ss_pred cCCCceEEEEECCCCCEEEEee--CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 57 EHGYPVTVARYSPNGEWIASAD--VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
.++..|.+++.+|||..+|||+ .||.++||+.+.--... ..++.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------------------------------~~~~~ 56 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------------------------------EEKNE 56 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------------------------------hhhhc
Confidence 3466799999999999999999 89999999876421000 00000
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC------------------CCeeeecccccccceEEE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP------------------PFKFKLSHREHSNFVNCI 196 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~v~~~ 196 (612)
+..+.+.....|.+.|.|+.|+|||+| ||+|++|+.|.+|+.. ..+....+.+|...|..+
T Consensus 57 ~l~k~l~~m~~h~~sv~CVR~S~dG~~-lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv 135 (942)
T KOG0973|consen 57 NLPKHLCTMDDHDGSVNCVRFSPDGSY-LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV 135 (942)
T ss_pred ccchhheeeccccCceeEEEECCCCCe-EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee
Confidence 112333344445555556666666553 5666666555555533 345667788999999999
Q ss_pred EECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEee
Q 007229 197 RFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 197 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 276 (612)
+|+|++.+|++++.|++|.+||..+.+.+..+ .+|.+.|..+.|.|-|+||++-+.|++|++|+. .+....+.
T Consensus 136 ~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl---~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt----~dw~i~k~ 208 (942)
T KOG0973|consen 136 NWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL---RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT----SDWGIEKS 208 (942)
T ss_pred ccCCCccEEEEecccceEEEEccccceeeeee---ecccccccceEECCccCeeeeecCCceEEEEEc----ccceeeEe
Confidence 99999999999999999999999999888888 599999999999999999999999999999997 33333322
Q ss_pred eeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
+..+. +
T Consensus 209 It~pf----------------------------------------------------------~---------------- 214 (942)
T KOG0973|consen 209 ITKPF----------------------------------------------------------E---------------- 214 (942)
T ss_pred eccch----------------------------------------------------------h----------------
Confidence 22110 0
Q ss_pred cCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEE
Q 007229 357 RGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436 (612)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (612)
T Consensus 215 -------------------------------------------------------------------------------- 214 (942)
T KOG0973|consen 215 -------------------------------------------------------------------------------- 214 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccceeeecccceEEEEEEccCCCeEEEEec----CCeEEEEEccCcccccceeeccccCceEEEEEcCC-----Cc
Q 007229 437 LLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ----NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD-----VS 507 (612)
Q Consensus 437 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~ 507 (612)
+.........+.|||||++|++... -..+.|.+-.+.+. ...+-+|.+++.++.|+|. .+
T Consensus 215 ---------~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 215 ---------ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred ---------hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee--eeeeecCCCceEEEEeChHHhccccc
Confidence 0000113566889999999998642 23688888766655 6788999999999999981 12
Q ss_pred ------------EEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 508 ------------MFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 508 ------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.+|+|+.|++|.||.....++++....-....|..++|+|||..|+.+|.||+|.+..++.
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 6899999999999999888877555555578899999999999999999999999999876
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=220.16 Aligned_cols=299 Identities=16% Similarity=0.192 Sum_probs=239.0
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-----------------C-eeeecccccccceEEEEECCCC
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-----------------F-KFKLSHREHSNFVNCIRFSPDG 202 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----------------~-~~~~~~~~~~~~v~~~~~s~~~ 202 (612)
..+..|..++.+.+|+|||. ++++|+.|..|++.|++. + -.++++-.|.++|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 44677999999999999999 699999999999999761 1 2355677899999999999999
Q ss_pred CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 203 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
..|++++.|++|++||.........+... ....+|.++.|+|.|.+|++|..-..+++||+ .+.++...-..
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv----~T~QcfvsanP--- 256 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDV----NTYQCFVSANP--- 256 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEec----cceeEeeecCc---
Confidence 99999999999999998765444333222 55678999999999999999999999999999 66665443221
Q ss_pred cccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 283 NAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
-.+|.+.|+++.+++. +++.++++.||.|++||--++++
T Consensus 257 ----------------------------------------d~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 257 ----------------------------------------DDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred ----------------------------------------ccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHH
Confidence 1359999999999932 88999999999999999877776
Q ss_pred eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 363 SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
+.....
T Consensus 296 v~t~~~-------------------------------------------------------------------------- 301 (430)
T KOG0640|consen 296 VRTIGN-------------------------------------------------------------------------- 301 (430)
T ss_pred HHHHHh--------------------------------------------------------------------------
Confidence 655431
Q ss_pred ceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccC---ceEEEEEcCCCcEEEEEcC-CCeE
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG---AITVIQYSPDVSMFASADG-NREA 518 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~-d~~i 518 (612)
-..+..|.+..|..+++|+++.+.|..+++|.+.+++......-.+-.+ --+...|+....+++.-++ .+.+
T Consensus 302 ----AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~sl 377 (430)
T KOG0640|consen 302 ----AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSL 377 (430)
T ss_pred ----hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCce
Confidence 1123468899999999999999999999999999998733322221111 2344567777777776554 4679
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
.-||.++...+.....+|.+.+..+.-||.+.-+++|+.|..+|+|--+
T Consensus 378 csWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 378 CSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 9999999888766677899999999999999999999999999999654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=213.68 Aligned_cols=281 Identities=16% Similarity=0.218 Sum_probs=228.3
Q ss_pred eEEEEcc--CCCEEEEe-------cCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCC-CEEEEeeCcCeEEEeecC
Q 007229 22 ILISGNP--KTDTILYC-------NGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNG-EWIASADVSGSVRIWGTH 89 (612)
Q Consensus 22 ~~~~~s~--d~~~l~~~-------~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~ 89 (612)
.++.||| ++++.+.. ++|.+.|.++..++-++.+. .-+..+..++||++. ..+++++.||+++|||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4788998 44333222 24799999997555555443 246789999999964 677888899999999987
Q ss_pred CCceeeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
........++.|..+|.++.|++-. +.+++.+-|+ .|++|+.+..+.+.++.+|...|...+|+|..+.++++++.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~---TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDG---TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCC---ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 6666777899999999999999954 5566667777 57888888999999999999999999999998889999999
Q ss_pred CCeEEEEeCCCCeeeecccccccceEEEEECC-CCCeEEEEEcCCcEEEEecCCCC-eeeeeeccCCccccEEEEEEecC
Q 007229 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGE-KIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
|+++++||++.......+..|...|.++.|+. +.+.|++|+.|+.|++||++.-+ ++.++ .+|.-.|..++|+|.
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL---~gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL---NGHGLAVRKVKFSPH 245 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee---cCCceEEEEEecCcc
Confidence 99999999876555555889999999999997 56788999999999999998754 34444 599999999999994
Q ss_pred -CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 247 -GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 247 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
...|++++.|-++++||. . .....+.+...
T Consensus 246 ~~~lLaSasYDmT~riw~~----~---------------------------------------------~~ds~~e~~~~ 276 (311)
T KOG0277|consen 246 HASLLASASYDMTVRIWDP----E---------------------------------------------RQDSAIETVDH 276 (311)
T ss_pred hhhHhhhccccceEEeccc----c---------------------------------------------cchhhhhhhhc
Confidence 568899999999999998 2 12223344456
Q ss_pred cccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 326 HVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
|+.-+..+.|+...+.++++++.|+.+++|+.
T Consensus 277 HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 277 HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEeccccccccCceeeecccccceeeecc
Confidence 88888999999556899999999999999974
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=235.35 Aligned_cols=292 Identities=22% Similarity=0.307 Sum_probs=245.5
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.....+..|.+.+..+.|-++...|++|+.|..|++|++...+. +...+.+..+.|+.+.|.++++++++++.++.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~--- 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN--- 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc---
Confidence 34455788999999999999999999999999999999987764 56678888899999999999999999999984
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
.++|+.+..+..+++.+|++.|+++.|..... .+++|+.|.+|++||+....+..++.. ...+..+..+ ...+++|
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISG 318 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeec
Confidence 68999999999999999999999999998876 499999999999999999888877542 3446666665 5578899
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
..|++|++||.++..+.... ...+.|+++..++++..+++++.|.++.+.|+ .+.+....+....
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv----~~gg~vtSl~ls~~g~~lLsssRDdtl~viDl----Rt~eI~~~~sA~g------- 383 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSV----PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDL----RTKEIRQTFSAEG------- 383 (459)
T ss_pred ccccceEEEeccCCceeeEe----ecCcceeeEeeccCCeEEeeecCCCceeeeec----ccccEEEEeeccc-------
Confidence 99999999999999999888 55669999999999999999999999999998 5544443332210
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
+. +
T Consensus 384 -----------------------------------------------------~k-~----------------------- 386 (459)
T KOG0288|consen 384 -----------------------------------------------------FK-C----------------------- 386 (459)
T ss_pred -----------------------------------------------------cc-c-----------------------
Confidence 00 0
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 387 -------------------------------------------------------------------------------- 386 (459)
T KOG0288|consen 387 -------------------------------------------------------------------------------- 386 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEE
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
....+.+.|||++.|+++|+.||.|+||++.++++............|++++|+|.|..|++++.++.+.+|
T Consensus 387 -asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 387 -ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 012466889999999999999999999999999985444444434469999999999999999999999999
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-30 Score=209.63 Aligned_cols=298 Identities=16% Similarity=0.193 Sum_probs=244.9
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
+-+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++++ .+.+..++.++..++|......++.++...+. .|+
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~-tIr 83 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDD-TIR 83 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCC-ceE
Confidence 3444666788999999999999999999999999999999994 45777788899999999888888887773332 688
Q ss_pred EEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 131 AFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.....+.+.++.|.||...|.+++.+|-+. .+++++.|++|++||++..++...+.-. .-..++|.|+|-++|++..
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecC
Confidence 888889999999999999999999999998 7999999999999999987776655433 3345689999999998888
Q ss_pred CCcEEEEecCCC--CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 211 DRKGLIYDGKSG--EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 211 dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
...|++||++.- .+...+....+.....+.+.|+|||++++.+...+.+.+.|. -.|....++....
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA----f~G~~~~tfs~~~------- 229 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA----FDGTVKSTFSGYP------- 229 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc----cCCcEeeeEeecc-------
Confidence 779999999864 345555444466788999999999999999999999999999 7888877776553
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
....+..-+...++++++++|+.||+|.+|+++++........
T Consensus 230 -------------------------------------~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 230 -------------------------------------NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred -------------------------------------CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 1112222222244589999999999999999999999887776
Q ss_pred -cccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 369 -YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 369 -~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
+..++.|+.+++.+...++.+..+.+|-.....
T Consensus 273 ~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 273 PNGGPVSCVRFNPRYAMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred CCCCCccccccCCceeeeeecCceEEEEeccccc
Confidence 689999999999999999999999999765443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=225.48 Aligned_cols=285 Identities=21% Similarity=0.288 Sum_probs=245.1
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 227 (612)
..+.++...|..+ .+++|+.|..+.++|.+..+.+..++||...|+.+.|+|+...+++++.|-.|+||..........
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 4678888888755 599999999999999999999999999999999999999999999999999999999887775555
Q ss_pred eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCE
Q 007229 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307 (612)
Q Consensus 228 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (612)
. ..|..+|+.+..+|.|.||++++.||...+.|+ +++..+...
T Consensus 299 ~---~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~----~~g~~lt~v------------------------------ 341 (506)
T KOG0289|consen 299 S---RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI----SSGSQLTVV------------------------------ 341 (506)
T ss_pred c---ccccccceeeeeccCCcEEEEecCCceEEEEEc----cCCcEEEEE------------------------------
Confidence 5 489999999999999999999999999999888 443332211
Q ss_pred EEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEec
Q 007229 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAG 387 (612)
Q Consensus 308 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 387 (612)
+.++
T Consensus 342 ---------------------------------------s~~~------------------------------------- 345 (506)
T KOG0289|consen 342 ---------------------------------------SDET------------------------------------- 345 (506)
T ss_pred ---------------------------------------eecc-------------------------------------
Confidence 1100
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 467 (612)
..-.+++.+|+|||.++.+
T Consensus 346 -------------------------------------------------------------s~v~~ts~~fHpDgLifgt 364 (506)
T KOG0289|consen 346 -------------------------------------------------------------SDVEYTSAAFHPDGLIFGT 364 (506)
T ss_pred -------------------------------------------------------------ccceeEEeeEcCCceEEec
Confidence 0014788999999999999
Q ss_pred EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecC
Q 007229 468 GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP 547 (612)
Q Consensus 468 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~ 547 (612)
|..||.|+|||+.++.. ...+++|+++|..++|+.+|-+||++.+|+.|++||++..+...........++.++.|.+
T Consensus 365 gt~d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred cCCCceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence 99999999999998875 7889999999999999999999999999999999999988765443333445799999999
Q ss_pred CCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 548 SSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 548 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
.|.+|+.++.|=+|++++-.+..+.++..+..|.+..+.+.|. ...+++++|.|..++++.+
T Consensus 443 SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 443 SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9999999988877888776665668888899999999999999 8899999999999999875
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=229.97 Aligned_cols=286 Identities=16% Similarity=0.219 Sum_probs=237.2
Q ss_pred ccCCCCCCCceeEEEEccCCC-EEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecC
Q 007229 11 ACAPSTERGRGILISGNPKTD-TILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~ 89 (612)
++.+. +...|++++|||... -+|+.++-.+.||+..+....+.+......|.++.|-.||++||.|+..|.|+|+|+.
T Consensus 20 ~~~~k-e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 20 PPVHK-EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccccc-ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 34443 345999999999555 4677788999999999988888888889999999999999999999999999999966
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEE-EEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRI-VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
+.. +...+..|+.++....|+|++..+ ++++++. .+++|+.++......+.+|++.|.|.+|+|..+.+++||+.
T Consensus 99 ~r~-iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~---v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 99 SRV-ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK---VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred cHH-HHHHHhhccCceeEEEecccCCeEEEecCCCc---eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 644 666899999999999999976655 5555555 57888888888877999999999999999998889999999
Q ss_pred CCeEEEEeCCCC-eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 169 DFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 169 d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
||.|++||.+.. ..+.++ .|..+|..+.+-|.|..+++++. ..++|||+.+|...... ...|...|+|+++..++
T Consensus 175 Dg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~--~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS--MFNHNKTVTCLRLASDS 250 (487)
T ss_pred CceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh--hhcccceEEEEEeecCC
Confidence 999999999887 555555 69999999999999999998874 67999999965544333 12599999999999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
..|++++-|+.+++||+ .+.+.+..+.. .
T Consensus 251 ~rLlS~sLD~~VKVfd~----t~~Kvv~s~~~-----------------------------------------------~ 279 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDT----TNYKVVHSWKY-----------------------------------------------P 279 (487)
T ss_pred ceEeecccccceEEEEc----cceEEEEeeec-----------------------------------------------c
Confidence 99999999999999998 77777766653 3
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
++|.+++.++ +++.++.|..||.+.+-+.
T Consensus 280 ~pvLsiavs~-dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 280 GPVLSIAVSP-DDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred cceeeEEecC-CCceEEEecccceeeeehh
Confidence 4677777774 2677888888887766643
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=234.46 Aligned_cols=461 Identities=19% Similarity=0.279 Sum_probs=294.0
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee------cccccccceEEEEECCCCCeEEEEEcC
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL------SHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
+.+..+.+|.+.|+.+.|+|-...+|++|+.|..|++|.+..+.... .+.+..-.|.++.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 34566789999999999999888899999999999999988543221 133345578999999966556666678
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
|++++||+.+++.+..+ .+|...|.+..|+.||.+|++.+.|+.|+|||.+ ..++.++..+.+... .. ..
T Consensus 150 g~v~i~D~stqk~~~el---~~h~d~vQSa~WseDG~llatscKdkqirifDPR---a~~~piQ~te~H~~~--rd--sR 219 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVEL---SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR---ASMEPIQTTEGHGGM--RD--SR 219 (1012)
T ss_pred ceEEEEEcccCceeecc---cCCchhhhccccccCCceEeeecCCcceEEeCCc---cCCCccccccccccc--hh--he
Confidence 99999999999999988 4999999999999999999999999999999984 345556555444322 11 22
Q ss_pred eeccCC--EEEEEEcC----CEEEEEEcCCCCCCceeecCcccceeEEEEEecC-CcEEEEEecCCcEEEEEcCCceeee
Q 007229 292 CLWQND--HLITVSLG----GIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS-QQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 292 ~~~~~~--~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
+.|.++ ++++.+.+ ..+++||......+...+.-....-.-+-..+++ +-++++|-.+..+..+.+...+...
T Consensus 220 v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyL 299 (1012)
T KOG1445|consen 220 VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYL 299 (1012)
T ss_pred eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcch
Confidence 334433 66666654 5799999888777776655433222222222333 4455566667788888776543322
Q ss_pred ecee---------------------cccc--------------eEEEEe-------e----------------ccEE---
Q 007229 365 LEKK---------------------YDAR--------------IKCLAA-------V----------------EEVI--- 383 (612)
Q Consensus 365 ~~~~---------------------~~~~--------------i~~~~~-------~----------------~~~l--- 383 (612)
.... .... |.++.. . ++++
T Consensus 300 s~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~ 379 (1012)
T KOG1445|consen 300 SHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGT 379 (1012)
T ss_pred hhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCc
Confidence 1000 0000 000000 0 0000
Q ss_pred -----------------------------E-Ee--------------------cCCC--------------eEEEEec--
Q 007229 384 -----------------------------F-TA--------------------GFDN--------------KVWRVPL-- 397 (612)
Q Consensus 384 -----------------------------~-~~--------------------~~~~--------------~i~~~~~-- 397 (612)
+ ++ ..+. .++-.+.
T Consensus 380 Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~ 459 (1012)
T KOG1445|consen 380 NQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRP 459 (1012)
T ss_pred cccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccc
Confidence 0 00 0000 0000000
Q ss_pred ---CCC-------------CCC-------------ccceeccCC-----Ccceee------------------------e
Q 007229 398 ---CEG-------------ECG-------------DAEHIDVGS-----QPLDLS------------------------L 419 (612)
Q Consensus 398 ---~~~-------------~~~-------------~~~~~~~~~-----~~~~~~------------------------~ 419 (612)
..+ ... ......... .+...+ .
T Consensus 460 ~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~ 539 (1012)
T KOG1445|consen 460 YEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPL 539 (1012)
T ss_pred cccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccc
Confidence 000 000 000000000 000000 0
Q ss_pred cCC------------------------------------------------CCcE--EEEEeeccEEEee---cc----c
Q 007229 420 ALS------------------------------------------------SPEL--ALVSTESGVILLD---SL----K 442 (612)
Q Consensus 420 ~~~------------------------------------------------~~~~--~~~~~~~~~~~~~---~~----~ 442 (612)
++. ..+. -+.+..+.+-+++ .+ .
T Consensus 540 s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDg 619 (1012)
T KOG1445|consen 540 SQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDG 619 (1012)
T ss_pred cccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcc
Confidence 000 0000 0001111122222 11 1
Q ss_pred ceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCccc-----ccceeeccccCceEEEEEcC-CCcEEEEEcCC
Q 007229 443 VMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTL-----TEEMVLEKHRGAITVIQYSP-DVSMFASADGN 515 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~-----~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d 515 (612)
.+..+..+..|+.+.|.| |...||+++.||.|++|.+..+.+ .+...+..|...|+++.|+| -...|++++.|
T Consensus 620 v~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 620 VMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred cccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 122233456788999999 788999999999999999876543 44667889999999999999 56789999999
Q ss_pred CeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc-CeeeEEEe-cCc
Q 007229 516 REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG-GVYGVAFM-DDF 593 (612)
Q Consensus 516 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~~-~~~ 593 (612)
.+|++||+.+.+.. ..+.+|.+.|..++|||||+.+|+.+.||+|++|+-++.. +.+..-++..+ .--.|.|. +++
T Consensus 700 ~Ti~lWDl~~~~~~-~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr 777 (1012)
T KOG1445|consen 700 STIELWDLANAKLY-SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGR 777 (1012)
T ss_pred ceeeeeehhhhhhh-heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCc
Confidence 99999999999886 5688899999999999999999999999999999998844 55555443322 33457788 999
Q ss_pred eEEEccCCC----eEEEEEec
Q 007229 594 NVVSSGEDA----CIRVWRLA 610 (612)
Q Consensus 594 ~l~s~~~d~----~i~~w~~~ 610 (612)
+++..|-|. .|.+||.+
T Consensus 778 ~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 778 IVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred EEEEecccccchhhhhhhhhh
Confidence 988877654 46666543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-30 Score=209.98 Aligned_cols=296 Identities=18% Similarity=0.243 Sum_probs=236.7
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC--CC
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA--DK 257 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--dg 257 (612)
.+..+.++.....|.++.|+++|.+|++++.|.++++||..+++....+. .+...+..++|......++.++. |.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCCCCC
Confidence 34455566677889999999999999999999999999999999999983 55667888899887777777766 77
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 337 (612)
+|+..++ .+.+.+ +.+.||...|..+..++
T Consensus 81 tIryLsl----~dNkyl----------------------------------------------RYF~GH~~~V~sL~~sP 110 (311)
T KOG1446|consen 81 TIRYLSL----HDNKYL----------------------------------------------RYFPGHKKRVNSLSVSP 110 (311)
T ss_pred ceEEEEe----ecCceE----------------------------------------------EEcCCCCceEEEEEecC
Confidence 8999888 444444 55678999999999996
Q ss_pred cCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCccee
Q 007229 338 ISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDL 417 (612)
Q Consensus 338 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (612)
. ++.+++++.|++|++||++..++.........++.+..+.|-.++++...+.|++||++.-....-.......
T Consensus 111 ~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~----- 184 (311)
T KOG1446|consen 111 K-DDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD----- 184 (311)
T ss_pred C-CCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-----
Confidence 5 4899999999999999999888888777677778777778888899888889999999865432111110000
Q ss_pred eecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCc-
Q 007229 418 SLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA- 496 (612)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~- 496 (612)
....+.+.+.|||||++++.++..+.+++.|.-+|.+ ...+..+...
T Consensus 185 ------------------------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~--~~tfs~~~~~~ 232 (311)
T KOG1446|consen 185 ------------------------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV--KSTFSGYPNAG 232 (311)
T ss_pred ------------------------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE--eeeEeeccCCC
Confidence 1234688999999999999999999999999998887 4444444332
Q ss_pred --eEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 497 --ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 497 --i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
-....|+||++++++|+.||+|.+|+++++..+......+.+++.++.|+|.-.++++++ ..+.+|=...
T Consensus 233 ~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 256789999999999999999999999999988554444799999999999877777764 5688886654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=230.19 Aligned_cols=288 Identities=14% Similarity=0.191 Sum_probs=236.0
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
+..+.+|.+.|.+++=+|..-..+++|+.||.|++||+.+.++..+++.|.+.|..+++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4567899999999999999855799999999999999999999999999999999999986 56889999999999997
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEE
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHL 299 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (612)
+. ....++ .....+..+.-+..+..++++++ .|.|||. ....+++++
T Consensus 137 ~~-~p~~ti----lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~----~R~~Pv~sm---------------------- 183 (433)
T KOG0268|consen 137 DG-PPLHTI----LGKSVYLGIDHHRKNSVFATCGE--QIDIWDE----QRDNPVSSM---------------------- 183 (433)
T ss_pred cC-Ccceee----eccccccccccccccccccccCc--eeeeccc----ccCCcccee----------------------
Confidence 65 466666 45566777777777778888875 4999998 444444333
Q ss_pred EEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEee
Q 007229 300 ITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAV 379 (612)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 379 (612)
.-....+.++.|++.....|+++..|+.|.+||++...+.....
T Consensus 184 ------------------------swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------------ 227 (433)
T KOG0268|consen 184 ------------------------SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI------------ 227 (433)
T ss_pred ------------------------ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee------------
Confidence 33456788888887668899999999999999998776544321
Q ss_pred ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc
Q 007229 380 EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA 459 (612)
Q Consensus 380 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 459 (612)
....-+.++|+
T Consensus 228 ---------------------------------------------------------------------~~mRTN~Iswn 238 (433)
T KOG0268|consen 228 ---------------------------------------------------------------------LTMRTNTICWN 238 (433)
T ss_pred ---------------------------------------------------------------------eeccccceecC
Confidence 12235678999
Q ss_pred cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccc
Q 007229 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR 539 (612)
Q Consensus 460 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 539 (612)
|.+-.+.+|++|..++.||++... .+.....+|.+.|.+++|||.|+-+++|+.|.+|+||....+...-.-...-...
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~ 317 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQH 317 (433)
T ss_pred ccccceeeccccccceehhhhhhc-ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhhe
Confidence 988888999999999999998765 3467788999999999999999999999999999999998876542222223457
Q ss_pred eeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 540 INCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 540 i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|.++.||.|.+++++||+|+.|++|....
T Consensus 318 V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999999999999999999998765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=232.91 Aligned_cols=209 Identities=19% Similarity=0.235 Sum_probs=165.9
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce----eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
..+.+|+..|+++++.|.|-.+++|+.|.+|++||+..-.. .+.........|.+++|++.|..|++.+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq--- 237 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ--- 237 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc---
Confidence 34788999999999999999999999999999999986443 22222334558999999999988877776552
Q ss_pred EEEEEecCCce------------eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec-c-----cccc
Q 007229 129 VRAFMWDSGTT------------VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-H-----REHS 190 (612)
Q Consensus 129 i~i~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~-----~~~~ 190 (612)
.++++-+-.+. +..-+||...++|-+|+|+.+..++|++.||++|+||+...+.... + .+..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 34444432221 2234689999999999999988999999999999999876543322 2 2344
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc--cEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG--SIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
-+++.++|++||+++|+|+.||.|.+|+.........+.....|.. .|+++.|++||++|++-+.|+++++||+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 5789999999999999999999999999865544444444557776 9999999999999999999999999999
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=223.33 Aligned_cols=287 Identities=13% Similarity=0.123 Sum_probs=239.7
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~ 92 (612)
..+....++++...|....+++|+ +..+.++|...++.+..+.||...|+.+.|+|+...+++++.|-.|+||......
T Consensus 215 H~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 215 HSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred eccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 344556889999999888889988 6799999999999999999999999999999999999999999999999998877
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc--CCceEEEEEEcCCCCEEEEEeecCC
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG--HSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
.......|..+|+.+...|.|.||+++++++ +.-..+..++..+..... ..-.+++.+|+|||- ++.+|..|+
T Consensus 295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~---~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~ 369 (506)
T KOG0289|consen 295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDG---TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDG 369 (506)
T ss_pred -CccccccccccceeeeeccCCcEEEEecCCc---eEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCc
Confidence 4557889999999999999999999999998 455666667877766543 335689999999998 799999999
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.+++||++++.....+.+|+++|..++|+.+|-+|++++.|+.|++||++.-+...++.. ....++.++.|.+.|++|
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--~~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--DEKKEVNSLSFDQSGTYL 447 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec--cccccceeEEEcCCCCeE
Confidence 999999999999999999999999999999999999999999999999999888888743 333479999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
+.++.|=.|++++- ...+ ...+..+..|.+..
T Consensus 448 ~~~g~~l~Vy~~~k--~~k~----------------------------------------------W~~~~~~~~~sg~s 479 (506)
T KOG0289|consen 448 GIAGSDLQVYICKK--KTKS----------------------------------------------WTEIKELADHSGLS 479 (506)
T ss_pred EeecceeEEEEEec--cccc----------------------------------------------ceeeehhhhccccc
Confidence 99976644444442 1111 12223444566677
Q ss_pred eEEEEE-ecCCcEEEEEecCCcEEEEEc
Q 007229 331 STLTAL-KISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 331 ~~~~~~-~~~~~~l~~~~~dg~i~~wd~ 357 (612)
+.+.|. . ..++++++.|..++++.+
T Consensus 480 t~v~Fg~~--aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 480 TGVRFGEH--AQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeeeccc--ceEEeeccchhheEEeec
Confidence 777777 4 688889999888887743
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=227.28 Aligned_cols=315 Identities=17% Similarity=0.286 Sum_probs=244.7
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
.+.+..|..+|+|++++||+++..+++.+++|.-|++.+++......... .|...
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev~k~----------------------- 189 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EVLKS----------------------- 189 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hhhhh-----------------------
Confidence 55678899999999999999999999999999999999987432111110 11000
Q ss_pred EEecCCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 132 FMWDSGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 132 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.+.+...- ++|...+.+++.+||++| |++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....|++++.
T Consensus 190 ----~~~~~k~~r~~h~keil~~avS~Dgky-latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 190 ----HGNPLKESRKGHVKEILTLAVSSDGKY-LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred ----ccCCCCcccccccceeEEEEEcCCCcE-EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec
Confidence 01111111 389999999999999996 999999999999999999999999999999999999988889999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
|+++++|+++....+.++ .+|...|.++....-++.+-+|+.|+++++|++. .
T Consensus 265 Drsvkvw~~~~~s~vetl---yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~----e-------------------- 317 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETL---YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP----E-------------------- 317 (479)
T ss_pred CCceEEEehhHhHHHHHH---hCCccceeeechhcccceEEeccccceeEEEecc----c--------------------
Confidence 999999999988887777 4999999999998888878788899999999982 1
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
.....+.++.+.+.+++|.+ ...+++|+.+|.|.+|++...+++.......
T Consensus 318 ---------------------------esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 318 ---------------------------ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred ---------------------------cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccc
Confidence 11234567888999999998 8999999999999999998877765543100
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
+-+ ........+
T Consensus 369 gv~--------------------------------------------------------------------~~~~~~~~~ 380 (479)
T KOG0299|consen 369 GVI--------------------------------------------------------------------PELDPVNGN 380 (479)
T ss_pred ccc--------------------------------------------------------------------CCccccccc
Confidence 000 000111123
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccCc--ccccceeeccccCceEEEEEcCCCcEEEEE-cCCCeEEEE
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISGN--TLTEEMVLEKHRGAITVIQYSPDVSMFASA-DGNREAIVW 521 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iw 521 (612)
..|++++..|...++|+|+.+|.|++|.+..+ .+.....+. -.+.|++++|+++|+++++| +....+--|
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 47999999999999999999999999999887 222233333 56789999999999966655 333333333
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=232.09 Aligned_cols=288 Identities=19% Similarity=0.317 Sum_probs=233.5
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
+....+..|.+.+..+.|-++.. .|++|+.|..|++|+....+ .+.++.+..++|+++.|.++++++++++.|+.++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 34456778999999999999977 69999999999999987766 6777888999999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+|++...+...++ .+|...|+++.|......+++++.|.++++||+ ....+.++....
T Consensus 245 ~Wnvd~~r~~~TL---sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl----~k~~C~kt~l~~--------------- 302 (459)
T KOG0288|consen 245 LWNVDSLRLRHTL---SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL----QKAYCSKTVLPG--------------- 302 (459)
T ss_pred eeeccchhhhhhh---cccccceeeehhhccccceeeccccchhhhhhh----hhhheecccccc---------------
Confidence 9999999999999 489999999999987767999999999999999 665555443321
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
..+..+... ...+++|-.|+.|++||.++......
T Consensus 303 --------------------------------S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~s---------- 337 (459)
T KOG0288|consen 303 --------------------------------SQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRS---------- 337 (459)
T ss_pred --------------------------------ccccceEec---ceeeeecccccceEEEeccCCceeeE----------
Confidence 122233332 45667777788888887766544332
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
.+..+.|++
T Consensus 338 -----------------------------------------------------------------------v~~gg~vtS 346 (459)
T KOG0288|consen 338 -----------------------------------------------------------------------VPLGGRVTS 346 (459)
T ss_pred -----------------------------------------------------------------------eecCcceee
Confidence 233456999
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeecc--ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK--HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
+..++++..|.+.+.|.++.+.|+++........-.+ .....+.+.|||++.|+|+|+.||.|+||++.++++....-
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec
Confidence 9999999999999999999999999887632222221 12348899999999999999999999999999999875444
Q ss_pred ccccc-ceeEEEecCCCcEEEEeecCcEEEEE
Q 007229 534 LFHTA-RINCLAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 534 ~~~~~-~i~~~~~s~~~~~l~s~~~d~~i~iw 564 (612)
..+.. .|++++|+|.|..|++++.++.+.+|
T Consensus 427 ~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 427 LSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 43443 69999999999999999999999999
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=241.26 Aligned_cols=266 Identities=11% Similarity=0.119 Sum_probs=205.1
Q ss_pred eEeeeeeccCCCC--CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC----------cee---eEeccCCCceEEEEE
Q 007229 4 VHLSETYACAPST--ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP----------LHV---EFYGEHGYPVTVARY 67 (612)
Q Consensus 4 ~~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~----------~~~---~~~~~h~~~v~~~~~ 67 (612)
...+.+++..+.. +...|.....++|+..++.++ +.....|+...+ +.. ..+.+|.+.|++++|
T Consensus 4 sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f 83 (493)
T PTZ00421 4 SRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF 83 (493)
T ss_pred ccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE
Confidence 3445566655543 345677777788865555554 444455654333 221 247799999999999
Q ss_pred CC-CCCEEEEeeCcCeEEEeecCCCc------eeeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCce
Q 007229 68 SP-NGEWIASADVSGSVRIWGTHNGF------VLKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTT 139 (612)
Q Consensus 68 s~-d~~~las~~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~ 139 (612)
+| ++++||+|+.|++|++||+.++. .....+.+|...|.+++|+|++ .+|++++.++ .+++|+.++++.
T Consensus 84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg---tVrIWDl~tg~~ 160 (493)
T PTZ00421 84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM---VVNVWDVERGKA 160 (493)
T ss_pred cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC---EEEEEECCCCeE
Confidence 99 89999999999999999997653 1345678999999999999986 6899999888 678888889999
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccc-eEEEEECCCCCeEEEEE----cCCcE
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF-VNCIRFSPDGSKLISVS----SDRKG 214 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~----~dg~i 214 (612)
+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|
T Consensus 161 ~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 999999999999999999999 6999999999999999999998888888765 45678999888887765 47899
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeee
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
++||+++........ .......+....|++++++|++++ .|+.|++||+ .+++......
T Consensus 240 klWDlr~~~~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl----~~~~~~~~~~ 299 (493)
T PTZ00421 240 MLWDTRKMASPYSTV-DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL----MNERLTFCSS 299 (493)
T ss_pred EEEeCCCCCCceeEe-ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe----eCCceEEEee
Confidence 999998765332221 112334566678899999999887 4999999999 6666655443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=250.30 Aligned_cols=208 Identities=21% Similarity=0.277 Sum_probs=170.2
Q ss_pred CCceeEEEEccCCCEEEEec---CCEEEEEeCCC------------CceeeEeccCCCceEEEEECCCCCEEEEeeCcCe
Q 007229 18 RGRGILISGNPKTDTILYCN---GRSVLIRYLDK------------PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS 82 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~ 82 (612)
..+|.+++.+|||..+|+|+ |+.++||+.+. ++.+..+..|.+.|+|+.|||||++||+|++|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 44689999999999999998 67888998641 3455667889999999999999999999999999
Q ss_pred EEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEE
Q 007229 83 VRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 83 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
|.||...... . ..+. ++.++ ..+.+..+....+.+|...|..++|+|++. +
T Consensus 93 v~iW~~~~~~-~-----------~~~f----------gs~g~------~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~ 143 (942)
T KOG0973|consen 93 VMIWERAEIG-S-----------GTVF----------GSTGG------AKNVESWKVVSILRGHDSDVLDVNWSPDDS-L 143 (942)
T ss_pred EEEeeecccC-C-----------cccc----------ccccc------ccccceeeEEEEEecCCCccceeccCCCcc-E
Confidence 9999887510 0 0111 11111 234445577888999999999999999999 5
Q ss_pred EEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC---CccccEE
Q 007229 163 IATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---GHHGSIY 239 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~ 239 (612)
+++++.|++|.+||..+++.+..+++|...|..+.|.|-|+|+++-+.|++|+||++.+-.....+..+. .....+.
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999999999999999999999999999999999987766665553211 2334578
Q ss_pred EEEEecCCCEEEEEe
Q 007229 240 AVSWSPDGKKVLTVS 254 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~ 254 (612)
.+.|+|||++|++.-
T Consensus 224 RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPN 238 (942)
T ss_pred ecccCCCcCeecchh
Confidence 899999999999864
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=245.39 Aligned_cols=279 Identities=22% Similarity=0.329 Sum_probs=250.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
|...+.+..|. ..++++++.|++|++||..++..+...+.+|.+.|.+++|..-+.+|++++.|. .+++|+..+|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~---t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK---TERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCC---cEEeEecCCC
Confidence 67788899998 558999999999999999999977767999999999999998888999999888 5789998899
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
++.+.+.+|...|.++...+. .+++|+.|.+|++|+++++..+..+.+|.++|.++..+ +.++++|+.|++|++|
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVW 356 (537)
T ss_pred cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEE
Confidence 999999999999999998776 69999999999999999999999999999999999998 7899999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC-eeEeeeeccCccccceeeeeeeccC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG-RVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+.+++++..+ .+|...|+++.+.+. ..+++|+.|++|++||+ .+. +++
T Consensus 357 ~~~~~~cl~sl---~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl----~~~~~c~---------------------- 406 (537)
T KOG0274|consen 357 DPRTGKCLKSL---SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL----RTKRKCI---------------------- 406 (537)
T ss_pred Ehhhceeeeee---cCCcceEEEEEecCc-ceEEeeeeccceEeecC----Cchhhhh----------------------
Confidence 99999999999 489999999988765 88999999999999999 555 343
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-cccceEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-YDARIKC 375 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~ 375 (612)
..+.+|..-+..+.+. ++.+++++.|+.|++||...+++...... +...+.+
T Consensus 407 ------------------------~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~ 459 (537)
T KOG0274|consen 407 ------------------------HTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSA 459 (537)
T ss_pred ------------------------hhhcCCcccccccccc---cceeEeccccccEEEeecccCceeeeeccCCcccEEE
Confidence 4455666666666555 68999999999999999999999998877 6788888
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCC
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
++.....+++++.++.+++||++++...
T Consensus 460 l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 460 LALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eecCcceEEEEecCCeeEEEecccCchh
Confidence 8888899999999999999999988865
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=230.31 Aligned_cols=312 Identities=18% Similarity=0.223 Sum_probs=235.5
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe----eeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK----IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
+.....+++|+..|.++++.|.|..+++|+.|.+|++||+..... ...+ .......|.++.|++.|..|++.+.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l--~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL--QPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhcc--CcccccccceeeecCCCCeEEEEec
Confidence 334445788999999999999999999999999999999875332 2222 2244568999999999999999998
Q ss_pred CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEE
Q 007229 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTA 335 (612)
Q Consensus 256 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (612)
....+++|- ...+.+...... -+|-| +....||...+++.+|
T Consensus 235 ~aqakl~DR----dG~~~~e~~KGD---------------------------QYI~D-------m~nTKGHia~lt~g~w 276 (641)
T KOG0772|consen 235 SAQAKLLDR----DGFEIVEFSKGD---------------------------QYIRD-------MYNTKGHIAELTCGCW 276 (641)
T ss_pred CcceeEEcc----CCceeeeeeccc---------------------------hhhhh-------hhccCCceeeeecccc
Confidence 899999996 333333322221 12222 2345689999999999
Q ss_pred EecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcc
Q 007229 336 LKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPL 415 (612)
Q Consensus 336 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (612)
++.....+++++.||++++||+...+...... ......
T Consensus 277 hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi----------------------------k~k~~~-------------- 314 (641)
T KOG0772|consen 277 HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI----------------------------KTKPAG-------------- 314 (641)
T ss_pred ccCcccceEEecCCCcEEEEecCCchhheeEE----------------------------eeccCC--------------
Confidence 97779999999999999999987654321110 000000
Q ss_pred eeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccc-ceeecccc
Q 007229 416 DLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTE-EMVLEKHR 494 (612)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~ 494 (612)
...-++++++|+||++++|+|+.||.|.+|+..+....+ ...-.+|.
T Consensus 315 --------------------------------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 315 --------------------------------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred --------------------------------CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 012258899999999999999999999999985543322 23345677
Q ss_pred C--ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc--cccceeEEEecCCCcEEEEeec------CcEEEEE
Q 007229 495 G--AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF--HTARINCLAWSPSSTMVATGSI------DTCVIIY 564 (612)
Q Consensus 495 ~--~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~------d~~i~iw 564 (612)
. .|+++.||+||++|++-+.|+++++||++..+..+....+ ..-+-+.++|||+.++|++|.. .|.+.+|
T Consensus 363 ~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 363 PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 7 8999999999999999999999999999987764443332 2345678999999999999863 5689999
Q ss_pred EccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEE
Q 007229 565 EIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVW 607 (612)
Q Consensus 565 d~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w 607 (612)
|..+ . +.+..+.-....|..+.|+ .-+.|+.++.||.+++|
T Consensus 443 d~~t-~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 443 DRMT-L-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eccc-e-eeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 9887 5 6666666667789999999 66778889999999986
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=226.21 Aligned_cols=284 Identities=19% Similarity=0.292 Sum_probs=219.1
Q ss_pred eecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 183 KLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
+..+.+|.+.|.+++=+|.. ..+++|+.||.|++||+....+...+ ..|.+.|..+++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f---~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF---KAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee---ecccCceeeEEecc--cceEEecCCcceee
Confidence 34567999999999999987 78999999999999999999999998 49999999999986 56889999999999
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
|.+ + +.++.++.... .+..+.-+ ..++
T Consensus 134 wk~----~-~~p~~tilg~s-----------------------------------------------~~~gIdh~-~~~~ 160 (433)
T KOG0268|consen 134 WKI----D-GPPLHTILGKS-----------------------------------------------VYLGIDHH-RKNS 160 (433)
T ss_pred eec----c-CCcceeeeccc-----------------------------------------------cccccccc-cccc
Confidence 998 2 23443333221 12222222 1156
Q ss_pred EEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecC
Q 007229 342 TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421 (612)
Q Consensus 342 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (612)
.++++++ .|.+||.....+.. .+.+
T Consensus 161 ~FaTcGe--~i~IWD~~R~~Pv~----------smsw------------------------------------------- 185 (433)
T KOG0268|consen 161 VFATCGE--QIDIWDEQRDNPVS----------SMSW------------------------------------------- 185 (433)
T ss_pred cccccCc--eeeecccccCCccc----------eeec-------------------------------------------
Confidence 6777764 47888876433222 2211
Q ss_pred CCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC-CeEEEEecCCeEEEEEccCcccccceeeccccCceEEE
Q 007229 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG-SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVI 500 (612)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~ 500 (612)
....|.++.|+|-. ..|+++.+|+.|.+||++.+.+.....+.- .-+.|
T Consensus 186 ---------------------------G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~I 235 (433)
T KOG0268|consen 186 ---------------------------GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM---RTNTI 235 (433)
T ss_pred ---------------------------CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec---cccce
Confidence 01247889999954 567777899999999999988754444433 45678
Q ss_pred EEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccc
Q 007229 501 QYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH 580 (612)
Q Consensus 501 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h 580 (612)
+|+|.+--+++|++|..++.||++..........+|.+.|.++.|||.|+-+++||.|.+|+||.+..+. ..-.-...-
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRdiYhtkR 314 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRDIYHTKR 314 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc-chhhhhHhh
Confidence 9999888899999999999999999888778889999999999999999999999999999999998733 221111222
Q ss_pred ccCeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 581 LGGVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 581 ~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
...|.++.|| |.+++++||+|+.|++|.-.
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 3469999999 99999999999999999853
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=204.84 Aligned_cols=285 Identities=19% Similarity=0.268 Sum_probs=231.0
Q ss_pred CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
.+|.+.+.+++|+.+|..|++++.|+++.+|++ +..+....
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~----e~~r~~~~----------------------------------- 57 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNL----ERDRFRKE----------------------------------- 57 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEe----cchhhhhh-----------------------------------
Confidence 478899999999999999999999999999999 44432221
Q ss_pred EcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE-EEEeeccEEEEecCCC
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK-CLAAVEEVIFTAGFDN 390 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~~~ 390 (612)
...++|.+.|..+++.+.....+++++.|..|++||.+.+++........+.+. +-.+++++++.++.|.
T Consensus 58 ---------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD 128 (313)
T KOG1407|consen 58 ---------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD 128 (313)
T ss_pred ---------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc
Confidence 235679999999999977799999999999999999999988776554333333 3333777788888887
Q ss_pred eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec
Q 007229 391 KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ 470 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 470 (612)
.|...|.++.+ .....+.+..+..++|+.++.+++....
T Consensus 129 ~it~id~r~~~-----------------------------------------~~~~~~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 129 RITFIDARTYK-----------------------------------------IVNEEQFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred cEEEEEecccc-----------------------------------------eeehhcccceeeeeeecCCCCEEEEecC
Confidence 77777776554 3344445667888999988888888888
Q ss_pred CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCc
Q 007229 471 NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 471 dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 550 (612)
.|.|.|......+. +..+++|.....|+.|+|+|+++|+|+.|-.+.+||++..-++ ..+..+.-+|..+.||.||+
T Consensus 168 lG~v~ILsypsLkp--v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~-R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 168 LGCVEILSYPSLKP--VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE-RCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred CceEEEEecccccc--ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh-eeeccccCceEEEEeccCcc
Confidence 89999999986555 8899999999999999999999999999999999999988776 55666899999999999999
Q ss_pred EEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCce-EEEccCC---------CeEEEEEecc
Q 007229 551 MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGED---------ACIRVWRLAT 611 (612)
Q Consensus 551 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d---------~~i~~w~~~~ 611 (612)
+||+|++|..|-|=++++ + ..+...+ +.++-..++|.|.+. |+-++.| |.|+++-+.+
T Consensus 245 ~lASaSEDh~IDIA~vet-G-d~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVET-G-DRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred eeeccCccceEEeEeccc-C-CeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999999999999999999 5 4555444 778899999995555 4444432 6788887654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=245.46 Aligned_cols=304 Identities=19% Similarity=0.249 Sum_probs=213.9
Q ss_pred eeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe--cCCCEEEEEeCCCcE
Q 007229 183 KLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS--PDGKKVLTVSADKSA 259 (612)
Q Consensus 183 ~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~dg~i 259 (612)
.+.+. .|.+.|.+|.||+||+|||+|+.|+.|+||.+...+.. .. +...-.++.+. .++..-.+....+.+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~-----~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RV-----AEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cc-----cccccchhhhhhhhccccCccccccccc
Confidence 34455 89999999999999999999999999999998764431 11 11111111111 111100011111000
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
.=-... .+........ .+ -.....-..+++..+.||.+.|..+.|+.
T Consensus 333 ~~~~s~--~~~~~~s~~~---------------~~--------------p~~~f~f~ekP~~ef~GHt~DILDlSWSK-- 379 (712)
T KOG0283|consen 333 SSRTSS--SRKGSQSPCV---------------LL--------------PLKAFVFSEKPFCEFKGHTADILDLSWSK-- 379 (712)
T ss_pred cccccc--cccccCCccc---------------cC--------------CCccccccccchhhhhccchhheeccccc--
Confidence 000000 0000000000 00 00000123567788999999999999998
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcce
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLD 416 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 416 (612)
.++|++++.|.++++|++....++..+. |..-|+|++| +++++++|+-|+++++|++...+..
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv------------- 445 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV------------- 445 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-------------
Confidence 8999999999999999999999999988 9999999999 8899999999999999999765522
Q ss_pred eeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc---
Q 007229 417 LSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH--- 493 (612)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~--- 493 (612)
.| .+...-|++++|+|||++.++|+-+|.+++|+....++.....+..|
T Consensus 446 --------------------~W--------~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 446 --------------------DW--------NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred --------------------ee--------hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 22 22335699999999999999999999999999998876433333322
Q ss_pred ---cCceEEEEEcCC-CcEEEEEcCCCeEEEEecCCcceeeecccccc--cceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 494 ---RGAITVIQYSPD-VSMFASADGNREAIVWDRVSKEVKLNNMLFHT--ARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 494 ---~~~i~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
...|+.++|.|. ...+++.+.|..|||+|.+...++. .+.++. ..-....|+.||++|+++++|..|++|+++
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~-KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH-KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh-hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 237999999984 3457777899999999998877763 344432 223467899999999999999999999985
Q ss_pred C
Q 007229 568 K 568 (612)
Q Consensus 568 ~ 568 (612)
.
T Consensus 577 ~ 577 (712)
T KOG0283|consen 577 S 577 (712)
T ss_pred C
Confidence 4
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=233.57 Aligned_cols=277 Identities=18% Similarity=0.302 Sum_probs=234.1
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~ 100 (612)
.+-++|| ..+.+|++.+..|++|+..++.......-++..|+++.|+++|++||+|..+|.|.|||..+.+.+. .+.+
T Consensus 180 ~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~-~~~~ 257 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR-TLRG 257 (484)
T ss_pred hhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-cccC
Confidence 3457788 5668999999999999999999777666669999999999999999999999999999999988554 5555
Q ss_pred -cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 101 -LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 101 -~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
|...|-+++|. +..+.+++.++ .|..++....+.... +.+|...|..+.|++|+. .+|+|+.|+.+.|||..
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~---~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDG---KILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGL 331 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCC---cEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCC
Confidence 99999999998 55677777766 355566655444433 899999999999999999 59999999999999998
Q ss_pred CCeeeecccccccceEEEEECC-CCCeEEEEE--cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-
Q 007229 179 PFKFKLSHREHSNFVNCIRFSP-DGSKLISVS--SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS- 254 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~- 254 (612)
..+.+..+..|.+.|.+++|+| ....||+|+ .|+.|++||..+++.+..+ .....|.++.|++..+.|+++.
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceeeEEEcCCCCEEEEecC
Confidence 8889999999999999999999 456888865 4999999999999999999 7888999999999987777653
Q ss_pred -CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 255 -ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 255 -~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
.++.|.||+. .+.. ....+.+|...|..+
T Consensus 408 ~s~n~i~lw~~----ps~~----------------------------------------------~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 408 YSENQITLWKY----PSMK----------------------------------------------LVAELLGHTSRVLYL 437 (484)
T ss_pred CCCCcEEEEec----cccc----------------------------------------------eeeeecCCcceeEEE
Confidence 4678999998 4322 235667899999999
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
++++. +..+++|+.|.++++|++-..
T Consensus 438 a~SPd-g~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 438 ALSPD-GETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EECCC-CCEEEEecccCcEEeccccCC
Confidence 99842 899999999999999987654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-29 Score=223.11 Aligned_cols=230 Identities=17% Similarity=0.247 Sum_probs=163.8
Q ss_pred CCCEEEEec---CCEEEEEeCCC-C---ceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCce--e---e
Q 007229 29 KTDTILYCN---GRSVLIRYLDK-P---LHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFV--L---K 95 (612)
Q Consensus 29 d~~~l~~~~---~~~i~i~~~~~-~---~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~--~---~ 95 (612)
.+.++|+-. ++.+-|.-+.. | +.+..+.+|...|+.+.||| +..+||+++.|..|+||.+..+-. + .
T Consensus 42 S~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 42 SADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ccceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 344555554 45666666542 2 34556789999999999999 567899999999999999984422 1 1
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
..+.+.+-.+.++.|+|...-|++.+..+ .+.||+..+++.+..+.+|.+.|.++.|+.||. ++++.+.|+.|+||
T Consensus 122 ~~~g~~~~~vE~l~fHpTaDgil~s~a~g---~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~-llatscKdkqirif 197 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPTADGILASGAHG---SVYITDISTQKTAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIF 197 (1012)
T ss_pred eeecCCceEEEEeecccCcCceEEeccCc---eEEEEEcccCceeecccCCchhhhccccccCCc-eEeeecCCcceEEe
Confidence 12233344788999999776666655555 467778889999999999999999999999999 79999999999999
Q ss_pred eCCC-Ceeeecccccccc-eEEEEECCCCCeEEEEEcC----CcEEEEecCCC-CeeeeeeccCCccccEEEEEEecCCC
Q 007229 176 EGPP-FKFKLSHREHSNF-VNCIRFSPDGSKLISVSSD----RKGLIYDGKSG-EKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 176 d~~~-~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
|.+. ++.++...+|.+- =..+.|.-+-..|++.+.+ ..+++||.... ..+.++.. ...-.+.---|.||.+
T Consensus 198 DPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel--d~stGvLiPl~DpDt~ 275 (1012)
T KOG1445|consen 198 DPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL--DSSTGVLIPLYDPDTR 275 (1012)
T ss_pred CCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEe--ecccceEeeeecCCCc
Confidence 9764 5667777778652 3346677555577776654 67899998653 23333311 3344566667888888
Q ss_pred EEEEEe-CCCcEEEEEe
Q 007229 249 KVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 249 ~l~~~~-~dg~i~iw~~ 264 (612)
+|+.++ .+.++..+.+
T Consensus 276 llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 276 LLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred eEEEecCCcceEEEEEe
Confidence 766554 3556666665
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-30 Score=241.74 Aligned_cols=279 Identities=14% Similarity=0.192 Sum_probs=240.7
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeE-eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+.+..|. ..++++++ ++.|.+||..++..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..++++ .
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-~ 284 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-T 284 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-E
Confidence 4567778888 44566665 78999999999999888 999999999999998888999999999999999999994 5
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
..+.+|...+.++...+ .++++++.|. .+++|.++++..+..+.+|.++|.++..+ ++ ++++|+.|++|++|
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~---tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDN---TVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVW 356 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCc---eEEEEeccCcceEEEeccccccEEEEEec--CC-EEEEEecCceEEEE
Confidence 58889999999988754 4677777777 68999999999999999999999999999 44 69999999999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC-CeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG-EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
|..+++++.++.+|...|.++.+.+. +++++|+.|++|++||+++. +++..+ .+|..-+..+.+ .+++|++++
T Consensus 357 ~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl---~~h~~~v~~l~~--~~~~Lvs~~ 430 (537)
T KOG0274|consen 357 DPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL---QGHTSLVSSLLL--RDNFLVSSS 430 (537)
T ss_pred EhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh---cCCccccccccc--ccceeEecc
Confidence 99999999999999999999988765 89999999999999999999 888888 478877766655 478899999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
.|++|++||. .++++++.+... ....+..+......+++++.++.+.+||++.......
T Consensus 431 aD~~Ik~WD~----~~~~~~~~~~~~----~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 431 ADGTIKLWDA----EEGECLRTLEGR----HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred ccccEEEeec----ccCceeeeeccC----CcccEEEeecCcceEEEEecCCeeEEEecccCchhhh
Confidence 9999999999 999999998875 1234445555579999999999999999887654433
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-29 Score=192.56 Aligned_cols=289 Identities=19% Similarity=0.257 Sum_probs=225.8
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCC------CC----ce-----eeEeccCCCceEEEEECCCCCEEEEeeC
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLD------KP----LH-----VEFYGEHGYPVTVARYSPNGEWIASADV 79 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~------~~----~~-----~~~~~~h~~~v~~~~~s~d~~~las~~~ 79 (612)
+....|.+++|+|.|.+.|+++ ..+.+|--.. .+ ++ .+.-+.|.+.|.|.+|||+|++||+|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 3455789999999999999999 4666654321 11 11 1223468999999999999999999999
Q ss_pred cCeEEEeecCCCce----eeeeeeecCCCeEEEEECCC----CCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEE
Q 007229 80 SGSVRIWGTHNGFV----LKNEFKVLSGRIDDLQWSPD----GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVL 151 (612)
Q Consensus 80 d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~ 151 (612)
|.+|++--+....+ ...++.-|.+.|..++|..+ |..|++++.+... |.+-+-..|+..+.+.+|++.|.
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~--iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK--IYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce--EEEeecCCCCcceeecCCcccEE
Confidence 99999976654332 23467889999999999653 5677887776643 44445558999999999999998
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
++- +-++- ++++|+.|.+|++||++-..++.++.. .+..|.+++..|.|++|++|-.|....+||++.++.
T Consensus 188 aly-swn~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 188 ALY-SWNGA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEE-EecCc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 873 22333 899999999999999998887776532 235799999999999999999999999999999999
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (612)
++.+ ..|...|.++.|+|...++++++.|..|++-|+ .+.+.+.+
T Consensus 266 iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdl-----qgdla~el--------------------------- 310 (350)
T KOG0641|consen 266 IQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL-----QGDLAHEL--------------------------- 310 (350)
T ss_pred eeee---CCCccceeEEEeCCCceEEEEecccceEEEeec-----ccchhhcC---------------------------
Confidence 9999 489999999999999999999999999999998 23322221
Q ss_pred CCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
+......|...+..+.|.+. .-.+++.+.|.++.+|-+.
T Consensus 311 --------------~~~vv~ehkdk~i~~rwh~~-d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 --------------PIMVVAEHKDKAIQCRWHPQ-DFSFISSSADKTATLWALN 349 (350)
T ss_pred --------------ceEEEEeccCceEEEEecCc-cceeeeccCcceEEEeccC
Confidence 22334457788888888842 4567788889999998653
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=237.55 Aligned_cols=355 Identities=17% Similarity=0.241 Sum_probs=270.4
Q ss_pred CCCceE---EEEEC-CCCCEEEEeeCcCeEEEeecCCCce-----eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 58 HGYPVT---VARYS-PNGEWIASADVSGSVRIWGTHNGFV-----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 58 h~~~v~---~~~~s-~d~~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
|...|. ++..+ |.++||.||+.||.|++|++..... -...+..|...|+.++...+++.|++++.|. .
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt---T 96 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT---T 96 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc---e
Confidence 444454 44444 4677899999999999999875443 2456788999999999999999999999998 5
Q ss_pred EEEEEecCC--ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee--ee--------ccc-ccccceEE
Q 007229 129 VRAFMWDSG--TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF--KL--------SHR-EHSNFVNC 195 (612)
Q Consensus 129 i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~--------~~~-~~~~~v~~ 195 (612)
+.+|....+ -++.++..|.+.|.|++.-...+.++|+|+-|+.|.+||+.++.. +. .+. ++..+|++
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 677777655 578889999999999999444444899999999999999997732 21 233 78889999
Q ss_pred EEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEe
Q 007229 196 IRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 275 (612)
++.++.|..+++|+..+.+++||.++++.+..+ .+|...|..+..++||+.+++++.||+|++||+ ...+++.
T Consensus 177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkL---rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL----gqQrCl~ 249 (735)
T KOG0308|consen 177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL---RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL----GQQRCLA 249 (735)
T ss_pred eecCCcceEEEecCcccceEEeccccccceeee---eccccceEEEEEcCCCCeEeecCCCceEEeeec----cccceee
Confidence 999999999999999999999999999999998 499999999999999999999999999999999 6666665
Q ss_pred eeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEE
Q 007229 276 TFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 355 (612)
++. .|...|+++..+ +.-..+++|+.||.|..=
T Consensus 250 T~~----------------------------------------------vH~e~VWaL~~~-~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 250 TYI----------------------------------------------VHKEGVWALQSS-PSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred eEE----------------------------------------------eccCceEEEeeC-CCcceEEecCCCCcEEec
Confidence 543 466677777766 226899999999999999
Q ss_pred EcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeec
Q 007229 356 IRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES 433 (612)
Q Consensus 356 d~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (612)
|+++.......-..+.+|..+.. +.+.+.+++.|+.|+.|...-.
T Consensus 283 dl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~--------------------------------- 329 (735)
T KOG0308|consen 283 DLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD--------------------------------- 329 (735)
T ss_pred ccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc---------------------------------
Confidence 99986554444447777777777 3556688889999998875422
Q ss_pred cEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc
Q 007229 434 GVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD 513 (612)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (612)
..+++.+++.+ -+.+....+++..... ....++ ..+|..-+.-.|.+.+++-.
T Consensus 330 ----------------------~~l~~s~~~~~-~~T~~~~~~~~~~~tp---~~vi~G-g~ai~k~~mL~dkRhVlTkD 382 (735)
T KOG0308|consen 330 ----------------------IALSVSGDLDF-FSTDSNNHSCDLTNTP---DSVIPG-GAAIKKHAMLNDKRHVLTKD 382 (735)
T ss_pred ----------------------cccccCCCCCc-ccccCCCccccccCCC---ceeccC-chhhhhhhhhcCcceEeeec
Confidence 23444454444 3334444444432211 122222 22355555566888888888
Q ss_pred CCCeEEEEecCCccee
Q 007229 514 GNREAIVWDRVSKEVK 529 (612)
Q Consensus 514 ~d~~i~iwd~~~~~~~ 529 (612)
..|.+.+||+-....+
T Consensus 383 a~gnv~lwDIl~~~~~ 398 (735)
T KOG0308|consen 383 AKGNVALWDILACVKV 398 (735)
T ss_pred CCCCEEEEEeeeeeeh
Confidence 8889999988766553
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-30 Score=232.67 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=215.5
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEecc-CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGE-HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
++.|+++.|+++|++||+|. +|.|.|||.++.+.++.+.+ |...|-+++|. +..+.+|+.|+.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 67999999999999999998 89999999999999999998 99999999999 6689999999999999999888766
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee--cCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG--EDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~ 173 (612)
..+.+|...|..+.|++|+++||+++.|+ .+.||+.....++..+..|...|.+++|+|-...+||+|+ .|+.|+
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN---~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDN---VVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCcc---ceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 56889999999999999999999999998 4566666678899999999999999999998777899975 589999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEE--EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV--SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
+||..++..+..+. ....|..|.|++..+.|+++ ..++.|.||+..+.+.+..+ .+|...|..++++|||..++
T Consensus 372 fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l---~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 372 FWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL---LGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee---cCCcceeEEEEECCCCCEEE
Confidence 99999999888764 45679999999998777664 34778999999998888888 49999999999999999999
Q ss_pred EEeCCCcEEEEEe
Q 007229 252 TVSADKSAKVWEI 264 (612)
Q Consensus 252 ~~~~dg~i~iw~~ 264 (612)
+++.|.++++|++
T Consensus 448 t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 448 TGAADETLRFWNL 460 (484)
T ss_pred EecccCcEEeccc
Confidence 9999999999998
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-28 Score=190.29 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=222.6
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC------CCe---------eeecccccccceEEEEECCCCCeEEEEEc
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP------PFK---------FKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~------~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
....|.+++|+|.|. +.+.|+..+++++-... .+. ..+.-+.|.+.|.|.+|+|+|+++++|+.
T Consensus 31 dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 456789999999999 69999999999987422 111 11223568899999999999999999999
Q ss_pred CCcEEEEecCCCCeee--eeeccCCccccEEEEEEecC----CCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCcc
Q 007229 211 DRKGLIYDGKSGEKIG--EFSSEDGHHGSIYAVSWSPD----GKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSN 283 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~i~~~~~----~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 283 (612)
|.+|++...+...+.. .-.....|.+.|..++|..+ +..|++++. |..|.+-|. ..+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc----~~g------------ 173 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC----GRG------------ 173 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec----CCC------------
Confidence 9999987655432221 11112378999999999764 445555542 334444444 333
Q ss_pred ccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 284 AVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
.....+.+|.+.|.++-.-+ +-++++|+.|.+|++||++-+.++
T Consensus 174 ----------------------------------~~~~a~sghtghilalyswn--~~m~~sgsqdktirfwdlrv~~~v 217 (350)
T KOG0641|consen 174 ----------------------------------QGFHALSGHTGHILALYSWN--GAMFASGSQDKTIRFWDLRVNSCV 217 (350)
T ss_pred ----------------------------------CcceeecCCcccEEEEEEec--CcEEEccCCCceEEEEeeecccee
Confidence 23455677888887775446 899999999999999999877665
Q ss_pred eecee--cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecc
Q 007229 364 KLEKK--YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441 (612)
Q Consensus 364 ~~~~~--~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
..... |....
T Consensus 218 ~~l~~~~~~~gl-------------------------------------------------------------------- 229 (350)
T KOG0641|consen 218 NTLDNDFHDGGL-------------------------------------------------------------------- 229 (350)
T ss_pred eeccCcccCCCc--------------------------------------------------------------------
Confidence 54431 00000
Q ss_pred cceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEE
Q 007229 442 KVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 442 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
....|.++++.|.|++|++|-.|....+||++.+++ +..+..|+..|.++.|||...+|.+++.|..|++-
T Consensus 230 -------essavaav~vdpsgrll~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~iklt 300 (350)
T KOG0641|consen 230 -------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLT 300 (350)
T ss_pred -------ccceeEEEEECCCcceeeeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccceEEEe
Confidence 124688999999999999999999999999999988 78899999999999999999999999999999999
Q ss_pred ecCCcc---eeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 522 DRVSKE---VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 522 d~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
|++..- +.......|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 987532 2223445588999999999998889999999999999764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=211.66 Aligned_cols=339 Identities=19% Similarity=0.297 Sum_probs=258.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
.+++.-.+++++ .++...+.||.+.|..++-......+.+++.|.+.+||.+++|.++..+ .+|.+.|.++
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y---~GH~GSVNsi 196 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY---TGHTGSVNSI 196 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee---cccccceeeE
Confidence 366666666643 3455678899999999998887788999999999999999999999999 4999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecCCCCCeeE--eeeeccCccccceeeeeeeccCCEEEEE--EcCCEEEEEEcCCCC
Q 007229 242 SWSPDGKKVLTVSADKSAKVWEILEDGSGGRVI--KTFASSTSNAVEDMLVGCLWQNDHLITV--SLGGIISIFSASNLD 317 (612)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~ 317 (612)
.|++.+.++++++.|++-.||...-+-+..... ........ .+ +.-..+....+ ..|| ..-.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE--~e-----~sDe~~~d~d~~~~sD~-------~tiR 262 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE--EE-----HSDEHNRDTDSSEKSDG-------HTIR 262 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh--hh-----cccccccccccccccCC-------ceee
Confidence 999999999999999999999841100111100 00000000 00 00000000000 0000 1112
Q ss_pred CCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 318 KAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
.++..+.+|...|.+..|. . ++.+++++.|.+-.+||++++..+..+.+|+.
T Consensus 263 vPl~~ltgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~------------------------- 315 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETGEVVNILTGHDS------------------------- 315 (481)
T ss_pred eeeeeeeccccceEehhhhcC--cceeeeeeccccceeeeeccCceeccccCcch-------------------------
Confidence 3456788999999999988 5 88999999999999999999887776554433
Q ss_pred cCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEE
Q 007229 397 LCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHI 476 (612)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 476 (612)
..+-++-+|..+++++.+.|.+.++
T Consensus 316 -------------------------------------------------------ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 316 -------------------------------------------------------ELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred -------------------------------------------------------hccccccCCcceEEEEeccCceeEe
Confidence 4566778899999999999999999
Q ss_pred EEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee
Q 007229 477 YSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 477 ~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
||++ ..+.....+++|...|++..|..|. .+++|+.|.+|++||+++.......+. ..++++.++.+..++.+|.--
T Consensus 341 WDFR-eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 341 WDFR-EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred ccch-hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEecc
Confidence 9998 4445678899999999999998765 678999999999999999877655555 678999999999888999999
Q ss_pred cCcEEEEEEccCCCcceee-----eecccccCeeeEEEe---cCceEEEccCCCeEEEEEecc
Q 007229 557 IDTCVIIYEIGKPASSRIT-----IKNAHLGGVYGVAFM---DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 557 ~d~~i~iwd~~~~~~~~~~-----~~~~h~~~v~~~~~~---~~~~l~s~~~d~~i~~w~~~~ 611 (612)
++..|++||+.. ..+. .-++|...|.+++|. +-..|+++|-|..+.-|++.+
T Consensus 418 DNRqvRlfDlnG---~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 418 DNRQVRLFDLNG---NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCceEEEEecCC---CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 999999999986 3333 345899999999999 334599999999999999864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-29 Score=233.85 Aligned_cols=286 Identities=15% Similarity=0.140 Sum_probs=211.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee------------eeeeeecCCCeEEEEECC-CCCEEEEEeCCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL------------KNEFKVLSGRIDDLQWSP-DGLRIVACGDGK 124 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~ 124 (612)
|-..|.....++|+..+++++.+.....|+...+..+ ...+.+|.+.|.+++|+| ++++|++++.++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4456777778888777777777777777776544221 124678999999999999 889999999998
Q ss_pred CeeeEEEEEecCC-------ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEE
Q 007229 125 GKSFVRAFMWDSG-------TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIR 197 (612)
Q Consensus 125 ~~~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 197 (612)
.|++|+..++ +++..+.+|...|.+++|+|++..+|++++.|++|++||+.+++....+.+|...|.+++
T Consensus 99 ---tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 99 ---TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred ---EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 5777777643 357789999999999999998754799999999999999999999989999999999999
Q ss_pred ECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc-EEEEEEecCCCEEEEEe----CCCcEEEEEeecCCCCCe
Q 007229 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS-IYAVSWSPDGKKVLTVS----ADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 198 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~ 272 (612)
|+|++++|++++.|+.|++||+++++.+..+. +|.+. ...+.|.+++..+++++ .|+.|++||+ ....
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl----r~~~ 248 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT----RKMA 248 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC----CCCC
Confidence 99999999999999999999999999887773 56543 45678898888887765 4789999998 3322
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEe-cCCc
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSS-YDGA 351 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~ 351 (612)
.. ......+......+.+.+.+++++++++ .|+.
T Consensus 249 ~p---------------------------------------------~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 249 SP---------------------------------------------YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred Cc---------------------------------------------eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 11 0111112222222333334477888777 5999
Q ss_pred EEEEEcCCceeeeecee-cccceEEEEeeccEEEEecCCCeEEEEecC
Q 007229 352 IIKWIRGVGYSSKLEKK-YDARIKCLAAVEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~ 398 (612)
|++||+..+........ ...++..+++..++.+-.......+++.+.
T Consensus 284 Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 284 IRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALT 331 (493)
T ss_pred EEEEEeeCCceEEEeeccCCCCCcceEecccccccccceeeeEEEEec
Confidence 99999998876654332 445666777755544444444444555554
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=209.10 Aligned_cols=296 Identities=18% Similarity=0.268 Sum_probs=248.6
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
+.+.+.+|+.+|..++-......+.+++.+. .-.||..++++++..+.||.+.|.++.|++.+. ++++++.|++..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADh---TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taH 215 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADH---TARIWSLESGACLATYTGHTGSVNSIKFHNSGL-LLLTASGDETAH 215 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeeccccc---ceeEEeeccccceeeecccccceeeEEeccccc-eEEEccCCcchH
Confidence 6678889999999999887777888888887 458999999999999999999999999999998 799999999999
Q ss_pred EEe------CCC----------------------------------CeeeecccccccceEEEEECCCCCeEEEEEcCCc
Q 007229 174 FYE------GPP----------------------------------FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 174 ~wd------~~~----------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
||. ... ..++..+.+|...|.+..|...|+.+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 995 110 1123457789999999999999999999999999
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
..+||+++|+.+..+ .+|....+.++-+|..+++++.+.|.+.++||+ .
T Consensus 296 AnlwDVEtge~v~~L---tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF----R------------------------ 344 (481)
T KOG0300|consen 296 ANLWDVETGEVVNIL---TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF----R------------------------ 344 (481)
T ss_pred ceeeeeccCceeccc---cCcchhccccccCCcceEEEEeccCceeEeccc----h------------------------
Confidence 999999999999988 499999999999999999999999999999998 2
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
..-..+..++||...|++..|.. +..+++|+.|.+|++||+++...
T Consensus 345 ---------------------eaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRs----------- 390 (481)
T KOG0300|consen 345 ---------------------EAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRS----------- 390 (481)
T ss_pred ---------------------hhcceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccccC-----------
Confidence 11122456789999999999997 78899999999999999876542
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceE
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTV 453 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 453 (612)
.+.++....++
T Consensus 391 ---------------------------------------------------------------------plATIRtdS~~ 401 (481)
T KOG0300|consen 391 ---------------------------------------------------------------------PLATIRTDSPA 401 (481)
T ss_pred ---------------------------------------------------------------------cceeeecCCcc
Confidence 22233344568
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccCccccc--ceeeccccCceEEEEEcCCC--cEEEEEcCCCeEEEEecCCcc
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISGNTLTE--EMVLEKHRGAITVIQYSPDV--SMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~--~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~iwd~~~~~ 527 (612)
+.++++..+..+|.--.+..|++||+....+.. ...-++|...|+|++|..+- .-|++++-|..+.=|.+....
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 888999999999999999999999999877632 22456899999999998654 357888999999999987643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=203.35 Aligned_cols=272 Identities=16% Similarity=0.255 Sum_probs=224.0
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCC
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDG 268 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~ 268 (612)
....|.++.|+|.++.|++++.||++++||....+....+ .|..++.+++|.+ ...+++|+-||.|+.+|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~----~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl---- 82 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF----KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL---- 82 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe----ecCCceeeeeccC-CceEEEeccCceEEEEEe----
Confidence 4678999999999999999999999999999998887777 8999999999996 456899999999999999
Q ss_pred CCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEec
Q 007229 269 SGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 348 (612)
.+++. ..+..|..++.++.+... ...+++|++
T Consensus 83 n~~~~-----------------------------------------------~~igth~~~i~ci~~~~~-~~~vIsgsW 114 (323)
T KOG1036|consen 83 NTGNE-----------------------------------------------DQIGTHDEGIRCIEYSYE-VGCVISGSW 114 (323)
T ss_pred cCCcc-----------------------------------------------eeeccCCCceEEEEeecc-CCeEEEccc
Confidence 44332 234458899999999822 688999999
Q ss_pred CCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEE
Q 007229 349 DGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELAL 428 (612)
Q Consensus 349 dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (612)
|++|++||.+......... ....|.++...++.|++|+.+..+.+||+++....
T Consensus 115 D~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~------------------------- 168 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP------------------------- 168 (323)
T ss_pred CccEEEEeccccccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccccch-------------------------
Confidence 9999999999855544444 55699999999999999999999999999876643
Q ss_pred EEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc--ccceeeccccC---------ce
Q 007229 429 VSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL--TEEMVLEKHRG---------AI 497 (612)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~---------~i 497 (612)
...++-..+..+.|+++-|++.-.++++-||.|.+=.++.... .....++.|.. +|
T Consensus 169 -------------~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 169 -------------FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred -------------hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 1122233567899999999998899999999998877765521 22345666643 69
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec
Q 007229 498 TVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557 (612)
Q Consensus 498 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 557 (612)
++|+|+|-...||||+.||.|.+||+.+.+.+ ..+......|.+++|+.||..||+++.
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL-KQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcchhhh-hhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999999999999887 445556678999999999999999874
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=202.70 Aligned_cols=308 Identities=15% Similarity=0.178 Sum_probs=222.5
Q ss_pred EEEEeCCCCce-----eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-----eeeeeeecCCCeEEEEE
Q 007229 41 VLIRYLDKPLH-----VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-----LKNEFKVLSGRIDDLQW 110 (612)
Q Consensus 41 i~i~~~~~~~~-----~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~ 110 (612)
..-|+.+.+.. +..|++|.+.|++++||.||++||+++.|++|+||++.+-.. +...+ .-+..+.++|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dhpT~V~F 140 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDHPTRVVF 140 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCCceEEEE
Confidence 44455544433 234789999999999999999999999999999999987532 11111 1235788999
Q ss_pred CCCCCEEEEEeCCCCeeeEEEEEec---CCceee---------eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 111 SPDGLRIVACGDGKGKSFVRAFMWD---SGTTVG---------DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 111 s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
+||-+-+++....++ .+.++-.. .|.... --+.|...+..+-....+.+ +++++.|..|.+|+++
T Consensus 141 apDc~s~vv~~~~g~--~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-imsas~dt~i~lw~lk 217 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGN--KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-IMSASLDTKICLWDLK 217 (420)
T ss_pred CCCcceEEEEEccCC--EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceE-EEEecCCCcEEEEecC
Confidence 999988877766554 35555554 222111 12357777888888888885 9999999999999999
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC---C--CeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS---G--EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
|+.+..+......-+..+.||+|+++++++.-..+++|.+-- | +.+.......+|...|..++|+++.+.+++.
T Consensus 218 -Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 218 -GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 888888777777778889999999999999999999998632 2 1222222245999999999999999999999
Q ss_pred eCCCcEEEEEeecC---CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 254 SADKSAKVWEILED---GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 254 ~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
+.||++++||.+-. ++....++....+........+.-....+..+++.+....+.+|..+.++.....-..|...|
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~I 376 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTI 376 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCce
Confidence 99999999998522 233334444422221122222222222366677788889999999888777666677899999
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
.+++|.+. ++++++++ |..+++..
T Consensus 377 s~is~~~~-g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 377 SSISYSSD-GKYIATCG-DRYVRVIR 400 (420)
T ss_pred eeEEecCC-CcEEeeec-ceeeeeec
Confidence 99999931 78888876 56677664
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=213.42 Aligned_cols=242 Identities=15% Similarity=0.189 Sum_probs=209.3
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceee----E------------e--ccCCCceEEEEECCCCCEEEE
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVE----F------------Y--GEHGYPVTVARYSPNGEWIAS 76 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~----~------------~--~~h~~~v~~~~~s~d~~~las 76 (612)
.|+-.+++++++||+++.+.++ +++|.=|++.+++..+ . . ++|...|.+++.|+||+|||+
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 4677899999999999999998 8999999988776331 0 1 278899999999999999999
Q ss_pred eeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEc
Q 007229 77 ADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFK 156 (612)
Q Consensus 77 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (612)
|+.|..|.||+..+.+. .+.+.+|.+.|.+++|-.....|.+++.+. .+.+|+.+....+.++-+|++.|..+...
T Consensus 220 gg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Dr---svkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADR---SVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred cCCCceEEEecCcccch-hhcccccccceeeeeeecCccceeeeecCC---ceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999984 457999999999999999989999999998 57899999999999999999999999998
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC----
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---- 232 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---- 232 (612)
..++ .+-.|+.|+++++|++.. +....+.+|.+.+.|++|-.+. .+++|+.+|.|.+|++.+.+++.......
T Consensus 296 ~reR-~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 296 SRER-CVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred cccc-eEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeeccccccC
Confidence 8887 566677999999999944 4444677899999999998654 68999999999999999998887764321
Q ss_pred -----CccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 233 -----GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 233 -----~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+...|++++..|..+++++|+.+|.|++|.+
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 12237999999999999999999999999999
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-27 Score=216.92 Aligned_cols=500 Identities=15% Similarity=0.163 Sum_probs=317.6
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCC---CEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG---EWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~---~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
..-.||+|+++++.+.++.|.||...++++++.+.+|..+++.+.+.|.. .++.+++.||.|++||...+. +.+.+
T Consensus 20 ~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~-Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE-LLKTF 98 (792)
T ss_pred cccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE-EEEEE
Confidence 34679999999999999999999999999999999999999999999854 477799999999999999998 44444
Q ss_pred eecCCCeEEEEECC---CCCEEEEEeCCCCeeeEEEEEecC-------------CceeeeeccCCceEEEEEEcCCCCEE
Q 007229 99 KVLSGRIDDLQWSP---DGLRIVACGDGKGKSFVRAFMWDS-------------GTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 99 ~~~~~~i~~~~~s~---~~~~l~~~~~~~~~~~i~i~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
.. ..++..+.+.| +-...+..+.+... .+.....+. ..+...+.+|.. -.++.+++.+.+
T Consensus 99 ~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~-~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~- 174 (792)
T KOG1963|consen 99 DN-NLPVHALVYKPAQADISANVYVSVEDYS-ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEF- 174 (792)
T ss_pred ec-CCceeEEEechhHhCccceeEeecccce-eeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceE-
Confidence 43 33444444433 11122222222110 000000111 111112233333 467888888873
Q ss_pred EEEeecCCeEEEEeCCCCeeeec----ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCeeeeeeccCCcccc
Q 007229 163 IATCGEDFLVNFYEGPPFKFKLS----HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGS 237 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~ 237 (612)
...-.+..+.+|+.+....... -..|.-.+++.++||++++++++..||.|.+|.--. ...-.......-|..+
T Consensus 175 -~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 175 -KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred -EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 3334455688998877542111 234777799999999999999999999999997432 1111111112367889
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
|.+++|+++|.+|++|+..|.+.+|.+ ++++ ++|
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~----~T~~--kqf---------------------------------------- 287 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQL----ETGK--KQF---------------------------------------- 287 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEee----cCCC--ccc----------------------------------------
Confidence 999999999999999999999999999 5554 222
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-----------cccceEEEEe--eccEEE
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-----------YDARIKCLAA--VEEVIF 384 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----------~~~~i~~~~~--~~~~l~ 384 (612)
++.-..+|..+.++ +++...+....|+.|.+....+......... ...-...++. ..+.++
T Consensus 288 -----LPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 288 -----LPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -----ccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 22244567777777 2266777777788888876644333222111 1222233333 346677
Q ss_pred EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCe
Q 007229 385 TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSE 464 (612)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 464 (612)
..+..+.+++||+-+...... +-+...+. ..+. ..+.-.+++++.+..|.+
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~---------------------~~v~~~n~----~~~~----~n~~v~itav~~~~~gs~ 412 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYK---------------------LQVCDENY----SDGD----VNIQVGITAVARSRFGSW 412 (792)
T ss_pred ecCCCceEEEEeccccceeee---------------------EEEEeecc----cCCc----ceeEEeeeeehhhccceE
Confidence 788888888888876654300 00000000 0000 012235788888888999
Q ss_pred EEEEe--------cC--CeEEEEEccCccc---ccceeeccccCceEEEEEcC--CCcEEEEEcCCCeEEEEecCCccee
Q 007229 465 AIVGG--------QN--GKLHIYSISGNTL---TEEMVLEKHRGAITVIQYSP--DVSMFASADGNREAIVWDRVSKEVK 529 (612)
Q Consensus 465 l~~~~--------~d--g~v~i~d~~~~~~---~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~i~iwd~~~~~~~ 529 (612)
+++.- .| -.+++|....... ........|...+...+|.+ ....+++++.||.++||-+...+.+
T Consensus 413 maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 413 MATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred EEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 98863 23 3678887754432 11233456777766666654 2338999999999999988433221
Q ss_pred ---------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe---cCceEEE
Q 007229 530 ---------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM---DDFNVVS 597 (612)
Q Consensus 530 ---------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~l~s 597 (612)
...-..|..++++++|+.||..|+. +.|++|.+||..+.. .+......-..++..+.|. .....+.
T Consensus 493 ~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (792)
T KOG1963|consen 493 YKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKN-ELLCTEGSRNWPIAELLFTAQTQNDGALV 570 (792)
T ss_pred CcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChh-hhhccccccccchHhHhhhccccccccee
Confidence 1112237889999999999976655 567889999998833 4444433333345555554 2233444
Q ss_pred ccCCCeEEEEEec
Q 007229 598 SGEDACIRVWRLA 610 (612)
Q Consensus 598 ~~~d~~i~~w~~~ 610 (612)
....+.+.+|++-
T Consensus 571 ~~~~~~l~~WNll 583 (792)
T KOG1963|consen 571 HATQQRLSVWNLL 583 (792)
T ss_pred eccCceEehHhhh
Confidence 4556778888874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=197.63 Aligned_cols=246 Identities=16% Similarity=0.267 Sum_probs=209.4
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC-EEEEEeecCCeEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP-FRIATCGEDFLVNF 174 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~ 174 (612)
..+..|.+.|++++. ++.++|+++.|. .|.||+......+..+-.|.+.|+++.|.+.-. .-|++|+.||.|.+
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGssDe---tI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSSDE---TIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCCCC---cEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 356689999999998 588999999998 689999999999999999999999999998763 13999999999999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
|+....+++.++++|.+.|+.++++|.+++.++.+.|+.++.||+-.|+.-... .-......+.|+|.|.+++.++
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~----~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL----NLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee----ccCCcceeeEEcCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999887776 3334445599999999998887
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.+ .|-+|.+ ++......+..+ ..........++.+++|..++.+.+||... ..+...+.+|...|.++.
T Consensus 188 ~~-~i~i~q~----d~A~v~~~i~~~-----~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 188 RN-KIDIYQL----DNASVFREIENP-----KRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIA 256 (362)
T ss_pred cc-EEEEEec----ccHhHhhhhhcc-----ccceeeeecCCceEEEecCCceEEEeccCC-CccceeeecchhheeeeE
Confidence 76 5899998 666655554443 123333344588999999999999999655 778889999999999999
Q ss_pred EE-ecCCcEEEEEecCCcEEEEEcCCce
Q 007229 335 AL-KISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 335 ~~-~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
+. ++.+.+|++++.||.|++||++...
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEccccc
Confidence 66 6667899999999999999998763
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=226.20 Aligned_cols=242 Identities=16% Similarity=0.207 Sum_probs=209.2
Q ss_pred CCCCcee---EEEEcc-CCCEEEEec-CCEEEEEeCCCCc------eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEE
Q 007229 16 TERGRGI---LISGNP-KTDTILYCN-GRSVLIRYLDKPL------HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVR 84 (612)
Q Consensus 16 ~~~~~v~---~~~~s~-d~~~l~~~~-~~~i~i~~~~~~~------~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~ 84 (612)
.++..+. ++..++ .+++|.+++ ||.|++|+...-. .+..++.|...|+.++...+|+.|+++|.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3454555 555554 566688888 9999999986322 3566889999999999999999999999999999
Q ss_pred EeecCCCc-eeeeeeeecCCCeEEEEE-CCCCCEEEEEeCCCCeeeEEEEEecCC--ceee--------eec-cCCceEE
Q 007229 85 IWGTHNGF-VLKNEFKVLSGRIDDLQW-SPDGLRIVACGDGKGKSFVRAFMWDSG--TTVG--------DFD-GHSRRVL 151 (612)
Q Consensus 85 iwd~~~~~-~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~~~~~~~i~i~~~~~~--~~~~--------~~~-~~~~~v~ 151 (612)
+|+...+. .....+..|...|.|+++ .++...+|++|-++ .|.+|+.+++ +.+. .+. ++..+|+
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~---~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR---KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCc---cEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 99998773 245688899999999999 88888999999888 4567777655 2222 334 8899999
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE 231 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 231 (612)
+++.++.|. ++++|+..+.+++||.++++.+..++||...|.++..++||..+++++.||+|++||+...+++.++.
T Consensus 176 SLA~N~t~t-~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-- 252 (735)
T KOG0308|consen 176 SLAMNQTGT-IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-- 252 (735)
T ss_pred eeecCCcce-EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--
Confidence 999999996 79999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.|...|+++..+|+-.++++|+.||.|..=|+
T Consensus 253 -vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 253 -VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred -eccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 78889999999999999999999999999888
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=225.21 Aligned_cols=233 Identities=12% Similarity=0.115 Sum_probs=185.0
Q ss_pred EccCCCEEEEe----c---CCEEEEEeCCCCceeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce----
Q 007229 26 GNPKTDTILYC----N---GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV---- 93 (612)
Q Consensus 26 ~s~d~~~l~~~----~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~---- 93 (612)
+...++++|.. + .+.|.+|+......+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 34445566652 1 358899998887788889999999999999996 78999999999999999986421
Q ss_pred ---eeeeeeecCCCeEEEEECCCCCEE-EEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 94 ---LKNEFKVLSGRIDDLQWSPDGLRI-VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 94 ---~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
....+.+|...|.+++|+|++..+ ++++.++ .+++|+..+++.+..+. |...|.+++|+|+|. +|++++.|
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg---tIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s~D 188 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS---FVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVG 188 (568)
T ss_pred cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC---eEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEecC
Confidence 223577899999999999999865 5777777 57888888888777776 668899999999999 58999999
Q ss_pred CeEEEEeCCCCeeeecccccccceEE-----EEECCCCCeEEEEEcCC----cEEEEecCC-CCeeeeeeccCCccccEE
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNC-----IRFSPDGSKLISVSSDR----KGLIYDGKS-GEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~~v~ 239 (612)
+.|++||+++++.+..+.+|.+.+.+ ..|++++++|++++.|+ +|++||+++ ++++..+. ...+.+.+.
T Consensus 189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~ 267 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLI 267 (568)
T ss_pred CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceE
Confidence 99999999999999899999876543 34568999999988774 799999985 55555542 113333344
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.....+++.++++|+.|+.|++|++
T Consensus 268 p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EeeeCCCCCEEEEEECCCeEEEEEc
Confidence 4444556888999999999999999
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-28 Score=216.56 Aligned_cols=459 Identities=17% Similarity=0.191 Sum_probs=299.2
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
.|..++|-|||..|+.+.++.+.+||.+.|.+++.+++|.+.|.|++||.||+++|+|+.|..|.+|+-+-... .-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---eee
Confidence 78899999999999999999999999999999999999999999999999999999999999999998765432 234
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC
Q 007229 100 VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 100 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
.|...|.|+.|.|-...|++++-.. .-.|....+--.-.....++.+++|..||++ ++.|-.+|+|.+-+...
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsd------FglWS~~qK~V~K~kss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSD------FGLWSPEQKSVSKHKSSSRIICCSWTNDGQY-LALGMFNGTISIRNKNG 163 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhh------ccccChhhhhHHhhhhheeEEEeeecCCCcE-EEEeccCceEEeecCCC
Confidence 6899999999999999999998775 3455533322222234568899999999995 99999999999987433
Q ss_pred Cee--eecccccccceEEEEECCCC-----CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 180 FKF--KLSHREHSNFVNCIRFSPDG-----SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 180 ~~~--~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
.+. +..-.|.+.+|.+++|+|.. ..+++.....++.++.+. |+.+..- ..-.-...++.+.++|.+++.
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~---r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD---RALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc---ccCCCCchhheeccCCcEEEE
Confidence 222 22234578899999999963 467888888888888864 5555433 144556679999999999999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
|+.|+.+.+|.- .+-.+.+... ....|+.
T Consensus 240 GGsdk~L~~fTR-----~GvrLGTvg~----------------------------------------------~D~WIWt 268 (1081)
T KOG1538|consen 240 GGSDKQLSLFTR-----DGVRLGTVGE----------------------------------------------QDSWIWT 268 (1081)
T ss_pred ccCCCceEEEee-----cCeEEeeccc----------------------------------------------cceeEEE
Confidence 999999999985 4444433221 2234444
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeee-------------------ceecccceEE------EEeeccEEEEec
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKL-------------------EKKYDARIKC------LAAVEEVIFTAG 387 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------------------~~~~~~~i~~------~~~~~~~l~~~~ 387 (612)
++..+ +++.++.|+.||+|..|++.......+ .......|.| ++.-.+.+++--
T Consensus 269 V~~~P-NsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQL 347 (1081)
T KOG1538|consen 269 VQAKP-NSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQL 347 (1081)
T ss_pred EEEcc-CCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecc
Confidence 44442 256666677777776665542211100 0001112221 222233333333
Q ss_pred CCCeEEEEecCCCCCCccceeccCC--CcceeeecCCCCcEEEEEeeccEEEee-cccceeeecccceEEEEEE--cc-C
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGS--QPLDLSLALSSPELALVSTESGVILLD-SLKVMSKIDLGFTVTACAI--AP-D 461 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--s~-~ 461 (612)
. .+|.+|.+.++........-... .....++----...++...+..+.-++ .+-..++....+-|.-+.+ -| .
T Consensus 348 p-eki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~g 426 (1081)
T KOG1538|consen 348 P-EKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPPG 426 (1081)
T ss_pred c-ceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCCC
Confidence 2 35666766655433211110000 011111111111233333334444333 1111111111222222222 23 3
Q ss_pred CCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccccee
Q 007229 462 GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARIN 541 (612)
Q Consensus 462 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 541 (612)
..-|++|..||.|.-.=+++.-+ ..+......|.|+..+...+.||+..+.++..++|+.+++.+.+ ...++
T Consensus 427 REgL~vGlknGqV~kiF~dN~~P---iLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~Q-----Epg~n 498 (1081)
T KOG1538|consen 427 REGLLVGLKNGQVLKIFVDNLFP---ILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQ-----EPGAN 498 (1081)
T ss_pred cceeEEEecCCcEEEEEecCCch---hheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEee-----cCCCc
Confidence 45688899998766544444333 22344556899999999999999999999999999999998753 33578
Q ss_pred EEEecCCC-cEEE
Q 007229 542 CLAWSPSS-TMVA 553 (612)
Q Consensus 542 ~~~~s~~~-~~l~ 553 (612)
+++|+... .+|+
T Consensus 499 SV~wNT~~E~Mlc 511 (1081)
T KOG1538|consen 499 SVAWNTQCEDMLC 511 (1081)
T ss_pred eEEeeccccceEE
Confidence 89998643 3444
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=220.91 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=235.2
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee-eeeeecCCCeEE-EEECC-CCCEEEEEeCCCC
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK-NEFKVLSGRIDD-LQWSP-DGLRIVACGDGKG 125 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~-~~~s~-~~~~l~~~~~~~~ 125 (612)
.+..+.+.||...|..+++.+.. .++++|+||++++|+-...+.+. ..+.+|.+.|.. ++|-+ ++-+|++++.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~- 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT- 81 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc-
Confidence 45667899999999999877665 89999999999999998776554 456678888877 88886 445688888888
Q ss_pred eeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE
Q 007229 126 KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 126 ~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 205 (612)
++.++..+...++..+.+|...|.++....++. +++|+.|.++++|.. +++...+++|+..|.+++.-|++ .+
T Consensus 82 --~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 82 --TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred --eEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cE
Confidence 567777789999999999999999999888874 999999999999975 45556699999999999999988 78
Q ss_pred EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 285 (612)
++|+.|.+|++|.- ++.+.++ .+|...|..+++.+++. +++++.||.|++|++ +++.+
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf---~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-----~ge~l----------- 212 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTF---SGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-----DGEVL----------- 212 (745)
T ss_pred EeccCcceeeeccC--Cchhhhh---ccchhheeeeEEecCCC-eEeecCCceEEEEec-----cCcee-----------
Confidence 99999999999974 7788888 48999999999998754 889999999999997 44444
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
....+|..-+.++... + ++.++++++|+++++|+.. .+.+
T Consensus 213 -----------------------------------~~~~ghtn~vYsis~~~~--~~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 213 -----------------------------------LEMHGHTNFVYSISMALS--DGLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred -----------------------------------eeeeccceEEEEEEecCC--CCeEEEecCCceEEEeecC--ceEE
Confidence 3445688888888844 5 7899999999999999887 4444
Q ss_pred eceecccceEEEEe-eccEEEEecCCCeEEEEecCCCCC
Q 007229 365 LEKKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLCEGEC 402 (612)
Q Consensus 365 ~~~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~~~~~ 402 (612)
........++++.. .++-+++|+.||.|++|.....+.
T Consensus 254 ~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEecCccceEEEEEeeCCCEEEeccCceEEEEEeccccc
Confidence 44435558888888 688899999999999998875543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=210.33 Aligned_cols=294 Identities=20% Similarity=0.234 Sum_probs=226.5
Q ss_pred EEEEEecCCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE
Q 007229 129 VRAFMWDSGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
+.+|+..+|....++++. ...-.++..-. ..|++++-.....+.+|.+..........--.++|.+++-+|+|.+|+.
T Consensus 20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~a 98 (476)
T KOG0646|consen 20 CIVWDLRTGTSLLQYKGSYLAQAASLTALN-NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLA 98 (476)
T ss_pred eeEEecCCCceeEEecCcccccchhhhhhc-hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEe
Confidence 567777788888888765 22222222221 2455666666678999998776655544445678999999999999999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
|+..|.|++|.+.+|..+..+ .+|-..|+++.|+.||.+|++++.||.|.+|.+.. .+..
T Consensus 99 g~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------lv~a----------- 158 (476)
T KOG0646|consen 99 GTISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------LVSA----------- 158 (476)
T ss_pred ecccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------eccc-----------
Confidence 889999999999999999988 49999999999999999999999999999999821 0000
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe-cCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK-ISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
.. ....++...+..|.-+|+++.... .....+++++.|.++++||+..+.....
T Consensus 159 ---------------~~---------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt- 213 (476)
T KOG0646|consen 159 ---------------DN---------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT- 213 (476)
T ss_pred ---------------cc---------CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE-
Confidence 00 113456677889999999998883 2467899999999999998877644332
Q ss_pred eecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceee
Q 007229 367 KKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSK 446 (612)
Q Consensus 367 ~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (612)
T Consensus 214 -------------------------------------------------------------------------------- 213 (476)
T KOG0646|consen 214 -------------------------------------------------------------------------------- 213 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc--------------cccceeeccccC--ceEEEEEcCCCcEEE
Q 007229 447 IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT--------------LTEEMVLEKHRG--AITVIQYSPDVSMFA 510 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~--------------~~~~~~~~~~~~--~i~~~~~s~~~~~l~ 510 (612)
+..+..+.+++++|-++.+++|+++|.|.+.++.... ......+.+|.+ +|+|++++-||.+|+
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 2234468889999999999999999998888775322 123456778888 999999999999999
Q ss_pred EEcCCCeEEEEecCCcceeeecccccccceeEEEecCCC
Q 007229 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS 549 (612)
Q Consensus 511 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 549 (612)
+|+.||.++|||+.+.+++ +.+....++|+-+.+.|-.
T Consensus 294 SGd~dg~VcvWdi~S~Q~i-Rtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCI-RTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchHHHH-HHHhhhccccceeEeeccc
Confidence 9999999999999999987 4444467899999996643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=197.46 Aligned_cols=300 Identities=18% Similarity=0.222 Sum_probs=206.2
Q ss_pred cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee--eeeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEE
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI--GEFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKV 261 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i 261 (612)
.+++|...|++++|+.||++|++++.|+.|++|++++.... ..+. ..-.-+-.+.+.|.||.+-++... ...++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh-ccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 47899999999999999999999999999999998864321 1111 111223568899999987666554 4457999
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
|.+....+.+-...... || ....-..|.-.+..+-.. .+..
T Consensus 160 yk~~K~~dG~~~~~~v~--------------------------------~D------~~~f~~kh~v~~i~iGiA-~~~k 200 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVH--------------------------------ID------NLEFERKHQVDIINIGIA-GNAK 200 (420)
T ss_pred EEeeecccCCCCccccc--------------------------------cc------ccccchhcccceEEEeec-CCce
Confidence 98843222111110000 00 001122344455554444 2278
Q ss_pred EEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecC
Q 007229 342 TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421 (612)
Q Consensus 342 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (612)
++.+++.|..|.+|++.. +...... +.
T Consensus 201 ~imsas~dt~i~lw~lkG-q~L~~id-------------------------------tn--------------------- 227 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLKG-QLLQSID-------------------------------TN--------------------- 227 (420)
T ss_pred EEEEecCCCcEEEEecCC-ceeeeec-------------------------------cc---------------------
Confidence 888999999999998873 3222110 00
Q ss_pred CCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEcc---Ccc---cccceeeccccC
Q 007229 422 SSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSIS---GNT---LTEEMVLEKHRG 495 (612)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~---~~~---~~~~~~~~~~~~ 495 (612)
...-+..++||+|+++++++---.|++|.+- .|. ......+.+|..
T Consensus 228 ----------------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 228 ----------------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred ----------------------------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 0123557899999999999988889999873 232 234567899999
Q ss_pred ceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee------eec----ccccccceeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 496 AITVIQYSPDVSMFASADGNREAIVWDRVSKEVK------LNN----MLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~----~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
.|..++|||+.+.+++.+.||+++|||+.-.... ++. +....+....++.+|+|+.||.+. ...++++.
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~ 358 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFA 358 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEE
Confidence 9999999999999999999999999997532211 011 111223344899999999988765 45699999
Q ss_pred ccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEE
Q 007229 566 IGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 566 ~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~ 608 (612)
.+++. ..-.....|...|.+|+|+ +|++++++| |..+++..
T Consensus 359 se~g~-~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 359 SEDGK-DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cccCc-cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 99843 4444456799999999999 999999988 66677754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=225.22 Aligned_cols=250 Identities=15% Similarity=0.202 Sum_probs=190.1
Q ss_pred eeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCC-CCEEEEEeCCCCeeeEEEEEecCC--------ceeeeeccCC
Q 007229 77 ADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD-GLRIVACGDGKGKSFVRAFMWDSG--------TTVGDFDGHS 147 (612)
Q Consensus 77 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~i~i~~~~~~--------~~~~~~~~~~ 147 (612)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +.+|++++.++ .+++|+..++ .++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~-~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dg---tIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-PVIKLKGHTSSILDLQFNPCFSEILASGSEDL---TIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCc-eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCCccccccccceEEeecCC
Confidence 5678899999988765 45578899999999999997 78999999988 5677777643 2345688999
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 227 (612)
..|.+++|+|++.+++++++.|++|++||+.+++....+. |...|.+++|+|+|++|++++.|+.|++||+++++.+..
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 9999999999998778899999999999999998777765 567899999999999999999999999999999998887
Q ss_pred eeccCCccccEEE-----EEEecCCCEEEEEeCCC----cEEEEEeecCCCC-CeeEeeeeccCccccceeeeeeeccCC
Q 007229 228 FSSEDGHHGSIYA-----VSWSPDGKKVLTVSADK----SAKVWEILEDGSG-GRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 228 ~~~~~~~~~~v~~-----i~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
+ .+|.+.+.. ..|++++.++++++.|+ +|++||+ .. ..++..+...
T Consensus 205 l---~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl----r~~~~pl~~~~ld----------------- 260 (568)
T PTZ00420 205 F---HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL----KNTTSALVTMSID----------------- 260 (568)
T ss_pred E---ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC----CCCCCceEEEEec-----------------
Confidence 7 367765433 23458889999988774 7999998 32 3333322211
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-cccceEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-YDARIKCL 376 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~ 376 (612)
.+.+.+. ..+.+.++.++++|..|+.|++|++..+....+... +..+..++
T Consensus 261 ---------------------------~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 261 ---------------------------NASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSF 312 (568)
T ss_pred ---------------------------CCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccce
Confidence 1111111 112233478899999999999999987754443322 55677778
Q ss_pred EeeccEE
Q 007229 377 AAVEEVI 383 (612)
Q Consensus 377 ~~~~~~l 383 (612)
++.+++.
T Consensus 313 ~f~Pkr~ 319 (568)
T PTZ00420 313 GFLPKQI 319 (568)
T ss_pred EEccccc
Confidence 7755443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=219.93 Aligned_cols=285 Identities=15% Similarity=0.227 Sum_probs=235.6
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCcee--eEeccCCCceEE-EEECC-CCCEEE
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHV--EFYGEHGYPVTV-ARYSP-NGEWIA 75 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~--~~~~~h~~~v~~-~~~s~-d~~~la 75 (612)
||.+.++.... .|...|..+++.+.. .++.++ ++++++|+-...+.+ ..+.+|.+-|.+ ++|-+ |+-.|+
T Consensus 1 ~~~Y~ls~~l~----gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 1 MPQYKLSHELE----GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV 75 (745)
T ss_pred CCcceeEEEec----cCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE
Confidence 66677666554 566788888877766 556665 899999998655443 447788888888 88886 556799
Q ss_pred EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEE
Q 007229 76 SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEF 155 (612)
Q Consensus 76 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~ 155 (612)
+|+.|.+|.+|...+.. ....+.+|+..|.++....++. +++++-|. ++..|..++....+++|+..|+++++
T Consensus 76 ~g~~D~~i~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~-----TakvW~~~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT-LISGSWDS-----TAKVWRIGELVYSLQGHTASVWAVAS 148 (745)
T ss_pred eecccceEEEEecCCCC-chhhhhccccceeeeecCCcCc-eEeccccc-----ceEEecchhhhcccCCcchheeeeee
Confidence 99999999999999998 4458999999999999998888 99999998 57788888888999999999999999
Q ss_pred cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 156 KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 156 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
-|++ .++||+.|.+|++|.- ++.+.++.+|.+.|+.+++-+++. +++++.||.|+.|++ +|+.+.+. .+|.
T Consensus 149 l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~---~ght 219 (745)
T KOG0301|consen 149 LPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEM---HGHT 219 (745)
T ss_pred cCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeee---eccc
Confidence 9998 5999999999999986 778889999999999999998764 889999999999998 77777777 4999
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
.-++++....++..++++++|+++++|+. . ++.+.+..+.
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~----~--e~~q~I~lPt---------------------------------- 259 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKK----D--ECVQVITLPT---------------------------------- 259 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeec----C--ceEEEEecCc----------------------------------
Confidence 99999998888889999999999999997 3 5555554332
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
..++++.+.. +.-+++|+.||.|++|.....
T Consensus 260 ------------tsiWsa~~L~--NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 260 ------------TSIWSAKVLL--NGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ------------cceEEEEEee--CCCEEEeccCceEEEEEeccc
Confidence 2455555555 567888888888888876643
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-25 Score=206.41 Aligned_cols=241 Identities=19% Similarity=0.217 Sum_probs=207.7
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC-ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP-LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.|.+.-+.++|.|+|++|.+++ ++.|++|+.... +....+.-|...|.+++.... ++++++.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~--~f~~~s~~~tv~~y~fps~~- 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN--HFLTGSEQNTVLRYKFPSGE- 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc--ceEEeeccceEEEeeCCCCC-
Confidence 4667788999999999999988 899999987765 444545557788887776544 89999999999999999887
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
....+....-++.+++|+.+|+++|.++++. .+.+...++......+++|.++|.++.|+|++. +||+.+-||.|+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~---~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~ 163 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDT---AVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQ 163 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCce---eEEEEeccccchheeecccCCceeeeeEcCCCC-EEEEEecCceEE
Confidence 3446666778999999999999999999998 568888888999999999999999999999999 599999999999
Q ss_pred EEeCCCCeeeeccccc--------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 174 FYEGPPFKFKLSHREH--------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
+||+.++.+..++.+- ...+..++|+|++..++..+.|+.|++|+..+.+....+... .+...+..++|+|
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSP 242 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-ccccceEEEEEcC
Confidence 9999999888776531 345778999999888888899999999999999988888643 4445599999999
Q ss_pred CCCEEEEEeCCCcEEEEEe
Q 007229 246 DGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~ 264 (612)
+|+|||+++.+|.|.+||.
T Consensus 243 nG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNV 261 (933)
T ss_pred CCcEEeeeccCCcEEEEec
Confidence 9999999999999999999
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=193.65 Aligned_cols=272 Identities=18% Similarity=0.258 Sum_probs=208.5
Q ss_pred ccccceEEEEECC-CCCeEEEEEcCCcEEEEecCC-CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 188 EHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 188 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..++.|.+++||| ...++++++.|++||+|+++. |....+. ...|.++|.+++|+.||..+++++.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka--~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL- 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA--QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL- 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh--hhccCCCeEEEEEccCCceEEeeccCCceEEEEc-
Confidence 4567899999999 455666889999999999987 4444433 3479999999999999999999999999999999
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTIL 344 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~ 344 (612)
.+++. ..+..|..+|..+.|. ......|+
T Consensus 102 ---~S~Q~-----------------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 102 ---ASGQV-----------------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLV 131 (347)
T ss_pred ---cCCCe-----------------------------------------------eeeeecccceeEEEEecCCCcceeE
Confidence 55533 3344599999999999 43346889
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (612)
+|+.|.+|+.||++...++....
T Consensus 132 TGSWDKTlKfWD~R~~~pv~t~~--------------------------------------------------------- 154 (347)
T KOG0647|consen 132 TGSWDKTLKFWDTRSSNPVATLQ--------------------------------------------------------- 154 (347)
T ss_pred ecccccceeecccCCCCeeeeee---------------------------------------------------------
Confidence 99999999999998655433221
Q ss_pred cEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC
Q 007229 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
.+..+.++.. -...++++..+..|.+|+++++..+.......-+-.+++++..+
T Consensus 155 ------------------------LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~ 208 (347)
T KOG0647|consen 155 ------------------------LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ 208 (347)
T ss_pred ------------------------ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe
Confidence 2223333333 23568888899999999998765432232233345689999999
Q ss_pred CCcEEEEEcCCCeEEEEecCCccee-eecccccc---------cceeEEEecCCCcEEEEeecCcEEEEEEccCCCccee
Q 007229 505 DVSMFASADGNREAIVWDRVSKEVK-LNNMLFHT---------ARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRI 574 (612)
Q Consensus 505 ~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~---------~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 574 (612)
|....|.|+-+|.+.|..+..+... .-.+..|. -.|++++|+|.-..|++++.||++.+||-+. . ..+
T Consensus 209 d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda-r-~kL 286 (347)
T KOG0647|consen 209 DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA-R-TKL 286 (347)
T ss_pred cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh-h-hhh
Confidence 8888899999999999998876321 11233343 3588999999999999999999999999887 4 667
Q ss_pred eeecccccCeeeEEEe-cCceEEE
Q 007229 575 TIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 575 ~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
...+.|..+|++..|. +|.+++-
T Consensus 287 k~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 287 KTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred hccCcCCCccceeEecCCCCEEEE
Confidence 7788899999999999 8887654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=190.05 Aligned_cols=282 Identities=19% Similarity=0.206 Sum_probs=218.7
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
..+.|.++.|+|.++. |+.+++||++++||.....+...+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce
Confidence 3578999999999885 777779999999999988666655 48999999999874 46899999999999999998887
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (612)
..- .|..++.++.+++....+++|+.|++|++||. ........+... ..+.++...++.|++|+.+
T Consensus 89 ~ig----th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~----R~~~~~~~~d~~------kkVy~~~v~g~~LvVg~~~ 154 (323)
T KOG1036|consen 89 QIG----THDEGIRCIEYSYEVGCVISGSWDKTIKFWDP----RNKVVVGTFDQG------KKVYCMDVSGNRLVVGTSD 154 (323)
T ss_pred eec----cCCCceEEEEeeccCCeEEEcccCccEEEEec----cccccccccccC------ceEEEEeccCCEEEEeecC
Confidence 766 89999999999998888999999999999998 544444444333 3778888889999999999
Q ss_pred CEEEEEEcCCCCCCceee-cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEE
Q 007229 306 GIISIFSASNLDKAPLSF-SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIF 384 (612)
Q Consensus 306 ~~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 384 (612)
..+.+||++....+.+.. ..-.-.+.++++.+ ++.-++.++-||.|.+=.++......... .+|.-.
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skk--------yaFkCH--- 222 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKK--------YAFKCH--- 222 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhc--------eeEEee---
Confidence 999999999877665332 23445677888775 46778888899998876655442211110 000000
Q ss_pred EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCe
Q 007229 385 TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSE 464 (612)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 464 (612)
. ........-.+|++++|+|-.+.
T Consensus 223 -----------r---------------------------------------------~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 223 -----------R---------------------------------------------LSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred -----------e---------------------------------------------cccCCceEEEEeceeEeccccce
Confidence 0 00001112347999999999999
Q ss_pred EEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC
Q 007229 465 AIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG 514 (612)
Q Consensus 465 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (612)
||+|+.||.|.+||+.+.+. ...+......|.+++|+.||..||.++.
T Consensus 247 faTgGsDG~V~~Wd~~~rKr--l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKR--LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhh--hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999988776 5667666778999999999999999874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=204.05 Aligned_cols=287 Identities=18% Similarity=0.204 Sum_probs=226.8
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--CCeeeecccccccceEEEEECCCCC-eEEEEEcCCcEEEEecCCCC
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFKLSHREHSNFVNCIRFSPDGS-KLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~ 223 (612)
.+.|+++.|+|..+ ++++++.|+++++|.+. ....++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 46899999999999 79999999999999754 4445556666678999999999999 88999999999999999887
Q ss_pred eeeeeeccCCc-cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE
Q 007229 224 KIGEFSSEDGH-HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV 302 (612)
Q Consensus 224 ~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (612)
....-... ++ ...+.....++++++|+..+..|.|.+... .+++.+.++...
T Consensus 292 ~~k~~~~~-g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha----kT~eli~s~Kie---------------------- 344 (514)
T KOG2055|consen 292 VTKLKPPY-GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA----KTKELITSFKIE---------------------- 344 (514)
T ss_pred cccccCCC-CcccchhheeEecCCCCeEEEcccCceEEeehh----hhhhhhheeeec----------------------
Confidence 65443222 33 346778889999999999999999999998 788887776543
Q ss_pred EcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccE
Q 007229 303 SLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382 (612)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (612)
+.+..+.|+. ++..|++.+.+|.|.+||++...+.....
T Consensus 345 -------------------------G~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~--------------- 383 (514)
T KOG2055|consen 345 -------------------------GVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFV--------------- 383 (514)
T ss_pred -------------------------cEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEe---------------
Confidence 4567777872 27888888889999999998775544322
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
-... -.-++++.|+++
T Consensus 384 --------------D~G~--------------------------------------------------v~gts~~~S~ng 399 (514)
T KOG2055|consen 384 --------------DDGS--------------------------------------------------VHGTSLCISLNG 399 (514)
T ss_pred --------------ecCc--------------------------------------------------cceeeeeecCCC
Confidence 0000 024678899999
Q ss_pred CeEEEEecCCeEEEEEccC----cccccceeeccccCceEEEEEcCCCcEEEEEcC--CCeEEEEecCCcceeeecccc-
Q 007229 463 SEAIVGGQNGKLHIYSISG----NTLTEEMVLEKHRGAITVIQYSPDVSMFASADG--NREAIVWDRVSKEVKLNNMLF- 535 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~- 535 (612)
.|||+|+..|.|.|||.++ ..+.++..+..-...|++|+|+||.+.||.++. +..+|+-.+.+.... ..+..
T Consensus 400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF-sNfP~~ 478 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF-SNFPTS 478 (514)
T ss_pred ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee-ccCCCC
Confidence 9999999999999999653 344456666677788999999999999998875 567898888776653 33322
Q ss_pred --cccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 536 --HTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 536 --~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
.-+.|+|++|||.+.+||.|..+|.+.+|.+.
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 34569999999999999999999999999874
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=220.81 Aligned_cols=287 Identities=18% Similarity=0.308 Sum_probs=223.2
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc---CCEEEEEEcCCEEEEE
Q 007229 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ---NDHLITVSLGGIISIF 311 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~ 311 (612)
.....+|...++-..++.++.. .+++|.+........+...+... +.....+..+.|. .+.+++++.+|.|.+|
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~k--qn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTK--QNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccc--cceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 3445677777887778877654 78888885443444443333211 1112222223333 7889999999999999
Q ss_pred EcCC--CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCC
Q 007229 312 SASN--LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFD 389 (612)
Q Consensus 312 ~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~ 389 (612)
|+.. ..+.+..+..|...+..+.|+.....+|++|++||.|++||++..+.......
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~--------------------- 174 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS--------------------- 174 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---------------------
Confidence 9988 45566688999999999999976699999999999999999987665443321
Q ss_pred CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEE
Q 007229 390 NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVG 468 (612)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~ 468 (612)
....|..+.|+| .+.+++++
T Consensus 175 -----------------------------------------------------------nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 175 -----------------------------------------------------------NSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred -----------------------------------------------------------cchhhhceeeccCCCceEEEe
Confidence 123578889998 57789999
Q ss_pred ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCC
Q 007229 469 GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548 (612)
Q Consensus 469 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 548 (612)
.+.|.+++||++.... ....+.+|.++|.++.|+|++.+||+|+.|++|+|||..+.+...........++.++.|-|+
T Consensus 196 ~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred cCCceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 9999999999987653 467789999999999999999999999999999999998766543323335678999999998
Q ss_pred CcE-EEEee--cCcEEEEEEccCCCcceeeeecccccCeeeEEEe--cCceEEEccCCCeEEE
Q 007229 549 STM-VATGS--IDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM--DDFNVVSSGEDACIRV 606 (612)
Q Consensus 549 ~~~-l~s~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~ 606 (612)
..+ ||+++ .|..|+|||+..+. -+..++..|...++.++|- |...|.+++.||+|..
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccchhhhhhccccceEEEEeecccc-ccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 764 67665 58899999999977 8889999999999999998 6677999999998754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=208.05 Aligned_cols=240 Identities=15% Similarity=0.185 Sum_probs=205.6
Q ss_pred CCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCc---eeeEe--ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC
Q 007229 16 TERGRGILISGNPKTDTILYCNGRSVLIRYLDKPL---HVEFY--GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~---~~~~~--~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~ 90 (612)
.|-+-|+++++|...+++.+|+.|.|.|||+.... .+..| ....+-|.++.++|||+.|++|+.-.++.|||+..
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 46678999999999999999999999999997542 12222 23466799999999999999999999999999987
Q ss_pred Cce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 91 GFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 91 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
... ++.++....-..++++.+||.+...++..++ .|.||++.....++.|++|++.+.||.+++||. .|-||+-|
T Consensus 497 pTprikaeltssapaCyALa~spDakvcFsccsdG---nI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-klWTGGlD 572 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDG---NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-KLWTGGLD 572 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCccceeeeeccCC---cEEEEEcccceeeecccCCCCCceeEEecCCCc-eeecCCCc
Confidence 654 4444554455678899999999999988888 478898889999999999999999999999998 59999999
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
.+||.||+++++.+... .....|.++.++|++.+|+.|-+++.+.|......+..+.. .|...|.++.|.+.|++
T Consensus 573 ntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh----lheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH----LHESCVLSLKFAYCGKW 647 (705)
T ss_pred cceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceeec----ccccEEEEEEecccCce
Confidence 99999999998876553 34577999999999999999999999999987655554444 79999999999999999
Q ss_pred EEEEeCCCcEEEEEe
Q 007229 250 VLTVSADKSAKVWEI 264 (612)
Q Consensus 250 l~~~~~dg~i~iw~~ 264 (612)
+++.+.|.-+..|..
T Consensus 648 fvStGkDnlLnawrt 662 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRT 662 (705)
T ss_pred eeecCchhhhhhccC
Confidence 999999999999998
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=205.00 Aligned_cols=264 Identities=19% Similarity=0.302 Sum_probs=203.8
Q ss_pred CccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 233 GHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
.|.+.|..+.+.|... .+++.+..+.+.|||.. ...-.....
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~t----k~~s~~~~~--------------------------------- 164 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYT----KHPSKPKAS--------------------------------- 164 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEec----cCCCccccc---------------------------------
Confidence 7899999999999654 55666778899999982 221111100
Q ss_pred EcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
....+...+.+|...-.+++|+......+++++.|+.|++||+..........
T Consensus 165 ---~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~------------------------ 217 (422)
T KOG0264|consen 165 ---GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV------------------------ 217 (422)
T ss_pred ---ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc------------------------
Confidence 01233456778888778888885558899999999999999987543310000
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee-cccceEEEEEEcc-CCCeEEEEe
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI-DLGFTVTACAIAP-DGSEAIVGG 469 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~ 469 (612)
.....+ .|...|..++|++ +..++++.+
T Consensus 218 --------------------------------------------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 218 --------------------------------------------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred --------------------------------------------------cceEEeecCCcceehhhccccchhhheeec
Confidence 000111 1455688899998 556788899
Q ss_pred cCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCC
Q 007229 470 QNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548 (612)
Q Consensus 470 ~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 548 (612)
.|+.+.|||++++.........+|.++|.|++|+| ++..||+|+.|++|++||+++.......+.+|...|.++.|||+
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 99999999999644444778889999999999999 77889999999999999999988877889999999999999996
Q ss_pred C-cEEEEeecCcEEEEEEccCCC------------cceeeeecccccCeeeEEEe-cCc-eEEEccCCCeEEEEEec
Q 007229 549 S-TMVATGSIDTCVIIYEIGKPA------------SSRITIKNAHLGGVYGVAFM-DDF-NVVSSGEDACIRVWRLA 610 (612)
Q Consensus 549 ~-~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~~~d~~i~~w~~~ 610 (612)
. ..||+++.|+.+.|||+..-+ .+++....||...|..+.|. ... .++|+++|+.+.||++.
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 5 578999999999999997622 13456778999999999999 444 48899999999999986
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=188.20 Aligned_cols=246 Identities=20% Similarity=0.269 Sum_probs=200.4
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC---ceeeEeccCCCceEEEEECC--CCCEEEEeeCcCeEEEeecC
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP---LHVEFYGEHGYPVTVARYSP--NGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~s~--d~~~las~~~d~~i~iwd~~ 89 (612)
.|+..|..+...-.|+.||+++ |+.|+|+...+. +++..|.||+++|..++|.. -|.+||+++.||.|.||.-+
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 4666777788888999999998 899999998754 45777999999999999987 89999999999999999999
Q ss_pred CCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCC---ceeeeeccCCceEEEEEEcCC---C-
Q 007229 90 NGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSG---TTVGDFDGHSRRVLSCEFKPT---R- 159 (612)
Q Consensus 90 ~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~---~- 159 (612)
+++- .......|...|++++|.|. |-.|+.++.|+ .|.|..++.. ........|.-.|++++|.|. |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG---~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG---KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCC---cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 8853 33466789999999999996 45777888888 4677777643 233446789999999999986 3
Q ss_pred ---------CEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCC----CeEEEEEcCCcEEEEecCCCCe
Q 007229 160 ---------PFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDG----SKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 160 ---------~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
.+.|++|+.|..|++|+..+++ ...++.+|.+.|+.++|.|.- .++++++.||++.||.......
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 1369999999999999988754 334589999999999999964 4899999999999998663222
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
..+....+.....+..+.|+..|+.|++++.|+.+.+|.-
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 2222223456788999999999999999999999999986
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=201.77 Aligned_cols=261 Identities=21% Similarity=0.304 Sum_probs=205.8
Q ss_pred cCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCceee---------eeeeecCCCeEEEEECCCCC-EEEEEeCCCC
Q 007229 57 EHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFVLK---------NEFKVLSGRIDDLQWSPDGL-RIVACGDGKG 125 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~ 125 (612)
.|.+.|+.+.+-|+. ..+|+.+..+.|.|||........ ..+.+|...=+.++|++... +|++++.+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~- 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH- 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC-
Confidence 589999999999965 567778899999999987543321 27889999888899999654 677777776
Q ss_pred eeeEEEEEecC-------CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--CCeeeecccccccceEEE
Q 007229 126 KSFVRAFMWDS-------GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFKLSHREHSNFVNCI 196 (612)
Q Consensus 126 ~~~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~ 196 (612)
.+.+|+.+. -.+...+.+|...|..++|+|....++++++.|+.+.|||.+ +.+......+|.++|.|+
T Consensus 201 --~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 201 --TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred --cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 456666662 224567899999999999999988899999999999999999 566666788999999999
Q ss_pred EECC-CCCeEEEEEcCCcEEEEecCCCCe-eeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 197 RFSP-DGSKLISVSSDRKGLIYDGKSGEK-IGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 197 ~~s~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+|+| ++..||+|+.|++|++||+++-.. +..+ .+|...|..+.|+|. ...|++++.|+.+.+||+..- ..
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~---e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i----g~ 351 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTF---EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI----GE 351 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceec---cCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc----cc
Confidence 9999 556788999999999999987554 4444 599999999999995 567888999999999999321 11
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEE
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAII 353 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 353 (612)
.+...... ..+...+..-.||...|..+.|.+...-.+++.+.|+.+.
T Consensus 352 eq~~eda~--------------------------------dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 352 EQSPEDAE--------------------------------DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred ccChhhhc--------------------------------cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 11100000 2223344566789999999999977788999999999999
Q ss_pred EEEcCC
Q 007229 354 KWIRGV 359 (612)
Q Consensus 354 ~wd~~~ 359 (612)
||.+..
T Consensus 400 IW~~s~ 405 (422)
T KOG0264|consen 400 IWQMAE 405 (422)
T ss_pred Eeeccc
Confidence 998763
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=185.70 Aligned_cols=257 Identities=20% Similarity=0.329 Sum_probs=200.1
Q ss_pred ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCcEEEEE
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~iw~ 263 (612)
...|.+.|..+...--|+.|++++.|++|+|+..+.......+....+|.+||..++|.. .|..|++++.||.|.+|.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 346888888888888899999999999999999988765444444579999999999976 799999999999999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQT 342 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 342 (612)
- ++++-.+ ......|...|++++|. ..-+-.
T Consensus 87 e----~~g~w~k--------------------------------------------~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 87 E----ENGRWTK--------------------------------------------AYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred c----CCCchhh--------------------------------------------hhhhhhhcccceeecccccccceE
Confidence 7 4442221 23455699999999999 444678
Q ss_pred EEEEecCCcEEEEEcCCce---eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeee
Q 007229 343 ILSSSYDGAIIKWIRGVGY---SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419 (612)
Q Consensus 343 l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (612)
|++++.||.|.+.+.+... ...+...|.-
T Consensus 119 LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~------------------------------------------------ 150 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGGWTTSKIVFAHEI------------------------------------------------ 150 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCCccchhhhhcccc------------------------------------------------
Confidence 8899999999998776541 1111111222
Q ss_pred cCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC---C-----------CeEEEEecCCeEEEEEccCcccc
Q 007229 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD---G-----------SEAIVGGQNGKLHIYSISGNTLT 485 (612)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~~dg~v~i~d~~~~~~~ 485 (612)
.++++++.|. | +.|++|+.|..|+||+.+++...
T Consensus 151 --------------------------------GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 151 --------------------------------GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK 198 (299)
T ss_pred --------------------------------ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence 3444444442 2 57999999999999999998877
Q ss_pred cceeeccccCceEEEEEcCCC----cEEEEEcCCCeEEEEecCCc--ceeeecccccccceeEEEecCCCcEEEEeecCc
Q 007229 486 EEMVLEKHRGAITVIQYSPDV----SMFASADGNREAIVWDRVSK--EVKLNNMLFHTARINCLAWSPSSTMVATGSIDT 559 (612)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~ 559 (612)
....+.+|.+.|+.++|.|.- .+||+++.||++.||..... +-..+.+......+..+.||+.|+.|++++.|+
T Consensus 199 ~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 199 LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence 778899999999999999954 58999999999999976532 112233444567899999999999999999999
Q ss_pred EEEEEEccCCC
Q 007229 560 CVIIYEIGKPA 570 (612)
Q Consensus 560 ~i~iwd~~~~~ 570 (612)
.|.+|.-...+
T Consensus 279 kvtlwke~~~G 289 (299)
T KOG1332|consen 279 KVTLWKENVDG 289 (299)
T ss_pred EEEEEEeCCCC
Confidence 99999876544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=205.13 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=230.8
Q ss_pred ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC---eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 188 EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE---KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 188 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.|..-|.++.+|...+++++|+. |.|+|||+.... .+..+... .....|.++.+.|||+.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEeccccceeeeeec
Confidence 57788899999999999999885 889999987543 23333222 35678999999999999999999999999999
Q ss_pred ecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 265 LEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
......-. ..+........+++.+ ++.+..+
T Consensus 495 ----AapTprik--------------------------------------------aeltssapaCyALa~s-pDakvcF 525 (705)
T KOG0639|consen 495 ----AAPTPRIK--------------------------------------------AELTSSAPACYALAIS-PDAKVCF 525 (705)
T ss_pred ----cCCCcchh--------------------------------------------hhcCCcchhhhhhhcC-Cccceee
Confidence 33222111 1111122234445555 2378889
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALS 422 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (612)
++..||.|.|||+.+...++.+..|...+.||.. ++..|.+|+.|+++|.||++++...
T Consensus 526 sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql------------------- 586 (705)
T KOG0639|consen 526 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL------------------- 586 (705)
T ss_pred eeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-------------------
Confidence 9999999999999999999999999999999999 6899999999999999999877643
Q ss_pred CCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEE
Q 007229 423 SPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQY 502 (612)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 502 (612)
.+.+....|.++..+|.+.+|++|.+++.+.|......+ ...+.-|..-|.++.|
T Consensus 587 ----------------------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 587 ----------------------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKF 641 (705)
T ss_pred ----------------------hhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEe
Confidence 344456679999999999999999999999999887655 3667889999999999
Q ss_pred cCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 503 SPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 503 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
++-|+++++.+.|+.+-.|...-+..+++.. ..+.|.++..|.|.++++||+.|+...||.+
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999999999998875443 4788999999999999999999998888876
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=184.61 Aligned_cols=320 Identities=19% Similarity=0.266 Sum_probs=230.7
Q ss_pred eccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 55 YGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
...|.+.|+++.+.+ .|+|+++|+.||.|.|||+++...... .+-|. + .+...+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-----s~li~------k--~~c~v~------------ 93 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-----SGLIA------K--HKCIVA------------ 93 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-----cccee------h--eeeecc------------
Confidence 457899999999998 789999999999999999987642110 00000 0 000000
Q ss_pred ecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCC---CCeEEEEEc
Q 007229 134 WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPD---GSKLISVSS 210 (612)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~ 210 (612)
...-.+|.-.|..+.|-|-+.-++.+++-|.++++||..+.+....++ .++.|.+-++||- -.++|+|..
T Consensus 94 ------~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr 166 (397)
T KOG4283|consen 94 ------KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTR 166 (397)
T ss_pred ------ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecC
Confidence 111246888999999999777689999999999999999998887775 4567888889884 347888888
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE-EEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK-VLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
+-.|++-|+.+|.....+ .+|.+.|.++.|+|...+ |++|+.||.+++||++.. ..+...+..++.
T Consensus 167 ~~~VrLCDi~SGs~sH~L---sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra---sgcf~~lD~hn~------- 233 (397)
T KOG4283|consen 167 DVQVRLCDIASGSFSHTL---SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA---SGCFRVLDQHNT------- 233 (397)
T ss_pred CCcEEEEeccCCcceeee---ccccCceEEEEeccCceeEEEecCCCceEEEEEeecc---cceeEEeecccC-------
Confidence 999999999999999999 499999999999997765 678899999999999321 123333332210
Q ss_pred eeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 290 VGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
......+.-..|.+.+..++|. + +.++++.+.|..+++|+...+........
T Consensus 234 -------------------------k~~p~~~~n~ah~gkvngla~tSd--~~~l~~~gtd~r~r~wn~~~G~ntl~~~g 286 (397)
T KOG4283|consen 234 -------------------------KRPPILKTNTAHYGKVNGLAWTSD--ARYLASCGTDDRIRVWNMESGRNTLREFG 286 (397)
T ss_pred -------------------------ccCccccccccccceeeeeeeccc--chhhhhccCccceEEeecccCcccccccc
Confidence 0111223356799999999999 6 88999999999999999887754332110
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
++ .....
T Consensus 287 ---~~----------------------------------------------------------------------~~n~~ 293 (397)
T KOG4283|consen 287 ---PI----------------------------------------------------------------------IHNQT 293 (397)
T ss_pred ---cc----------------------------------------------------------------------ccccc
Confidence 00 00000
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
....+. +. +.+...++.--.++.+.++++-.+.. +..+..|-..|.+.++-|+-+.+.+++.|+.|..|-.
T Consensus 294 ~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~--ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 294 TSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSF--VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceEE-Ee-ecccceEEEEecCCeEEEEEccCceE--EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 000011 11 22333344334557899999888877 6788889889999999999999999999999999976
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=208.12 Aligned_cols=342 Identities=19% Similarity=0.237 Sum_probs=230.9
Q ss_pred EEEcC--CCCEEEEEeecCCeEEEEeCCCCeee------ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe
Q 007229 153 CEFKP--TRPFRIATCGEDFLVNFYEGPPFKFK------LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 153 ~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
..|++ ....+|+.+.+||.|.++|.+..... .....|.+.|..+.|.|....|++++.|.++++||+++.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55544 44458999999999999997765443 44567999999999999777899999999999999999988
Q ss_pred eeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE
Q 007229 225 IGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS 303 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
...-. ..+|.+.+.+++|.| |...|++|+.||.+.|||+........ ..+... +.+.
T Consensus 135 ~G~~~-~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~--e~~~~~-------------------~~~~ 192 (720)
T KOG0321|consen 135 VGGRL-NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL--EEFDNR-------------------IYGR 192 (720)
T ss_pred eccee-ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH--HHHhhh-------------------hhcc
Confidence 87621 239999999999999 456789999999999999943221110 000000 0000
Q ss_pred cCCEEEEEEcCCCCCCceeecCcccce----eEEEEEecCCcEEEEEec-CCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 304 LGGIISIFSASNLDKAPLSFSGHVKNV----STLTALKISQQTILSSSY-DGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
..+. . -......+.......+...+ +.+.|-+ +..|++++. |+.|++||++........... ++
T Consensus 193 ~n~~-p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~--~~----- 261 (720)
T KOG0321|consen 193 HNTA-P-TPSKPLKKRIRKWKAASNTIFSSVTVVLFKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPR--GS----- 261 (720)
T ss_pred ccCC-C-CCCchhhccccccccccCceeeeeEEEEEec--cceeeeccCCCcceEEEeecccccccccCCC--cc-----
Confidence 0000 0 00000111122223344333 3344445 677777666 788888887765443221100 00
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEE
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAI 458 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 458 (612)
. .....-.....++++..
T Consensus 262 --------------------------------~------------------------------~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 262 --------------------------------D------------------------------KYPTHSKRSVGQVNLIL 279 (720)
T ss_pred --------------------------------c------------------------------CccCcccceeeeEEEEe
Confidence 0 00000001235788888
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCc--eEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccc
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA--ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFH 536 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 536 (612)
...|.+|++.+.|+.|+.|++.+....+...+.++... -..-..+||+.+|++|+.|...++|.+.+.+.....+.+|
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh 359 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH 359 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc
Confidence 88899999999999999999988776555555544322 2223578999999999999999999999998877889999
Q ss_pred ccceeEEEecCCC-cEEEEeecCcEEEEEEccCCCcce-------------eeeecccccCeeeEEEe
Q 007229 537 TARINCLAWSPSS-TMVATGSIDTCVIIYEIGKPASSR-------------ITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 537 ~~~i~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~-------------~~~~~~h~~~v~~~~~~ 590 (612)
.-.|++++|.|.. .-+|++++|.++++|++..+. +. ...+++|...+..+.++
T Consensus 360 t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l-~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss 426 (720)
T KOG0321|consen 360 TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL-EEIYAADKDSIVYEYSRRFKGHLPQVLNVNSS 426 (720)
T ss_pred ceEEEEEeeccccCCCceeeccCcceEEEeccCch-hhccccccchhhhhhhhhhhcccccccccccc
Confidence 9999999999843 347788999999999997633 22 23456777677666665
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=197.95 Aligned_cols=294 Identities=16% Similarity=0.138 Sum_probs=230.8
Q ss_pred CEEEEEeCCCCceeeEeccCC-CceEEEEECCCCCEEEEee-CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 39 RSVLIRYLDKPLHVEFYGEHG-YPVTVARYSPNGEWIASAD-VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
..+.+||+.+|...-.+++-. ..-.++..- .+.+++++. ....|.+|.+....... ....-++.+.+++-+|+|.+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCceE
Confidence 579999999998888777652 111111111 235677664 34579999998776433 44456788999999999999
Q ss_pred EEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC---------CCeeeeccc
Q 007229 117 IVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP---------PFKFKLSHR 187 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~---------~~~~~~~~~ 187 (612)
|+.++..+ .+.+|...+|+.+..+.+|-..|+++.|+.||. .+++|+.||.|.+|.+. +-++...+.
T Consensus 96 l~ag~i~g---~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 96 LLAGTISG---NLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS 171 (476)
T ss_pred EEeecccC---cEEEEEeccccHHHHHHhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence 99987766 367777779999999999999999999999999 59999999999999742 345667788
Q ss_pred ccccceEEEEECCCC--CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 188 EHSNFVNCIRFSPDG--SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 188 ~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
+|.-+|+.+...+.| .+|++++.|.++++||+..|..+..+ .....+.+++.+|.++.+++|+.+|.|.+.++.
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE----ecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 999999999988753 58999999999999999999999998 678899999999999999999999999988873
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc--ceeEEEEE-ecCCcE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--NVSTLTAL-KISQQT 342 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~ 342 (612)
......+-+.. + .+ .........+.+|.+ .|++++++ + +.+
T Consensus 248 ~~~~~~~~v~~-k-------------------------------~~--~~~~t~~~~~~Gh~~~~~ITcLais~D--gtl 291 (476)
T KOG0646|consen 248 KLSGQSAGVNQ-K-------------------------------GR--HEENTQINVLVGHENESAITCLAISTD--GTL 291 (476)
T ss_pred cCCcccccccc-c-------------------------------cc--ccccceeeeeccccCCcceeEEEEecC--ccE
Confidence 21110000000 0 00 111233456778888 99999999 7 999
Q ss_pred EEEEecCCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 343 ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 343 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
|++|+.||.+++||+.+.++++......++|+.+.+
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 999999999999999999998887767788887777
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=195.40 Aligned_cols=287 Identities=16% Similarity=0.241 Sum_probs=227.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
.+.|+++.|+|....|+++|.++ .++++..+ ....++.+.-...+|.+++|.|+|...+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~---~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDG---TLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCC---cEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 46899999999999999999999 57888888 56677888778899999999999997799999999999999998
Q ss_pred Ceeeec--ccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC
Q 007229 180 FKFKLS--HREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 180 ~~~~~~--~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 256 (612)
.+..+. +.++. ..+.....+|++++|+..+..|.|.+....+++.+..+ .-.+.|..++|+.|++.|++++.+
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~----KieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF----KIEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee----eeccEEeeEEEecCCcEEEEEcCC
Confidence 876543 33443 45778889999999999999999999999999999999 678899999999999999999999
Q ss_pred CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce--eEEE
Q 007229 257 KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV--STLT 334 (612)
Q Consensus 257 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v--~~~~ 334 (612)
|.|.+||+ ....++..+.... .| +.++
T Consensus 366 GeV~v~nl----~~~~~~~rf~D~G-----------------------------------------------~v~gts~~ 394 (514)
T KOG2055|consen 366 GEVYVWNL----RQNSCLHRFVDDG-----------------------------------------------SVHGTSLC 394 (514)
T ss_pred ceEEEEec----CCcceEEEEeecC-----------------------------------------------ccceeeee
Confidence 99999999 7777776665432 12 2233
Q ss_pred EEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCc
Q 007229 335 ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQP 414 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 414 (612)
.+ .++.++++|+..|.|.|||.++.......
T Consensus 395 ~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~P------------------------------------------------ 425 (514)
T KOG2055|consen 395 IS-LNGSYLATGSDSGIVNIYDGNSCFASTNP------------------------------------------------ 425 (514)
T ss_pred ec-CCCceEEeccCcceEEEeccchhhccCCC------------------------------------------------
Confidence 33 22789999999999999986543211110
Q ss_pred ceeeecCCCCcEEEEEeeccEEEeecccceeeec-ccceEEEEEEccCCCeEEEEec--CCeEEEEEccCcccccceeec
Q 007229 415 LDLSLALSSPELALVSTESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIVGGQ--NGKLHIYSISGNTLTEEMVLE 491 (612)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~ 491 (612)
+++..+. ....|+++.|+||.++||.++. ...+++-.+.+... ...++
T Consensus 426 ---------------------------kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV--FsNfP 476 (514)
T KOG2055|consen 426 ---------------------------KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV--FSNFP 476 (514)
T ss_pred ---------------------------CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee--eccCC
Confidence 1111111 3346999999999999998875 46788888876554 22222
Q ss_pred c---ccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 492 K---HRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 492 ~---~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
. .-+.++|++|||.+.+||.|.++|.+.+|.+.
T Consensus 477 ~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 2 23569999999999999999999999999874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=185.30 Aligned_cols=242 Identities=21% Similarity=0.230 Sum_probs=197.4
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC--eEEEEEcCCcEEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS--KLISVSSDRKGLI 216 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v 216 (612)
++..+..|..++++++.+ ++ .+|+|+.|-+|++||++....+..+..|.+.|+++.|.++-. .|++|+.||.|.+
T Consensus 35 ~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 456778999999999986 45 499999999999999999999999999999999999999775 8999999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ- 295 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (612)
|+....+.+..+ ++|.+.|+.++.+|.+++-++.+.|+.+++||+ -.++.-...+...... .+.|.
T Consensus 112 w~~~~W~~~~sl---K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL----V~Gr~a~v~~L~~~at------~v~w~~ 178 (362)
T KOG0294|consen 112 WRVGSWELLKSL---KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL----VRGRVAFVLNLKNKAT------LVSWSP 178 (362)
T ss_pred EEcCCeEEeeee---cccccccceeEecCCCceEEEEcCCceeeeehh----hcCccceeeccCCcce------eeEEcC
Confidence 999999888888 589999999999999999999999999999999 7777666555544221 14444
Q ss_pred -CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 296 -NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 296 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
+++++. ...+.|-+|.+........ + .....+.++.|.+ +..+++|..|+.|.+||.+...+...+..|..+|.
T Consensus 179 ~Gd~F~v-~~~~~i~i~q~d~A~v~~~-i-~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 179 QGDHFVV-SGRNKIDIYQLDNASVFRE-I-ENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK 253 (362)
T ss_pred CCCEEEE-EeccEEEEEecccHhHhhh-h-hccccceeeeecC--CceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence 444444 4456678887654322111 1 1224466666666 89999999999999999999888888888999999
Q ss_pred EEEe----eccEEEEecCCCeEEEEecCCCC
Q 007229 375 CLAA----VEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 375 ~~~~----~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
.+.+ ...+|++++.||.|++||+....
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 9997 34699999999999999998764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=198.72 Aligned_cols=295 Identities=15% Similarity=0.124 Sum_probs=204.2
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEe-CCCCeeeEEEEEecCCceeeeeccCCce
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACG-DGKGKSFVRAFMWDSGTTVGDFDGHSRR 149 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 149 (612)
++++++++.|+.|++||+.+++. ...+..+ ..+..++|+|+++.+++++ .++ .+.+|+.++++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~---~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-TRTFPVG-QRPRGITLSKDGKLLYVCASDSD---TIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-EEEEECC-CCCCceEECCCCCEEEEEECCCC---eEEEEECCCCcEEEeccCCCC-
Confidence 35788999999999999998874 4455544 3467899999999875544 444 466666667877777766544
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC-cEEEEecCCCCeeeee
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR-KGLIYDGKSGEKIGEF 228 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~ 228 (612)
+..++|+|+++.++++++.++.+++||+.+.+.+..+.. ...+.+++|+|++++++++..++ .+.+||..+++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 467899999997666777889999999999887766653 23468899999999999888765 4677899888776655
Q ss_pred eccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCE
Q 007229 229 SSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307 (612)
Q Consensus 229 ~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (612)
.....+..++|+|+++++++++ .++.+++||+ .+++.+..+.....
T Consensus 154 ----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~----~~~~~~~~~~~~~~------------------------- 200 (300)
T TIGR03866 154 ----LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDV----ATRKVIKKITFEIP------------------------- 200 (300)
T ss_pred ----EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEc----Ccceeeeeeeeccc-------------------------
Confidence 2233457899999999886554 5899999999 77666554432110
Q ss_pred EEEEEcCCCCCCceeecCcccceeEEEEEecCCcE-EEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEe
Q 007229 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT-ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386 (612)
Q Consensus 308 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 386 (612)
. ..........+.+++. ++. +++...++.+.+||.++.+.....
T Consensus 201 ---------~-----~~~~~~~~~~i~~s~d-g~~~~~~~~~~~~i~v~d~~~~~~~~~~-------------------- 245 (300)
T TIGR03866 201 ---------G-----VHPEAVQPVGIKLTKD-GKTAFVALGPANRVAVVDAKTYEVLDYL-------------------- 245 (300)
T ss_pred ---------c-----cccccCCccceEECCC-CCEEEEEcCCCCeEEEEECCCCcEEEEE--------------------
Confidence 0 0000011224555532 444 344455667888887654432111
Q ss_pred cCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEE
Q 007229 387 GFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAI 466 (612)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 466 (612)
.....+.+++|+|++++|+
T Consensus 246 -------------------------------------------------------------~~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 246 -------------------------------------------------------------LVGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred -------------------------------------------------------------EeCCCcceEEECCCCCEEE
Confidence 0112467899999999998
Q ss_pred EE-ecCCeEEEEEccCcccccceeeccccCceEEEEEcC
Q 007229 467 VG-GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 467 ~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
++ ..+|.|.+||+.+++. ...++.. .....++++|
T Consensus 265 ~~~~~~~~i~v~d~~~~~~--~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 265 TTNGVSNDVSVIDVAALKV--IKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEcCCCCeEEEEECCCCcE--EEEEEcc-cccceeEeCC
Confidence 86 4689999999999886 4444433 4458888775
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-23 Score=192.78 Aligned_cols=470 Identities=16% Similarity=0.185 Sum_probs=317.0
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC---EEEEEeCCCCeeeEEE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL---RIVACGDGKGKSFVRA 131 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~~~~~~~i~i 131 (612)
+.|-...-..-.||+|+++++.... ..|.||...+++++. .+..|..++..+.+.|... ++.+++.++ .|++
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~-~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G---~I~v 86 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT-SLEDHTAPLTSVIVLPSSENANYLIVCSLDG---TIRV 86 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhh-hcccccCccceeeecCCCccceEEEEEecCc---cEEE
Confidence 5555555556789999999988854 589999999999554 8999999999999988654 677888888 6899
Q ss_pred EEecCCceeeeeccCCceEEEEEEcC----CCCEEEEEeecC------------CeEEEEeCCCCe--eeecccccccce
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKP----TRPFRIATCGED------------FLVNFYEGPPFK--FKLSHREHSNFV 193 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~d------------~~i~~wd~~~~~--~~~~~~~~~~~v 193 (612)
|+|..+..+..+..+.. +..+.+.| ... .+..+..| +.++-+.+.+.. ....+.+|.. -
T Consensus 87 wd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~-~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~ 163 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLP-VHALVYKPAQADISA-NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-P 163 (792)
T ss_pred ecCCCcEEEEEEecCCc-eeEEEechhHhCccc-eeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-C
Confidence 99999999988875443 22222211 111 11122222 111111111111 1111223333 5
Q ss_pred EEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee-eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCe
Q 007229 194 NCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE-FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 272 (612)
.++.+++.|++.+..- +..+.+|+..++..... ......|...+++.+++|++++++++..||.|.+|.- -+.
T Consensus 164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d-----~~~ 237 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD-----FGS 237 (792)
T ss_pred ccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec-----ccc
Confidence 6788888887666554 56688998877552111 1112357777899999999999999999999999985 110
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCc
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGA 351 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~ 351 (612)
.........+.-|...|.+++|+ + +.+|++|+.+|.
T Consensus 238 -----------------------------------------~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~V 274 (792)
T KOG1963|consen 238 -----------------------------------------SDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGV 274 (792)
T ss_pred -----------------------------------------ccccccceEEEecccccceeEEecC--CceEeecccceE
Confidence 01112235567799999999999 6 999999999999
Q ss_pred EEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
+.+|.+.+++ .+.++.-.++|..+.+ +++.......|+.|.+....+........ .+......
T Consensus 275 Lv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs-gi~~~~~~------------- 339 (792)
T KOG1963|consen 275 LVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS-GIKPPTPS------------- 339 (792)
T ss_pred EEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc-CccCCCcc-------------
Confidence 9999999999 4455558899998888 78888888999999988775544320000 00000000
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec---------cccCceEEE
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE---------KHRGAITVI 500 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---------~~~~~i~~~ 500 (612)
..-....-.+.++++|.-+.++..+..|.|.+||+.+.+........ .+.-.++++
T Consensus 340 ---------------~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav 404 (792)
T KOG1963|consen 340 ---------------TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAV 404 (792)
T ss_pred ---------------ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeee
Confidence 00011223567888997778888899999999999776542111111 123457888
Q ss_pred EEcCCCcEEEEEcC--------C--CeEEEEecCCcc----eeeecccccccceeEEEecCC-C-cEEEEeecCcEEEEE
Q 007229 501 QYSPDVSMFASADG--------N--REAIVWDRVSKE----VKLNNMLFHTARINCLAWSPS-S-TMVATGSIDTCVIIY 564 (612)
Q Consensus 501 ~~s~~~~~l~~~~~--------d--~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~s~~-~-~~l~s~~~d~~i~iw 564 (612)
+.+-.|.+++|... | -.+++|-..... +..+...+|...+.+.++.+. . ...++++.||.++||
T Consensus 405 ~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 405 ARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence 88889999998742 2 357889654433 333445678877777766642 2 278999999999999
Q ss_pred EccCC--------CcceeeeecccccCeeeEEEecCceEEEccCCCeEEEEEecc
Q 007229 565 EIGKP--------ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 565 d~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~~ 611 (612)
-+... .+.|...-..|..++++++|+.++.+++++.|+.|.+||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 98331 223444444589999999999444777888899999999865
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=180.58 Aligned_cols=301 Identities=18% Similarity=0.198 Sum_probs=228.0
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee---------------eecccccccceEEEEECC-CCCeEEE
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF---------------KLSHREHSNFVNCIRFSP-DGSKLIS 207 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---------------~~~~~~~~~~v~~~~~s~-~~~~l~~ 207 (612)
..|.+.|.++...+....++++|+.||.|.+||+++... ...-.+|.-.|.++.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 458899999999986555699999999999999876431 011236778899999999 5567888
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC---CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD---GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
++.|.+++|||..+-+....| ..++.|++-+++|- -.++++|..+-.|++-|+ .++..-
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi----~SGs~s---------- 181 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI----ASGSFS---------- 181 (397)
T ss_pred ccccceEEEeecccceeeEEe----ecCceeehhhcChhhhcceEEEEecCCCcEEEEec----cCCcce----------
Confidence 999999999999999999998 67888999999983 346777888889999999 555443
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
..+.+|...|.++.|++..+-.|++|+.||.|++||++...
T Consensus 182 ------------------------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras--- 222 (397)
T KOG4283|consen 182 ------------------------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS--- 222 (397)
T ss_pred ------------------------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc---
Confidence 56778999999999997667889999999999999987541
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
|.+++.|..+.... ..+
T Consensus 223 -------------------------gcf~~lD~hn~k~~--------------------------------------p~~ 239 (397)
T KOG4283|consen 223 -------------------------GCFRVLDQHNTKRP--------------------------------------PIL 239 (397)
T ss_pred -------------------------ceeEEeecccCccC--------------------------------------ccc
Confidence 23333343332111 011
Q ss_pred e-eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec-cccCce---EEEEEcCCCcEEEEEcCCCeEE
Q 007229 445 S-KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAI---TVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 445 ~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i---~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
+ ...|.+.+..++|+.|+.++++.+.|..+++|+..+|+-.....-+ .|+..+ ..+. +-+...++---.++.+.
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~la 318 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLA 318 (397)
T ss_pred cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEE
Confidence 1 2336778999999999999999999999999999887642111111 121110 1122 23344444445568999
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
++++-.+..+ ..+..|-..|.+.++-|+-+.+.++..|+.|..|-.
T Consensus 319 ll~~~sgs~i-r~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 319 LLNLLEGSFV-RRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEccCceEE-EeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999999887 668889999999999999999999999999999987
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-24 Score=197.80 Aligned_cols=286 Identities=15% Similarity=0.141 Sum_probs=200.9
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE-EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL-ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
++++++.|+.+++||+.+++....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+. . ...+..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~-~~~~~~ 77 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---S-GPDPEL 77 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---C-CCCccE
Confidence 68999999999999999998888877654 46789999999977 456678999999999988877662 2 233567
Q ss_pred EEEecCCCEEEEE-eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 241 VSWSPDGKKVLTV-SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 241 i~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
++|+|+++.++++ +.++.+++||+ .+.+.+..+...
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~----~~~~~~~~~~~~--------------------------------------- 114 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDI----ETRKVLAEIPVG--------------------------------------- 114 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEEC----CCCeEEeEeeCC---------------------------------------
Confidence 8999999977655 45899999999 655554433211
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCC-cEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecC
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDG-AIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~ 398 (612)
..+..+++++ ++..++++..++ .+..||..+.+.....
T Consensus 115 --------~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-------------------------------- 153 (300)
T TIGR03866 115 --------VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV-------------------------------- 153 (300)
T ss_pred --------CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE--------------------------------
Confidence 1234466653 267777776654 4556666543321110
Q ss_pred CCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEe-cCCeEEEE
Q 007229 399 EGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG-QNGKLHIY 477 (612)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~i~ 477 (612)
.....+.+++|+|++++|++++ .++.|++|
T Consensus 154 -------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 154 -------------------------------------------------LVDQRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred -------------------------------------------------EcCCCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 0011245689999999886554 58999999
Q ss_pred EccCcccccceeecc---ccC--ceEEEEEcCCCcEEEE-EcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcE
Q 007229 478 SISGNTLTEEMVLEK---HRG--AITVIQYSPDVSMFAS-ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTM 551 (612)
Q Consensus 478 d~~~~~~~~~~~~~~---~~~--~i~~~~~s~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 551 (612)
|+.+++......+.. +.. ....++|+|++++++. .+.++.+.+||+.+++.... .. +...+.+++|+|+|++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~-~~-~~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY-LL-VGQRVWQLAFTPDEKY 262 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE-EE-eCCCcceEEECCCCCE
Confidence 999876522222211 111 2356889999998654 34567899999998877532 22 4557999999999999
Q ss_pred EEEe-ecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 552 VATG-SIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 552 l~s~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
|+++ +.++.|++||+.+ + +++..+... .....++|+
T Consensus 263 l~~~~~~~~~i~v~d~~~-~-~~~~~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 263 LLTTNGVSNDVSVIDVAA-L-KVIKSIKVG-RLPWGVVVR 299 (300)
T ss_pred EEEEcCCCCeEEEEECCC-C-cEEEEEEcc-cccceeEeC
Confidence 9876 5689999999998 6 666766644 555777764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=198.34 Aligned_cols=311 Identities=19% Similarity=0.217 Sum_probs=233.6
Q ss_pred ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC--EEEEEeCCCcEEE
Q 007229 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK--KVLTVSADKSAKV 261 (612)
Q Consensus 184 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~i~i 261 (612)
..+++|.+.|.++...|.|.+|++|+.||+++||.+.+|.++..+ ...+.|.+++|+|.+. .|+++ ....+.+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVA-VGECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEE-ecCceEE
Confidence 347899999999999999999999999999999999999999999 6778999999999765 34443 3444666
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
.+. .-+..+..... ..
T Consensus 469 vnp----~~G~~~e~~~t------------------------------------------------------------~e 484 (733)
T KOG0650|consen 469 VNP----IFGDRLEVGPT------------------------------------------------------------KE 484 (733)
T ss_pred eCc----cccchhhhcch------------------------------------------------------------hh
Confidence 554 22211111000 01
Q ss_pred EEEEE----ecCCcEEEEEcCCcee----eeeceecccceEEEEe--eccEEEEecCCC---eEEEEecCCCCCCcccee
Q 007229 342 TILSS----SYDGAIIKWIRGVGYS----SKLEKKYDARIKCLAA--VEEVIFTAGFDN---KVWRVPLCEGECGDAEHI 408 (612)
Q Consensus 342 ~l~~~----~~dg~i~~wd~~~~~~----~~~~~~~~~~i~~~~~--~~~~l~~~~~~~---~i~~~~~~~~~~~~~~~~ 408 (612)
.|.++ ..++.+..|.-..... +.+...|...|..+.+ .|++|++...++ .+.+.++......
T Consensus 485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ----- 559 (733)
T KOG0650|consen 485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ----- 559 (733)
T ss_pred hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-----
Confidence 11111 1233455554432111 1233338889999999 788999887654 6667766654422
Q ss_pred ccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee-cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc
Q 007229 409 DVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI-DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE 487 (612)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 487 (612)
..+ ...+.+.++.|+|...+|++++. ..|+|||+....+ .
T Consensus 560 ------------------------------------~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel--v 600 (733)
T KOG0650|consen 560 ------------------------------------SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL--V 600 (733)
T ss_pred ------------------------------------CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH--H
Confidence 111 13456889999999999999876 5699999988766 5
Q ss_pred eeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
..+......|..++.+|.|.-|+.++.|+.+..+|+.-.....+.+..|...+++++|++.-.++++|+.||++.|+--.
T Consensus 601 KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 66666677899999999999999999999999999998877778888899999999999999999999999999998532
Q ss_pred -------CCCcceeeeecccccC----eeeEEEe-cCceEEEccCCCeEEEE
Q 007229 568 -------KPASSRITIKNAHLGG----VYGVAFM-DDFNVVSSGEDACIRVW 607 (612)
Q Consensus 568 -------~~~~~~~~~~~~h~~~----v~~~~~~-~~~~l~s~~~d~~i~~w 607 (612)
++..-.+..+++|... |....|+ ...+|++++.||+|++|
T Consensus 681 VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1112346778899876 8999999 77789999999999998
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=179.36 Aligned_cols=247 Identities=18% Similarity=0.168 Sum_probs=188.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
...|+.||+-|.+||+|+ +|.|.|||+.+-..-+.+.+|..+|++++||+||+.|+|+|.|..|.+||+..+..+. .+
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~-ri 103 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK-RI 103 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee-EE
Confidence 367999999999999998 8999999999999889999999999999999999999999999999999999998443 33
Q ss_pred eecCCCeEEEEECCCCCEEEEE--eCCCCeeeEEEEEecCCceeeee-ccC-----CceEEEEEEcCCCCEEEEEeecCC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVAC--GDGKGKSFVRAFMWDSGTTVGDF-DGH-----SRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~--~~~~~~~~i~i~~~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
....+|....|.|-.+..+.+ -.... .+..... +++.+ +.. ...-.+..|.+.|+| +++|...|
T Consensus 104 -rf~spv~~~q~hp~k~n~~va~~~~~sp----~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~y-IitGtsKG 175 (405)
T KOG1273|consen 104 -RFDSPVWGAQWHPRKRNKCVATIMEESP----VVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKY-IITGTSKG 175 (405)
T ss_pred -EccCccceeeeccccCCeEEEEEecCCc----EEEEecC--CceeeccCCCccccccccccccccCCCCE-EEEecCcc
Confidence 357899999999965443333 23321 2333332 22221 110 111223368899995 99999999
Q ss_pred eEEEEeCCCCeeeecccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCCC-------Ce--eeeeeccCCccccEEE
Q 007229 171 LVNFYEGPPFKFKLSHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG-------EK--IGEFSSEDGHHGSIYA 240 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~--~~~~~~~~~~~~~v~~ 240 (612)
.+.++|..+.+++..++-.. ..|..+.++..|+.|+.-+.|+.|+.|+++.- +. .+++... -....-.+
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~~Wk~ 254 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKLQWKK 254 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hhhhhhhh
Confidence 99999999999999887666 78999999999999999999999999997621 11 1111100 12234568
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeecc
Q 007229 241 VSWSPDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 241 i~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
++|+.+|.|++.++. ...+++|.- ..|.+++.+.+.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~----~~GsLVKILhG~ 291 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEK----SIGSLVKILHGT 291 (405)
T ss_pred eeecCCccEEEeccccceeEEEEec----CCcceeeeecCC
Confidence 899999999887764 357999998 778887766544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-25 Score=203.40 Aligned_cols=287 Identities=19% Similarity=0.262 Sum_probs=227.4
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 177 (612)
..|..+.+.++|.|+|+.|.+++.++. +++|.-... +....+..+...|.+++.... .|++|+.+++|.+|..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~---ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGD---IRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCc---eEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeC
Confidence 468889999999999999999999983 455554443 444444458888888887655 5999999999999999
Q ss_pred CCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
.+++.-..+....-++++++|+.+|+++|.|+.|-.|++-++.+......+ .+|.++|.++.|+|++++||+.+-||
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l---rgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL---RGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee---cccCCceeeeeEcCCCCEEEEEecCc
Confidence 998877667777889999999999999999999999999999998888888 49999999999999999999999999
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 337 (612)
.|++|++ .++.+..++..-.. .
T Consensus 161 ~v~iw~~----~~~~~~~tl~~v~k-----------------------------------------------------~- 182 (933)
T KOG1274|consen 161 KVQIWDL----QDGILSKTLTGVDK-----------------------------------------------------D- 182 (933)
T ss_pred eEEEEEc----ccchhhhhcccCCc-----------------------------------------------------c-
Confidence 9999999 55554433322110 0
Q ss_pred cCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCccee
Q 007229 338 ISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDL 417 (612)
Q Consensus 338 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (612)
....
T Consensus 183 --n~~~-------------------------------------------------------------------------- 186 (933)
T KOG1274|consen 183 --NEFI-------------------------------------------------------------------------- 186 (933)
T ss_pred --cccc--------------------------------------------------------------------------
Confidence 0000
Q ss_pred eecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCce
Q 007229 418 SLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAI 497 (612)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i 497 (612)
....+..++|+|++..+++...|+.|.+|+..+...........+...+
T Consensus 187 -------------------------------~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~ 235 (933)
T KOG1274|consen 187 -------------------------------LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKF 235 (933)
T ss_pred -------------------------------ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccce
Confidence 0113567899999999999999999999999988875444445566669
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEE
Q 007229 498 TVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 498 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iw 564 (612)
..++|+|+|+|||+++.||.|.|||.++.+. ......|.+++|-|+..-+-.-...|...+|
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999999999999998433 1135689999999998766544444444444
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=188.10 Aligned_cols=289 Identities=17% Similarity=0.263 Sum_probs=215.4
Q ss_pred CCCceeEEEEccCCC--EEEEec-CCEEEEEeCCC----CceeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeec
Q 007229 17 ERGRGILISGNPKTD--TILYCN-GRSVLIRYLDK----PLHVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGT 88 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~--~l~~~~-~~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~ 88 (612)
+.++|++++|+|... .+|+|. .|+|-+||+.+ ..-+..+..|..+|.++.|+|. -..+.+.|.||+|++=|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 457999999999766 556665 69999999952 2335668899999999999994 467888899999999999
Q ss_pred CCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 89 HNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
+.... ....+......+..+.|+.+...++++..-+ .+.+++..+ +.....+.-|...|..++++|..++.++|+
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence 98752 1112223455788899999998888887766 357777775 445777888999999999999999999999
Q ss_pred ecCCeEEEEeCCCCeeee----cccccccceEEEEECCCCCeEEEEEcCCcEEEEecC----CCCeeeeeeccCCccc--
Q 007229 167 GEDFLVNFYEGPPFKFKL----SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK----SGEKIGEFSSEDGHHG-- 236 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~-- 236 (612)
+.|++.+|||++...... ....|...|.+..|||.+-.|++.+.|..|+|||.. .......+.-...+..
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl 421 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL 421 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccc
Confidence 999999999987654333 244799999999999988889999999999999983 3444444421111111
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC-EEEEEEcCCEEEEEEc
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND-HLITVSLGGIISIFSA 313 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 313 (612)
......|.|+..+++++-.-..|-++|- ..++.+..+..+....+. .+..+...+. .++.++..|.|.+|..
T Consensus 422 T~fKA~W~P~~~li~vg~~~r~IDv~~~----~~~q~v~el~~P~~~tI~-~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVVGRYPRPIDVFDG----NGGQMVCELHDPESSTIP-SVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cchhheeCCCccEEEEeccCcceeEEcC----CCCEEeeeccCccccccc-cceeecccccceeccCCccceEEEEec
Confidence 2334579999999999998889999998 778877776655432222 1222222344 4555566788888863
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-27 Score=212.24 Aligned_cols=232 Identities=17% Similarity=0.250 Sum_probs=208.6
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
|...+.++..-..++.+++|+ +..+-+|.+.....+..|.+|+.+|.++.|+++..+|++|+.+|+|++||++..+ ..
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-IV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-hh
Confidence 445667777767788888888 5677799999888888899999999999999999999999999999999999988 66
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
+.+.+|...+..+.|+|-+.+.+.++.+.+ +.+|+.....+.+.+.+|...|..++|+|+|++ ++.+++|.++++|
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd---~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTD---LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW-VASGGEDNTVKIW 181 (825)
T ss_pred hhhhccccCcceeeeccceEEecccccccc---ceehhhhccCceeeecCCcceeEEEeecCCCce-eeccCCcceeeee
Confidence 699999999999999999999999888874 456666667899999999999999999999995 9999999999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
|+..|+....+..|++.+.++.|+|..-++++|+.|+++++||+++.+.+... +.....|.+.+|+|++..+++|..
T Consensus 182 d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~---~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 182 DLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG---KPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc---CCccCCceeeeecCCceeeecCch
Confidence 99999999999999999999999999999999999999999999988888777 356789999999999998888765
Q ss_pred C
Q 007229 256 D 256 (612)
Q Consensus 256 d 256 (612)
.
T Consensus 259 ~ 259 (825)
T KOG0267|consen 259 I 259 (825)
T ss_pred h
Confidence 4
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=173.60 Aligned_cols=261 Identities=21% Similarity=0.346 Sum_probs=191.6
Q ss_pred CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
.+|..-|.++.|.+-|+.+++++.|++++|||...+..+-.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~-------------------------------------- 51 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC-------------------------------------- 51 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE--------------------------------------
Confidence 378888999999999999999999999999997322222222
Q ss_pred EcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCC
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN 390 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 390 (612)
....+.|.+.|..+.|. +.-|+.+++++.|+++.+|.-....... +.
T Consensus 52 --------Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~----~~-------------------- 99 (361)
T KOG2445|consen 52 --------TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA----HG-------------------- 99 (361)
T ss_pred --------eeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc----cc--------------------
Confidence 23456799999999998 7678999999999999999754211100 00
Q ss_pred eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc--CCCeEEEE
Q 007229 391 KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP--DGSEAIVG 468 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~ 468 (612)
+-|.. ..........++.+.|.| -|-.||++
T Consensus 100 --~~Wv~---------------------------------------------~ttl~DsrssV~DV~FaP~hlGLklA~~ 132 (361)
T KOG2445|consen 100 --RRWVR---------------------------------------------RTTLVDSRSSVTDVKFAPKHLGLKLAAA 132 (361)
T ss_pred --ceeEE---------------------------------------------EEEeecCCcceeEEEecchhcceEEEEe
Confidence 00100 000111335689999998 46789999
Q ss_pred ecCCeEEEEEccCccc----ccce-------eeccccCceEEEEEcC---CCcEEEEEcCC-----CeEEEEecCCcce-
Q 007229 469 GQNGKLHIYSISGNTL----TEEM-------VLEKHRGAITVIQYSP---DVSMFASADGN-----REAIVWDRVSKEV- 528 (612)
Q Consensus 469 ~~dg~v~i~d~~~~~~----~~~~-------~~~~~~~~i~~~~~s~---~~~~l~~~~~d-----~~i~iwd~~~~~~- 528 (612)
+.||.++||+....-- .... ....+..+..|+.|+| ..++||.|+.+ +.++||.......
T Consensus 133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 9999999998753210 1111 2235677889999998 34688888776 5789997755441
Q ss_pred --eeecccccccceeEEEecCCC----cEEEEeecCcEEEEEEccCCC------------------cceeeeecccccCe
Q 007229 529 --KLNNMLFHTARINCLAWSPSS----TMVATGSIDTCVIIYEIGKPA------------------SSRITIKNAHLGGV 584 (612)
Q Consensus 529 --~~~~~~~~~~~i~~~~~s~~~----~~l~s~~~d~~i~iwd~~~~~------------------~~~~~~~~~h~~~v 584 (612)
....+.+|..+|++++|.|+- .+||+++.|| |+||.+.... .+.+..+..|+++|
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 234567899999999999953 4799999999 9999997300 13355688999999
Q ss_pred eeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 585 YGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 585 ~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
..+.|. -|..|.|.|.||+||+|...
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999999 99999999999999999753
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=204.10 Aligned_cols=288 Identities=15% Similarity=0.239 Sum_probs=227.8
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCC----ceeeEeccCC---CceEEEEECC-CCCEEEEeeCcCeEEEeecC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKP----LHVEFYGEHG---YPVTVARYSP-NGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~----~~~~~~~~h~---~~v~~~~~s~-d~~~las~~~d~~i~iwd~~ 89 (612)
.....+++..++-..|++++...+.||.++.. .+...+..-. ..+..|.|.. +.++||+++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45678899999999999999888888876532 2222222211 2344567775 56899999999999999998
Q ss_pred C--CceeeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 90 N--GFVLKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 90 ~--~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
. ...+...+..|...+.++.|++-. .+|++|+.|+ ++++|++...+...++.+..+.|..+.|+|...+.++++
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg---~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDG---TVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCc---eEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 7 333556888999999999999854 5778888888 689999999999999999999999999999888889999
Q ss_pred ecCCeEEEEeCCCC-eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 167 GEDFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 167 ~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
.+.|.+++||++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+++....... ....++..++|-|
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP 273 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRP 273 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceeeeeeecc
Confidence 99999999999764 45566889999999999999999999999999999999986654333211 4567899999999
Q ss_pred CCCE-EEEEe--CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 246 DGKK-VLTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 246 ~~~~-l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
+..+ |++++ .|-.|++||+ +.+..+...
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDv-------------------------------------------------rRPYIP~~t 304 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDV-------------------------------------------------RRPYIPYAT 304 (839)
T ss_pred CccchhhhhhccccceEEEEee-------------------------------------------------cccccccee
Confidence 7654 55554 3667888888 444455567
Q ss_pred ecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
+..|...++.++|...+...+.+++.||++..-..++
T Consensus 305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 7789999999999865578899999999887654443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=175.60 Aligned_cols=293 Identities=15% Similarity=0.221 Sum_probs=215.0
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
..|+.|++.|. +||.|..||.|.+||+.+...-..+.+|..+|.+++||+||+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri- 103 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI- 103 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-
Confidence 78999999999 5999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 230 SEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
....+|+...|+|..+ .+++.-.+..-.+-++ .. ..+......
T Consensus 104 ---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~----s~--~~h~~Lp~d--------------------------- 147 (405)
T KOG1273|consen 104 ---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDF----SD--PKHSVLPKD--------------------------- 147 (405)
T ss_pred ---EccCccceeeeccccCCeEEEEEecCCcEEEEe----cC--CceeeccCC---------------------------
Confidence 7889999999999433 3333333444455555 22 111111000
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc-cceEEEEe--eccEEEE
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD-ARIKCLAA--VEEVIFT 385 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~--~~~~l~~ 385 (612)
... ..+.+.+..+.+..++++++|...|.+.++|..+.++........ ..|..+.+ .++.++.
T Consensus 148 -------~d~-------dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii 213 (405)
T KOG1273|consen 148 -------DDG-------DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII 213 (405)
T ss_pred -------Ccc-------ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEE
Confidence 000 000111111334448999999999999999999998887766544 67777777 8899999
Q ss_pred ecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE
Q 007229 386 AGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA 465 (612)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 465 (612)
-+.|..||.|++..-... +.+..+ .....++.+-.+.+-.+++||.+|.|+
T Consensus 214 NtsDRvIR~ye~~di~~~--------------------------~r~~e~---e~~~K~qDvVNk~~Wk~ccfs~dgeYv 264 (405)
T KOG1273|consen 214 NTSDRVIRTYEISDIDDE--------------------------GRDGEV---EPEHKLQDVVNKLQWKKCCFSGDGEYV 264 (405)
T ss_pred ecCCceEEEEehhhhccc--------------------------CccCCc---ChhHHHHHHHhhhhhhheeecCCccEE
Confidence 999999999998632211 000000 000001111133456789999999999
Q ss_pred EEEec-CCeEEEEEccCcccccceeecccc-CceEEEEEcCCCcEEEEEcCCCeEEEEecCCc
Q 007229 466 IVGGQ-NGKLHIYSISGNTLTEEMVLEKHR-GAITVIQYSPDVSMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 466 ~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 526 (612)
+.|+. ...++||....|.+ ++.+.+.. .....+.|+|-...+++- ..|.+++|.....
T Consensus 265 ~a~s~~aHaLYIWE~~~GsL--VKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 265 CAGSARAHALYIWEKSIGSL--VKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred EeccccceeEEEEecCCcce--eeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 88764 45899999999988 78888877 567889999998888888 6789999986543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=179.72 Aligned_cols=330 Identities=18% Similarity=0.264 Sum_probs=226.8
Q ss_pred eeeecCCCeEEEEECC-----CCCEEEEEeCCCCeeeEEEEEecCCc---eeeee--ccCCceEEEEEEcCC---CCEEE
Q 007229 97 EFKVLSGRIDDLQWSP-----DGLRIVACGDGKGKSFVRAFMWDSGT---TVGDF--DGHSRRVLSCEFKPT---RPFRI 163 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~-----~~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~--~~~~~~v~~~~~~~~---~~~~l 163 (612)
....|..+|..++|.+ +-+.++++|.+. +.++...... .++.. ..|.+....++|+-+ ++-++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~r----vtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~l 108 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNR----VTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFL 108 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcE----EEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeE
Confidence 3446778899999985 234556665553 6677666332 23332 236777788888643 33368
Q ss_pred EEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
|.++.-|.|++.|+.++++...+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..+.-..+|...|.++.
T Consensus 109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 888899999999999999999999999999999999965 6889999999999999999999999988789999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC-ce
Q 007229 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA-PL 321 (612)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~ 321 (612)
|+++|.++++++.|.++++|++ ...+....++.... + +.+++-+-+.......+ ..
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l----~~~~f~~~lE~s~~-----------~--------~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRL----NVKEFKNKLELSIT-----------Y--------SPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred EcCCCCeeeccCCcceEEEEec----ChhHHhhhhhhhcc-----------c--------CCCCccCcCCcccccccccc
Confidence 9999999999999999999999 43332222221100 0 00000000000000000 11
Q ss_pred eecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC-CceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCC
Q 007229 322 SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG-VGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~ 400 (612)
+..-|...|.++.|. ++++++-+-++.|..|... -.+............
T Consensus 246 t~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~--------------------------- 295 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT--------------------------- 295 (385)
T ss_pred ccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccce---------------------------
Confidence 334588888888888 6889998888999999662 111100000000000
Q ss_pred CCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec-ccceEE--EEEEccCCCeEEEEecCCeEEEE
Q 007229 401 ECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID-LGFTVT--ACAIAPDGSEAIVGGQNGKLHIY 477 (612)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~--~~~~s~~~~~l~~~~~dg~v~i~ 477 (612)
..+.+++ ....|. ..+|.|-++.||.|.+.|.|++|
T Consensus 296 -----------------------------------------Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 296 -----------------------------------------TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred -----------------------------------------eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 0011111 111233 35667788999999999999999
Q ss_pred EccCcccccceeecc--ccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 478 SISGNTLTEEMVLEK--HRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 478 d~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
|++..+.....++.. ....|...+||.|+..|+...+|++|.-||..
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999877633333332 23569999999999999999999999999864
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=193.35 Aligned_cols=300 Identities=19% Similarity=0.205 Sum_probs=223.8
Q ss_pred cCCCceEE--EEECC---CCCEEEEeeCcCeEEEeecCCCce-----eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe
Q 007229 57 EHGYPVTV--ARYSP---NGEWIASADVSGSVRIWGTHNGFV-----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK 126 (612)
Q Consensus 57 ~h~~~v~~--~~~s~---d~~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 126 (612)
.|.-++.- ..|++ ....||.+.+||.|.++|...... .......|...|..+.|-|....|++++.|.
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs-- 122 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS-- 122 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCc--
Confidence 34444444 66776 346899999999999999876542 1345668999999999999667788888877
Q ss_pred eeEEEEEecCCceeee--eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-----------------------
Q 007229 127 SFVRAFMWDSGTTVGD--FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK----------------------- 181 (612)
Q Consensus 127 ~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----------------------- 181 (612)
.+++|+.+.++.... +.+|...|.+++|.|.++.++++|+.||.|.|||++-..
T Consensus 123 -T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 123 -TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred -eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 578888888887777 899999999999999999899999999999999964321
Q ss_pred ----eeecccccccceEE---EEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeecc-----CCc---cccEEEEEEec
Q 007229 182 ----FKLSHREHSNFVNC---IRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSE-----DGH---HGSIYAVSWSP 245 (612)
Q Consensus 182 ----~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~-----~~~---~~~v~~i~~~~ 245 (612)
.+...+.+...|.+ +.+..|...||+++. |+.|+|||++........... ..| .-.+.++....
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 01112234444555 556678889999888 999999999986655443211 012 34577777877
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
.|.+|++.+.|+.|.+|++... ...++..+.... ......-....+++..+++|+.+...++|.+...+.....+.+
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~--s~sP~~~~sg~~-~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G 358 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSL--SISPVAEFSGKL-NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG 358 (720)
T ss_pred CCCeEEEEecCCcEEEEecccc--CcCchhhccCcc-cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC
Confidence 8899999889999999999321 112222222111 0111122344566899999999999999999999999999999
Q ss_pred cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 326 HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
|...|+.++|.+..-.-+++++.|..+++|++..+-.
T Consensus 359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred cceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 9999999999955567788889999999999965543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=187.69 Aligned_cols=287 Identities=14% Similarity=0.168 Sum_probs=215.1
Q ss_pred CeEEEeecCCCceeeeeeeecC--CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce----eeeeccCCceEEEEE
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLS--GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCE 154 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~ 154 (612)
..+++||+...+. ...+..|. ..+.++.|+.... |++++..+.. .+..|....+ ...-+...+.-.|++
T Consensus 12 d~~kl~D~s~~~~-~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk---~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 12 DKTKLSDFSDLET-KSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDK---VMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred CceEEeecccccC-ccccccCCCCCcceeeeccccce-EEEeecCCce---eEEEecccCCCCccceeeccccchHHHHh
Confidence 3799999987652 22333332 3588999988765 6666655543 3444442222 111111222444555
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
......| +++|+..+.|+|||++...+.+.+++|...|+++.++....|||+++..|.|.|..+.++.....+. .+.
T Consensus 87 ~~s~S~y-~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~--~~s 163 (673)
T KOG4378|consen 87 CASQSLY-EISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT--IDS 163 (673)
T ss_pred hhhccee-eeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee--cCC
Confidence 5555564 9999999999999999888888899999999999999999999999999999999999999888883 233
Q ss_pred cccEEEEEEecCCCE-EEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 235 HGSIYAVSWSPDGKK-VLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
...+.-+.|+|..++ |.+++.+|.|.+||+ ....+..
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv----~g~sp~~-------------------------------------- 201 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDV----QGMSPIF-------------------------------------- 201 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEec----cCCCccc--------------------------------------
Confidence 456778999997665 556788899999998 4333332
Q ss_pred CCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEE
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVW 393 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~ 393 (612)
.....|..+...++|++.+..+|++.+.|..|.+||..........
T Consensus 202 -------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l--------------------------- 247 (673)
T KOG4378|consen 202 -------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL--------------------------- 247 (673)
T ss_pred -------chhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee---------------------------
Confidence 2334689999999999777899999999999999998754432211
Q ss_pred EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCe
Q 007229 394 RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGK 473 (612)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 473 (612)
....+.++++|+++|.+|+.|...|.
T Consensus 248 ------------------------------------------------------~y~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 248 ------------------------------------------------------TYSHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred ------------------------------------------------------eecCCcceeeecCCceEEEeecCCce
Confidence 11236788999999999999999999
Q ss_pred EEEEEccCcccccceeeccccCceEEEEEcCCC
Q 007229 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDV 506 (612)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (612)
|..||++..+ .++..+..|...|++++|-|..
T Consensus 274 ~i~YD~R~~k-~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTK-APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEecccCC-CCceEeeecccceeEEEeeecc
Confidence 9999998655 4578899999999999998764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=191.33 Aligned_cols=292 Identities=17% Similarity=0.156 Sum_probs=227.6
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCC--EEEEeeCc------------
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGE--WIASADVS------------ 80 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~--~las~~~d------------ 80 (612)
.|++.|.+++..|.|.+||+|+ +|+|+||.+.+|.+++.+. -.+.|.|++|+|.+. .||++-..
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 5899999999999999999999 7999999999999999776 566999999999764 44444222
Q ss_pred --------------------CeEEEeecCCCcee---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 81 --------------------GSVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 81 --------------------~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
+.+..|.-...+++ ....-.|...|.++.|+..|.||++...++....+.|+.+...
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~ 556 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR 556 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc
Confidence 22334443322111 1244457889999999999999999988777767888888877
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+...-|....+.|.++.|+|...+ ++.++. ..|++||+..+++++.+......|..|+.+|.|..|+.++.|+.++.+
T Consensus 557 ~sQ~PF~kskG~vq~v~FHPs~p~-lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 557 KSQSPFRKSKGLVQRVKFHPSKPY-LFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWF 634 (733)
T ss_pred cccCchhhcCCceeEEEecCCCce-EEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence 777777778889999999999996 555543 469999999999888888888899999999999999999999999999
Q ss_pred ecCCCC-eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 218 DGKSGE-KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 218 d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+.-.. +.+.+ ..|...+++++|++.-.++++++.||++.++.- .-.. .+..
T Consensus 635 DldlsskPyk~l---r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg----~VY~---Dl~q----------------- 687 (733)
T KOG0650|consen 635 DLDLSSKPYKTL---RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG----MVYN---DLLQ----------------- 687 (733)
T ss_pred EcccCcchhHHh---hhhhhhhhhhhhccccceeeeecCCCcEEEEee----eeeh---hhhc-----------------
Confidence 998654 34444 479999999999999999999999999999864 1000 0000
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccc----eeEEEEEecCCcEEEEEecCCcEEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKN----VSTLTALKISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~~w 355 (612)
...-.++..+++|... |....|++. ..+|++++.||+|++|
T Consensus 688 -----------------npliVPlK~L~gH~~~~~~gVLd~~wHP~-qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 -----------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPR-QPWLFSAGADGTIRLF 732 (733)
T ss_pred -----------------CCceEeeeeccCceeecccceEeecccCC-CceEEecCCCceEEee
Confidence 0111234566777765 777778842 7899999999999998
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=177.56 Aligned_cols=266 Identities=17% Similarity=0.230 Sum_probs=191.9
Q ss_pred eccCCCceEEEEECC-----CCCEEEEeeCcCeEEEeecCCCc--eeeeeee--ecCCCeEEEEECCCC----CEEEEEe
Q 007229 55 YGEHGYPVTVARYSP-----NGEWIASADVSGSVRIWGTHNGF--VLKNEFK--VLSGRIDDLQWSPDG----LRIVACG 121 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~-----d~~~las~~~d~~i~iwd~~~~~--~~~~~~~--~~~~~i~~~~~s~~~----~~l~~~~ 121 (612)
.+.|..+|..++|.+ +-+.+|+++.+ .+.+|...... ++.+... .|......++|+-|. .+||++|
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457889999999986 33567777654 78888877544 2222221 256678888887653 3677777
Q ss_pred CCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc---cccccceEEEEE
Q 007229 122 DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH---REHSNFVNCIRF 198 (612)
Q Consensus 122 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 198 (612)
..+ .|+|.+..+++....+.+|...|..+.|.|+.+.++++++.|.+||+|++++..++..+ .+|.+.|.++.|
T Consensus 113 ~~G---vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 113 YLG---VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred cee---EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 655 68888888999999999999999999999999889999999999999999999998875 579999999999
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCeeeee-------------------------eccCCccccEEEEEEecCCCEEEEE
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKIGEF-------------------------SSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
+++|.++++++.|.++++|++...+....+ ....-|...|-++.|. |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 999999999999999999999843321111 1122355556666665 5778887
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+-++.|..|.. ++.-..+...... +........+.-....++-+
T Consensus 268 scenaI~~w~p------gkl~e~~~~vkp~------------------------------es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 268 SCENAIVCWKP------GKLEESIHNVKPP------------------------------ESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred ccCceEEEEec------chhhhhhhccCCC------------------------------ccceeeeeEeccCccceEEE
Confidence 77888888876 2221111100000 00111223334455567777
Q ss_pred EEE-ecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 334 TAL-KISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 334 ~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
.|. +.-+++|+.|.+.|.+.+||++...+
T Consensus 312 rf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 312 RFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred EEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 777 66678888888889999888887654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=169.83 Aligned_cols=267 Identities=16% Similarity=0.263 Sum_probs=194.0
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce---eeeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeeeE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV---LKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFV 129 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i 129 (612)
-.+|..-|.++.|.+.|+.+|+++.|++|+|||...... +....+.|.+.|..+.|.+ -|+.+|+++.|+ .+
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr---tv 85 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR---TV 85 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC---ce
Confidence 458999999999999999999999999999999754433 5557789999999999976 589999999999 35
Q ss_pred EEEEecC---------CceeeeeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCC------Ceeeeccc------
Q 007229 130 RAFMWDS---------GTTVGDFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPP------FKFKLSHR------ 187 (612)
Q Consensus 130 ~i~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~------~~~~~~~~------ 187 (612)
.||.-+. .....++......|+.+.|.|.. ...+++++.||.+|||+... ..++..++
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 6665531 12344566778899999999964 24699999999999997543 33333333
Q ss_pred -ccccceEEEEECCC---CCeEEEEEcC-----CcEEEEecCCCC-eeeeeeccCCccccEEEEEEecC----CCEEEEE
Q 007229 188 -EHSNFVNCIRFSPD---GSKLISVSSD-----RKGLIYDGKSGE-KIGEFSSEDGHHGSIYAVSWSPD----GKKVLTV 253 (612)
Q Consensus 188 -~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~ 253 (612)
.+..+..|+.|+|. ..+|+.|+.+ +.++||....+. .........+|..+|+.++|.|+ -..|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 46677899999974 4578877765 478899766543 44444334589999999999995 3478999
Q ss_pred eCCCcEEEEEeecCCCCCe-eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 254 SADKSAKVWEILEDGSGGR-VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
+.|| |+||++ .... .+..-.... ...-+ .-.-..+..+.+|...|..
T Consensus 246 ~kDg-v~I~~v----~~~~s~i~~ee~~~--------------------~~~~~-------~l~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 246 TKDG-VRIFKV----KVARSAIEEEEVLA--------------------PDLMT-------DLPVEKVSELDDHNGEVWR 293 (361)
T ss_pred ecCc-EEEEEE----eeccchhhhhcccC--------------------CCCcc-------ccceEEeeeccCCCCceEE
Confidence 9999 999999 3211 110000000 00000 0011223456789999999
Q ss_pred EEEE-ecCCcEEEEEecCCcEEEEEcC
Q 007229 333 LTAL-KISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 333 ~~~~-~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
+.|. . +..|.+.+.||.|++|...
T Consensus 294 v~wNmt--GtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 294 VRWNMT--GTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEeee--eeEEeecCCCceeeehhhh
Confidence 9999 7 8999999999999999654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=176.60 Aligned_cols=406 Identities=15% Similarity=0.152 Sum_probs=253.2
Q ss_pred EEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcCeEEEeecCCCceeeeeeeec
Q 007229 23 LISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
-.+|||+|+++|++++..+.|.|.++-+..+.+. --..|.-+.|+.|.-+++. ...|+.|.+|++...+ -...+...
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecce-eEEEeccC
Confidence 4789999999999999999999999987766554 3567888999998876654 5788999999999887 44466777
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec-CC--eEEEEeCC
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE-DF--LVNFYEGP 178 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~ 178 (612)
+.++.+++|||||+.++..++-.- .+++|...+.+... ++-....+..++|+|+|++ .+.+++ |. .+.+...+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~l--riTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f-~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDL--RITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQF-CAILSRRDCKDYVQISSCK 166 (447)
T ss_pred CCcceeeeECCCcceEeeeeccee--EEEEEEeccceeEE-ecccccCceeEEECCCCce-eeeeecccHHHHHHHHhhH
Confidence 889999999999998888776553 35666666554432 2323345688999999996 555543 32 22222233
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS 258 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 258 (612)
....+..+.-.+-..+.+.|+|||+.|++ ||.--.-.+..+ ...-.+..++|+|.+++|++|+.|+.
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY----e~~lG~k~v~wsP~~qflavGsyD~~ 233 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY----ERGLGLKFVEWSPCNQFLAVGSYDQM 233 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee----eeccceeEEEeccccceEEeeccchh
Confidence 34444555555667889999999988775 442211112222 22346889999999999999999999
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI 338 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (612)
+++.+- -+-+....|..... -.+....+.. . .....-.....++.|.+
T Consensus 234 lrvlnh----~tWk~f~eflhl~s--------------------~~dp~~~~~~-k------e~~~~~ql~~~cLsf~p- 281 (447)
T KOG4497|consen 234 LRVLNH----FTWKPFGEFLHLCS--------------------YHDPTLHLLE-K------ETFSIVQLLHHCLSFTP- 281 (447)
T ss_pred hhhhce----eeeeehhhhccchh--------------------ccCchhhhhh-h------hhcchhhhcccccccCC-
Confidence 998775 33333322211100 0000000000 0 00000000111222221
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceee
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLS 418 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (612)
.+ -...+|..... +|.... .+. +
T Consensus 282 -~~--------~~a~~~~~se~---------------------------------~YE~~~-------------~pv--~ 304 (447)
T KOG4497|consen 282 -TD--------LEAHIWEESET---------------------------------IYEQQM-------------TPV--K 304 (447)
T ss_pred -Cc--------cccCccccchh---------------------------------hhhhhh-------------cce--e
Confidence 00 00111110000 000000 000 0
Q ss_pred ecCCCCcEEEEEeeccEEEeecccceee-ecccceEEEEEEccCCCeEEEEecC--CeEEEEEccCcccccceeeccccC
Q 007229 419 LALSSPELALVSTESGVILLDSLKVMSK-IDLGFTVTACAIAPDGSEAIVGGQN--GKLHIYSISGNTLTEEMVLEKHRG 495 (612)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~ 495 (612)
+...++... ......+.-++||+|..++++-... +.+.+||++..++ ...-....
T Consensus 305 -------------------~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l---~avLiQk~ 362 (447)
T KOG4497|consen 305 -------------------VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL---HAVLIQKH 362 (447)
T ss_pred -------------------eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh---hhhhhhcc
Confidence 000000000 0123357779999999999986544 5799999998776 33333456
Q ss_pred ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcE
Q 007229 496 AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTC 560 (612)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~ 560 (612)
+|....|.|....|+.+.....+++|.......+.. ....-.|..+.|..+|..++..+.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v--P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV--PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec--CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999998888888778899999887665532 223467999999999999999999873
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=181.48 Aligned_cols=436 Identities=15% Similarity=0.215 Sum_probs=267.8
Q ss_pred EEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEEC
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWS 111 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 111 (612)
++++.+||.+.|.+ +.++..+.+..|.+.|.|-.|+|||.-|++++.||.|++|.-..- +...+.....+|+|++|.
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARWA 154 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEEC
Confidence 44555588888876 446777778999999999999999999999999999999986654 556667778899999999
Q ss_pred CCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc
Q 007229 112 PDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN 191 (612)
Q Consensus 112 ~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 191 (612)
|++..++.+..+. +.|........+-..+.|.+-|.++.|+|..+ ++++|++|-..++||.. |..+..-..|+.
T Consensus 155 p~S~~vl~c~g~h----~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 155 PNSNSIVFCQGGH----ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-GANLFTSAAEEY 228 (737)
T ss_pred CCCCceEEecCCe----EEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc-CcccccCChhcc
Confidence 9999998887775 56777777778888999999999999999998 79999999999999965 555666678999
Q ss_pred ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC
Q 007229 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG 271 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 271 (612)
+|++++|.|+ +.++.++. ++++ + .....+.|..++|++||..++.|+..|.+.+=.+. ..
T Consensus 229 ~ITSva~npd-~~~~v~S~-nt~R------------~--~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~i----eq 288 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSY-NTAR------------F--SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAI----EQ 288 (737)
T ss_pred ceeeeeeccc-cceeeeee-eeee------------e--cCCCccceEEEEEcCCCceeeccccCceEEEeeee----hh
Confidence 9999999999 55555553 4454 2 22567889999999999999999998887654431 11
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 351 (612)
+... .+.-++......|.+-|+.+.-. ..-.....+......- ..|+++. ...
T Consensus 289 ~l~~--------------------~n~~~t~~~r~~I~vrdV~~~v~---d~LE~p~rv~k~sL~Y---~hLvvaT-s~q 341 (737)
T KOG1524|consen 289 QLVS--------------------GNLKATSKSRKSITVRDVATGVQ---DILEFPQRVVKFSLGY---GHLVVAT-SLQ 341 (737)
T ss_pred hhhh--------------------ccceeEeeccceEEeehhhhhHH---HHhhCccceeeeeece---eEEEEEe-ccE
Confidence 1000 00111111122222222221111 1111222333333322 2333322 134
Q ss_pred EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST 431 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
+++|.-.....+.........+. +...++..+.......+.++....
T Consensus 342 vyiys~knwntpiiidgre~tr~-lieq~ek~fli~dgsSi~lytyeg-------------------------------- 388 (737)
T KOG1524|consen 342 VYIYSEKNWNTPIIIDGREDTRN-LIEQGEKYFLILDGSSIWLYTYEG-------------------------------- 388 (737)
T ss_pred EEEEecCCccCcEEEeccccchh-HhhhhhhheEEecCcEEEEEEecC--------------------------------
Confidence 55555443322211110110000 000111111111122222222211
Q ss_pred eccEEEeecccceeeecccce----EEEEEEccCCCeEEEE--ecCCeEEEEEc-cCcccccceeeccccCceEEEEEcC
Q 007229 432 ESGVILLDSLKVMSKIDLGFT----VTACAIAPDGSEAIVG--GQNGKLHIYSI-SGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~----i~~~~~s~~~~~l~~~--~~dg~v~i~d~-~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
+.......++. .+.-.+|-....|+.- .....+++||. .+++...-..+-.|...|..++...
T Consensus 389 ----------R~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldq 458 (737)
T KOG1524|consen 389 ----------RLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQ 458 (737)
T ss_pred ----------ceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhc
Confidence 11111111100 0000111112234432 22346788888 7776544444445777777777654
Q ss_pred ----CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 505 ----DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 505 ----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+.+.+|.-+.++.+.|=..++.....+.+. -...|..++|+..- -+.+|-.|+++.||-++.
T Consensus 459 kG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~K-iGTmVhtLawndtt-NiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 459 KGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYK-IGTMVHTLAWNDTT-NILCGLQDTCFSVWYYPN 524 (737)
T ss_pred cCCCccceEEEEecCCcEEEEeehhcCchhhhhh-hhhhhhhhhhcccc-ceeeeeccceEEEEEcCC
Confidence 667888888888888877765443322222 45678899998554 466788999999998876
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=176.07 Aligned_cols=165 Identities=22% Similarity=0.313 Sum_probs=128.7
Q ss_pred CCceEEEEECCCCC-EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 59 GYPVTVARYSPNGE-WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 59 ~~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
..+|..+.|.++.. .||||+.|..|+||.+.....-. ....+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------~~~~V----------------------------- 55 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------GDMKV----------------------------- 55 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------CceeE-----------------------------
Confidence 56889999999776 99999999999999987654210 00000
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--------C--------CeeeecccccccceEEEEECCC
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--------P--------FKFKLSHREHSNFVNCIRFSPD 201 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--------~--------~~~~~~~~~~~~~v~~~~~s~~ 201 (612)
+-+..+..|...|+++.|+|+|. +|++|+.+|.|.+|... + ......+.+|...|..++|+|+
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 01223455667777777777776 57777777777777543 1 2334557789999999999999
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
++++++++.|..+++||+..|+....+ ..|...+..++|.|-++++++-+.|...+.+.+
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~---~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAIL---DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeec---cccccccceeecchhhhhhhhhccCcccceeee
Confidence 999999999999999999999999888 589999999999999999999999987777776
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=184.15 Aligned_cols=236 Identities=16% Similarity=0.206 Sum_probs=192.6
Q ss_pred ceeEEEEccCCCEEEEec---CCEEEEEeCCC--CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 20 RGILISGNPKTDTILYCN---GRSVLIRYLDK--PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.+.++.|+.... |++++ +..+++|.-.. ++....-......-.|++......|+++|+..+.|+|||++... +
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL-I 113 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH-H
Confidence 488899988776 44443 56888886543 23332211122244566666666999999999999999999554 6
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
.+.++.|+..|+++.+.....|||+++..++ |.|....++.....|... ...|.-+.|+|..+++|.+++.+|.|.
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd---iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGD---IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCc---EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 7789999999999999999999999998884 566666677777777654 456779999999999999999999999
Q ss_pred EEeCCCCeeeec-ccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 174 FYEGPPFKFKLS-HREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 174 ~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
+||+....++.. ...|..+...++|+|.. .+|++.+.|..|.+||.........+ ....+...++|.++|.+|+
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l----~y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL----TYSHPLSTVAFSECGTYLC 266 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee----eecCCcceeeecCCceEEE
Confidence 999998887776 56799999999999954 57788999999999999988887777 6778999999999999999
Q ss_pred EEeCCCcEEEEEe
Q 007229 252 TVSADKSAKVWEI 264 (612)
Q Consensus 252 ~~~~dg~i~iw~~ 264 (612)
.|...|.|..||+
T Consensus 267 aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 267 AGNSKGELIAYDM 279 (673)
T ss_pred eecCCceEEEEec
Confidence 9999999999999
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=180.30 Aligned_cols=305 Identities=15% Similarity=0.133 Sum_probs=223.3
Q ss_pred CceeeeeccCCceEEEEEEcCCCC-EEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECCC-CCeEEEEEc
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRP-FRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSPD-GSKLISVSS 210 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 210 (612)
-......+-+.++|++++|+|..+ .++++|...|.|-+||+.+.+ -+..+..|..+|.+|.|+|. ...+++.+.
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 334445667889999999999876 689999999999999995332 23446789999999999994 468899999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
||+|+.-|++.+.....+.. ......+..+.|+.+...++.+..=|.+.+||.+
T Consensus 256 DGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R------------------------- 309 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR------------------------- 309 (498)
T ss_pred CceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEee-------------------------
Confidence 99999999987654444421 1344567778888877778878777788888883
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
..+.....+.-|...|..+++.+....++++++.|++.++||++.-.....
T Consensus 310 ------------------------~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----- 360 (498)
T KOG4328|consen 310 ------------------------TDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----- 360 (498)
T ss_pred ------------------------cCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----
Confidence 222223344557789999999977789999999999999999875432111
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
..+..++|.
T Consensus 361 -----------------------------------------------------------------------p~lst~~Hr 369 (498)
T KOG4328|consen 361 -----------------------------------------------------------------------PFLSTLPHR 369 (498)
T ss_pred -----------------------------------------------------------------------cceeccccc
Confidence 023445567
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEcc--CcccccceeeccccC------ceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSIS--GNTLTEEMVLEKHRG------AITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
..|.+..|||++..|++.+.|..|+|||.. +....+...+. |+. .....+|.|+..++++|-.-..|-|+|
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 789999999998889999999999999984 11111122222 221 133458999999999999999999999
Q ss_pred cCCcceeeecccccccceeE-EEecCCCcEEE-EeecCcEEEEEEccC
Q 007229 523 RVSKEVKLNNMLFHTARINC-LAWSPSSTMVA-TGSIDTCVIIYEIGK 568 (612)
Q Consensus 523 ~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~-s~~~d~~i~iwd~~~ 568 (612)
-..++.+.+........|.+ ..|+|-+..++ -++..|.|+||--+.
T Consensus 449 ~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 449 GNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred CCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 99998765544434445555 47999877454 445678888886543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-20 Score=184.79 Aligned_cols=371 Identities=24% Similarity=0.386 Sum_probs=283.0
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc-eeeEeccCC-CceEEEEE-CCCCC-EEEEeeC-cCeEEEeec
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL-HVEFYGEHG-YPVTVARY-SPNGE-WIASADV-SGSVRIWGT 88 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~-~~~~~~~h~-~~v~~~~~-s~d~~-~las~~~-d~~i~iwd~ 88 (612)
..+...+.++.+.+.+..++.++ ++.+.+|+...+. ....+.++. ..+..+.+ ++++. +++..+. |+.+.+||.
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 35678999999999999999987 8999999999886 666676644 37888888 88888 5555444 999999999
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeC-CCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD-GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
.........+..|...|..++|+|+++.+++++. ++ .+.+|....+..+..+.+|...|.+++|+|+++.++++++
T Consensus 142 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG---TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred cCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCC---ceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9822266688999999999999999998888875 54 4566666677899999999999999999999985466669
Q ss_pred cCCeEEEEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe-eeeeeccCCccccEEEEEEec
Q 007229 168 EDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK-IGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~i~~~~ 245 (612)
.|+.|++||...+.... .+.+|.... ...|+|++.++++++.|+.+++|+...... ...+ ..|...+.++.|.|
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 294 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSP 294 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECC
Confidence 99999999999888877 688888875 448999998899999999999999987765 3333 37789999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
++..+++++.|+.+.+|+. .......... ...
T Consensus 295 ~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~--------------------------------------------~~~ 326 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDL----ETGKLLSSLT--------------------------------------------LKG 326 (466)
T ss_pred CCCEEEEeeCCCcEEEEEc----CCCceEEEee--------------------------------------------ecc
Confidence 8888888888988999987 4444433322 123
Q ss_pred cccceeEEEEEecCCcEEEEE-ecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCc
Q 007229 326 HVKNVSTLTALKISQQTILSS-SYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGD 404 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 404 (612)
|...+..+.+ ..+...++.+ ..|+.+.+|+..........
T Consensus 327 ~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------------------------------- 367 (466)
T COG2319 327 HEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL-------------------------------------- 367 (466)
T ss_pred cCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEe--------------------------------------
Confidence 4556677777 4322444444 67788888877655410000
Q ss_pred cceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE-EecCCeEEEEEccCcc
Q 007229 405 AEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV-GGQNGKLHIYSISGNT 483 (612)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~ 483 (612)
.....+..+.+++ ...... +..++.+.+|+.....
T Consensus 368 -------------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 403 (466)
T COG2319 368 -------------------------------------------EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS 403 (466)
T ss_pred -------------------------------------------cCCceEEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence 0001156677777 433333 6888999999998776
Q ss_pred cccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCC
Q 007229 484 LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 525 (612)
. ......+...+....+++++..++.++.++.+++|+..+
T Consensus 404 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 404 L--LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred e--eeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5 222322227899999999999999999999999999988
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-22 Score=179.34 Aligned_cols=274 Identities=15% Similarity=0.212 Sum_probs=201.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK 183 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 183 (612)
.|..++|-|||..|+.+..+. +.+++.+.|..+.++++|.+.|.+++|+.+|+ ++++|+.|+.|.+|+.+-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r----lliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR----LLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCCE----EEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCceeEEEeccccccee
Confidence 789999999999998888775 66778889999999999999999999999999 6999999999999986543322
Q ss_pred ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 184 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
+ -.|.+.|.||.|+|-...|++++- ...-+|..+... +... .....+.+.+|..||++++.|-.+|+|.+=+
T Consensus 89 k--YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~----kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 89 K--YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKH----KSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred e--eccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhh----hhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 2 258999999999999999998875 457789865433 3333 4556788999999999999999999998876
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec----C
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI----S 339 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~ 339 (612)
- .++..-.++ ...+.+.+|.+++|++. .
T Consensus 161 k-----~gEek~~I~-------------------------------------------Rpgg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 161 K-----NGEEKVKIE-------------------------------------------RPGGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred C-----CCCcceEEe-------------------------------------------CCCCCCCCceEEEecCCCCCCc
Confidence 4 333322222 12246678888888732 2
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCccee
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDL 417 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (612)
.+.++...+..++.++.+.....-.... ..-...|+.+ ++++++.|+.|+.+.++...
T Consensus 193 ~di~aV~DW~qTLSFy~LsG~~Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~------------------- 252 (1081)
T KOG1538|consen 193 NDILAVADWGQTLSFYQLSGKQIGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD------------------- 252 (1081)
T ss_pred cceEEEEeccceeEEEEecceeeccccc-CCCCchhheeccCCcEEEEccCCCceEEEeec-------------------
Confidence 3567777777777777766543322211 2333444544 66677777777666665421
Q ss_pred eecCCCCcEEEEEeeccEEEeecccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccC
Q 007229 418 SLALSSPELALVSTESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG 481 (612)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~ 481 (612)
+-.+.+.. ....|..++..|++++++.|+.||+|-.|++..
T Consensus 253 -----------------------GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 253 -----------------------GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -----------------------CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 12222221 456799999999999999999999999998753
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-21 Score=178.45 Aligned_cols=545 Identities=15% Similarity=0.124 Sum_probs=338.4
Q ss_pred eeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCC------------CEEE
Q 007229 8 ETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG------------EWIA 75 (612)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~------------~~la 75 (612)
.+.+++|. +..-.++.|+|.| +||||+++.|.+.|..+.+.++.++.|...|+.+.|.|-. -+||
T Consensus 7 ~tlpG~l~--~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA 83 (1062)
T KOG1912|consen 7 HTLPGPLS--RSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA 83 (1062)
T ss_pred ccCCCCCC--cccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEE
Confidence 45666664 4457899999988 8999999999999999999999999999999999998831 2688
Q ss_pred EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECC---CCC-EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEE
Q 007229 76 SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP---DGL-RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVL 151 (612)
Q Consensus 76 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~---~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~ 151 (612)
++...|.|.+||...+. ....+..|..++..++|-| +.+ .|++..... ++.+|+-++|+++...........
T Consensus 84 saD~~GrIil~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss---~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS---TLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred eccccCcEEEEEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCc---EEEEEEccCCceeeccccCCccee
Confidence 89999999999999887 4557888999999999976 443 444444433 577888889999999998888999
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCC-------CCeeeeccccccc-------------------------ceEEEEEC
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGP-------PFKFKLSHREHSN-------------------------FVNCIRFS 199 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~-------~~~~~~~~~~~~~-------------------------~v~~~~~s 199 (612)
|+.+.|-+...+..-+..|.+.+-+.- .++..+.-..|.+ ....++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 999999665456666666666665421 1222221112221 01235678
Q ss_pred CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC--CEEEEEeCCCcEEEEEeecCCCC-------
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG--KKVLTVSADKSAKVWEILEDGSG------- 270 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~------- 270 (612)
|.-+.++.......+.++|++-..++.....+ .+.+.-+.+.|++ ..|++.-.||.+.+|-.......
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l~vvpie---r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~ 316 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCLAVVPIE---RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNAS 316 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhceeEEEEec---cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchh
Confidence 87666666777889999999999998888533 3445556666654 56888999999999986321111
Q ss_pred -----CeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEEEEEcCCCCCCc------------------------
Q 007229 271 -----GRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSASNLDKAP------------------------ 320 (612)
Q Consensus 271 -----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~------------------------ 320 (612)
+.....+... +.....+..++.. ...+...-.+|...+|.+..+....
T Consensus 317 l~~dl~~Q~~~vr~m--~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k 394 (1062)
T KOG1912|consen 317 LSMDLGEQVHVVRPM--EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGK 394 (1062)
T ss_pred hccccccceEEEeec--hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhh
Confidence 1111111110 1111122222222 4445555566777777665321110
Q ss_pred ------eeecCcccceeEEEEE----------ecC-------CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 321 ------LSFSGHVKNVSTLTAL----------KIS-------QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 321 ------~~~~~~~~~v~~~~~~----------~~~-------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
..-.+|....++.... ++. -.+++.|+..|+|.++|+.++.....+..|...|.++.
T Consensus 395 ~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vkgle 474 (1062)
T KOG1912|consen 395 TSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLE 474 (1062)
T ss_pred ccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeee
Confidence 0001233333222211 111 13677899999999999999988888888999999999
Q ss_pred eec-cEEEEecCC----------CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccccee-
Q 007229 378 AVE-EVIFTAGFD----------NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMS- 445 (612)
Q Consensus 378 ~~~-~~l~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 445 (612)
+-+ ..+++.+.. +.+.+-|++++... ..+
T Consensus 475 W~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk---------------------------------------~fR~ 515 (1062)
T KOG1912|consen 475 WLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK---------------------------------------RFRG 515 (1062)
T ss_pred eccceeEEEeeeccccccccceeeeEEEEEccccccc---------------------------------------cccc
Confidence 944 345444332 24455555554422 111
Q ss_pred -eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee------------eccc-------------------
Q 007229 446 -KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV------------LEKH------------------- 493 (612)
Q Consensus 446 -~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~------------~~~~------------------- 493 (612)
..+...+|+.+..|..++||++...+.-+.+||+++..+..... +..|
T Consensus 516 l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~v 595 (1062)
T KOG1912|consen 516 LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLV 595 (1062)
T ss_pred CCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhcee
Confidence 11245679999999999999999999999999996543311000 0000
Q ss_pred -----cCceEE---------------------------EEEcCCCcEEEEEcCCCeEEEEecCCcceeeec-ccccccce
Q 007229 494 -----RGAITV---------------------------IQYSPDVSMFASADGNREAIVWDRVSKEVKLNN-MLFHTARI 540 (612)
Q Consensus 494 -----~~~i~~---------------------------~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i 540 (612)
...+.. |+| .+..|+.|+.+|.+.+||+...+..... ...|....
T Consensus 596 v~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~ 673 (1062)
T KOG1912|consen 596 VLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHS 673 (1062)
T ss_pred eeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhhh
Confidence 011111 122 2457899999999999998665443111 11122233
Q ss_pred eEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc--CeeeEEEecCceEEEccCCCeEEEEEe
Q 007229 541 NCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG--GVYGVAFMDDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 541 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~l~s~~~d~~i~~w~~ 609 (612)
.-..+-|....+++--.|+ +-+||.+. . ..+..+.+... .+..+.++....++.. .|+++|+-.+
T Consensus 674 l~~~~ipG~~~~lvl~~d~-~~lwdtk~-~-~lV~siag~dssfrlldvdlc~~~~~~l~-~d~~~Rf~~m 740 (1062)
T KOG1912|consen 674 LTFPQIPGDHTTLVLELDW-LPLWDTKA-D-TLVLSIAGMDSSFRLLDVDLCEKSPLVLP-NDNKERFRVM 740 (1062)
T ss_pred eecccCCCCceEEEEecCc-ceeccccc-c-eeeeeeccCCcceEEEEEEecccCceecC-CCCceeEEec
Confidence 3334445322333444455 88898877 4 45555544444 3444444422223322 2336665443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-20 Score=182.95 Aligned_cols=373 Identities=25% Similarity=0.419 Sum_probs=279.4
Q ss_pred EeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-CCeEEEEE-CCCCC-EEEEEeC-CCCeeeE
Q 007229 54 FYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-GRIDDLQW-SPDGL-RIVACGD-GKGKSFV 129 (612)
Q Consensus 54 ~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~-s~~~~-~l~~~~~-~~~~~~i 129 (612)
.+..|...+.++.+.+++..++.++.|+.+.+|+..........+..+. ..+..+.+ ++++. .++..+. ++ .+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG---TV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCc---cE
Confidence 4668999999999999999999999999999999998863333444433 37777777 88888 4444444 33 45
Q ss_pred EEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeec-CCeEEEEeCCCCeeeecccccccceEEEEECCCCC-eEE
Q 007229 130 RAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE-DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS-KLI 206 (612)
Q Consensus 130 ~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 206 (612)
.+|+... ......+..|...|..++|+|++. .++.++. |+.+++|+...+.....+.+|...|.+++|+|++. .++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 6666666 788899999999999999999999 4777775 99999999999888888889999999999999998 555
Q ss_pred EEEcCCcEEEEecCCCCeee-eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee-EeeeeccCccc
Q 007229 207 SVSSDRKGLIYDGKSGEKIG-EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV-IKTFASSTSNA 284 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~ 284 (612)
+++.|+.+++||...+.... .+ ..|.... ...|+|++.++++++.|+.+++|+. ..... ...
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~-------- 279 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTL---SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL----RSSSSLLRT-------- 279 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeec---CCCCcce-eEeECCCCCEEEEecCCCcEEEeee----cCCCcEEEE--------
Confidence 55899999999988777776 34 3666664 3389999988999999999999998 33222 111
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
..+|...+.++.+.+ .+..+++++.|+.+.+|+........
T Consensus 280 --------------------------------------~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 280 --------------------------------------LSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred --------------------------------------EecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 134667778887764 36677778888889999776654332
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
...
T Consensus 321 ~~~----------------------------------------------------------------------------- 323 (466)
T COG2319 321 SLT----------------------------------------------------------------------------- 323 (466)
T ss_pred Eee-----------------------------------------------------------------------------
Confidence 211
Q ss_pred eeecccceEEEEEEccCCCeEEEE-ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEE-EcCCCeEEEEe
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVG-GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS-ADGNREAIVWD 522 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~iwd 522 (612)
...+...+..+.+.+++..++.+ ..|+.+.+|+...... ........ .+..+.+++ ...... +..++.+.+|+
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 324 -LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP--LKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred -ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce--eEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 00111236667773333455555 6788899999987762 22222222 288899998 544444 68899999999
Q ss_pred cCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 523 RVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 523 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
............ +...+....+++++..+++++.++.+++|+...
T Consensus 399 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 399 LSTGSLLRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cccCeeeeeccC-CCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 999888644333 227899999999999999999999999999886
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-22 Score=173.77 Aligned_cols=230 Identities=14% Similarity=0.179 Sum_probs=171.0
Q ss_pred CCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceE-EEEECC-------CCCEEEEeeCcCeEEEee
Q 007229 16 TERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVT-VARYSP-------NGEWIASADVSGSVRIWG 87 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~-~~~~s~-------d~~~las~~~d~~i~iwd 87 (612)
.+...++|+.|+.....+.++.|..+.+|+-.+......+.-...-|. .+-.-+ ....++.++.||.+.|-+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 566788999999999988888898888886554333332222221111 111111 224688888999998876
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
-... +......|.+.+.+-.|+|||.-|+++|+|+ .|..|. +|-.-.++-....+|+|++|.|+.+.++.+.
T Consensus 92 k~~r--VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 92 KSAR--VERSISAHAAAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred ccch--hhhhhhhhhhhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 5544 5668889999999999999999999999998 455666 4444445666778999999999998755555
Q ss_pred ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC
Q 007229 167 GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
+ +.+.+=-+.....+...+.|.+-|.++.|++..+.+++|++|-..+|||. .|+.+..- ..|..+|++++|.|+
T Consensus 165 g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S---~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 165 G--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTS---AAEEYAITSVAFNPE 238 (737)
T ss_pred C--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccC---Chhccceeeeeeccc
Confidence 4 34555556666666678899999999999999999999999999999995 46666555 389999999999999
Q ss_pred CCEEEEEeCCCcEE
Q 007229 247 GKKVLTVSADKSAK 260 (612)
Q Consensus 247 ~~~l~~~~~dg~i~ 260 (612)
+.++.++.. +++
T Consensus 239 -~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 239 -KDYLLWSYN-TAR 250 (737)
T ss_pred -cceeeeeee-eee
Confidence 556666543 444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=173.94 Aligned_cols=283 Identities=17% Similarity=0.183 Sum_probs=206.5
Q ss_pred EEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecC----CCeEEEEECC-------CCCEEEEEeCCCCeee
Q 007229 63 TVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLS----GRIDDLQWSP-------DGLRIVACGDGKGKSF 128 (612)
Q Consensus 63 ~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~s~-------~~~~l~~~~~~~~~~~ 128 (612)
..+.+-|...+|+.+-.+ ..+.+|=....+. ..+..|. ....|++|.. -|+++|.|..+. .
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~--nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp---~ 203 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE--NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDP---E 203 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc--ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCc---e
Confidence 355667766677766422 3344444443331 1222232 2335666643 367999998888 5
Q ss_pred EEEEEecCCc---eeee------------------eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc
Q 007229 129 VRAFMWDSGT---TVGD------------------FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR 187 (612)
Q Consensus 129 i~i~~~~~~~---~~~~------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 187 (612)
|.||+.+-.. +... -.+|++.|.+++|+..-+.+||+|+.|.+|++||+.++++..++.
T Consensus 204 IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~ 283 (463)
T KOG0270|consen 204 IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT 283 (463)
T ss_pred eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence 7888877211 1111 236999999999999888899999999999999999999999999
Q ss_pred ccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCee-eeeeccCCccccEEEEEEecCC-CEEEEEeCCCcEEEEEe
Q 007229 188 EHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKI-GEFSSEDGHHGSIYAVSWSPDG-KKVLTVSADKSAKVWEI 264 (612)
Q Consensus 188 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~ 264 (612)
.|...|.+++|+|. ..+|++|+.|+++.+.|.+..... ..+ ...+.|..++|.|.. ..++++..||+++-+|+
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeec
Confidence 99999999999995 568999999999999999853222 222 456789999999854 45667778899999988
Q ss_pred ecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 265 LEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
+...+++..+..|..+|.++.++.....+++
T Consensus 360 -------------------------------------------------R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 360 -------------------------------------------------RNPGKPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred -------------------------------------------------CCCCCceeEEEeccCCcceEEecCCCCccee
Confidence 4445566777889999999999966689999
Q ss_pred EEecCCcEEEEEcCCceeeeecee--cccceEEEEe---eccEEEEecCCCeEEEEecCCCCCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKK--YDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
+++.|+.+++|++........... .-+...|.++ ....++.++..+.+++||+.+....
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999999999999876655333221 2234556666 3457888888889999999877643
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=175.23 Aligned_cols=163 Identities=19% Similarity=0.350 Sum_probs=136.6
Q ss_pred ccceEEEEEEccC-CCeEEEEecCCeEEEEEccCcccc-cceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCC
Q 007229 449 LGFTVTACAIAPD-GSEAIVGGQNGKLHIYSISGNTLT-EEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 449 ~~~~i~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~ 525 (612)
|+..-..++|||- ...|++|.--+.|++|...++... -...+.+|+..|-.|+||| ....+|+++.||+|+|||++.
T Consensus 210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 5556788999992 234788888889999999887652 2345677999999999999 456899999999999999998
Q ss_pred cce-eeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC--CCcceeeeecccccCeeeEEEe--cCceEEEccC
Q 007229 526 KEV-KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK--PASSRITIKNAHLGGVYGVAFM--DDFNVVSSGE 600 (612)
Q Consensus 526 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~~~ 600 (612)
+.. .......|.+.|+.|.|+.+-.+||+|++||+++|||++. .+ +.+..++.|..+|++|.|+ +...|+++|.
T Consensus 290 ~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 290 GPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred CCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 832 1123477999999999999888999999999999999986 34 6788999999999999999 6777999999
Q ss_pred CCeEEEEEeccC
Q 007229 601 DACIRVWRLATE 612 (612)
Q Consensus 601 d~~i~~w~~~~~ 612 (612)
|.+|.+||+..|
T Consensus 369 D~QitiWDlsvE 380 (440)
T KOG0302|consen 369 DNQITIWDLSVE 380 (440)
T ss_pred CCcEEEEEeecc
Confidence 999999999754
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=171.96 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=159.5
Q ss_pred eccCCCceEEEEECCCC--CEEEEeeCcCeEEEeecCCCc---------------eeeeeeeecCCCeEEEEECCCCC-E
Q 007229 55 YGEHGYPVTVARYSPNG--EWIASADVSGSVRIWGTHNGF---------------VLKNEFKVLSGRIDDLQWSPDGL-R 116 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~--~~las~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~i~~~~~s~~~~-~ 116 (612)
..+|.+.++.+.-++-| .+.|+=+..|.|.|||+...- .....+.+|.+.=+.++|||--. .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 44688888888888855 566677899999999975321 13346778998999999999322 3
Q ss_pred EEEEeCCCCeeeEEEEEecCCc---eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC---eeeecccccc
Q 007229 117 IVACGDGKGKSFVRAFMWDSGT---TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF---KFKLSHREHS 190 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~ 190 (612)
|+++.... .|.+|...++. -...|.+|+..|..++|||....++++|+-||+|+|||++.+ .++. .+.|.
T Consensus 227 LlsGDc~~---~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~ 302 (440)
T KOG0302|consen 227 LLSGDCVK---GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHN 302 (440)
T ss_pred cccCcccc---ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccC
Confidence 55444333 23444433433 223467899999999999998889999999999999999988 3333 37899
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCC---CCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEee
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS---GEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~ 265 (612)
..|+.+.|+.+..+||+|+.||+++|||++. ++++..+ +.|..+|+++.|+| +...|++++.|.+|.+||+.
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f---k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF---KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE---EeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999999888999999999999999976 4455566 58999999999999 45678888899999999994
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-24 Score=197.72 Aligned_cols=223 Identities=17% Similarity=0.297 Sum_probs=200.7
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEE
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 117 (612)
...+++||... +..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++...|
T Consensus 13 ~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 13 ATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-SLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred eeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-eeeccCCcceeeecCcchhhh
Confidence 34555666443 55789999999997888999999999999999998776444 589999999999999999999
Q ss_pred EEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEE
Q 007229 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIR 197 (612)
Q Consensus 118 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 197 (612)
++++.++ .|++|++..++.++++.+|...+.++.|+|-+.| .+.|+.|+.+++||.+...+.+.+.+|...+..+.
T Consensus 86 aagsasg---tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 86 AAGSASG---TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred cccccCC---ceeeeehhhhhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 9999888 6889999999999999999999999999999996 79999999999999999999999999999999999
Q ss_pred ECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeee
Q 007229 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277 (612)
Q Consensus 198 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 277 (612)
|+|+|++++.+++|.+++|||+..|+...+| ..|.+.+.++.|+|..-+++.|+.|+++++||+ ++.+.+...
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef---~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl----etfe~I~s~ 234 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEF---KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL----ETFEVISSG 234 (825)
T ss_pred ecCCCceeeccCCcceeeeeccccccccccc---ccccccccccccCchhhhhccCCCCceeeeecc----ceeEEeecc
Confidence 9999999999999999999999999999999 479999999999999999999999999999999 766666544
Q ss_pred e
Q 007229 278 A 278 (612)
Q Consensus 278 ~ 278 (612)
.
T Consensus 235 ~ 235 (825)
T KOG0267|consen 235 K 235 (825)
T ss_pred C
Confidence 3
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-22 Score=167.14 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=136.0
Q ss_pred CCceeEEEEccCCC-EEEEec-CCEEEEEeCCCCc---------eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEe
Q 007229 18 RGRGILISGNPKTD-TILYCN-GRSVLIRYLDKPL---------HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIW 86 (612)
Q Consensus 18 ~~~v~~~~~s~d~~-~l~~~~-~~~i~i~~~~~~~---------~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iw 86 (612)
...+..+.|.+... .||+++ |..|+||-++.++ .+..|..|...|+++.|+|+|.+||+|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35788999999887 999988 8999999876432 234578899999999999999999999999999999
Q ss_pred ecC--------C-----Cc--eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEE
Q 007229 87 GTH--------N-----GF--VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVL 151 (612)
Q Consensus 87 d~~--------~-----~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~ 151 (612)
... + .+ .....+.+|...|..++|+||+.++++++-++ .+++|+...|.....+..|...|.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn---s~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN---SVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc---eEEEEEeccceeEeeccccccccc
Confidence 876 2 11 15567788999999999999999999999888 467888889999999999999999
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCCCCee
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 182 (612)
.++|.|-++| +++-+.|...+.+.+...+.
T Consensus 170 gvawDpl~qy-v~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 170 GVAWDPLNQY-VASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred eeecchhhhh-hhhhccCcccceeeeeeeee
Confidence 9999999996 99988888666666554443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=159.65 Aligned_cols=281 Identities=17% Similarity=0.289 Sum_probs=201.6
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe------------eeeeeccCCccccEEEEEEe-------cCCCEEE
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK------------IGEFSSEDGHHGSIYAVSWS-------PDGKKVL 251 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~v~~i~~~-------~~~~~l~ 251 (612)
.-...+.|+|||..|++-+.|..+.+|++...-. ...+ .-.....|...+|- |+..+++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~--r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSY--RYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeE--EeccCCEEEEEEeeeccccCCCccceee
Confidence 3355678999999999999999999999753110 0011 01334567777775 5678899
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc---
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--- 328 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--- 328 (612)
+.+.+.-|++||. -+++....+.... |..
T Consensus 128 ~ssr~~PIh~wda----ftG~lraSy~~yd--------------------------------------------h~de~t 159 (406)
T KOG2919|consen 128 VSSRDQPIHLWDA----FTGKLRASYRAYD--------------------------------------------HQDEYT 159 (406)
T ss_pred eccccCceeeeec----cccccccchhhhh--------------------------------------------hHHhhh
Confidence 9999999999999 7777776665432 222
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEc-CCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccce
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIR-GVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEH 407 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 407 (612)
...+++|++ ++..|++|. ...|+++|+ +.+........
T Consensus 160 aAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t--------------------------------------- 198 (406)
T KOG2919|consen 160 AAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT--------------------------------------- 198 (406)
T ss_pred hheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhh---------------------------------------
Confidence 234566773 266666554 578888887 33322111100
Q ss_pred eccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCccccc
Q 007229 408 IDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTE 486 (612)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~ 486 (612)
....++...+-+.+++|+| +.+.+++|+....+-||.-..+.+
T Consensus 199 ----------------------------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-- 242 (406)
T KOG2919|consen 199 ----------------------------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-- 242 (406)
T ss_pred ----------------------------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc--
Confidence 0000111234688999999 556999999999999998887776
Q ss_pred ceeeccccCceEEEEEcCCCcEEEEEcC-CCeEEEEecCCcceeeeccccccc-ceeEEEe--cCCCcEEEEeecCcEEE
Q 007229 487 EMVLEKHRGAITVIQYSPDVSMFASADG-NREAIVWDRVSKEVKLNNMLFHTA-RINCLAW--SPSSTMVATGSIDTCVI 562 (612)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~--s~~~~~l~s~~~d~~i~ 562 (612)
...+.+|.+.|+.++|.++|+.|.+|.. |-.|..||++......-.+..|.. .=..|.| .|++++||+|+.||.|+
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 6788899999999999999999999875 678999999887665455666665 3334444 58999999999999999
Q ss_pred EEEccCCCcceeeeecccccCeeeEEEecCc-eEEEcc
Q 007229 563 IYEIGKPASSRITIKNAHLGGVYGVAFMDDF-NVVSSG 599 (612)
Q Consensus 563 iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~ 599 (612)
+||++..+ .....+..|+..+..+++.|-- .+++++
T Consensus 323 vwdlk~~g-n~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 323 VWDLKDLG-NEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred EEecCCCC-CcccccccccccccceecCcccceeeecc
Confidence 99999977 7788888899999999988443 344443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=160.05 Aligned_cols=235 Identities=20% Similarity=0.263 Sum_probs=178.6
Q ss_pred eEEEEccCCCEEEEec-CCEEEEEeCCCC-------ceee-----Eec-cCCCceEEEEEC-------CCCCEEEEeeCc
Q 007229 22 ILISGNPKTDTILYCN-GRSVLIRYLDKP-------LHVE-----FYG-EHGYPVTVARYS-------PNGEWIASADVS 80 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~-~~~i~i~~~~~~-------~~~~-----~~~-~h~~~v~~~~~s-------~d~~~las~~~d 80 (612)
..+-|||||..|++.+ ++.+.+|++... .... .++ .....|...+|- |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 4678999999999988 899999998521 1110 111 123456666665 567899999999
Q ss_pred CeEEEeecCCCceeeeeeee--cCC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCcee--ee-----eccCC
Q 007229 81 GSVRIWGTHNGFVLKNEFKV--LSG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTV--GD-----FDGHS 147 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~--~~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~--~~-----~~~~~ 147 (612)
.-|++||.-+++ ++..+.. |.. .-.+++|+|||.+|.++-... |++++.. .|+.- .. -.+..
T Consensus 133 ~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrc----irvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 133 QPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC----IRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred Cceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeecccce----EEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999998 5555543 333 346899999999999876653 6666663 34321 11 12346
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCC-Cee
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSG-EKI 225 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~-~~~ 225 (612)
+-+.+++|+|....+++.|+....+-||.-..++++..+.+|.+.|+.+.|.++|+.|++|.. |-.|..||++.- .++
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 788999999988778999999999999999999999999999999999999999999999887 778999999864 444
Q ss_pred eeeeccCCccc---cEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 226 GEFSSEDGHHG---SIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 226 ~~~~~~~~~~~---~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
..+. .|.. .-.-....|++++|++|+.||.|++||+
T Consensus 288 ~~L~---rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 288 YALE---RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred hhhh---hhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 4552 3333 2223445678999999999999999999
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=170.46 Aligned_cols=231 Identities=14% Similarity=0.150 Sum_probs=178.0
Q ss_pred CCCEEEEec-CCEEEEEeCCCC---ceeeE------------------eccCCCceEEEEECCCC-CEEEEeeCcCeEEE
Q 007229 29 KTDTILYCN-GRSVLIRYLDKP---LHVEF------------------YGEHGYPVTVARYSPNG-EWIASADVSGSVRI 85 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~~~~---~~~~~------------------~~~h~~~v~~~~~s~d~-~~las~~~d~~i~i 85 (612)
.|+++|.|. +..|.|||+.=- .+... -.+|+..|.+++|..+- ..||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 578999999 899999998611 11111 23699999999998854 68999999999999
Q ss_pred eecCCCceeeeeeeecCCCeEEEEECCC-CCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEE
Q 007229 86 WGTHNGFVLKNEFKVLSGRIDDLQWSPD-GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 86 wd~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 164 (612)
||+.+++ ....+..|.+.|.++.|.|. ...|++++.++ ++.+.+..........-...+.|..++|.|.....++
T Consensus 271 WD~~~g~-p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~---~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDTGK-PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDG---TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCCCC-cceehhhcCCceeEEEecCCCceEEEeccccc---eEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 9999999 56688899999999999995 57888888888 4566665532222222234567899999999988899
Q ss_pred EeecCCeEEEEeCCCC-eeeecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 165 TCGEDFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
++..||+++-+|++.. +++.+++.|.++|.++++++.- .+|++++.|+.+++|++............ -.-+...|.+
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~-~~~~rl~c~~ 425 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS-FKLGRLHCFA 425 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc-ccccceeecc
Confidence 9999999999999875 8899999999999999999854 47889999999999998765543332100 1123366777
Q ss_pred EecCCC-EEEEEeCCCcEEEEEe
Q 007229 243 WSPDGK-KVLTVSADKSAKVWEI 264 (612)
Q Consensus 243 ~~~~~~-~l~~~~~dg~i~iw~~ 264 (612)
+.|+-. +++.|+..+.+++||+
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cCCCcceEEEecCccceEEEeec
Confidence 777544 5677777888999998
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=158.79 Aligned_cols=312 Identities=15% Similarity=0.128 Sum_probs=207.0
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+...++.|...|+++.|..+++ |.+|...|.|++|++.+.+....++ .+...|+.+.--|++ .|.+-+.|+.+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEE
Confidence 4566778999999999999885 9999999999999999999888888 677889999999985 58888999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
++..+..+.. |.-.+.++-|.+.. +...+. ...|-+..+.+.....+.....
T Consensus 83 ~ia~s~~i~i------~Si~~nslgFCrfS--l~~~~k---~~eqll~yp~rgsde~h~~D~g----------------- 134 (323)
T KOG0322|consen 83 TIAYSAFISI------HSIVVNSLGFCRFS--LVKKPK---NSEQLLEYPSRGSDETHKQDGG----------------- 134 (323)
T ss_pred EccCcceEEE------eeeeccccccccce--eccCCC---cchhheecCCcccchhhhhccC-----------------
Confidence 9987554433 23445555555422 221111 1111110000111111000000
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE--ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL--KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
..-.+.+-+ ..-.+..+.+.+..+. ....-++++|.++|.+.+||+.++.....++.
T Consensus 135 ------~~tqv~i~d--------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~------- 193 (323)
T KOG0322|consen 135 ------DTTQVQIAD--------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ------- 193 (323)
T ss_pred ------ccceeEccC--------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-------
Confidence 000111111 1112233444444433 21134566788899999999887633222110
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
.|. .......|..++.+
T Consensus 194 ------------------~~k---------------------------------------------v~~~~ash~qpvls 210 (323)
T KOG0322|consen 194 ------------------SSK---------------------------------------------VESPNASHKQPVLS 210 (323)
T ss_pred ------------------ccc---------------------------------------------cccchhhccCccee
Confidence 000 01111225567888
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCc--ccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGN--TLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
+.+.+.-..=++|+.+..+..|+++.. .+.......-.+-.|..+..-||++.+|+++.|+.||||+.++...+ ..+
T Consensus 211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL-AVL 289 (323)
T KOG0322|consen 211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL-AVL 289 (323)
T ss_pred eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch-hhh
Confidence 888876666677888888889988643 33222233333445888999999999999999999999999999997 678
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
..|...|++++|+||...+|+++.|++|.+|++
T Consensus 290 kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 889999999999999999999999999999986
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-22 Score=156.80 Aligned_cols=288 Identities=17% Similarity=0.196 Sum_probs=201.5
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-ecccceEEEEe-eccEEEEecCCCeEEEE
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-KYDARIKCLAA-VEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~-~~~~l~~~~~~~~i~~~ 395 (612)
.+...+++|...++++.|-. +.+|.+|..-|.+.+|++++........ .+...|..+.. .++.+.+-+.|..+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa--~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQA--NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhcc--chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEE
Confidence 34566778999999999986 6779999999999999999988877666 47788888888 66999999999999999
Q ss_pred ecCCCCCCccceeccCCCcc-eeeecCCC--CcEEEEEeecc---EEEeecccceeee-------cccceEEEEEEcc-C
Q 007229 396 PLCEGECGDAEHIDVGSQPL-DLSLALSS--PELALVSTESG---VILLDSLKVMSKI-------DLGFTVTACAIAP-D 461 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~i~~~~~s~-~ 461 (612)
++..........+....--. ..++.+.. .........++ ..+.+.+...+.. ...+.+.|..+.. +
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 99875544333222111110 01111111 11111111111 1112211111111 1123455554322 2
Q ss_pred CC--eEEEEecCCeEEEEEccCcccc--------cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc--cee
Q 007229 462 GS--EAIVGGQNGKLHIYSISGNTLT--------EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK--EVK 529 (612)
Q Consensus 462 ~~--~l~~~~~dg~v~i~d~~~~~~~--------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~ 529 (612)
+. ++++|.++|.+.+||+.++... .......|.++|.++.|.+.-..=++++.+..+..|++... .+.
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 32 4678889999999999986321 12334579999999999987667778888888999988654 221
Q ss_pred e-ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEE
Q 007229 530 L-NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVW 607 (612)
Q Consensus 530 ~-~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w 607 (612)
. ....-..-.|..+..-||++.+|+++.|++||||+.++ . +.+.+++.|++.|.+++|+ +...+++++.|+.|.+|
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-L-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc-C-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence 1 11111234588899999999999999999999999999 6 8899999999999999999 66899999999999999
Q ss_pred Ee
Q 007229 608 RL 609 (612)
Q Consensus 608 ~~ 609 (612)
++
T Consensus 321 kL 322 (323)
T KOG0322|consen 321 KL 322 (323)
T ss_pred ec
Confidence 86
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=157.34 Aligned_cols=374 Identities=11% Similarity=0.119 Sum_probs=231.9
Q ss_pred EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc
Q 007229 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 186 (612)
-.+|||+|+++|++...+ +.|.+-++-+..+.+. --+.|.-+.|..|..+++.....|+.|.+|++...+....+
T Consensus 13 ~c~fSp~g~yiAs~~~yr----lviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYR----LVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeeeE----EEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 468999999999998764 3444444444333332 24667788999999988888899999999999999888888
Q ss_pred cccccceEEEEECCCCCeEE-EEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLI-SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
.....++.++.|||||+.++ +...+-.|.+|.+.+.+....- -....+..++|+|||++.+..+.-.....+++.
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec----ccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 88889999999999997655 4555889999999887765544 334556899999999998887754221111110
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
. -..-..+ ..+.-.+-..+.+.|++. +..
T Consensus 164 ~-c~~W~ll----------------------------------------------~~f~~dT~DltgieWsPd-g~~--- 192 (447)
T KOG4497|consen 164 S-CKAWILL----------------------------------------------KEFKLDTIDLTGIEWSPD-GNW--- 192 (447)
T ss_pred h-hHHHHHH----------------------------------------------HhcCCCcccccCceECCC-CcE---
Confidence 0 0111111 122223334556667741 333
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
+.+||.--...+.... ..-.+..+++ .++.++.|+.|+.+|+.+--+-+
T Consensus 193 ------laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk---------------------- 243 (447)
T KOG4497|consen 193 ------LAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK---------------------- 243 (447)
T ss_pred ------EEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeee----------------------
Confidence 4455432221111110 2233444444 35666777777766665432111
Q ss_pred CcEEEEEeeccEEEeecccceeeecccce--------------------EEEEEEccCCCeEEEEecCCeEEEEEccCc-
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFT--------------------VTACAIAPDGSEAIVGGQNGKLHIYSISGN- 482 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~- 482 (612)
...++-|... ..++.|.|.. -...+|.....
T Consensus 244 -------------------~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~---------~~a~~~~~se~~ 295 (447)
T KOG4497|consen 244 -------------------PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD---------LEAHIWEESETI 295 (447)
T ss_pred -------------------ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc---------cccCccccchhh
Confidence 1111111110 1223333221 11111211100
Q ss_pred -----------ccccceeeccccCceEEEEEcCCCcEEEEEcCC--CeEEEEecCCcceeeecccccccceeEEEecCCC
Q 007229 483 -----------TLTEEMVLEKHRGAITVIQYSPDVSMFASADGN--REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS 549 (612)
Q Consensus 483 -----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 549 (612)
++.+...+......+.-++||+|..++++-... +.+-+||++..+.. ..+. ...+|.+..|.|..
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~-avLi-Qk~piraf~WdP~~ 373 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH-AVLI-QKHPIRAFEWDPGR 373 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh-hhhh-hccceeEEEeCCCC
Confidence 001112222334557889999999999987543 67899999988764 3333 56789999999999
Q ss_pred cEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCC
Q 007229 550 TMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDA 602 (612)
Q Consensus 550 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~ 602 (612)
..|+.+.....+++|.... . ..+.. ....-.|..+.|. ++..++..+.|.
T Consensus 374 prL~vctg~srLY~W~psg-~-~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSG-P-RVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred ceEEEEcCCceEEEEcCCC-c-eEEec-CCCCceeeeEEecCCCcEEEEEcCCc
Confidence 9998888888899999876 2 33332 2233579999999 999999998885
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=157.58 Aligned_cols=281 Identities=14% Similarity=0.169 Sum_probs=192.2
Q ss_pred EEEEe-cCCEEEEEeCCCCceeeEeccCCCceEEEEECC--CCCEEEEeeCcCeEEEeecCCCceeee-eeeecC-CCeE
Q 007229 32 TILYC-NGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSP--NGEWIASADVSGSVRIWGTHNGFVLKN-EFKVLS-GRID 106 (612)
Q Consensus 32 ~l~~~-~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-~~i~ 106 (612)
.+|++ +.|.|++||..+++.+..+++|...++.++|.. ....+.+++.||+|++||+.......+ ....++ .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 35555 489999999999999999999999999999988 467899999999999999998765333 334444 3566
Q ss_pred EEEECCCCCEEEEEeCCC-CeeeEEEEEecCCce-eeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee-
Q 007229 107 DLQWSPDGLRIVACGDGK-GKSFVRAFMWDSGTT-VGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF- 182 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~- 182 (612)
+++..-.++.++.+.... ....+.+|+|...+. ++.+ ..|.+.|+++.|+|..+.+|++|+.||.|.+||++.-..
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 777666777777665422 122456666665544 5554 679999999999999999999999999999999876432
Q ss_pred --eecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCC---------ccccEEEEEEecCCCEE
Q 007229 183 --KLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDG---------HHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 183 --~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~l 250 (612)
+...-.|...|.++.|..++ +.+.+-+...+..+|+++.+.+...+..+.- ....+...-...+...+
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 22233577789999999877 4588888899999999999886665532110 00111111111133344
Q ss_pred EEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC-ccc
Q 007229 251 LTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG-HVK 328 (612)
Q Consensus 251 ~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~ 328 (612)
+.++. -+...++-+. .... .........+.+ |..
T Consensus 282 ~l~g~~~n~~~~~~~~----~~~s----------------------------------------~~~~~~~a~l~g~~~e 317 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLV----DTSS----------------------------------------GSLLTEPAILQGGHEE 317 (376)
T ss_pred EEeccccCceeEEEee----eccc----------------------------------------ccccCccccccCCcHH
Confidence 44433 3444444431 0000 111222334444 666
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
-|.++.|. ..+.++++|++||.+.+|..
T Consensus 318 iVR~i~~~-~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 318 IVRDILFD-VKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHHHhhh-cccceeeccCCCceEEEEec
Confidence 67777666 22789999999999999975
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=191.59 Aligned_cols=289 Identities=16% Similarity=0.229 Sum_probs=212.4
Q ss_pred EEEEEcCCCCEEEEEe----------ecCCeEEEEeCCC--Ce----eeecccccccceEEEEECCCCCe----EEEEEc
Q 007229 151 LSCEFKPTRPFRIATC----------GEDFLVNFYEGPP--FK----FKLSHREHSNFVNCIRFSPDGSK----LISVSS 210 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~----------~~d~~i~~wd~~~--~~----~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~ 210 (612)
..++|+|++..++++| +.+.++.+|.+.. .. ....+ .-....+.++|.+.+.. |+.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence 3568888887446655 3345566664332 22 22222 23456889999997765 888999
Q ss_pred CCcEEEEecCC---CCeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 211 DRKGLIYDGKS---GEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 211 dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
||.|.+||... +.....+.....|.+.|..+.|++... +|++|+.||.|.|||+ ...+.-....
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl----nn~~tP~~~~-------- 156 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL----NKPETPFTPG-------- 156 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc----CCcCCCCCCC--------
Confidence 99999999876 444444444568999999999999654 9999999999999999 2211111100
Q ss_pred eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 287 DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
-......|.+++|.......|++++.+|...+||++..+.+...
T Consensus 157 ------------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 157 ------------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred ------------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc
Confidence 12245678899999555889999999999999999877543332
Q ss_pred eecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceee
Q 007229 367 KKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSK 446 (612)
Q Consensus 367 ~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (612)
..+..
T Consensus 201 s~~~~--------------------------------------------------------------------------- 205 (1049)
T KOG0307|consen 201 SDTPG--------------------------------------------------------------------------- 205 (1049)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 21111
Q ss_pred ecccceEEEEEEccCC-CeEEEEecCC---eEEEEEccCcccccceeeccccCceEEEEEcCCC-cEEEEEcCCCeEEEE
Q 007229 447 IDLGFTVTACAIAPDG-SEAIVGGQNG---KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDV-SMFASADGNREAIVW 521 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~-~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iw 521 (612)
...+..++|+|+. ..+++++.|. .|.+||++.-. .+.+.+++|...|.++.|++.+ ++|++++.|+.|.+|
T Consensus 206 ---~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~w 281 (1049)
T KOG0307|consen 206 ---RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICW 281 (1049)
T ss_pred ---ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEe
Confidence 1236778999976 3455555443 79999998654 3467789999999999999955 899999999999999
Q ss_pred ecCCcceeeecccccccceeEEEecCCCc-EEEEeecCcEEEEEEccC
Q 007229 522 DRVSKEVKLNNMLFHTARINCLAWSPSST-MVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 522 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~d~~i~iwd~~~ 568 (612)
+.++++.+.. +......+..+.|+|... .++.++-||.|.||.+..
T Consensus 282 N~~tgEvl~~-~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 282 NPNTGEVLGE-LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCceEeee-cCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999999844 554778899999999766 788999999999999987
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=143.02 Aligned_cols=235 Identities=12% Similarity=0.183 Sum_probs=181.9
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCC---------ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNG---------FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
.|.+-+++|.+++|+.|..+|+|.+..+.+. +.......+|.++++.++|. ..+|++++++ .++-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG----~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDG----LVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCc----eEEE
Confidence 4666789999999999999999999988632 22334557899999999998 5578888874 4788
Q ss_pred EEecCCce------eee--eccCC-----ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEE
Q 007229 132 FMWDSGTT------VGD--FDGHS-----RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRF 198 (612)
Q Consensus 132 ~~~~~~~~------~~~--~~~~~-----~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 198 (612)
|.|+.... +.. .+.|. -.|.++-..|..+. ++.++.|+.++-||+++|+...++++|++.|.++.-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 88884322 111 12222 35789999998885 677779999999999999999999999999999998
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC------Cc-cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED------GH-HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG 271 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~-~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 271 (612)
-.....+++|++||++++||+++++.+..+...+ .| ...|-+++- +..++++|+ ...+.+|.+ ...
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhL----rss 237 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHL----RSS 237 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEec----cCC
Confidence 5555579999999999999999999988874321 11 223445544 566787765 457999999 888
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
++...|..+. .+..+.|.++.+++++..+.+.-|.+..
T Consensus 238 e~t~vfpipa------~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 238 ESTCVFPIPA------RVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred CceEEEeccc------ceeEeeeecceEEEeccccceeeeeecc
Confidence 8888887654 6667788899999999999998887553
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=151.11 Aligned_cols=244 Identities=20% Similarity=0.342 Sum_probs=182.7
Q ss_pred CCCCceeEEEEccCCCE-EEEecC--------CEEEEEeCCCCc---------eeeEec-cCCCceEEEEECCCCCEEEE
Q 007229 16 TERGRGILISGNPKTDT-ILYCNG--------RSVLIRYLDKPL---------HVEFYG-EHGYPVTVARYSPNGEWIAS 76 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~-l~~~~~--------~~i~i~~~~~~~---------~~~~~~-~h~~~v~~~~~s~d~~~las 76 (612)
-+.|.|..++-+|-.+. |+++.. ....||.+.... ++..|. .+-+.|.|+.|.|++..||+
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 35678888999995554 444432 267799987432 223333 56679999999999999998
Q ss_pred eeCcCeEEEeecCCCceeeeeee-----ecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEecCCceeeee-ccCCc
Q 007229 77 ADVSGSVRIWGTHNGFVLKNEFK-----VLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-DGHSR 148 (612)
Q Consensus 77 ~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~ 148 (612)
-. |..|.+|++..+..+...+. .+....++-+|+| ||..+++.++.. ++.|+..+.++...+ ..|..
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t----l~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST----LQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc----EEEEEccchhhhcchhhhhcc
Confidence 85 78999999998765332222 3455788889999 788888888775 344444455555554 57999
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCC---
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGE--- 223 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~--- 223 (612)
.|..+.|+|+.++.|++|+.||.|++||.+. ..+++.+.+|...|.++.|+|. .+++++++.|..|.+|....-.
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 9999999999999999999999999999875 4567789999999999999995 5678899999999999754211
Q ss_pred ------------------e---ee--eeeccCCccccEEEEEEecCC-CEEEEEeCCCcEEEEEe
Q 007229 224 ------------------K---IG--EFSSEDGHHGSIYAVSWSPDG-KKVLTVSADKSAKVWEI 264 (612)
Q Consensus 224 ------------------~---~~--~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~ 264 (612)
. +. .+.....|...|++++|+.-. =.+++-+.||.+.|=.+
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0 00 011224688999999999844 45778899999988765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-22 Score=188.72 Aligned_cols=286 Identities=19% Similarity=0.244 Sum_probs=216.5
Q ss_pred EEEECCCCC-EEEEee----------CcCeEEEeecC--CCce-eee-eeeecCCCeEEEEECCCCCE----EEEEeCCC
Q 007229 64 VARYSPNGE-WIASAD----------VSGSVRIWGTH--NGFV-LKN-EFKVLSGRIDDLQWSPDGLR----IVACGDGK 124 (612)
Q Consensus 64 ~~~~s~d~~-~las~~----------~d~~i~iwd~~--~~~~-~~~-~~~~~~~~i~~~~~s~~~~~----l~~~~~~~ 124 (612)
.++|||++. +||+|. .+.++.||.+. +.+. ++. --..-....+.++|.+.|.. |+.+.+++
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 578999887 666542 34556666554 2221 111 11123457889999998877 55555555
Q ss_pred CeeeEEEEEecC------CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc--ccccceEEE
Q 007229 125 GKSFVRAFMWDS------GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR--EHSNFVNCI 196 (612)
Q Consensus 125 ~~~~i~i~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~ 196 (612)
.|.+|+-+. ...+.+...|.+.|..+.|++....+||+|+.||.|.|||+...+.-.+.. ...+.|.++
T Consensus 91 ---~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 91 ---NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred ---ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 245554442 234667789999999999999988889999999999999998866555542 245789999
Q ss_pred EECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC-CEEEEEeCCC---cEEEEEeecCCCCC
Q 007229 197 RFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG-KKVLTVSADK---SAKVWEILEDGSGG 271 (612)
Q Consensus 197 ~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg---~i~iw~~~~~~~~~ 271 (612)
+|+.. ...|++++.+|.+.|||++..+.+..+... .....+..++|+|+. ..+++++.|. .|.+||+
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl------- 239 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL------- 239 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeeeeCCCCceeeeeecCCCCCceeEeecc-------
Confidence 99974 456788888999999999999888777422 222457899999965 4566666653 4667776
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 351 (612)
+....+.+.+.+|...|.++.|+..+..++++++.|+.
T Consensus 240 ------------------------------------------R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 240 ------------------------------------------RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred ------------------------------------------cccCCchhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 55566677888999999999999766899999999999
Q ss_pred EEEEEcCCceeeeeceecccceEEEEe---eccEEEEecCCCeEEEEecCCCCC
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGEC 402 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~ 402 (612)
|.+|+.++++.+.......+.+..+.| +...++.++.||.|.++.+.....
T Consensus 278 ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 999999999998888777888888888 667899999999999999887653
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=155.97 Aligned_cols=277 Identities=15% Similarity=0.215 Sum_probs=191.0
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC-CCEEEEEeecCCeEEEEeCCCCeeeecc--cccc-c
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT-RPFRIATCGEDFLVNFYEGPPFKFKLSH--REHS-N 191 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~-~ 191 (612)
.+|++-..+ .+++++|.+++.+..++++...+..++|... ++..+.+|+.||+|++||++.......+ ..++ .
T Consensus 42 ~vav~lSng---sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 42 AVAVSLSNG---SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eEEEEecCC---eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 455554555 5899999999999999999999999999874 5557999999999999999987765553 3444 5
Q ss_pred ceEEEEECCCCCeEEEEEc----CCcEEEEecCCCCe-eeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEee
Q 007229 192 FVNCIRFSPDGSKLISVSS----DRKGLIYDGKSGEK-IGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~ 265 (612)
+..+++..-.++.+++|+. +-.+.+||++..+. +..+ .+.|...|++++|+| +.+.|++|+.||.+.+||+.
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~--~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL--NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh--hhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 6778887777888887754 66799999998877 6666 458999999999999 67899999999999999994
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
.+.+...++. .-.|...|..+.|..+.-+.+.+
T Consensus 197 ~d~EeDaL~~-----------------------------------------------viN~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 197 KDNEEDALLH-----------------------------------------------VINHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred CCcchhhHHH-----------------------------------------------hhcccceeeeeeeecCCcceEEE
Confidence 3322222222 22366678888888533456888
Q ss_pred EecCCcEEEEEcCCceeeeeceec-------------ccceEEEEe-eccEEEEecC-CCeEEEEecCCCCCCccceecc
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKY-------------DARIKCLAA-VEEVIFTAGF-DNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~i~~~~~-~~~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
-+..++..+|+++.+......... ..-|.+... +.+..+.++. .++..++.+......
T Consensus 230 lTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~------- 302 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG------- 302 (376)
T ss_pred EEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccc-------
Confidence 888888999988877644332211 112233323 3344444433 444444333211100
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec--ccceEEEEEEccCCCeEEEEecCCeEEEEEc
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID--LGFTVTACAIAPDGSEAIVGGQNGKLHIYSI 479 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~ 479 (612)
+..+....+. +..-++++.|...+..+.+|++||.+.+|..
T Consensus 303 ----------------------------~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 303 ----------------------------SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ----------------------------cccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 0001111111 3445677888888899999999999999985
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-20 Score=147.34 Aligned_cols=293 Identities=18% Similarity=0.227 Sum_probs=200.7
Q ss_pred CCEEEEEeCCCC--ce-eeEeccCCCceEEEEECC-CCCEEEEeeCc-------CeEEEeecCCCcee--------eeee
Q 007229 38 GRSVLIRYLDKP--LH-VEFYGEHGYPVTVARYSP-NGEWIASADVS-------GSVRIWGTHNGFVL--------KNEF 98 (612)
Q Consensus 38 ~~~i~i~~~~~~--~~-~~~~~~h~~~v~~~~~s~-d~~~las~~~d-------~~i~iwd~~~~~~~--------~~~~ 98 (612)
++.|.+.+++.+ .. -..|..|.+.|..++-+| |.+.|+++-.+ ..+.||.+...... ...+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 578887776643 22 244677899999999999 55677776432 24789998754321 1122
Q ss_pred e-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce-eeee-----ccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 99 K-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT-VGDF-----DGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 99 ~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
. .+-+.|.|+.|.|++..|++..+.. |.+|..+.+.. +..+ .+|....++-+|+|..+---+....|++
T Consensus 119 dteavg~i~cvew~Pns~klasm~dn~----i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMDDNN----IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEeccCc----eEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc
Confidence 2 4556899999999999999988665 66777775554 3333 2366778889999932212344455889
Q ss_pred EEEEeCCCCeeeeccc-ccccceEEEEECCCCC-eEEEEEcCCcEEEEecCCCC-eeeeeeccCCccccEEEEEEec-CC
Q 007229 172 VNFYEGPPFKFKLSHR-EHSNFVNCIRFSPDGS-KLISVSSDRKGLIYDGKSGE-KIGEFSSEDGHHGSIYAVSWSP-DG 247 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~~~-~~ 247 (612)
+..||+++.+....+. .|...|..+.|+|+.+ +|++++.||.|++||.+.-+ ++..+ .+|...|.++.|+| -.
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el---~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL---PGHSHWVWAVRFNPEHD 271 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc---CCCceEEEEEEecCccc
Confidence 9999999988777754 6888999999999876 67889999999999987644 45555 58999999999999 45
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
+++++++.|..|.+|....-....+................ ..++ .-....+..+..|.
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse-----------------er~k----pL~dg~l~tydehE 330 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE-----------------ERVK----PLQDGQLETYDEHE 330 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhH-----------------Hhcc----cccccccccccccc
Confidence 68899999999999987321111111110000000000000 0000 01122345677899
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
..|.+++|+..+.-.|++-+.||.+.|=.+.
T Consensus 331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 9999999997778899999999999886554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-20 Score=173.04 Aligned_cols=302 Identities=18% Similarity=0.257 Sum_probs=219.4
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCcEEEEEeecCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKSAKVWEILEDG 268 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~iw~~~~~~ 268 (612)
.+...+.|+|-...++++...-.|+|||.+.++.+..+.........|+.+.+-. |..++++++.||.|++|+-....
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3567788999888999988788899999999999988865555667899999876 55689999999999999865443
Q ss_pred -CCCeeEeeeeccCcccccee--eeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 269 -SGGRVIKTFASSTSNAVEDM--LVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 269 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
...+.+..+..-........ -.-..|. .+.+++++.-..|++||............+....++++......++.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 45556665554332211111 1233444 778888888999999998776655555556677788887774448999
Q ss_pred EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 344 LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
++|..||.+++||.+..... ..+..|.-.+
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~d--------------------------s~v~~~R~h~------------------------ 1254 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPD--------------------------SLVCVYREHN------------------------ 1254 (1387)
T ss_pred EEeecCCceEEeecccCCcc--------------------------ccceeecccC------------------------
Confidence 99999999999998754321 1111221111
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC-eEEEEecCCeEEEEEccCcccccceeecccc--C-ceEE
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS-EAIVGGQNGKLHIYSISGNTLTEEMVLEKHR--G-AITV 499 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~--~-~i~~ 499 (612)
...+|..+.+.+.|- .|++|+.||.|++||++............|. + ..++
T Consensus 1255 -------------------------~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1255 -------------------------DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTA 1309 (1387)
T ss_pred -------------------------CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcccee
Confidence 111367777877554 4999999999999999874332223333333 4 5999
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEecCCcceeeec-----ccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 500 IQYSPDVSMFASADGNREAIVWDRVSKEVKLNN-----MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+..+++...+|+|+. +.|+||++...+..... .....+.+.|++|+|-.-+||+|+.|.+|.||....
T Consensus 1310 l~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred eeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 999999999999998 99999999766542111 122345689999999999999999999999999877
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=151.95 Aligned_cols=231 Identities=19% Similarity=0.193 Sum_probs=177.4
Q ss_pred CCCEEEEec----CCEEEEEeCC-CCce---eeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCce------
Q 007229 29 KTDTILYCN----GRSVLIRYLD-KPLH---VEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFV------ 93 (612)
Q Consensus 29 d~~~l~~~~----~~~i~i~~~~-~~~~---~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~------ 93 (612)
+.++||+.. +|...+.-+. +|+. ...+.||+++|..++|+| +...|||||.|.+|.||++..+..
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 456777653 3444444443 3432 334679999999999999 667899999999999999875532
Q ss_pred eeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
....+.+|+..|--++|+|-- ..|+++|.+. .+.+|+..+|+.+-++. |.+.|+++.|+.+|. ++++.+.|+.|
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn---~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkv 197 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN---TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKV 197 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCc---eEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeeccccee
Confidence 356888999999999999964 5677777777 57888888999988888 999999999999999 69999999999
Q ss_pred EEEeCCCCeeeeccccccc-ceEEEEECCCCCeEEEEE---cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 173 NFYEGPPFKFKLSHREHSN-FVNCIRFSPDGSKLISVS---SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
|+||.++++.+..-.+|.+ .-..+.|-.+|..+-+|- .+.++-+||..+-+....+... .....|.---|.+|.+
T Consensus 198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-DtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-DTSNGVLLPFYDPDTS 276 (472)
T ss_pred EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe-ccCCceEEeeecCCCC
Confidence 9999999999988777765 334456778888444432 2688999997765544333222 4556677777888888
Q ss_pred EEEEEe-CCCcEEEEEee
Q 007229 249 KVLTVS-ADKSAKVWEIL 265 (612)
Q Consensus 249 ~l~~~~-~dg~i~iw~~~ 265 (612)
.+..++ .|+.|+.|.+.
T Consensus 277 ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred EEEEEecCCcceEEEEec
Confidence 776555 58999999994
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-18 Score=157.95 Aligned_cols=282 Identities=13% Similarity=0.068 Sum_probs=174.7
Q ss_pred EEEEEeecCCeEEEEeCCC-Ce--eeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCC-CCeeeeeeccCCcc
Q 007229 161 FRIATCGEDFLVNFYEGPP-FK--FKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKS-GEKIGEFSSEDGHH 235 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~-~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~ 235 (612)
++.++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. ++. ...... ...
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-~~~ 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES-PLP 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee-cCC
Confidence 3456667789999999964 33 334443 345677899999999987765 478899999873 332 211111 233
Q ss_pred ccEEEEEEecCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 236 GSIYAVSWSPDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
.....++|+|+++++++++. ++.+.+|++..++...+.+..
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-------------------------------------- 121 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI-------------------------------------- 121 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee--------------------------------------
Confidence 45678999999999888764 789999998321111111110
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEE-EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEE
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTI-LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVW 393 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~ 393 (612)
.. +......+++++. ++++ ++...++.|.+||+.+........
T Consensus 122 --------~~-~~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-------------------------- 165 (330)
T PRK11028 122 --------IE-GLEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQE-------------------------- 165 (330)
T ss_pred --------cc-CCCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccC--------------------------
Confidence 00 1112334555532 4555 455566888888876522111000
Q ss_pred EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec-CC
Q 007229 394 RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ-NG 472 (612)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg 472 (612)
..............++|+|++++++++.+ ++
T Consensus 166 ------------------------------------------------~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 166 ------------------------------------------------PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred ------------------------------------------------CCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence 00000001123567899999999988876 89
Q ss_pred eEEEEEccC--cccccceeeccc------cCceEEEEEcCCCcEEEEEcC-CCeEEEEecCCcceeeeccccc---ccce
Q 007229 473 KLHIYSISG--NTLTEEMVLEKH------RGAITVIQYSPDVSMFASADG-NREAIVWDRVSKEVKLNNMLFH---TARI 540 (612)
Q Consensus 473 ~v~i~d~~~--~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~---~~~i 540 (612)
.|.+|+++. +++.....+..+ ......+.|+|++++|+++.. ++.|.+|++.......+. .++ ....
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~-~~~~~~~~~p 276 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF-EGHQPTETQP 276 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE-eEEEeccccC
Confidence 999999973 333222222211 112346899999999998864 789999999654321111 111 1245
Q ss_pred eEEEecCCCcEEEEeec-CcEEEEEEccC
Q 007229 541 NCLAWSPSSTMVATGSI-DTCVIIYEIGK 568 (612)
Q Consensus 541 ~~~~~s~~~~~l~s~~~-d~~i~iwd~~~ 568 (612)
..+.|+|||++|+++.. +++|.+|+++.
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 68999999999987765 88999999864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=153.24 Aligned_cols=303 Identities=12% Similarity=0.124 Sum_probs=216.8
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC------Ceeeeccc-ccccceEEEEECCCCCeEEEEEcCCc
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP------FKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
+.+.+|.+-|.++.|+.++++ |++|+.|..+++|++.. .+++.... .|...|.|++|......|++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 346789999999999999995 99999999999999653 23333332 35589999999999999999999999
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
|...|+++.+.+..+... ...+.|+.+..+|-.+.|++.+.+|.|.+||..+....+.++.
T Consensus 129 VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~------------------ 189 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL------------------ 189 (609)
T ss_pred eEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee------------------
Confidence 999999999999888321 3345899999999888999999999999999843221111111
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
+.........+.|.+....+|++.+..+-+.+||.+...........
T Consensus 190 -----------------------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~---- 236 (609)
T KOG4227|consen 190 -----------------------------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSM---- 236 (609)
T ss_pred -----------------------------ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhc----
Confidence 11122334556667666888999999999999998765443221100
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec-ccce
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID-LGFT 452 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 452 (612)
...++ ....
T Consensus 237 ----------------------------------------------------------------------~~~L~~~~~~ 246 (609)
T KOG4227|consen 237 ----------------------------------------------------------------------FKGLPQENTE 246 (609)
T ss_pred ----------------------------------------------------------------------cccCcccchh
Confidence 00000 0112
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec-cc-----cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-KH-----RGAITVIQYSPDVSMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~-----~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 526 (612)
-.+..|+|.|..+.+--....-.+||+-+..+. +..+. .. ...+.+++|..|- .+++|+.+-.|++|.+...
T Consensus 247 ~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 247 WMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred hhheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 345678888888777666556667787765542 22222 11 1247778887654 4999999999999987431
Q ss_pred ce----------------------eeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 527 EV----------------------KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 527 ~~----------------------~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.. .+..+.+|.+-++.+.|+|...+|++.+-.+.++||.-..
T Consensus 325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred ccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 10 1345788999999999999999999999999999997543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-18 Score=158.98 Aligned_cols=464 Identities=12% Similarity=0.109 Sum_probs=289.4
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
|...-.++.|+|.| ++|-|+.. .|.|-|..+-+ +.+.+..|+..|+.+.|.|..-...-
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-~iqsie~h~s~V~~VrWap~~~p~~l------------------ 72 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-LIQSIELHQSAVTSVRWAPAPSPRDL------------------ 72 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhh-hhhccccCccceeEEEeccCCCchhc------------------
Confidence 33446788999988 78888654 78899988887 66788899999999999986422111
Q ss_pred ceeeeeccCCceEEEEEEcCC-CCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECC---CC-CeEEEEEcCC
Q 007229 138 TTVGDFDGHSRRVLSCEFKPT-RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP---DG-SKLISVSSDR 212 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg 212 (612)
++|. ...++|++...|.|.+||...+..+..+..|..++..++|-+ +. ..|++-....
T Consensus 73 -----------------lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss 135 (1062)
T KOG1912|consen 73 -----------------LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS 135 (1062)
T ss_pred -----------------cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence 2221 233788999999999999999998888999999999999986 33 4666677788
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc--c------
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS--N------ 283 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~------ 283 (612)
++.+|+..+|+...... .......++.+.| |.+.+...+..|.+.+-+.....+..-..+.++.... .
T Consensus 136 ~lvLwntdtG~k~Wk~~---ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 136 TLVLWNTDTGEKFWKYD---YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred EEEEEEccCCceeeccc---cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence 99999999999988872 3445566689998 7777877777888777766432222222222222111 0
Q ss_pred ------ccc------e-eee----eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEE
Q 007229 284 ------AVE------D-MLV----GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILS 345 (612)
Q Consensus 284 ------~~~------~-~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~ 345 (612)
... . ..+ +....-..++.......+.++|++-.. .+....-..+.+.-+.+. ++..+.+++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~-~l~vvpier~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC-CLAVVPIERGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc-eeEEEEeccCCcceeEeccCCCcceEEE
Confidence 000 0 001 111124566777788889999966433 333333344445555555 445788999
Q ss_pred EecCCcEEEEEcCCceeeeece------ecccceEEEEe--------------eccEEEEecCCCeEEEEecCCCCCCcc
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEK------KYDARIKCLAA--------------VEEVIFTAGFDNKVWRVPLCEGECGDA 405 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~------~~~~~i~~~~~--------------~~~~l~~~~~~~~i~~~~~~~~~~~~~ 405 (612)
.-.||.+.+|-.+......... .....+.+++. ....++..-.+|...+|.+.+++....
T Consensus 292 lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~ 371 (1062)
T KOG1912|consen 292 LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLD 371 (1062)
T ss_pred EecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcc
Confidence 9999999999765422222110 02233333333 233344445677888899887654311
Q ss_pred ceeccCCCcceeeecCCCCcEEEEEeeccEEEee-----cccceeeecccceEEEEEEccCC-------CeEEEEecCCe
Q 007229 406 EHIDVGSQPLDLSLALSSPELALVSTESGVILLD-----SLKVMSKIDLGFTVTACAIAPDG-------SEAIVGGQNGK 473 (612)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~-------~~l~~~~~dg~ 473 (612)
..... ......|+..+....+ ....-+.+-+ .+....+...-...+-..-.|.+ .++|+|++.|+
T Consensus 372 ~~s~~--iel~~pf~f~~~~~~v-~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 372 YRSSS--IELVLPFDFNLSTKLV-GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGT 448 (1062)
T ss_pred ccccc--ccccccccccCceeeh-hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCce
Confidence 11111 1111112211111111 0000001111 11111111100011111111222 36899999999
Q ss_pred EEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE---------cCCCeEEEEecCCcceeeec--ccccccceeE
Q 007229 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA---------DGNREAIVWDRVSKEVKLNN--MLFHTARINC 542 (612)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------~~d~~i~iwd~~~~~~~~~~--~~~~~~~i~~ 542 (612)
|.++|+.++.+ ...+..|...|.++.|--..+++-.+ +.-+.+.+-|+++|....-. ......+|+.
T Consensus 449 V~vvdvst~~v--~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 449 VDVVDVSTNAV--AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred EEEEEecchhh--hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 99999999987 67788899999999997766554332 22245778899998764222 3345688999
Q ss_pred EEecCCCcEEEEeecCcEEEEEEccC
Q 007229 543 LAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 543 ~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+..|..|+||+....|.-+.+||+++
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhcc
Confidence 99999999999999999999999854
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-18 Score=143.65 Aligned_cols=236 Identities=13% Similarity=0.143 Sum_probs=183.3
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC--cCeEEEeecCCCceeee
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV--SGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~--d~~i~iwd~~~~~~~~~ 96 (612)
..+..+.|+.|...|..|+.....+++.+.-............|.-+-||.. ++|..+. -+.+++.+.+.+..+..
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred cceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEE
Confidence 3567788999999999999777778887754442222233445666777766 5555543 34588998887764332
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc---CCceEEEEEEcCCCCEEEEEeec-CCeE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG---HSRRVLSCEFKPTRPFRIATCGE-DFLV 172 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~-d~~i 172 (612)
. .....|.++.+. .++|+++-.+. |.|++..+.+.++++.. +...+.++.+++.+.|+..-++. .|.|
T Consensus 84 ~--~fpt~IL~VrmN--r~RLvV~Lee~----IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 84 I--FFPTSILAVRMN--RKRLVVCLEES----IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred E--ecCCceEEEEEc--cceEEEEEccc----EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 2 235578888875 55788888775 67888889998888754 55567777777777775554444 4899
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCc-EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK-GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
.+||..+.+....+..|.+++.+++|+++|.+||++++.|+ |||+.+.+|+.+.++... .....|.+++|+|++++|+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG-~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG-TYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC-ceeeEEEEEEECCCCCeEE
Confidence 99999999999999999999999999999999999999998 679999999999999643 3356799999999999999
Q ss_pred EEeCCCcEEEEEee
Q 007229 252 TVSADKSAKVWEIL 265 (612)
Q Consensus 252 ~~~~dg~i~iw~~~ 265 (612)
+.+..++|++|.+.
T Consensus 235 ~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 235 ASSNTETVHIFKLE 248 (391)
T ss_pred EecCCCeEEEEEec
Confidence 99999999999993
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=165.84 Aligned_cols=273 Identities=14% Similarity=0.206 Sum_probs=191.7
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC--------CCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS--------GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
..++..|...|+.++|.|-...|++++.||.+.+|+++. -+++.++ .+|.++|.|+++.+++..+++|+
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf---raH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF---RAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE---ecccCceEEEEecCCceEEEeec
Confidence 345677889999999999999999999999999999932 1244445 59999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.||+|+.|++..+ ... +|...+......+.||.+.++.++
T Consensus 364 ~Dg~I~~w~~p~n---~dp-------------------------------------~ds~dp~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 364 IDGTIRCWNLPPN---QDP-------------------------------------DDSYDPSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred cCceeeeeccCCC---CCc-------------------------------------ccccCcchhccceeccccceeeee
Confidence 9999999998311 000 011222233467889999999999
Q ss_pred EEecCCcEEEEEecCCcEEEEEcCCceeeeecee-cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 335 ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
++.. ...|++++.||+++.|+............ ..+....+.+.....+-...+.....+++........
T Consensus 404 ~s~~-~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-------- 474 (577)
T KOG0642|consen 404 LSST-KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-------- 474 (577)
T ss_pred eccc-ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh--------
Confidence 9932 66799999999999999877666221111 2233344444333222222223333333222221100
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH 493 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~ 493 (612)
+.++... ..........+.-+...|.+.+.+++.+|+.|+++|..++++ ......|
T Consensus 475 ---------------------~~~~~s~-~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~--l~s~~a~ 530 (577)
T KOG0642|consen 475 ---------------------LLIFESS-ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI--LHSMVAH 530 (577)
T ss_pred ---------------------eeecccc-CCCcccccCccceEEecCCCCeeEecccCCceeccccccccc--chheeec
Confidence 0000000 000000112466778889999999999999999999999988 7778889
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
...++++++.|+|.+|++++.|+.+++|.+....+...
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 99999999999999999999999999999988777643
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=153.04 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=171.8
Q ss_pred CCCEEEEEeCCCCe-eeEEEEEecCCce---eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-------
Q 007229 113 DGLRIVACGDGKGK-SFVRAFMWDSGTT---VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK------- 181 (612)
Q Consensus 113 ~~~~l~~~~~~~~~-~~i~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------- 181 (612)
+.++++..-+..+. .++.+-.-.+|+. .-.+.+|+++|..++|+|.+...+|+|++|.+|.+|++..+.
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 45666654332211 1333333335543 334679999999999999888899999999999999987654
Q ss_pred eeecccccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 182 FKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
.+..+.+|...|--++|+|. .+.|++++.|.+|.+||+.+|+.+..+ .|...|+++.|+.||.+|++++.|..|+
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l----~hpd~i~S~sfn~dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL----DHPDMVYSMSFNRDGSLLCTTCKDKKVR 198 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec----CCCCeEEEEEeccCCceeeeecccceeE
Confidence 34557899999999999995 467899999999999999999999998 6999999999999999999999999999
Q ss_pred EEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc----CCEEEEEEcCCCCCCceeecCcccceeEEEEE
Q 007229 261 VWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL----GGIISIFSASNLDKAPLSFSGHVKNVSTLTAL 336 (612)
Q Consensus 261 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 336 (612)
+||. .+++.+..-..+..... ...+...+..+++.+. +..+.+||......+.....-..+.=.-+-|.
T Consensus 199 v~dp----r~~~~v~e~~~heG~k~---~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy 271 (472)
T KOG0303|consen 199 VIDP----RRGTVVSEGVAHEGAKP---ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY 271 (472)
T ss_pred EEcC----CCCcEeeecccccCCCc---ceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence 9999 88888877644432211 1222222333555544 56899999877666643322222222223344
Q ss_pred ecCCcEEE-EEecCCcEEEEEcCCcee
Q 007229 337 KISQQTIL-SSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 337 ~~~~~~l~-~~~~dg~i~~wd~~~~~~ 362 (612)
+++.++++ +|-.|+.|+.|.+.....
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCc
Confidence 54456555 566789999998877653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=178.05 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=216.6
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+.+..+.+|...|+|+.|...|.+ +++|+.|..++||..++..+....+||++.|+.++.+.+..++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 445667899999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
.+.++.++..+ .+|++.|++++|+|-. +.+.||++++||. . ...+.....+
T Consensus 260 rl~~~~pvsvL---rghtgavtaiafsP~~----sss~dgt~~~wd~----r-~~~~~y~prp----------------- 310 (1113)
T KOG0644|consen 260 RLPDGAPVSVL---RGHTGAVTAIAFSPRA----SSSDDGTCRIWDA----R-LEPRIYVPRP----------------- 310 (1113)
T ss_pred ecCCCchHHHH---hccccceeeeccCccc----cCCCCCceEeccc----c-ccccccCCCC-----------------
Confidence 99999999888 4999999999999955 6778999999998 3 1111000000
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
..+. ....+.++.+. ..+..+++++.|+.-..|..........
T Consensus 311 -----------------------~~~~-~~~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l~~~~~------------ 353 (1113)
T KOG0644|consen 311 -----------------------LKFT-EKDLVDSILFE-NNGDRFLTGSRDGEARNHEFEQLAWRSN------------ 353 (1113)
T ss_pred -----------------------CCcc-cccceeeeecc-ccccccccccCCcccccchhhHhhhhcc------------
Confidence 0000 11223333333 1266778888887776664332111000
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
. +.-+.
T Consensus 354 ---~-----------------------------------------------------------------------lif~t 359 (1113)
T KOG0644|consen 354 ---L-----------------------------------------------------------------------LIFVT 359 (1113)
T ss_pred ---c-----------------------------------------------------------------------eEEEe
Confidence 0 00000
Q ss_pred EccC-CCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCcceeeecccc
Q 007229 458 IAPD-GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSKEVKLNNMLF 535 (612)
Q Consensus 458 ~s~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 535 (612)
.+.| ..+.+++-.+-.+.+|++.++.+ ...+.+|...+..+.++| +.+...+++.||...|||+-.+..+.....+
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence 1111 13555666677899999999987 678889999999999999 5556678999999999999998887666666
Q ss_pred cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 536 ~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|. .+..-+||+||..++....-|.++|.....
T Consensus 438 h~-kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 438 HG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred cc-eeeccccCCCCceEecCCCCCceEEeccCC
Confidence 54 566779999999999988889999987654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=170.18 Aligned_cols=212 Identities=17% Similarity=0.163 Sum_probs=155.0
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.+||.+... .+.+..|...+...+|||||+.||.++.+ ..|.+||+.+++.. .+....+....++|+|||+
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCCC
Confidence 589999987655 45577888999999999999999987643 46999999887531 2232333455789999999
Q ss_pred EEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-eeecccccccce
Q 007229 116 RIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSNFV 193 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v 193 (612)
+|+.+....+ ...||.++ .+.....+..+...+....|+|||+.++++...++...+|++.... ....+ .+..
T Consensus 261 ~La~~~~~~g--~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 261 RLAFASSKDG--VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred EEEEEEecCC--cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 9998764332 25677776 3445666777888889999999999756666677888888764322 12222 3333
Q ss_pred EEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
....|+|||++|+..+.++ +.+||+.+++...... .. ....+.|+|||++|+.++.++...+|.+
T Consensus 336 ~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---TF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---CC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 4578999999998887755 6669998887653321 11 2356789999999999999998888886
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-19 Score=142.54 Aligned_cols=249 Identities=17% Similarity=0.178 Sum_probs=185.3
Q ss_pred CCceEEEEECC--C-CCEEEEee----CcCeEEEeecC--CCceeeeeeeecCCCeEEEEECCCCC-----EEEEEeCCC
Q 007229 59 GYPVTVARYSP--N-GEWIASAD----VSGSVRIWGTH--NGFVLKNEFKVLSGRIDDLQWSPDGL-----RIVACGDGK 124 (612)
Q Consensus 59 ~~~v~~~~~s~--d-~~~las~~----~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~s~~~~-----~l~~~~~~~ 124 (612)
...+.++.||. + +.+||.|+ ..+.|.|-.+. +++.+...-..|..+++.+.|.|+.+ .||++++
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--
Confidence 45677888884 3 35788887 34566666554 44433333357888999999999873 4555544
Q ss_pred CeeeEEEEEecCCce-e---ee-----eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee---eecccccccc
Q 007229 125 GKSFVRAFMWDSGTT-V---GD-----FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF---KLSHREHSNF 192 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~-~---~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~ 192 (612)
++++|.....+. + .. -..+..++++..|+.-.+.++.+++-|-+..+||++++.. ...+-.|..+
T Consensus 122 ---~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 122 ---FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred ---eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 467776663221 1 11 1346689999999998888899999999999999998733 5567899999
Q ss_pred eEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCC-CcEEEEEeecCCC
Q 007229 193 VNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSAD-KSAKVWEILEDGS 269 (612)
Q Consensus 193 v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d-g~i~iw~~~~~~~ 269 (612)
|..++|...+ +.+|+.+.||.+|+||++..+.-..+........+...++|++ |-+++++-..| ..|.+.|+
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi----- 273 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI----- 273 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe-----
Confidence 9999999865 4788999999999999988765544432223366788889987 55677766554 35666666
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 349 (612)
+.+..++..+++|...|+.++|.+.....+++++.|
T Consensus 274 --------------------------------------------R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 274 --------------------------------------------RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred --------------------------------------------cCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 566677788999999999999997778999999999
Q ss_pred CcEEEEEcCCce
Q 007229 350 GAIIKWIRGVGY 361 (612)
Q Consensus 350 g~i~~wd~~~~~ 361 (612)
....+||+....
T Consensus 310 ~qaliWDl~q~~ 321 (364)
T KOG0290|consen 310 CQALIWDLQQMP 321 (364)
T ss_pred ceEEEEeccccc
Confidence 999999987543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-19 Score=144.86 Aligned_cols=238 Identities=14% Similarity=0.183 Sum_probs=183.4
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc---eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL---HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.+.|+|.||++|+..+|.+. .+.|.||.....+ ..+++..|...|++++|+|..+.|++++.|..-.||....+..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 45789999999999999998 5699999887554 6778999999999999999999999999999999999944332
Q ss_pred --eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce----eeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 94 --LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 94 --~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
....+..+....+++.|+|.+..+|+++... .+.|+-++.... .+.-+.+...|++++|+|++- +++.|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs 165 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGS 165 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccc
Confidence 2335667899999999999999999999887 677777764332 122345678899999999998 799999
Q ss_pred cCCeEEEEeC-----C-------------CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC-eeeee
Q 007229 168 EDFLVNFYEG-----P-------------PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE-KIGEF 228 (612)
Q Consensus 168 ~d~~i~~wd~-----~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~ 228 (612)
.|+..+++.. + -|+++..+....+.+..+.|+|+|+.|+-.+.|..+.+-|..... .+...
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 9999999952 1 123333444456789999999999999999999999999977664 23333
Q ss_pred eccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 229 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
. ...-+..++.|-.+.. ++.++.|..=.++.
T Consensus 246 ~---~~~lP~ls~~~ise~~-vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 246 A---TAQLPLLSVSWISENS-VVAAGYDCGPVLFV 276 (361)
T ss_pred h---hccCCceeeEeecCCc-eeecCCCCCceEEE
Confidence 1 2336778888876554 55555653333333
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-17 Score=152.98 Aligned_cols=271 Identities=12% Similarity=0.101 Sum_probs=177.1
Q ss_pred cCCEEEEEeCCC-Cc--eeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCC-CceeeeeeeecCCCeEEEEEC
Q 007229 37 NGRSVLIRYLDK-PL--HVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHN-GFVLKNEFKVLSGRIDDLQWS 111 (612)
Q Consensus 37 ~~~~i~i~~~~~-~~--~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~s 111 (612)
.++.|.+|++.+ ++ .+..+. +.+....++++||+++|++++ .++.|.+|++.. ++..........+....++|+
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~ 88 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD 88 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC
Confidence 479999999964 33 334443 446678899999999987664 578899999973 331111111233467889999
Q ss_pred CCCCEEEEEeCCCCeeeEEEEEecC-C---ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec--
Q 007229 112 PDGLRIVACGDGKGKSFVRAFMWDS-G---TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-- 185 (612)
Q Consensus 112 ~~~~~l~~~~~~~~~~~i~i~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-- 185 (612)
|++++|+++....+ .+.+|..++ + +.+..+. +......++++|++++++++...++.|.+||+.+...+..
T Consensus 89 ~~g~~l~v~~~~~~--~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 89 HQGRFLFSASYNAN--CVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred CCCCEEEEEEcCCC--eEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 99999999876543 467777763 2 2233333 2344677899999998777888889999999976332211
Q ss_pred ---cc-ccccceEEEEECCCCCeEEEEEc-CCcEEEEecCC--CCe--eeeeecc-C--CccccEEEEEEecCCCEEEEE
Q 007229 186 ---HR-EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKS--GEK--IGEFSSE-D--GHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 186 ---~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~--~~~--~~~~~~~-~--~~~~~v~~i~~~~~~~~l~~~ 253 (612)
.. ........++|+|+|++++++.. +++|.+|+++. ++. +..+... . .+......+.++|++++++++
T Consensus 166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 11 11234678999999999988877 89999999974 322 3332110 0 111233468899999999988
Q ss_pred eC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc-CCEEEEEEcCC
Q 007229 254 SA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL-GGIISIFSASN 315 (612)
Q Consensus 254 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 315 (612)
.. ++.|.+|++...+...+.+...... .....+.+..+++.++++.. ++.|.+|++..
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~~----~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQPTE----TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEecc----ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 54 6899999994332222333333221 11122344455778887765 88999998653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-18 Score=133.68 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=175.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCC---------C-ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDK---------P-LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~---------~-~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.|.+-++||.+++|++++ .|.|.+..+++ + ..+....+|+++|..++|.. .+|++++ ||.|+=|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 466778999999999998 79999998752 1 23344579999999999993 3677775 599999987
Q ss_pred CCCce-------eeeeeeecC-----CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEc
Q 007229 89 HNGFV-------LKNEFKVLS-----GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFK 156 (612)
Q Consensus 89 ~~~~~-------~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (612)
..... .......|. ..|+++-..|....++.++.|+ .+.-++.++|+..+.+++|++.|.++.--
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~---~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG---VIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe---EEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 64322 111122232 3689999999888887777666 45666667999999999999999999984
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccc---------c-ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE---------H-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---------~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
.... .+++|++||++|+||.++++.+..+.. | ...|-+++.+ ..+|++|+ ...+.+|+++..++..
T Consensus 166 ~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 166 NANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred ccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceE
Confidence 4444 499999999999999999998876542 2 2345666654 56888765 5679999999999999
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+ ....++..+.|.. +.+++++..+.+.-|.+
T Consensus 242 vf----pipa~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 242 VF----PIPARVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EE----ecccceeEeeeec--ceEEEeccccceeeeee
Confidence 99 6677888899974 45778888888999987
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=146.33 Aligned_cols=310 Identities=12% Similarity=0.106 Sum_probs=216.7
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCC------CCceeeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEe
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLD------KPLHVEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIW 86 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~------~~~~~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iw 86 (612)
.+|.|.|+++.||.++++|++|+ +..+++|+++ +++++.... .|...|.|++|...++.|.+|..+++|.+-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 36889999999999999999999 6899999986 456666544 356899999999999999999999999999
Q ss_pred ecCCCceeeeeeeec---CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc-e--eeeeccCCceEEEEEEcCCCC
Q 007229 87 GTHNGFVLKNEFKVL---SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT-T--VGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 87 d~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~-~--~~~~~~~~~~v~~~~~~~~~~ 160 (612)
|+++.+.+. ...| .+.|+.+..+|-...|++.+.++ .+.+|+..... . +..+.........+.|+|..+
T Consensus 133 DiEt~qsi~--V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 133 DIETKQSIY--VANENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred ecccceeee--eecccCcccceeecccCCCCceEEEEecCc---eEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999987543 2233 35899999999999999999888 34444433222 1 222333456778899999999
Q ss_pred EEEEEeecCCeEEEEeCCCCee-eec------ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe-eeeeec-c
Q 007229 161 FRIATCGEDFLVNFYEGPPFKF-KLS------HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK-IGEFSS-E 231 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~-~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~-~ 231 (612)
.+|++.+..+-+-+||.+.... +.. ++.....-.+..|+|+|+.+++.-....-.+||+.+..+ +..+.. +
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 8999999999999999765432 111 111122336778999999999877666667888876443 223310 0
Q ss_pred C--CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 232 D--GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 232 ~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
. .....+.+++|..|-. +++|+.+=.|++|.+......+...+.-.... ..... +
T Consensus 288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~--~~~~~----------~---------- 344 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEE--EMPSE----------I---------- 344 (609)
T ss_pred Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchh--hCchh----------h----------
Confidence 0 1124577888886554 99999999999999954333332111100000 00000 0
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
--......+++|..-+..+.|++. ..+|++.+....+++|...
T Consensus 345 -----~i~~~~~VLrGHRSv~NQVRF~~H-~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 -----FIEKELTVLRGHRSVPNQVRFSQH-NNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred -----eecceeEEEecccccccceeecCC-cceEeccchhhheeccccc
Confidence 002345678899999999999932 6788888999999999643
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=152.71 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=150.9
Q ss_pred eeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee-
Q 007229 21 GILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF- 98 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~- 98 (612)
-.+++|++||..+++++ ||.++||+.++...+..+..|...|.++.|||||++||+-+.| ..+||+..++..+...-
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 37899999999999998 9999999988888888888999999999999999999999999 99999999996433211
Q ss_pred eecCCCeEEEEECCCC---CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 99 KVLSGRIDDLQWSPDG---LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~---~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
.........+.|+.|+ .+++++.... ++ .+.. ..+.+|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~----------------------------------~~-~v~~----~~~~~w 266 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFP----------------------------------GG-GVRL----CDISLW 266 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCC----------------------------------CC-ceeE----EEeeee
Confidence 2223345556666555 2222111111 00 0111 123344
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
+-...-...+.......|.+++.++||++++.|+.||.|.|++..+-+.++-. ++.|...|+.+.|+||.+++++.+.
T Consensus 267 ~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 267 SGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred ccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCccccccc
Confidence 43211111122223346999999999999999999999999999988888777 4689999999999999999999999
Q ss_pred CCcEEEEEe
Q 007229 256 DKSAKVWEI 264 (612)
Q Consensus 256 dg~i~iw~~ 264 (612)
+....+..+
T Consensus 345 ~~~~~v~~l 353 (398)
T KOG0771|consen 345 DNEAAVTKL 353 (398)
T ss_pred CCceeEEEE
Confidence 999999888
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-17 Score=148.52 Aligned_cols=331 Identities=14% Similarity=0.057 Sum_probs=200.7
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
.++++-..++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++ ........
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i----~~G~~~~~ 82 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI----KVGGNPRG 82 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----E-SSEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----ecCCCcce
Confidence 34567778899999999999999888765554456789999999999999999999999999999999 44556789
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccc--cceeeeeeec--cCC-EEEEEEcCCEEEEEEcC
Q 007229 241 VSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNA--VEDMLVGCLW--QND-HLITVSLGGIISIFSAS 314 (612)
Q Consensus 241 i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~-~~~~~~~~~~i~~~~~~ 314 (612)
+++++||++++++. .++.+.++|. ++.+.++.+....... ......++.. ... .++..-..+.+.+.|..
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~----~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDA----ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEET----TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred EEEcCCCCEEEEEecCCCceeEecc----ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 99999999998776 5799999999 8999998886543221 2223333322 233 45555566899999877
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEE-EEEecCCcEEEEEcCCceeeeecee----cccceEEEEeeccEEEEecCC
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTI-LSSSYDGAIIKWIRGVGYSSKLEKK----YDARIKCLAAVEEVIFTAGFD 389 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~i~~~~~~~~~l~~~~~~ 389 (612)
....................+.+ +++++ ++...+..|-++|..+++....... |..+.
T Consensus 159 d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~---------------- 221 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG---------------- 221 (369)
T ss_dssp TSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE----------------
T ss_pred cccccceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeecccccccccc----------------
Confidence 66443333333344555565553 25555 4456677888888887665443210 11111
Q ss_pred CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc--eEEEEEEccCCCeEEE
Q 007229 390 NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF--TVTACAIAPDGSEAIV 467 (612)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~ 467 (612)
..+.|.. ++.. ....+...+.
T Consensus 222 -------------------------------------------------------~~~php~~g~vw~--~~~~~~~~~~ 244 (369)
T PF02239_consen 222 -------------------------------------------------------ANFPHPGFGPVWA--TSGLGYFAIP 244 (369)
T ss_dssp -------------------------------------------------------EEEEETTTEEEEE--EEBSSSSEEE
T ss_pred -------------------------------------------------------ccccCCCcceEEe--eccccceecc
Confidence 1111111 1111 1222333322
Q ss_pred EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE----cCCCeEEEEecCCcceeeecccccccceeEE
Q 007229 468 GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA----DGNREAIVWDRVSKEVKLNNMLFHTARINCL 543 (612)
Q Consensus 468 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 543 (612)
.-....+.+||..+.+. ...++...++ .-+..+|+++++.+. ...++|.++|.++.+.......+....+..+
T Consensus 245 ~ig~~~v~v~d~~~wkv--v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKV--VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEE--TTT-STTTBTSE--EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred cccCCccccchhhcCeE--EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 22333566788877776 5556655556 778889999999988 5568999999999977644333233459999
Q ss_pred EecCCCcEEEEee--cCcEEEEEEccCCCcceeeeec
Q 007229 544 AWSPSSTMVATGS--IDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 544 ~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
.|++||+++..+. .++.|.+||..+ . +.+..+.
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D~~T-l-~~~~~i~ 356 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYDAKT-L-KEKKRIP 356 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEETTT-T-EEEEEEE
T ss_pred EECCCCCEEEEEEecCCCEEEEEECCC-c-EEEEEEE
Confidence 9999999765443 344799999998 5 5555544
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-18 Score=146.40 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=69.8
Q ss_pred cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
...|++++.|+||+++|.|+.||.|.|++..+.+.+......|..-|+.+.|+||.+++++.+.|....|..+.-
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 457999999999999999999999999999999998777888999999999999999999999999999988765
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-18 Score=159.06 Aligned_cols=275 Identities=14% Similarity=0.166 Sum_probs=198.6
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee--e----eceecccceEEEEe--
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS--K----LEKKYDARIKCLAA-- 378 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~----~~~~~~~~i~~~~~-- 378 (612)
.+.+|++..+..+...+. -...|.++.|++.+..+++.|..+|.|.+||++..... . ....|..++..+.+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 688999888855544443 56789999999777999999999999999999987763 2 12228888888888
Q ss_pred --eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 379 --VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 379 --~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
.+..+++++.||.|..|+++.-............ ............++++
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~----------------------------~~~~~~~~~~~~~t~~ 353 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK----------------------------KHKGQQSSKAVGATSL 353 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccc----------------------------cccccccccccceeeE
Confidence 3355999999999999987655432110000000 0001111223468889
Q ss_pred EEcc-CCCeEEEEecCCeEEEEEccCccccc------ceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC-Ccce
Q 007229 457 AIAP-DGSEAIVGGQNGKLHIYSISGNTLTE------EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV-SKEV 528 (612)
Q Consensus 457 ~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~ 528 (612)
+|.+ +-..+++|+++|.|..-+..+.+... ......|.++|+++.++|=+..++..+.|-+++||... ...+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 9988 45678899999988885444333222 33456788999999999977655555559999999988 4444
Q ss_pred eeecccccccceeEEEecCCCc-EEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEE
Q 007229 529 KLNNMLFHTARINCLAWSPSST-MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRV 606 (612)
Q Consensus 529 ~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~ 606 (612)
+ ..+..+...+++++|||-.. .++++..||.+.+||+.............+......+.|+ +++.|+.|...|.+++
T Consensus 434 l-~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 434 L-LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred c-hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 4 44555778899999999764 6778888999999999874435556665566666777777 6999999999999999
Q ss_pred EEecc
Q 007229 607 WRLAT 611 (612)
Q Consensus 607 w~~~~ 611 (612)
|++..
T Consensus 513 ~~l~~ 517 (555)
T KOG1587|consen 513 LKLSE 517 (555)
T ss_pred EEcCc
Confidence 99853
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-19 Score=154.45 Aligned_cols=137 Identities=24% Similarity=0.404 Sum_probs=111.0
Q ss_pred eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCcE
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKSA 259 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i 259 (612)
+...+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+. .+|...|.++.|-| +.+.+++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceE
Confidence 345688999999999999999999999999999999999888888884 58999999999999 56789999999999
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
+++|+....+.+.- .........+..|...|..++..+..
T Consensus 120 ~lfdl~~~~~~~~d----------------------------------------~~~~~~~~~~~cht~rVKria~~p~~ 159 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMD----------------------------------------HGMEETTRCWSCHTDRVKRIATAPNG 159 (758)
T ss_pred EEEecccccccccc----------------------------------------cCccchhhhhhhhhhhhhheecCCCC
Confidence 99999321111110 11122334556788899999888766
Q ss_pred CcEEEEEecCCcEEEEEcCCc
Q 007229 340 QQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~ 360 (612)
...+.++++||+++.+|++..
T Consensus 160 PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 160 PHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred CceEEEecCCcceeeecccCC
Confidence 789999999999999998864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-16 Score=148.27 Aligned_cols=226 Identities=16% Similarity=0.137 Sum_probs=168.4
Q ss_pred CEEEEecCCEEEEEeCCCCceeeE------eccC-----------------------------------CCceEEEEECC
Q 007229 31 DTILYCNGRSVLIRYLDKPLHVEF------YGEH-----------------------------------GYPVTVARYSP 69 (612)
Q Consensus 31 ~~l~~~~~~~i~i~~~~~~~~~~~------~~~h-----------------------------------~~~v~~~~~s~ 69 (612)
++|.++.+-.|.+||+..+..+.. +..| .+.|....+..
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g~~l~~ 97 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIERFSDWIFGAKLFE 97 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhhhccccccccchhh
Confidence 789999999999999987754332 2234 01122222333
Q ss_pred CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC
Q 007229 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH 146 (612)
Q Consensus 70 d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 146 (612)
+.+.++.+..+..+.+||...+..+......... ...-+.++++.-++++++--+ .+.+|.|...++-..+.+|
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~---~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG---EIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc---cEEEEeccccCCcceeccc
Confidence 4567888888889999999887633222211111 122344677777888877666 3566666633333378999
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
.+.+.++.++.+|.+ +++.++|.++|+|++.+.+... +.-+|+..|..+.|.|+ ++++++.|-+.++|+. .+..+
T Consensus 175 eG~iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l 250 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQL 250 (967)
T ss_pred CCceEEEEEccCCcE-EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-cccee
Confidence 999999999999995 9999999999999999988776 56689999999999998 8999999999999974 45555
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..+. ......+..++..++....++++.|+.+++|++.
T Consensus 251 ~~y~--~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 251 EVYD--EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred hhhh--hhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 5552 2334678999999999999999999999999983
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=161.34 Aligned_cols=306 Identities=17% Similarity=0.137 Sum_probs=202.6
Q ss_pred CCeeeecccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCe-------eeeeeccCCccccEEEEEEecCCCEE
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEK-------IGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.|..+..+..|...+..++.++.. .++++|+.||+|++||.+.-.. ..++ ......+..+...+.++.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty---s~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY---SPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE---eccCCceEEEEeccCCCeE
Confidence 467778888999999999988765 8999999999999999864221 1222 1356788999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
|+++.||.|++.+++............ ++-+ .......+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~-------------------------------ri~n----------~~~~g~vv 1152 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQV-------------------------------RIPN----------LKKDGVVV 1152 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeee-------------------------------eccc----------ccCCCceE
Confidence 999999999999983210000000000 0000 00111112
Q ss_pred eEEEEEecCCc-EEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceec
Q 007229 331 STLTALKISQQ-TILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHID 409 (612)
Q Consensus 331 ~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (612)
..-++...... .++.+...+.|..||++........ ..
T Consensus 1153 ~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l-------------------------------k~---------- 1191 (1431)
T KOG1240|consen 1153 SMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL-------------------------------KN---------- 1191 (1431)
T ss_pred EeecccccccceeEEEEEeccceEEecchhhhhHHhh-------------------------------hc----------
Confidence 22223322244 6777778888888887754322211 11
Q ss_pred cCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee
Q 007229 410 VGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV 489 (612)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 489 (612)
....+.|++++.+|.+.++++|+..|.+.+||++-+.+.....
T Consensus 1192 -------------------------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1192 -------------------------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred -------------------------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 1123469999999999999999999999999999877644444
Q ss_pred eccccCceEEEEEcCC---CcEEEEEc--CCCeEEEEecCCcceeeecccc------------------cccceeEEEec
Q 007229 490 LEKHRGAITVIQYSPD---VSMFASAD--GNREAIVWDRVSKEVKLNNMLF------------------HTARINCLAWS 546 (612)
Q Consensus 490 ~~~~~~~i~~~~~s~~---~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~------------------~~~~i~~~~~s 546 (612)
.+. ..+|+.+..+|- ....++++ ..+.|.+|++.++.+......+ +..+.....+.
T Consensus 1235 ~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1235 HPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred Ccc-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence 443 478888888773 23444443 5789999999998664322221 11112233444
Q ss_pred CCCcEEEEeecCcEEEEEEccCCCcce-----------------------------------------------ee----
Q 007229 547 PSSTMVATGSIDTCVIIYEIGKPASSR-----------------------------------------------IT---- 575 (612)
Q Consensus 547 ~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------------------------------------------~~---- 575 (612)
.-+.++.+|+.|..|+.||...+. .. ..
T Consensus 1314 ~~~~~~ltggsd~kIR~wD~~~p~-~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~ 1392 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPE-ISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRP 1392 (1431)
T ss_pred cCCceeeecCCccceeeccCCCcc-cccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhccccccccc
Confidence 455688999999999999976522 00 00
Q ss_pred ----eecccccCeeeEEEe--cCceEEEccCCCeEEEEE
Q 007229 576 ----IKNAHLGGVYGVAFM--DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 576 ----~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~w~ 608 (612)
.-..|.++|+++++. +-.+|++++.||.|++|.
T Consensus 1393 ~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1393 GPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 112577899999998 555799999999999994
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=154.75 Aligned_cols=310 Identities=20% Similarity=0.246 Sum_probs=228.6
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCc
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKS 258 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~ 258 (612)
.+...+..|.+.|..+.|+..|..|++++.|..|.+||...++....+ ..+|...|....|.| +.+.+++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCc
Confidence 344567889999999999999999999999999999999999888877 458988888888988 4567999999999
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI 338 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (612)
+++=.+. .++.+.. ...+..|.++|..++..+.
T Consensus 211 vr~s~i~---~t~~~e~--------------------------------------------t~rl~~h~g~vhklav~p~ 243 (559)
T KOG1334|consen 211 VRVSEIL---ETGYVEN--------------------------------------------TKRLAPHEGPVHKLAVEPD 243 (559)
T ss_pred eeeeeec---cccceec--------------------------------------------ceecccccCccceeeecCC
Confidence 9987772 1111111 2334458899999988876
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeecee---ccc---ceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceec
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKK---YDA---RIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHID 409 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~---~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (612)
....|.+++.|+.+.-+|++.......... +.. ....++. ....+++++.|..+++||.+.-........
T Consensus 244 sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~- 322 (559)
T KOG1334|consen 244 SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGV- 322 (559)
T ss_pred CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccch-
Confidence 689999999999999999887665443322 222 3344555 456889999999999998765443200000
Q ss_pred cCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc-----
Q 007229 410 VGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL----- 484 (612)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~----- 484 (612)
. -.+.| ..+.. ...-.|++++|+.++.-|.+...|-.|+++.-.-+.-
T Consensus 323 ----~--~~f~p--------------------~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 323 ----L--DKFCP--------------------HHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ----h--hhcCC--------------------ccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 0 00000 00111 2345699999999888888888888999995432211
Q ss_pred ------ccceeeccccCc--eEEEE-EcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 485 ------TEEMVLEKHRGA--ITVIQ-YSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 485 ------~~~~~~~~~~~~--i~~~~-~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
......++|.+. |..+- |-|...|+++|+.-|.|.||+-.+++.+ ..+.+...-|+||.-+|--..||+.
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii-~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII-RFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH-HHhhcccceEeccCCCCCCchhhcc
Confidence 112236677653 55555 4688899999999999999999999887 5666666799999999999999999
Q ss_pred ecCcEEEEEEccC
Q 007229 556 SIDTCVIIYEIGK 568 (612)
Q Consensus 556 ~~d~~i~iwd~~~ 568 (612)
+-|.-|+||-..+
T Consensus 455 Gid~DVKIWTP~~ 467 (559)
T KOG1334|consen 455 GIDHDVKIWTPLT 467 (559)
T ss_pred CCccceeeecCCc
Confidence 9999999998744
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=159.05 Aligned_cols=294 Identities=15% Similarity=0.249 Sum_probs=207.1
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc---ccceEEEEECC--CCCeEEEEEcCCcEEEEecCCC-
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH---SNFVNCIRFSP--DGSKLISVSSDRKGLIYDGKSG- 222 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~- 222 (612)
+...+.|+|-.+ .++++...-.|++||.+.++....+..+ ...|+.+.+-. |..++++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 456788899888 5888887889999999999988776543 34688888865 4568999999999999974322
Q ss_pred ----CeeeeeeccC----CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 223 ----EKIGEFSSED----GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 223 ----~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
+.+....... +..+.=.-+.|.....+|++++.-..|++||. ........+...... .+.++..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa----~~E~~~~diP~~s~t----~vTaLS~ 1216 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDA----HKEQVVADIPYGSST----LVTALSA 1216 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEec----ccceeEeecccCCCc----cceeecc
Confidence 2222221110 11111144567776667777777889999999 777777776655322 2222222
Q ss_pred c---CCEEEEEEcCCEEEEEEcCCCCC--CceeecCcccc--eeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 295 Q---NDHLITVSLGGIISIFSASNLDK--APLSFSGHVKN--VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 295 ~---~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
+ ++.+++|..||.+++||.+.... .+...+.|+.. |..+.+...+-..+++|+.||.|++||++.........
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 2 78999999999999999776544 67778888887 87777774334479999999999999998752211111
Q ss_pred ecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee
Q 007229 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI 447 (612)
Q Consensus 368 ~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (612)
.....
T Consensus 1297 ---------------------------------------------------------------------------iv~~~ 1301 (1387)
T KOG1517|consen 1297 ---------------------------------------------------------------------------IVAHW 1301 (1387)
T ss_pred ---------------------------------------------------------------------------eeecc
Confidence 00000
Q ss_pred cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee----ccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 448 DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL----EKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 448 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
+.++..+++..+++...+|+|+. +.|.||++.+.++-..+.. ....+.+.|++|+|-.-+||+|+.|.+|.||..
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 01224789999999999999998 9999999987654222211 123456899999999999999999999999987
Q ss_pred CCcc
Q 007229 524 VSKE 527 (612)
Q Consensus 524 ~~~~ 527 (612)
....
T Consensus 1381 ~k~~ 1384 (1387)
T KOG1517|consen 1381 EKPR 1384 (1387)
T ss_pred CCcC
Confidence 6554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=162.38 Aligned_cols=215 Identities=18% Similarity=0.257 Sum_probs=153.2
Q ss_pred CCCceeEEEEccCCCEEEEec-C---CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEe--ecC
Q 007229 17 ERGRGILISGNPKTDTILYCN-G---RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIW--GTH 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iw--d~~ 89 (612)
+.+.+.+.+|||||+.|++.+ + ..|++||+.+++... +....+...+++|||||+.|+.++ .+|.+.|| |+.
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 455789999999999999986 2 479999999876433 222223344789999999988764 67876665 555
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
+++ ...+..+...+....|+|||+.|+.++...+ ..+||.++. +.....+ .+.. ....|+|+|++ ++..+.
T Consensus 281 ~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g--~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~-ia~~~~ 352 (429)
T PRK01742 281 GGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSG--SPQVYRMSASGGGASLV-GGRG--YSAQISADGKT-LVMING 352 (429)
T ss_pred CCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE-EEEEcC
Confidence 554 3356667777889999999999988775433 257888773 2223333 3433 46789999996 666655
Q ss_pred CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEec--CCCCeeeeeeccCCccccEEEEEEecC
Q 007229 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG--KSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
++ +.+||+.+++.......+ ....+.|+|||++|++++.++...+|.+ .+|+....+ ..|.+.+...+|+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l---~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL---PGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc---cCCCCCCCCcccCCC
Confidence 65 556999888754322222 2356789999999999999998888875 357777777 266777888999874
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=166.69 Aligned_cols=283 Identities=17% Similarity=0.186 Sum_probs=213.3
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
+.+.+|...|+|+.|...|.++++++++. .++||..+++.++...+||.+.|+.++.+.+.- ++++++.|..|++|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~---lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDR---LVKIWSMETARCLASCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccc---eeeeeeccchhhhccCCCCccccchhccchhhh-hhhhcccCceEEEE
Confidence 35668999999999999999999999998 678999889999999999999999999999887 69999999999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec-cCCccccEEEEEEecCCCEEEEEe
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS-EDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
.+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+-.-.+..... .......+.++.|..++..+++++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999999999999999999965 678899999999872211111110 112335677788888888899999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.|+.-..|.+ ... .+ +...+.-+.
T Consensus 336 ~d~ea~n~e~----~~l---------------------~~-------------------------------~~~~lif~t 359 (1113)
T KOG0644|consen 336 RDGEARNHEF----EQL---------------------AW-------------------------------RSNLLIFVT 359 (1113)
T ss_pred CCcccccchh----hHh---------------------hh-------------------------------hccceEEEe
Confidence 9998888876 111 01 111111111
Q ss_pred EEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceeccC
Q 007229 335 ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG 411 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 411 (612)
.+.....+.+++-.+-.+++|++.++........|...+..+.+ +.....+++.||...+||+-.+.......
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~---- 435 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF---- 435 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee----
Confidence 11011245555666778899999999888888888888888887 66778899999999999998776541111
Q ss_pred CCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCc
Q 007229 412 SQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGN 482 (612)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~ 482 (612)
...+.+...+||+||..++....-|.++|.....+
T Consensus 436 ------------------------------------~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 436 ------------------------------------IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ------------------------------------cccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 11234556677888777777777777777765433
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-19 Score=153.71 Aligned_cols=310 Identities=17% Similarity=0.195 Sum_probs=230.8
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFV 129 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i 129 (612)
...|.+|.+.|..|.|...|..|++|+.|..|.+||...+.....-..+|...|....|-|. .+.+++++.++. +
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq---v 211 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ---V 211 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc---e
Confidence 44578999999999999999999999999999999999998777677899999999999884 467888888884 4
Q ss_pred EEEEec-CCce--eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc---ccccc---ceEEEEECC
Q 007229 130 RAFMWD-SGTT--VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH---REHSN---FVNCIRFSP 200 (612)
Q Consensus 130 ~i~~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~---~v~~~~~s~ 200 (612)
++-... ++.. ...+..|.++|..++.-|+.++-|.+++.|+.+.-.|++.......+ ..+.. ...+++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 554444 3332 45567899999999999999999999999999999998876544332 22333 567889998
Q ss_pred CCC-eEEEEEcCCcEEEEecCCCCee------eeeec---cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC
Q 007229 201 DGS-KLISVSSDRKGLIYDGKSGEKI------GEFSS---EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 201 ~~~-~l~~~~~dg~i~vwd~~~~~~~------~~~~~---~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
... ++++++.|..+++||.+.-... ..+.. .....-.|++++|+.++.-|++...|-.|++++-.. ..
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~--~~ 369 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM--GD 369 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc--cc
Confidence 654 8899999999999997643221 22210 112345699999998777777777888899985411 11
Q ss_pred CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc--ceeEEEEEecCCcEEEEEec
Q 007229 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--NVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~ 348 (612)
+........ ........+++|.. .|..+.|..+...++++|+.
T Consensus 370 G~~p~~~s~-----------------------------------~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 370 GSEPDPSSP-----------------------------------REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred CCCCCCCcc-----------------------------------hhhccchhhcccccccccceeeeccCccceEEecCc
Confidence 100000000 00111123566654 68888888555789999999
Q ss_pred CCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCC
Q 007229 349 DGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 349 dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
=|.|.+|+-.+++.+........-|+||.. .--.|++.+.|..|++|...+..
T Consensus 415 CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 415 CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 999999999999999888776668999999 45679999999999999874433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-19 Score=156.35 Aligned_cols=251 Identities=16% Similarity=0.228 Sum_probs=188.2
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCC--------CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEE
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDK--------PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRI 85 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~--------~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~i 85 (612)
..+...+.+++|.|-...|++++ ++.|.+|++.. -+++.+|.+|.++|.|++++++++.+.+|+.||+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 35667888999999999999999 89999999932 2467789999999999999999999999999999999
Q ss_pred eecCCC---------ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccC--CceEEE
Q 007229 86 WGTHNG---------FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGH--SRRVLS 152 (612)
Q Consensus 86 wd~~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~--~~~v~~ 152 (612)
|++... ..+...+.+|.+.++.+++|+....|++++.++ +++.|+ ...+ ..|... .+...+
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg-----Tvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG-----TVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc-----eEEeeccCCcCc-cccCCccccCCcce
Confidence 965421 125668889999999999999999999999998 355555 3333 333322 233445
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
+.|-.......++...-+.--+++.+.......+.. -...+.-+.++|.+...+++..|+.|+++|..+++.+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 555444321222222223233333333333322221 1245777889999999999999999999999999999
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
... ..|...++++++.|+|-+|++++.|+.+++|.+ ....++....
T Consensus 525 ~s~---~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl----d~k~~~~es~ 570 (577)
T KOG0642|consen 525 HSM---VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL----DVKTCVLEST 570 (577)
T ss_pred hhe---eeccceecceeecCCCceEEeecCCceeehhhc----cchheeeccc
Confidence 887 389999999999999999999999999999999 6666655443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-15 Score=137.64 Aligned_cols=194 Identities=13% Similarity=0.116 Sum_probs=134.4
Q ss_pred EEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEE
Q 007229 75 ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCE 154 (612)
Q Consensus 75 as~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~ 154 (612)
++-..++.|.|.|..+.+ +...+......-..+.|+|||+++.+++.++ .+.+++..+++.+.+++... ....++
T Consensus 10 V~~~~~~~v~viD~~t~~-~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg---~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNK-VVARIPTGGAPHAGLKFSPDGRYLYVANRDG---TVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp EEEGGGTEEEEEETTT-S-EEEEEE-STTEEEEEE-TT-SSEEEEEETTS---EEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred EEecCCCEEEEEECCCCe-EEEEEcCCCCceeEEEecCCCCEEEEEcCCC---eEEEEECCcccEEEEEecCC-CcceEE
Confidence 455678999999999988 4446655444445678999999999998776 68888888999999987644 467899
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeee
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIG 226 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~ 226 (612)
+++||+++++++..++.+.++|.++.+.++.+.. ....+.++..+|....++..-. .+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 9999998777888899999999999998887643 2346788888898885655555 4888888887765443
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEE-eCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
.-. ...........|+|++++++++ ..+..+.++|. .+++.+..+..
T Consensus 165 ~~~--i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~----~~~k~v~~i~~ 212 (369)
T PF02239_consen 165 VTT--IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT----KTGKLVALIDT 212 (369)
T ss_dssp EEE--EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET----TTTEEEEEEE-
T ss_pred eee--ecccccccccccCcccceeeecccccceeEEEee----ccceEEEEeec
Confidence 211 1344566788999999988765 44678999998 77776655543
|
... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-17 Score=143.99 Aligned_cols=214 Identities=18% Similarity=0.215 Sum_probs=154.2
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeecee----cccceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceeccCC
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKK----YDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 412 (612)
+--++.|-.-|.+.+.|....+..++... ....++|+.+ +...++.+-.+|.+.++|.......
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~--------- 255 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA--------- 255 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---------
Confidence 56677888889999998877444332222 4577888888 6677888888888888876221110
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK 492 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 492 (612)
.-.+-..-+++..+++...-+. .+... +....-
T Consensus 256 ---------------------------------------t~p~~~~~k~~~~f~i~t~ksk------~~rNP--v~~w~~ 288 (636)
T KOG2394|consen 256 ---------------------------------------TAPSYQALKDGDQFAILTSKSK------KTRNP--VARWHI 288 (636)
T ss_pred ---------------------------------------CCCcccccCCCCeeEEeeeecc------ccCCc--cceeEe
Confidence 0011112234444443322110 01111 233333
Q ss_pred ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc
Q 007229 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS 572 (612)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 572 (612)
-.+.|...+|+|||++||+.+.||.+||+|..+.+++ ......-+...|++|||||++|++|++|--|.||.+.. . +
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-r-R 365 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-R-R 365 (636)
T ss_pred ccccccceeEcCCCceEEEEecCceEEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-c-e
Confidence 4458999999999999999999999999999998876 44555667899999999999999999999999999998 6 7
Q ss_pred eeeeecccccCeeeEEEec-------------------------------------------------CceEEEccCCCe
Q 007229 573 RITIKNAHLGGVYGVAFMD-------------------------------------------------DFNVVSSGEDAC 603 (612)
Q Consensus 573 ~~~~~~~h~~~v~~~~~~~-------------------------------------------------~~~l~s~~~d~~ 603 (612)
.+..-++|.+.|..++|.+ .-.+-++|.|-.
T Consensus 366 VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTq 445 (636)
T KOG2394|consen 366 VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQ 445 (636)
T ss_pred EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccce
Confidence 8888999999999999850 013788999999
Q ss_pred EEEEEeccC
Q 007229 604 IRVWRLATE 612 (612)
Q Consensus 604 i~~w~~~~~ 612 (612)
+.+||+..+
T Consensus 446 lcLWDlteD 454 (636)
T KOG2394|consen 446 LCLWDLTED 454 (636)
T ss_pred EEEEecchh
Confidence 999999753
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-15 Score=128.35 Aligned_cols=319 Identities=11% Similarity=0.056 Sum_probs=208.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC--CeEEEEeCCCC
Q 007229 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED--FLVNFYEGPPF 180 (612)
Q Consensus 103 ~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~ 180 (612)
..+..+.|..|...|..++.++ .+++..+.-............|.-+-|+.. ++|..+.+ +.+++.+.+.+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG----YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred cceeeeeeccceeEEEccCCCc----eeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccC
Confidence 4567777999998888888887 357776654444444445566777778776 56655554 45899998888
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe--CCCc
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS--ADKS 258 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~ 258 (612)
..+..+. ...+|.++.++. +.|+++-++ .|+|||+++.+.+.++.....+...+.++++++.+.+++.-+ ..|.
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 7776654 456799999874 456666654 499999999999999865445667788888888888888754 3588
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-e
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-K 337 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 337 (612)
|.+||. .+-+.+ ..+..|.+++.+++|+ +
T Consensus 155 V~l~d~----~nl~~v----------------------------------------------~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 155 VVLFDT----INLQPV----------------------------------------------NTINAHKGPLAALAFSPD 184 (391)
T ss_pred EEEEEc----ccceee----------------------------------------------eEEEecCCceeEEEECCC
Confidence 999998 444433 3445699999999999 6
Q ss_pred cCCcEEEEEecCCc-EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcce
Q 007229 338 ISQQTILSSSYDGA-IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLD 416 (612)
Q Consensus 338 ~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 416 (612)
|.++++++..|+ ||++.+.+++....+. .+.
T Consensus 185 --G~llATASeKGTVIRVf~v~~G~kl~eFR-------------------------------RG~--------------- 216 (391)
T KOG2110|consen 185 --GTLLATASEKGTVIRVFSVPEGQKLYEFR-------------------------------RGT--------------- 216 (391)
T ss_pred --CCEEEEeccCceEEEEEEcCCccEeeeee-------------------------------CCc---------------
Confidence 999999999997 5788777665544332 110
Q ss_pred eeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCc
Q 007229 417 LSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA 496 (612)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~ 496 (612)
....|.+++|+||+++|++.+..++|++|.++........ .+
T Consensus 217 --------------------------------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~------~p 258 (391)
T KOG2110|consen 217 --------------------------------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPE------SP 258 (391)
T ss_pred --------------------------------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCC------CC
Confidence 1135899999999999999999999999999754421111 00
Q ss_pred eEEE-EEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 497 ITVI-QYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 497 i~~~-~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
-..- .+.+-.+.+.+---.+.-.+||........+........+..+.-.+...++..++.||.++.|.++-
T Consensus 259 ~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 259 TAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred CCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 0000 00000000000000112223555444333222221112333333335778899999999999999875
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-15 Score=126.10 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=167.2
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCC--ceEEEEECCCCCEEEE-eeC------cCeEEEeecCC
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY--PVTVARYSPNGEWIAS-ADV------SGSVRIWGTHN 90 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~--~v~~~~~s~d~~~las-~~~------d~~i~iwd~~~ 90 (612)
...+++|+.|..-++++.+...+||+.+.-+.......+.+ .+.-+-| -.++||. |+. ...|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 45669999999999999999999999875332221111222 2222223 2345554 332 24699999554
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCC--ceEEEEEEcCCCCEEEEEee
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHS--RRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~ 167 (612)
.++ ..+ .....+|.++.++++ +|++.-... |.||.+. .-+.++.+.... ....+++-+.....+..-|-
T Consensus 85 ~~~-i~e-l~f~~~I~~V~l~r~--riVvvl~~~----I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 85 ERC-IIE-LSFNSEIKAVKLRRD--RIVVVLENK----IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred CcE-EEE-EEeccceeeEEEcCC--eEEEEecCe----EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 442 222 345778999999876 577776664 5566665 556666665433 23333333333333233345
Q ss_pred cCCeEEEEeCCCCee--eecccccccceEEEEECCCCCeEEEEEcCCc-EEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 168 EDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDGSKLISVSSDRK-GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
.-|.|++-|+...+. ...+..|...|.|++.+-+|.++|+++..|+ |||||..+|+.+.++... .....|.+++|+
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A~iy~iaFS 235 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRADIYCIAFS 235 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-CchheEEEEEeC
Confidence 569999999877665 3568899999999999999999999999998 689999999999999643 456789999999
Q ss_pred cCCCEEEEEeCCCcEEEEEeec
Q 007229 245 PDGKKVLTVSADKSAKVWEILE 266 (612)
Q Consensus 245 ~~~~~l~~~~~dg~i~iw~~~~ 266 (612)
|+..+|++++..|+++++.+..
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999944
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-17 Score=132.21 Aligned_cols=239 Identities=17% Similarity=0.224 Sum_probs=182.6
Q ss_pred CCCCceeEEEEccCCC----EEEEecCCEEEEEeCCCCce----eeEe-----ccCCCceEEEEECC-CCCEEEEeeCcC
Q 007229 16 TERGRGILISGNPKTD----TILYCNGRSVLIRYLDKPLH----VEFY-----GEHGYPVTVARYSP-NGEWIASADVSG 81 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~----~l~~~~~~~i~i~~~~~~~~----~~~~-----~~h~~~v~~~~~s~-d~~~las~~~d~ 81 (612)
.|.-.++.+.|.||.+ -|+..++..+++|.+...+. ...+ ..+..++++..|+. |-++|.++|-|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4566788999999884 34555678999998873221 1112 24678999999998 778999999999
Q ss_pred eEEEeecCCCce--eeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecC---CceeeeeccCCceEEEEEE
Q 007229 82 SVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDS---GTTVGDFDGHSRRVLSCEF 155 (612)
Q Consensus 82 ~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~---~~~~~~~~~~~~~v~~~~~ 155 (612)
+..|||++++.. ++..+-.|..+|..++|+.++ +.+|++|.|+. ++++++.. ...+..-+....+...++|
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS---vRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS---VRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc---EEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999743 678899999999999999976 46788898884 56766653 3444444444678899999
Q ss_pred cCCCCEEEEEeecC-CeEEEEeCCC-CeeeecccccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCe------ee
Q 007229 156 KPTRPFRIATCGED-FLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEK------IG 226 (612)
Q Consensus 156 ~~~~~~~l~~~~~d-~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~------~~ 226 (612)
++.+.+++|+-..| ..|.+-|++. ...+..+++|.+.|+.++|.|. ...|.+++.|..+.+||+...-. +.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 99988778887665 5788999875 4567789999999999999995 46899999999999999975432 11
Q ss_pred eeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEE
Q 007229 227 EFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVW 262 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw 262 (612)
.+ ...+.|..+.|++ .+.+++.+.. +.+.+.
T Consensus 331 ay----~a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 331 AY----TAGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred hh----hccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 22 4567899999996 5677877654 445443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.1e-17 Score=150.61 Aligned_cols=264 Identities=18% Similarity=0.204 Sum_probs=186.5
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCce-----eeeeeeecCCCeEEEEECCC
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFV-----LKNEFKVLSGRIDDLQWSPD 113 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~s~~ 113 (612)
.+.||+++.+......-.-...|+|+.|+| +..+||.|..+|.|.+||+..+.. +......|..++..+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 699999998744444444678999999999 667888999999999999997764 22344568889999999775
Q ss_pred CCE--EEEEeCCCCeeeEEEEEecCCce---e-----eeec------cCCceEEEEEEcCCCCEEEEEeecCCeEEEEe-
Q 007229 114 GLR--IVACGDGKGKSFVRAFMWDSGTT---V-----GDFD------GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE- 176 (612)
Q Consensus 114 ~~~--l~~~~~~~~~~~i~i~~~~~~~~---~-----~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd- 176 (612)
-.- +++++.|+ .|..|++... . .... .....+++++|.+..++.++.|+++|.|.-=+
T Consensus 303 ~~~~~f~s~ssDG-----~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 303 EHNTEFFSLSSDG-----SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred CCCCceEEEecCC-----cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 544 88888887 3444442211 1 1111 22346899999999998999999999987733
Q ss_pred --CCCCe-----eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC-CCCeeeeeeccCCccccEEEEEEecCC-
Q 007229 177 --GPPFK-----FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDG- 247 (612)
Q Consensus 177 --~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~- 247 (612)
..... .+..+..|.++|+++.++|=+..++..+.|-+++||... ...++..+ ..+...+++++|||-.
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---DSSPDYVTDVAWSPTRP 454 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh---hhccceeeeeEEcCcCc
Confidence 22222 233456788999999999977666555559999999977 55566555 3566779999999954
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
..|+++..||.+.+||+... . ..+.....-+.
T Consensus 455 avF~~~d~~G~l~iWDLl~~----~--------------------------------------------~~Pv~s~~~~~ 486 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQD----D--------------------------------------------EEPVLSQKVCS 486 (555)
T ss_pred eEEEEEcCCCceehhhhhcc----c--------------------------------------------cCCcccccccc
Confidence 56778888999999999321 1 11111122222
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
...+.+.++ ..+..++.|...|.+.+|++...
T Consensus 487 ~~l~~~~~s-~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 487 PALTRVRWS-PNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccceeecC-CCCcEEEEecCCCcEEEEEcCch
Confidence 233333344 33889999999999999998643
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-16 Score=126.54 Aligned_cols=221 Identities=14% Similarity=0.178 Sum_probs=150.6
Q ss_pred CcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 350 GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 350 g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
..+.+||-....+..... ...+|.++.+..+.+++.- +++|.+|........ ....+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~-l~~~e-------------------- 131 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKL-LHVIE-------------------- 131 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhh-eeeee--------------------
Confidence 468999955555555444 8899999999888877765 457888887644321 00011
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEE-EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcE
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV-GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSM 508 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (612)
+...+....+++-..+..+||. |..-|.|+|-|+...+.-....+.+|.+.|.|++++.+|.+
T Consensus 132 ----------------t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~ 195 (346)
T KOG2111|consen 132 ----------------TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTL 195 (346)
T ss_pred ----------------cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccE
Confidence 1111122333333334445554 44568999999987665345778999999999999999999
Q ss_pred EEEEcCCCe-EEEEecCCcceeeecccc-cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCc-ce------------
Q 007229 509 FASADGNRE-AIVWDRVSKEVKLNNMLF-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS-SR------------ 573 (612)
Q Consensus 509 l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~------------ 573 (612)
+|+++..|+ |||||..+++.+.+.-.| ....|.+++|||+..+||++|+.|+++|+.++.... +.
T Consensus 196 vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~l 275 (346)
T KOG2111|consen 196 VATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVL 275 (346)
T ss_pred EEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccccccc
Confidence 999999987 799999999988654443 345799999999999999999999999999876210 11
Q ss_pred ---------eeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 574 ---------ITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 574 ---------~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
+..+.-..+...-++|- +.+.++..+.||.-+-+.+
T Consensus 276 pky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 276 PKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred chhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 01111223344556666 4466777777876554433
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-17 Score=155.87 Aligned_cols=341 Identities=13% Similarity=0.101 Sum_probs=222.5
Q ss_pred EeCCCCceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCce----eee--eeeecCCCeEEEEECCCCCE
Q 007229 44 RYLDKPLHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFV----LKN--EFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 44 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~----~~~--~~~~~~~~i~~~~~s~~~~~ 116 (612)
|+++ |..+..+..|+..|..++.+++. .+++|||.||+|++||...-.. ... ++......+.++.+.+.+..
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 5544 56777788999999999998865 9999999999999999874321 222 33334678999999999999
Q ss_pred EEEEeCCCCeeeEEEEEecC--Cc-----eeee--eccCCceEEEEEEcCCCCE-EEEEeecCCeEEEEeCCCCeeeecc
Q 007229 117 IVACGDGKGKSFVRAFMWDS--GT-----TVGD--FDGHSRRVLSCEFKPTRPF-RIATCGEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~--~~-----~~~~--~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~ 186 (612)
+|+++.|+ .+++...+. .+ ..+. .......|..-+|....+. +++.+..-+.|..||........++
T Consensus 1113 ~Av~t~DG---~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1113 FAVSTKDG---SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred EEEEcCCC---eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 99999988 455555553 11 1111 2222334444455554443 7888888899999999887766664
Q ss_pred c--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC---CCEEEEEe--CCCcE
Q 007229 187 R--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD---GKKVLTVS--ADKSA 259 (612)
Q Consensus 187 ~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~--~dg~i 259 (612)
+ ...+.|++++.+|.+++++.|+..|.+.+||++-+.++.... .++..++..+..+|- ....++++ ..+.|
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~--~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE--HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc--CcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 4 345789999999999999999999999999999998888773 356678888887763 24555554 46789
Q ss_pred EEEEeecCCCCCeeEeeeeccCc----------------cccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 260 KVWEILEDGSGGRVIKTFASSTS----------------NAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
.+|++ .++.....+-.... ........++...+..+++|+.+..|+.||...+.......
T Consensus 1268 s~wn~----~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~ 1343 (1431)
T KOG1240|consen 1268 STWNM----ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAV 1343 (1431)
T ss_pred eeeec----ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccc
Confidence 99999 77665555544311 11112223333347889999999999999977765543333
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEE-E-----EcCCc---ee-----eeeceecccceEEEEe---eccEEEEe
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIK-W-----IRGVG---YS-----SKLEKKYDARIKCLAA---VEEVIFTA 386 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~-w-----d~~~~---~~-----~~~~~~~~~~i~~~~~---~~~~l~~~ 386 (612)
.+..........+. +..++.++.--...+ . +.... +. ......|..+|+.++. +..+++++
T Consensus 1344 ~~~s~~~~~~~~s~--~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~ 1421 (1431)
T KOG1240|consen 1344 PGPSTSYSTNSESY--DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSS 1421 (1431)
T ss_pred cCccccccccchhc--cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEe
Confidence 33322222222221 222222221100000 0 00000 00 0011127788888888 44589999
Q ss_pred cCCCeEEEEe
Q 007229 387 GFDNKVWRVP 396 (612)
Q Consensus 387 ~~~~~i~~~~ 396 (612)
+.||.|++|.
T Consensus 1422 s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1422 SRDGVIKIWK 1431 (1431)
T ss_pred cCCCeeeecC
Confidence 9999999993
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=150.80 Aligned_cols=209 Identities=19% Similarity=0.270 Sum_probs=160.6
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeee
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSF 128 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~ 128 (612)
+.+.|.||++.|+|++|+.||.+||+||+|-.+.|||....+.+...-.+|...|.++.|-| +.+.++++..|. .
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk---~ 118 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK---L 118 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc---e
Confidence 34568899999999999999999999999999999999988877777789999999999999 456677777776 6
Q ss_pred EEEEEecC----------CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-------e---cccc
Q 007229 129 VRAFMWDS----------GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-------L---SHRE 188 (612)
Q Consensus 129 i~i~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-------~---~~~~ 188 (612)
|++++.+. .+..+.+..|...|..++-.|+++..+.++++||+|+-+|++....- . .+..
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 78888873 23556678899999999999999889999999999999998763211 1 1111
Q ss_pred cccceEEEEECCCC-CeEEEEEcCCcEEEEecCC--------CC----------eeeeeeccCCcc-----------ccE
Q 007229 189 HSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKS--------GE----------KIGEFSSEDGHH-----------GSI 238 (612)
Q Consensus 189 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~--------~~----------~~~~~~~~~~~~-----------~~v 238 (612)
.--...|+.++|.. .+|++|+.|...++||.+. +. ++.-+.. +|- ..+
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p--~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP--GHLKNSQGNLDRYITCC 276 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC--ccccCcccccccceeee
Confidence 22356889999954 5889999999999999421 11 1111110 111 125
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 239 YAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+-++|+|+|.-|++.-....|.++|+
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEee
Confidence 67789999987777666668999999
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-17 Score=152.06 Aligned_cols=217 Identities=13% Similarity=0.196 Sum_probs=153.1
Q ss_pred CCceeEEEEccCCCEEEEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcC--eEEEeecCC
Q 007229 18 RGRGILISGNPKTDTILYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSG--SVRIWGTHN 90 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~--~i~iwd~~~ 90 (612)
.+.+.+.+|||||+.|++.+ +..|++|++.+++... +....+.+..++|||||+.|+.. +.+| .|.+||+.+
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 44688999999999999864 3589999999886544 33344445678999999988865 4444 588999988
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
++ +. .+..+...+....|+|||+.|+..++..+. .++|.++ .+.....+..+........|+|+|+++++++..+
T Consensus 277 g~-~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~--~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 277 GQ-IR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGR--PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred CC-EE-EccCCCCCcCceEECCCCCEEEEEeCCCCC--ceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 76 33 344455677899999999999988875432 4577666 2233445544555567789999999754544443
Q ss_pred --CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCc---EEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 170 --FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK---GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 170 --~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
..|.+||+.+++... +... .......|+|||++|+.++.++. +.++++ +|.....+. .+.+.+...+|+
T Consensus 353 g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~---~~~~~~~~p~Ws 426 (429)
T PRK03629 353 GQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP---ATDGQVKFPAWS 426 (429)
T ss_pred CCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc---cCCCCcCCcccC
Confidence 358889998876443 3221 22346789999999999888765 667776 455555552 567778888888
Q ss_pred c
Q 007229 245 P 245 (612)
Q Consensus 245 ~ 245 (612)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 6
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.8e-15 Score=133.75 Aligned_cols=531 Identities=11% Similarity=0.094 Sum_probs=313.6
Q ss_pred ceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc---------------eeeEeccCCCceEEE
Q 007229 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL---------------HVEFYGEHGYPVTVA 65 (612)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~---------------~~~~~~~h~~~v~~~ 65 (612)
|.+.+++-++-+. .....|++|+....+||+|+ +|.+.|..+.+.. .-+++.||.+.|.-+
T Consensus 1 Mfvylskki~iPn---nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vv 77 (1189)
T KOG2041|consen 1 MFVYLSKKIGIPN---NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVV 77 (1189)
T ss_pred CceEeecccCCCC---CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEE
Confidence 3444444443333 45788999999999999998 8988888765321 234588999999999
Q ss_pred EECCCCCEEEEeeCcCeEEEeecCCCceeeeee-eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeec
Q 007229 66 RYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF-KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD 144 (612)
Q Consensus 66 ~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~ 144 (612)
.|+.+.+.|-|+..+|.|.||-+-.+.-..... ...+.-|.+++|..||+.+..+-.|+.. .+-..+ |..+..-.
T Consensus 78 TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav---IVGsvd-GNRIwgKe 153 (1189)
T KOG2041|consen 78 TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV---IVGSVD-GNRIWGKE 153 (1189)
T ss_pred EeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE---EEEeec-cceecchh
Confidence 999999999999999999999998776422222 2345678999999999999988888742 222222 22222211
Q ss_pred cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-------ec----ccccccceEEEEEC--------CCCCeE
Q 007229 145 GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-------LS----HREHSNFVNCIRFS--------PDGSKL 205 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-------~~----~~~~~~~v~~~~~s--------~~~~~l 205 (612)
-.......+.|++|.+ +++.+-..|.+.++|.+..-.. .. +......|..+.|. ||...|
T Consensus 154 Lkg~~l~hv~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 154 LKGQLLAHVLWSEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred cchheccceeecccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE
Confidence 1122334788999998 5777888899999985432110 00 11112234555553 477789
Q ss_pred EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC---------CcEEEEEeecCCCCCeeEee
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD---------KSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~ 276 (612)
+.+-..|.+.+-.-++......+ ...-.+....|+++|..|++++.+ +.|.+|.. -|..+.+
T Consensus 233 avcy~nGr~QiMR~eND~~Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-----~G~i~gt 303 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDPEPVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-----YGHIVGT 303 (1189)
T ss_pred EEEEcCceehhhhhcCCCCCeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-----chhheEE
Confidence 99999999998876665555555 344678899999999999998864 35666663 5666666
Q ss_pred eeccCccccceeeeeeeccC-CEEEEEEcCCEEEEEEcCCCCC-------CceeecCcccceeEEEEEec--C-------
Q 007229 277 FASSTSNAVEDMLVGCLWQN-DHLITVSLGGIISIFSASNLDK-------APLSFSGHVKNVSTLTALKI--S------- 339 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~--~------- 339 (612)
++.+. ..+.++.|.+ +.-++...++.|.+-+++...+ .+...+....+-.++.|-+. +
T Consensus 304 lkvpg-----~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V 378 (1189)
T KOG2041|consen 304 LKVPG-----SCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTV 378 (1189)
T ss_pred EecCC-----ceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhh
Confidence 66553 4566666663 3334444455555544433211 11111222222222222210 0
Q ss_pred -----------CcEEEEEecCCcEEEEEcC-Cceeeeece-------ecccceEEEE-----eeccEEEEecCCCeEEEE
Q 007229 340 -----------QQTILSSSYDGAIIKWIRG-VGYSSKLEK-------KYDARIKCLA-----AVEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 340 -----------~~~l~~~~~dg~i~~wd~~-~~~~~~~~~-------~~~~~i~~~~-----~~~~~l~~~~~~~~i~~~ 395 (612)
.-.++.-..+|.+.-++.- +........ ..+.....+. .++-.++.++.+ .+.+|
T Consensus 379 ~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iW 457 (1189)
T KOG2041|consen 379 THFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIW 457 (1189)
T ss_pred cceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEE
Confidence 2233333344444433211 111000000 0111222222 244555555554 55666
Q ss_pred ecCCCCCCcccee-ccCCC-cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCe
Q 007229 396 PLCEGECGDAEHI-DVGSQ-PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGK 473 (612)
Q Consensus 396 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 473 (612)
.....+....... ....+ .....-.|.+. .++..-+. .........+|.+++.+ .++|.++-..|.
T Consensus 458 hy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga-------~d~~l~ys---~kt~~G~~DpICAl~~s--dk~l~vareSG~ 525 (1189)
T KOG2041|consen 458 HYVLPKFNSVLAGVKIRKEGRFHGDDTPEGA-------QDRTLEYS---TKTLLGSKDPICALCIS--DKFLMVARESGG 525 (1189)
T ss_pred EEeccchhhhhhhhhhcccccccCCCCccch-------hhceeecc---ceeeccCCCcceeeeec--ceEEEEEeccCc
Confidence 6544332110000 00000 00111112110 01111110 11112245677777776 578999999999
Q ss_pred EEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC---CcceeeecccccccceeEEEecCCCc
Q 007229 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV---SKEVKLNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 474 v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~i~~~~~s~~~~ 550 (612)
|+-|.+.+..+..... -+..|.+++++-+...+|.-..-|.+.+.|+. ++..+..........|..+.|..|..
T Consensus 526 I~rySl~nv~l~n~y~---~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp 602 (1189)
T KOG2041|consen 526 IYRYSLNNVVLTNSYP---VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNP 602 (1189)
T ss_pred eEEEEecceeeeeccc---cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCc
Confidence 9999998876632222 34579999999999999999888999998886 34443334444567899999999888
Q ss_pred EEEEeecCcEEEEEEccCCC
Q 007229 551 MVATGSIDTCVIIYEIGKPA 570 (612)
Q Consensus 551 ~l~s~~~d~~i~iwd~~~~~ 570 (612)
.|..--+...++|++-..+.
T Consensus 603 ~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 603 NLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred hHHhhhhhceEEEecCcCcc
Confidence 77666666678888765533
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-12 Score=130.36 Aligned_cols=451 Identities=13% Similarity=0.148 Sum_probs=265.8
Q ss_pred CceeEEEEccCCCEEEEecC-----CEEEEEeCCCCc---eeeEec-----cCCCceEEEEECCCCCEEEEeeCcCeEEE
Q 007229 19 GRGILISGNPKTDTILYCNG-----RSVLIRYLDKPL---HVEFYG-----EHGYPVTVARYSPNGEWIASADVSGSVRI 85 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~-----~~i~i~~~~~~~---~~~~~~-----~h~~~v~~~~~s~d~~~las~~~d~~i~i 85 (612)
..+...+|.++...+.+..+ ..|.+....... .+..+. .....|.++.|-++...|+.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 36778888887776655542 234444333222 222222 24578999999999999999999999999
Q ss_pred e----ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-----------C----------Ccee
Q 007229 86 W----GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-----------S----------GTTV 140 (612)
Q Consensus 86 w----d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-----------~----------~~~~ 140 (612)
. +..+.. ......-..+|.+++||||+..|+.++.++.... .-.+|+ - |++-
T Consensus 102 ~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~-mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDEDE--IEIVGSVDSGILAASWSPDEELLALVTGEGNLLL-MTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEE-EeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 555553 3345566789999999999999999887763211 111122 0 1111
Q ss_pred eeecc------------------------CCceEEEEEEcCCCCEEEEEeec------CCeEEEEeCCCCeeeecccccc
Q 007229 141 GDFDG------------------------HSRRVLSCEFKPTRPFRIATCGE------DFLVNFYEGPPFKFKLSHREHS 190 (612)
Q Consensus 141 ~~~~~------------------------~~~~v~~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~ 190 (612)
..|.| +.+.-..++|-.||.| +|+.+. -..+|+|+-+ |.+..+-..-.
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y-FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~ 256 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY-FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD 256 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE-EEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence 11211 2234467889999997 555543 3689999965 66555444333
Q ss_pred cceEEEEECCCCCeEEEEEc---CCcEEEEecCCCCeeeeeeccC-CccccEEEEEEecCCCEEEEEeCCCcEEEEEeec
Q 007229 191 NFVNCIRFSPDGSKLISVSS---DRKGLIYDGKSGEKIGEFSSED-GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILE 266 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~ 266 (612)
+--.+++|-|.|+++|+... ...|.+|. ++|-....|.... .....|..+.|++|+..|+....|. |++|..
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~-- 332 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR-- 332 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe--
Confidence 33457899999999988765 35677787 6777777765432 4567899999999999999987664 999998
Q ss_pred CCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEE
Q 007229 267 DGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346 (612)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 346 (612)
.+..--...... + .....+..+.|++.+...|...
T Consensus 333 --~NYHWYLKqei~------------------------------------------~-~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 333 --SNYHWYLKQEIR------------------------------------------F-SSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred --eCCEEEEEEEEE------------------------------------------c-cCCCCCCceEECCCCCCEEEEE
Confidence 444321111100 0 0112223366665446667777
Q ss_pred ecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcE
Q 007229 347 SYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPEL 426 (612)
Q Consensus 347 ~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (612)
+.+|.+..++..-.............-.....+|+ ++.+-++......
T Consensus 368 t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~---------~lllTpf~~a~VP----------------------- 415 (928)
T PF04762_consen 368 TSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGN---------KLLLTPFRRAVVP----------------------- 415 (928)
T ss_pred ecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCC---------eEEEecccccCCC-----------------------
Confidence 66676665543211111000000000001111221 2222222221111
Q ss_pred EEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccc------cceee----------
Q 007229 427 ALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT------EEMVL---------- 490 (612)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~------~~~~~---------- 490 (612)
+.-....+..+.+|.+++|++++..+++-..||.+.+|........ ....+
T Consensus 416 -------------PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (928)
T PF04762_consen 416 -------------PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDS 482 (928)
T ss_pred -------------chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccc
Confidence 1112234456678999999999988999999999999986443211 00111
Q ss_pred ccccCceEEEEEcCCCcEEEEEcCC---CeEEEEecCCcce--eeecccccccceeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 491 EKHRGAITVIQYSPDVSMFASADGN---REAIVWDRVSKEV--KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
......+..++|..+...++....+ ..+.++++...+. .......-.+.+..+...++...++.-..||.+...+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~ 562 (928)
T PF04762_consen 483 ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLS 562 (928)
T ss_pred ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEee
Confidence 1123457888888887777766654 6788888743321 1122222345555666666655466667788888665
Q ss_pred ccC
Q 007229 566 IGK 568 (612)
Q Consensus 566 ~~~ 568 (612)
...
T Consensus 563 ~~~ 565 (928)
T PF04762_consen 563 SDG 565 (928)
T ss_pred cCC
Confidence 544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=131.45 Aligned_cols=201 Identities=15% Similarity=0.216 Sum_probs=164.7
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
--..+|+|.+|++|+..+|.+-....|.||....... ...++..|...|+.+.|+|....|++++.+++. .+|..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna---yVw~~ 84 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA---YVWTQ 84 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc---ccccc
Confidence 3457999999999999999999999999999987762 667888999999999999999999999999853 44444
Q ss_pred -c--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee----ecccccccceEEEEECCCCCeEEE
Q 007229 135 -D--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK----LSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 135 -~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
+ +-++...+..+....+++.|+|.++ .+++|+....|.+|-.+..+-= +.-+.+...|.+++|+|++-+|++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 2 3456667788999999999999998 6999999999999976654321 123456778999999999999999
Q ss_pred EEcCCcEEEEecC-----C-------------CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 208 VSSDRKGLIYDGK-----S-------------GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 208 ~~~dg~i~vwd~~-----~-------------~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+.|+..+|+..- + |+.+.++ ....+.+..+.|+|+|..|+-.+.|..+.+-|.
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~---~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA---SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh---ccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 9999999999742 1 1122222 145678999999999999999999999999887
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-16 Score=128.57 Aligned_cols=241 Identities=13% Similarity=0.114 Sum_probs=168.9
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec-cCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~ 93 (612)
....+..++|++.-.-+|++. |..|++||-.. +....++ .....|+|++|-|. ++-||.|+.. -|.+|.......
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 345677899999666666666 78999999877 4444444 34678999999995 4678888765 599998764321
Q ss_pred eee-------------eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC
Q 007229 94 LKN-------------EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 94 ~~~-------------~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (612)
... ...+| ..|++|+|.+||..|++++-+.. .|.||+.+++..+.......+.+.-+.||||+.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss--si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS--SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc--eEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 111 11222 57999999999999999988775 478888888887776666778899999999999
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee--------------
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG-------------- 226 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-------------- 226 (612)
+ +..+.-|+..++|+...........-..+.|....|+|+|++|+.++. |.-++|.+.-.+.-.
T Consensus 252 ~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 252 V-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred E-EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence 5 888899999999965443322222233458999999999998776554 445555543211110
Q ss_pred -eee------ccCCccccEEEEEEecCCCEEEEEeCCC--------cEEEEEe
Q 007229 227 -EFS------SEDGHHGSIYAVSWSPDGKKVLTVSADK--------SAKVWEI 264 (612)
Q Consensus 227 -~~~------~~~~~~~~v~~i~~~~~~~~l~~~~~dg--------~i~iw~~ 264 (612)
.+. ...-..+++.+++|.|.|.+|++.-..+ .|.+||.
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdt 382 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDT 382 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcc
Confidence 110 0112356788999999999999876543 3566776
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-14 Score=134.47 Aligned_cols=151 Identities=19% Similarity=0.181 Sum_probs=126.6
Q ss_pred eEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee
Q 007229 22 ILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~ 100 (612)
.-+.++++.-+++++. -+.|++|+...-.....+.||++.|..+.++.||+++|+.|+|.++++|++++.+.+.....+
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence 3455677777888887 699999998743333358999999999999999999999999999999999999877667889
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC-ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC
Q 007229 101 LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS-RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 101 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
|...+..++|.|+ ++++++.+- ..++|.++ ++.+..+.+|. +.+..++..++.. .++|++.|+.+++|++..
T Consensus 217 HsaRvw~~~~~~n--~i~t~gedc---tcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 217 HSARVWACCFLPN--RIITVGEDC---TCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceeEEEEeccc--eeEEeccce---EEEEEecc-cceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 9999999999999 999999997 45666554 44445777776 5788999988887 699999999999999654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-13 Score=117.50 Aligned_cols=413 Identities=12% Similarity=0.135 Sum_probs=236.3
Q ss_pred CCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-------eCcCeEEEeecCCCceeeeeeeecC
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-------DVSGSVRIWGTHNGFVLKNEFKVLS 102 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-------~~d~~i~iwd~~~~~~~~~~~~~~~ 102 (612)
|..|++.+...+-.+++.+++.++ +..|-+-|+...|+|||+.+|.. ...+.+.+.+.++++....+.. .
T Consensus 50 GD~IiFt~~DdlWe~slk~g~~~r-itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyf--G 126 (668)
T COG4946 50 GDRIIFTCCDDLWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYF--G 126 (668)
T ss_pred CcEEEEEechHHHHhhhccCCeeE-EecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEe--c
Confidence 666776666666666788888777 66789999999999999998872 2445688888899984333333 3
Q ss_pred CCeE-EEEECCCCCEEEEEeCCCCee-eEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE-------
Q 007229 103 GRID-DLQWSPDGLRIVACGDGKGKS-FVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV------- 172 (612)
Q Consensus 103 ~~i~-~~~~s~~~~~l~~~~~~~~~~-~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i------- 172 (612)
...+ -.-|.|||+.+++........ .-.++..+ .|.....+ .-++.+.+.+-. | +++.|-.--.+
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv~~d-g--~ivigRntydLP~WK~Yk 201 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIVIKD-G--IIVIGRNTYDLPHWKGYK 201 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEEEeC-C--EEEEccCcccCccccccc
Confidence 3333 456999999998876554221 11222222 22212222 223444444432 2 24443211111
Q ss_pred -----EEEeCC----CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC-CCCeeeeeeccCCccccEEEEE
Q 007229 173 -----NFYEGP----PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 173 -----~~wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
++|--. +.+....+.+| |.+-..-.+.-+++ ...+|.=.+|... .|+-+.... .-..-.+-.
T Consensus 202 GGtrGklWis~d~g~tFeK~vdl~~~---vS~PmIV~~RvYFl-sD~eG~GnlYSvdldGkDlrrHT----nFtdYY~R~ 273 (668)
T COG4946 202 GGTRGKLWISSDGGKTFEKFVDLDGN---VSSPMIVGERVYFL-SDHEGVGNLYSVDLDGKDLRRHT----NFTDYYPRN 273 (668)
T ss_pred CCccceEEEEecCCcceeeeeecCCC---cCCceEEcceEEEE-ecccCccceEEeccCCchhhhcC----Cchhccccc
Confidence 233211 22222233333 33322222221222 2334444444332 233332221 111122223
Q ss_pred EecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc--Cccccceeee--------eeeccCCEEEEEEcCCEEEEEE
Q 007229 243 WSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS--TSNAVEDMLV--------GCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
.+.||+.++.. ..|.|.+||. ++ +.+..+... .......... ..+..++..++.-+.|...+.+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP----~t-d~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~ 347 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDP----ET-DSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR 347 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCC----Cc-CcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence 46688887764 5688999997 33 223333222 1101111110 0112244444445556666655
Q ss_pred cCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCC-cEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecC
Q 007229 313 ASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDG-AIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGF 388 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~ 388 (612)
..... ...-+|...|.-..+. + ++-++.|..|| .+-++|.++++...... .-+.|.++.. +++.++.+..
T Consensus 348 ~~~~~---~iqv~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 348 PWDGY---SIQVGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred CCCCe---eEEcCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC
Confidence 33221 2223466667666666 4 55888899998 89999999998777665 5667777777 6778888888
Q ss_pred CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEE
Q 007229 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVG 468 (612)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 468 (612)
...+++.|+.++... +.......-|+.++|+|+++++|.+
T Consensus 422 r~el~vididngnv~----------------------------------------~idkS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 422 RFELWVIDIDNGNVR----------------------------------------LIDKSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred ceEEEEEEecCCCee----------------------------------------EecccccceeEEEEEcCCceeEEEe
Confidence 889999999887643 1111123458999999999999998
Q ss_pred ecCC----eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc
Q 007229 469 GQNG----KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD 513 (612)
Q Consensus 469 ~~dg----~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (612)
.-+| .|++||+.+++.....+..+ -=.+-+|.||+++|..-+
T Consensus 462 fP~gy~tq~Iklydm~~~Kiy~vTT~ta---~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGGKIYDVTTPTA---YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcceeeeeEEEEecCCCeEEEecCCcc---cccCcccCCCCcEEEEEe
Confidence 7776 69999999988633333333 334568899999886554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-15 Score=145.02 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=151.2
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC---cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV---SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
.|.++|.+... .+.+..|...+.+.+|||||+.||..+. +..|.+||+.+++. ..+..+.+.+...+|+|||+.
T Consensus 183 ~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCE
Confidence 88899986554 4557788899999999999999998763 46899999998863 345566778889999999999
Q ss_pred EEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeecccccccce
Q 007229 117 IVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHSNFV 193 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~v 193 (612)
|+......+. ..||.++ .+.....+..+........|+|||+.++++...+| .|.++|+..++... +..+...+
T Consensus 260 la~~~~~~g~--~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~ 336 (435)
T PRK05137 260 VVMSLSQGGN--TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRY 336 (435)
T ss_pred EEEEEecCCC--ceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcc
Confidence 8765443322 3566666 23345667767777788999999996444443443 68888887665433 33334556
Q ss_pred EEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC------cEEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK------SAKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg------~i~iw~~ 264 (612)
....|+|||++|+....+ ..|.+||+..+.. ..+ .....+....|+|||+.|+..+.++ .+.++++
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~l----t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RIL----TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eec----cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 778999999999887654 3588889765543 333 1223467889999999988765532 4555665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=148.97 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=147.1
Q ss_pred CCCceeEEEEccCCCEEEEecC----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeec--C
Q 007229 17 ERGRGILISGNPKTDTILYCNG----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGT--H 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~--~ 89 (612)
+.+.+.+.+|||||+.|++.+. ..|++||+.+++... +....+.+.+.+|||||+.|+ +.+.+|...||.+ .
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 4567889999999999999862 479999999887654 444556677999999999887 4677887777665 4
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
++. ...+..+........|+|||++|+..++..+. ..+|..+ .+.....+..+.......+|+|+|++ ++..+.
T Consensus 273 ~~~--~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~--~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~-Ia~~s~ 347 (427)
T PRK02889 273 GSG--LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA--PQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKL-LAYISR 347 (427)
T ss_pred CCC--cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC--cEEEEEECCCCceEEEecCCCCcCceEECCCCCE-EEEEEc
Confidence 443 23455555566778999999999988765432 4566665 22223333223334456789999996 544443
Q ss_pred C-C--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 169 D-F--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 169 d-~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
+ + .|.+||+.+++......+ .......|+|||++|+.++.++ .+.+.++ ++.....+. .+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~---~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS---VQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee---cCCCCCCCCc
Confidence 3 3 699999988775543222 2346789999999998877654 2555565 455555452 3455666777
Q ss_pred Eec
Q 007229 243 WSP 245 (612)
Q Consensus 243 ~~~ 245 (612)
|+|
T Consensus 422 wsp 424 (427)
T PRK02889 422 WGP 424 (427)
T ss_pred cCC
Confidence 776
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-16 Score=137.39 Aligned_cols=218 Identities=15% Similarity=0.245 Sum_probs=159.0
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeE----eccCCCceEEEEE-----CCCCCEEEEeeCcCeEEEeecCC
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEF----YGEHGYPVTVARY-----SPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~----~~~h~~~v~~~~~-----s~d~~~las~~~d~~i~iwd~~~ 90 (612)
.+....++-.|++|.+.-+..+++|+...+..... ..--...-+|=+| .|++--|..|-.-|.|.+.|...
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 45567778889999999999999999885433221 1111122334444 45666788888888999998876
Q ss_pred Ccee---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec------------------------------CC
Q 007229 91 GFVL---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD------------------------------SG 137 (612)
Q Consensus 91 ~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~------------------------------~~ 137 (612)
.+.. .......+..++++.|-|.+..++.+....+. ++.++ +.
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGn----lyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r 280 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGN----LYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR 280 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCc----eEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence 4321 11122344689999999966544444332221 33221 01
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
.++..+..-.+.|...+|+|||++ ||+.+.||.+||+|..+.+++..++..-+...|++|||||+|+++|++|-.|.||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 122233334457888999999995 9999999999999999999888888888899999999999999999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
.+..++.+..- .+|...|..++|.|
T Consensus 360 Sf~erRVVARG---qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARG---QGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEec---cccccceeeEeecc
Confidence 99999988877 49999999999987
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-16 Score=148.15 Aligned_cols=217 Identities=17% Similarity=0.189 Sum_probs=150.5
Q ss_pred CCCceeEEEEccCCCEEEEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCe--EEEeecC
Q 007229 17 ERGRGILISGNPKTDTILYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGS--VRIWGTH 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~--i~iwd~~ 89 (612)
+.+.+.+.+|||||+.|++.+ +..|++||+.+++... +..+.+.+.+.+|||||+.|+ +.+.++. |.+||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 456789999999999999986 3589999999887644 666777888999999999876 4455554 7777888
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
+++ + ..+..+........|+|||++|+..++..+. ..+|.++ .+.....+..+...+....|+|+|++++++...
T Consensus 279 ~~~-~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~--~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 279 SGT-T-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGS--PQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred CCc-e-EEccCCCCccCceeEcCCCCEEEEEECCCCC--CeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 875 3 3455566667789999999999988865432 2455555 333344555455567778999999964444432
Q ss_pred C--CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC------CcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 169 D--FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD------RKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 169 d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
. ..|.+||+..+... .+. ....+....|+|||+.|+..+.+ ..+.++|+..+.. ..+ .....+..
T Consensus 355 ~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l----~~~~~~~~ 427 (435)
T PRK05137 355 GGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REV----PTPGDASD 427 (435)
T ss_pred CCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEc----cCCCCccC
Confidence 2 36888887655432 232 22346788999999998776543 2577888765544 444 22334556
Q ss_pred EEEec
Q 007229 241 VSWSP 245 (612)
Q Consensus 241 i~~~~ 245 (612)
.+|+|
T Consensus 428 p~Wsp 432 (435)
T PRK05137 428 PAWSP 432 (435)
T ss_pred cccCC
Confidence 67765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-15 Score=144.12 Aligned_cols=216 Identities=15% Similarity=0.115 Sum_probs=146.1
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC---cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV---SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.+||..... .+.+..|...+.+.+|+|||+.||..+. +..|.+||+.+++. ..+....+.....+|+|||+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 378999987544 4446678889999999999999998763 34699999988763 23444455566889999999
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe--EEEEeCCCCeeeecccccccce
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL--VNFYEGPPFKFKLSHREHSNFV 193 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~~~v 193 (612)
.|+......+...+.+++.++++ ...+..+.......+|+|||++++++...+|. |.++|+.+++... +..+....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~ 338 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYN 338 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCc
Confidence 88765432222123344444544 45566666666788999999965555545554 6666776665432 22223344
Q ss_pred EEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC---CcEEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD---KSAKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~iw~~ 264 (612)
...+|+|||++++..+.++ .|.+||+.+++.. .+ .+........|+|||++++..+.+ +.|.++++
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L----t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL----TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-EC----CCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 5789999999998776543 5999999887755 33 222234567899999988877653 34556665
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-15 Score=143.13 Aligned_cols=216 Identities=15% Similarity=0.077 Sum_probs=145.6
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee---CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD---VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.++|.+...... +..+...+.+.+|||||+.||..+ .+..|.+||+.+++. ..+....+.+...+|+|||+
T Consensus 179 ~~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 379999998665544 556778899999999999998754 345799999988763 23333444566789999999
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE--eCCCCeeeecccccccce
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHREHSNFV 193 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w--d~~~~~~~~~~~~~~~~v 193 (612)
.|+......+...+.+++.++++. ..+..+...+....|+|||+.++++...++...+| |+.+++.. .+..+....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~ 333 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQN 333 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 999775433221233444445544 44555556778899999999644454444544444 66666443 333334446
Q ss_pred EEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc---EEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS---AKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~---i~iw~~ 264 (612)
....|+|||++|+..+.+ ..|.+||+.+++.. .+. .........|+|||++|+..+.++. +.++++
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt----~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT----DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC----CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 678999999999877654 35889999887644 331 1122346789999999999988765 455554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-16 Score=146.75 Aligned_cols=217 Identities=13% Similarity=0.194 Sum_probs=149.6
Q ss_pred CCCceeEEEEccCCCEEEEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcC--eEEEeecC
Q 007229 17 ERGRGILISGNPKTDTILYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSG--SVRIWGTH 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~--~i~iwd~~ 89 (612)
+.+.+.+.+|||||+.|++.+ ...|++||+.+++... +..+.+...+++|||||+.|+ +.+.+| .|.+||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 345688999999999999986 2479999999887654 444555666899999999876 445555 59999999
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
+++ + ..+..+.......+|+|||++|+..++..+. ..+|.++ +++ ...+..+.......+|+|+|++++++..
T Consensus 281 ~g~-~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~--~~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 281 SRQ-L-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR--PQIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred CCC-e-EECccCCCCccceEECCCCCEEEEEECCCCC--ceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEC
Confidence 886 3 3455565566788999999999988765432 3466655 443 3333334444557899999996444443
Q ss_pred cCC--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 168 EDF--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 168 ~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.+.++++. +.....+. .+.+.+...+
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~---~~~g~~~~p~ 429 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV---SADGEVREPA 429 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc---cCCCCCCCCc
Confidence 333 6999999887755 332 22234567999999988877653 457788874 44444442 3445566677
Q ss_pred Eec
Q 007229 243 WSP 245 (612)
Q Consensus 243 ~~~ 245 (612)
|+|
T Consensus 430 wsp 432 (433)
T PRK04922 430 WSP 432 (433)
T ss_pred cCC
Confidence 765
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=144.10 Aligned_cols=231 Identities=16% Similarity=0.242 Sum_probs=198.1
Q ss_pred CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CC
Q 007229 59 GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SG 137 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~ 137 (612)
...-..+.++.+|+.|+.|+.-|.|..+|..+.+ +...+. -...|..+.|..+.+++|++-... ++.+| .|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y------~yvYD~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-LHFEIN-VMETVRDVTFLHNEQFFAVAQKKY------VYVYDNNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccce-eeeeee-hhhhhhhhhhhcchHHHHhhhhce------EEEecCCC
Confidence 4455789999999999999999999999999987 544443 345789999999999999887664 77777 78
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
..++.++.| ..|..+.|-|..- +|++++..|.++--|+.+|+.+..+....+.+..|+-+|-+..+-+|...|+|.+|
T Consensus 201 tElHClk~~-~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred cEEeehhhc-Cchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 889888866 4689999999874 89999999999999999999999998888999999999988889999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
.....+++..+ -.|.++|.++++.++|+|++|.+.|..++|||+ .....+.++..+. ....+.++..
T Consensus 279 SP~skePLvKi---LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl----R~~~ql~t~~tp~------~a~~ls~Sqk 345 (545)
T KOG1272|consen 279 SPNSKEPLVKI---LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL----RNFYQLHTYRTPH------PASNLSLSQK 345 (545)
T ss_pred CCCCcchHHHH---HhcCCCcceEEECCCCcEEeecccccceeEeee----ccccccceeecCC------Cccccccccc
Confidence 99999988877 389999999999999999999999999999999 6666666555432 3445666788
Q ss_pred EEEEEEcCCEEEEEE
Q 007229 298 HLITVSLGGIISIFS 312 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~ 312 (612)
.+++.+....+.+|.
T Consensus 346 glLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 346 GLLALSYGDHVQIWK 360 (545)
T ss_pred cceeeecCCeeeeeh
Confidence 888999999999996
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=143.89 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=144.1
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.++|.+. ...+.+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++. ..+....+.+...+|+|||+
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 4788888754 4444466788899999999999999987643 4599999998863 23444556677899999999
Q ss_pred EEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe--CCCCeeeecccccccc
Q 007229 116 RIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE--GPPFKFKLSHREHSNF 192 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd--~~~~~~~~~~~~~~~~ 192 (612)
.|+......+ ...+|.++ .+.....+..+........|+|||+.++++...++...+|. +.+++... +..+...
T Consensus 253 ~la~~~~~~g--~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~ 329 (427)
T PRK02889 253 TLAVALSRDG--NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSY 329 (427)
T ss_pred EEEEEEccCC--CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCC
Confidence 9986544332 24677776 34445666666666778899999997555554556666665 44443322 2112233
Q ss_pred eEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 193 VNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
....+|+|||++|+..+.++ .|.+||+.+++..... .........|+|||+.|+..+.++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-----~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-----DTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-----CCCCccCceECCCCCEEEEEEecC
Confidence 44678999999998877654 5999999888754332 112346789999999988877654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-14 Score=126.93 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=150.0
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-----eC-----cCeEEEeecCC
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-----DV-----SGSVRIWGTHN 90 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-----~~-----d~~i~iwd~~~ 90 (612)
+...++|++|+++|++.+..+.|++..+...+.+...- .+.++.|||-|.+|.+= .. ...+.+|++++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 57899999999999999999999999988644433322 88999999999999872 11 23578999999
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC-CCEEEEE----
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT-RPFRIAT---- 165 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~---- 165 (612)
+. ....+......-.+..|++|..+.+-...+. +.++..+..+. ..-+-|...|+.+.++|. ..+.+|+
T Consensus 115 ~~-~~s~~q~k~Q~~W~~qfs~dEsl~arlv~ne----v~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 115 GV-QRSQIQKKMQNGWVPQFSIDESLAARLVSNE----VQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ce-ehhheehhhhcCcccccccchhhhhhhhcce----EEEEecCCccc-eeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 54 3333333222226899999987655444443 34444443111 112336788999999998 3334554
Q ss_pred -eecCCeEEEEeCCCCeeeeccc---ccccceEEEEECCCCCeE-EEEEc--C---------CcEEEEecCCCCeeeeee
Q 007229 166 -CGEDFLVNFYEGPPFKFKLSHR---EHSNFVNCIRFSPDGSKL-ISVSS--D---------RKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 166 -~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l-~~~~~--d---------g~i~vwd~~~~~~~~~~~ 229 (612)
.+.-..+++|..........+. -....=..+.|++-|.-| +.++. | .++++.+++.......+
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L- 267 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL- 267 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-
Confidence 3556789999877332222111 112233457788877632 22222 2 46888887744555555
Q ss_pred ccCCccccEEEEEEecCCCEEEEEe--CCCcEEEEEe
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVS--ADKSAKVWEI 264 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~iw~~ 264 (612)
...++|.++.|+|+++.++++. .-..+.++|+
T Consensus 268 ---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl 301 (566)
T KOG2315|consen 268 ---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL 301 (566)
T ss_pred ---CCCCCceEEEECCCCCEEEEEEecccceEEEEcC
Confidence 6689999999999998776653 3345666665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-14 Score=125.81 Aligned_cols=359 Identities=16% Similarity=0.185 Sum_probs=218.4
Q ss_pred EEEEecCCEEEEEeCCCCceeeEeccC---CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEE
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEFYGEH---GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDL 108 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 108 (612)
.+++-+.-.+.+|+...........++ ....+..++|++|+++|.+. +..++|++..+...+ +......+.++
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---lt~~~~~~~~L 79 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---LCVELKKTYDL 79 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---EEeccceeeee
Confidence 345555677888887653333322233 55678899999999999885 568999999988632 22233389999
Q ss_pred EECCCCCEEEEEeC-------CCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 109 QWSPDGLRIVACGD-------GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 109 ~~s~~~~~l~~~~~-------~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
.|||-|.+|.+--. .....-+.+|...++.....+......-++..|++|.. ++.--..+.+.+|+....+
T Consensus 80 ~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs--l~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 80 LFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES--LAARLVSNEVQFYDLGSFK 157 (566)
T ss_pred eecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchh--hhhhhhcceEEEEecCCcc
Confidence 99999999876321 11112355666666444444443333336889999985 4544456679999988754
Q ss_pred eeecccccccceEEEEECCCCC--eEEE-----EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE-E
Q 007229 182 FKLSHREHSNFVNCIRFSPDGS--KLIS-----VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT-V 253 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~--~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~ 253 (612)
.... +-|...|..+.+||.+. .+++ .+.-+.++||..........+....-....=..+.|++-|.-|++ +
T Consensus 158 ~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLa 236 (566)
T KOG2315|consen 158 TIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLA 236 (566)
T ss_pred ceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEE
Confidence 3332 23677899999998743 3333 244566888876533222222111011112223344433332111 1
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+. |++ .++
T Consensus 237 st-------dVD---ktn-------------------------------------------------------------- 244 (566)
T KOG2315|consen 237 ST-------DVD---KTN-------------------------------------------------------------- 244 (566)
T ss_pred EE-------eec---CCC--------------------------------------------------------------
Confidence 11 010 000
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
..+ ..+.++++.+++...
T Consensus 245 ------~SY----YGEq~Lyll~t~g~s---------------------------------------------------- 262 (566)
T KOG2315|consen 245 ------ASY----YGEQTLYLLATQGES---------------------------------------------------- 262 (566)
T ss_pred ------ccc----cccceEEEEEecCce----------------------------------------------------
Confidence 000 011222333222110
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE--EecCCeEEEEEccCcccccceeec
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV--GGQNGKLHIYSISGNTLTEEMVLE 491 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~ 491 (612)
..-.+...++|.++.|+|+++.+++ |..-..+.|||++..-+ . .
T Consensus 263 -----------------------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---~--d 308 (566)
T KOG2315|consen 263 -----------------------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---F--D 308 (566)
T ss_pred -----------------------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---E--e
Confidence 0111123457999999999987665 55667899999885433 3 3
Q ss_pred cccCceEEEEEcCCCcEEEEEcCC---CeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec------CcEEE
Q 007229 492 KHRGAITVIQYSPDVSMFASADGN---REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI------DTCVI 562 (612)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------d~~i~ 562 (612)
-..++-+++-|+|.|++|+.++-+ |.+-|||+.+.+++ ..+. ...-+-+.|+|||++++|++. |+.++
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-AKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc-cccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 345788899999999999988754 88999999997776 3333 344567899999999998863 67799
Q ss_pred EEEccC
Q 007229 563 IYEIGK 568 (612)
Q Consensus 563 iwd~~~ 568 (612)
||++..
T Consensus 386 iwhytG 391 (566)
T KOG2315|consen 386 IWHYTG 391 (566)
T ss_pred EEEecC
Confidence 999975
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-11 Score=124.42 Aligned_cols=495 Identities=12% Similarity=0.115 Sum_probs=271.8
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEE----eCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIR----YLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~ 89 (612)
....+.|.++.|-+|...+..+. +|.|.+. +..+.. +.....-...|.|++||||+.+||....++++.+-+-.
T Consensus 72 ~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 72 DDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred cCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 44567999999999998777776 8999888 544433 23344457899999999999999999888888775311
Q ss_pred ----C---------C--ce-------eeeeeee------------------------cCCCeEEEEECCCCCEEEEEeC-
Q 007229 90 ----N---------G--FV-------LKNEFKV------------------------LSGRIDDLQWSPDGLRIVACGD- 122 (612)
Q Consensus 90 ----~---------~--~~-------~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~- 122 (612)
. + +. ...++.+ +...-..++|-.||+++|+.+-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 0 00 0001100 2234567889999999998875
Q ss_pred -CCC-eeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec---CCeEEEEeCC---CCeeeecccccccceE
Q 007229 123 -GKG-KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE---DFLVNFYEGP---PFKFKLSHREHSNFVN 194 (612)
Q Consensus 123 -~~~-~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~---~~~~~~~~~~~~~~v~ 194 (612)
..+ ...++||.-+ |.....-..-.+--.+++|.|.|+ ++|+... ...|.+|.-+ -++....+......|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceee
Confidence 222 3344444433 444444444444456789999999 5777654 3567777632 2333333334567899
Q ss_pred EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 195 CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 195 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
.++|++|+..||....|. |.+|-..+.....+....-.....+..+.|+|. ...|...+.+|.+..++.. ...
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~-----~~v 382 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA-----WDV 382 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE-----EEE
Confidence 999999999999877655 999998776643332212133444556999994 4557777777888777761 000
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEE
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAII 353 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 353 (612)
.. .. ....+. ...++..+ | ..+.
T Consensus 383 ~~---s~-----------------------------------------~~~~~D--~g~vaVID--G---------~~ll 405 (928)
T PF04762_consen 383 SR---SP-----------------------------------------GSSPND--NGTVAVID--G---------NKLL 405 (928)
T ss_pred Ee---cC-----------------------------------------CCCccC--ceEEEEEe--C---------CeEE
Confidence 00 00 000000 00011111 1 2233
Q ss_pred EEEcCCceeee----eceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEE
Q 007229 354 KWIRGVGYSSK----LEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELA 427 (612)
Q Consensus 354 ~wd~~~~~~~~----~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (612)
+-.++....+. ..-....+|.++++ ++..+++...|+.+.+|................. .+....
T Consensus 406 lTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~------ 476 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLS---SISLDS------ 476 (928)
T ss_pred EecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhh---hccccc------
Confidence 33333222211 11115678888998 4445999999999998886554322100000000 000000
Q ss_pred EEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC---CeEEEEEccCccc-ccceeeccccCceEEEEEc
Q 007229 428 LVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN---GKLHIYSISGNTL-TEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~~~-~~~~~~~~~~~~i~~~~~s 503 (612)
............+..++|..+...++....+ ..+.++++..... ........-.+.+..+...
T Consensus 477 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (928)
T PF04762_consen 477 -------------MDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSS 543 (928)
T ss_pred -------------ccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeC
Confidence 0000000012346778888777776666554 5788888743321 1122233334556666666
Q ss_pred CCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCC-c-EEEEeecCcEEEEEEccCCCcceeeeecccc
Q 007229 504 PDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSS-T-MVATGSIDTCVIIYEIGKPASSRITIKNAHL 581 (612)
Q Consensus 504 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~-~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~ 581 (612)
++...++.-..+|.+...+..........+......+..+.+.... + .++.-+..|.+++ . + ..+ .
T Consensus 544 ~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n--~-~~l------a 611 (928)
T PF04762_consen 544 PDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---N--S-RLL------A 611 (928)
T ss_pred CCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---C--C-EEE------e
Confidence 6655566667789888776665544322233222222222332222 1 3333334444443 1 1 222 2
Q ss_pred cCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 582 GGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 582 ~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
..+++....+...|+|. ....+++.++.
T Consensus 612 ~~~tSF~v~~~~Ll~TT-~~h~l~fv~L~ 639 (928)
T PF04762_consen 612 SNCTSFAVTDSFLLFTT-TQHTLKFVHLN 639 (928)
T ss_pred cCCceEEEEcCEEEEEe-cCceEEEEECc
Confidence 45666666544444444 44557776665
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=142.33 Aligned_cols=230 Identities=15% Similarity=0.120 Sum_probs=195.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
....+.|+.+|+.|+.++ -|.|-.+|..++++...+. -...|..+.|-.+.+++|++- ...+.|||-..-+ +. .+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-lH-Cl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-LH-CL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-Ee-eh
Confidence 345689999999999998 7999999999998887665 456899999999999999995 4589999987765 32 22
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
. ....|..+.|.|.--+|++++..+ ++.-.+..+|+.+..+....+.+..++-+|-+. ++-+|...|+|.+|...
T Consensus 207 k-~~~~v~rLeFLPyHfLL~~~~~~G---~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 207 K-RHIRVARLEFLPYHFLLVAASEAG---FLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPN 281 (545)
T ss_pred h-hcCchhhhcccchhheeeecccCC---ceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCC
Confidence 2 235788999999998888888887 677788889999999999999999999999988 79999999999999999
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS 258 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 258 (612)
..+++..+..|.++|.++++.++|+|+++.+.|..++|||++.-..+..+. ...+...+++|..| +++.+....
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----tp~~a~~ls~Sqkg--lLA~~~G~~ 355 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR----TPHPASNLSLSQKG--LLALSYGDH 355 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee----cCCCcccccccccc--ceeeecCCe
Confidence 999999999999999999999999999999999999999999888777772 24567788898666 444445568
Q ss_pred EEEEEe
Q 007229 259 AKVWEI 264 (612)
Q Consensus 259 i~iw~~ 264 (612)
+.+|.-
T Consensus 356 v~iw~d 361 (545)
T KOG1272|consen 356 VQIWKD 361 (545)
T ss_pred eeeehh
Confidence 999964
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-12 Score=120.33 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=122.2
Q ss_pred CeEEEeec--CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC-CeeeEEEEEecCC--c--eeeeeccCCceEEEE
Q 007229 81 GSVRIWGT--HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK-GKSFVRAFMWDSG--T--TVGDFDGHSRRVLSC 153 (612)
Q Consensus 81 ~~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~~--~--~~~~~~~~~~~v~~~ 153 (612)
+.|.+|++ .+++...............++++|++++|.++.... ....+..+.++.. + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 68999888 444421112233556778899999999999998852 2225677777753 2 334444455667789
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCC-Ceeeec--cc-----------ccccceEEEEECCCCCeEEEEEc-CCcEEEEe
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLS--HR-----------EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYD 218 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~--~~-----------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd 218 (612)
+++|++++++++...+|.|.++++.. +..... .. .......++.|+|+++++++... ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 99999998677767799999999876 433322 11 12245789999999999887654 45699999
Q ss_pred cCCCC--eeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEe
Q 007229 219 GKSGE--KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEI 264 (612)
Q Consensus 219 ~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~ 264 (612)
+.... .................++|+|+++++++..+ ++.|.++++
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence 87665 32211111255667899999999998877665 577888888
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=126.02 Aligned_cols=255 Identities=15% Similarity=0.223 Sum_probs=187.6
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe-cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcE
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD-GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSA 259 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 259 (612)
.+...++||.+.++....-|...-+++.+.|.+++||- .+.++....+. .....+++++.+.++...|+++-..|++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh--hhCCCCceEeeeeccceEEEEEEecceE
Confidence 34556789999999988888888899999999999995 34455544441 2456788999999999999999999998
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-ec
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KI 338 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 338 (612)
.-+.+.++-+. ....+....|...+..+.|+ +
T Consensus 93 tefs~sedfnk----------------------------------------------m~~~r~~~~h~~~v~~~if~~~- 125 (404)
T KOG1409|consen 93 TEFALSEDFNK----------------------------------------------MTFLKDYLAHQARVSAIVFSLT- 125 (404)
T ss_pred EEEEhhhhhhh----------------------------------------------cchhhhhhhhhcceeeEEecCC-
Confidence 88877322111 11224455688888888888 5
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceee
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLS 418 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (612)
...+++.+.|..+.---.+.+.... -|.+..
T Consensus 126 -~e~V~s~~~dk~~~~hc~e~~~~lg-----------------------------~Y~~~~------------------- 156 (404)
T KOG1409|consen 126 -HEWVLSTGKDKQFAWHCTESGNRLG-----------------------------GYNFET------------------- 156 (404)
T ss_pred -ceeEEEeccccceEEEeeccCCccc-----------------------------ceEeec-------------------
Confidence 6788888877665322111111100 000000
Q ss_pred ecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceE
Q 007229 419 LALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAIT 498 (612)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~ 498 (612)
..+++.+.-. +..+|...|.|....+....+.....+.+|.+.++
T Consensus 157 ---------------------------------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~ 201 (404)
T KOG1409|consen 157 ---------------------------------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT 201 (404)
T ss_pred ---------------------------------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceE
Confidence 0011111111 56677788888888877777777889999999999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+++|.|..+.|.++..|..+.+||+...+-....+.+|...|..+...+--+.|.+++.||.|.+|+++.
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999999999999999999888777677888999999999999889999999999999999864
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-15 Score=122.76 Aligned_cols=237 Identities=14% Similarity=0.202 Sum_probs=155.1
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD 78 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~ 78 (612)
||+-..-+++.... ...|+++.|.+||..+++++ +..|.|||.+++..+....-.-+.++-+.|||||.+|..+.
T Consensus 181 ~~s~~~~qvl~~pg---h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPG---HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred cccccchhheeCCC---CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 34444444443333 24799999999999999998 68999999999988876545677899999999999999999
Q ss_pred CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC
Q 007229 79 VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 79 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (612)
-|+..++|+..... .......-++.|...+|+|+|++|+.+..... .+.++.|...
T Consensus 258 ~davfrlw~e~q~w-t~erw~lgsgrvqtacWspcGsfLLf~~sgsp-----------------------~lysl~f~~~ 313 (445)
T KOG2139|consen 258 CDAVFRLWQENQSW-TKERWILGSGRVQTACWSPCGSFLLFACSGSP-----------------------RLYSLTFDGE 313 (445)
T ss_pred ccceeeeehhcccc-eecceeccCCceeeeeecCCCCEEEEEEcCCc-----------------------eEEEEeecCC
Confidence 99999999665443 22233344569999999999999887766552 3445555444
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC--------cEEEEecCCCCeeeeeec
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR--------KGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~vwd~~~~~~~~~~~~ 230 (612)
.....-.++.....-+-|+..-.....-+--.+++.+++|.|.|.+|++.-..+ .|.+||.+..-.+.....
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c 393 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC 393 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec
Confidence 331111233233333334332111111111246789999999999999876543 356787664433332211
Q ss_pred cCCccccEEEEEEec---CCCEEEEEeCCCcEEEEEe
Q 007229 231 EDGHHGSIYAVSWSP---DGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~iw~~ 264 (612)
..........++|.| ++.+|..+=..|.+.-|++
T Consensus 394 g~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 394 GMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 111222355667766 5677777777888888887
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-15 Score=125.89 Aligned_cols=259 Identities=11% Similarity=0.089 Sum_probs=183.0
Q ss_pred CccccEEEEEEecCCC--EEEEEeCCCcEEEEEeecCCCCCeeEeee-eccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 233 GHHGSIYAVSWSPDGK--KVLTVSADKSAKVWEILEDGSGGRVIKTF-ASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
.....+..++|.-+++ .+...+.+..+..+.+ ......... ...........+.+....+..++++..+|.+.
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~----~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVI----EEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQ 128 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccc----cCCccccccccccccccccccccchhhcCCEEEEEecCCcEE
Confidence 3445677778876544 3444435666777666 443333332 11111222345666667789999999999999
Q ss_pred EEEcCCCC---CCceeecCcccceeEEEEEecCCcEEEEEecC--CcEEEEEcCCceeeeeceecccceEEEEeeccEEE
Q 007229 310 IFSASNLD---KAPLSFSGHVKNVSTLTALKISQQTILSSSYD--GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIF 384 (612)
Q Consensus 310 ~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 384 (612)
+|....+. .+...+..+ ..+..+.-.+....++++|+.. ..+.+||+...+.+..
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~------------------- 188 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS------------------- 188 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeee-------------------
Confidence 99977543 222233222 3444454455556777788888 7888888876533221
Q ss_pred EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC--C
Q 007229 385 TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD--G 462 (612)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~ 462 (612)
..+-.. ..-.+..+-.++.+.|-+. .
T Consensus 189 ------------aKNvpn----------------------------------------D~L~LrVPvW~tdi~Fl~g~~~ 216 (412)
T KOG3881|consen 189 ------------AKNVPN----------------------------------------DRLGLRVPVWITDIRFLEGSPN 216 (412)
T ss_pred ------------ccCCCC----------------------------------------ccccceeeeeeccceecCCCCC
Confidence 111110 0000111223677888887 8
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
..+|+++.-+.+++||.+.++ .+...+.-...+++++...|+++++.+|..-+.+..+|+++++.....+.+-.+.|++
T Consensus 217 ~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred ceEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 899999999999999998665 4466777778899999999999999999999999999999999987778889999999
Q ss_pred EEecCCCcEEEEeecCcEEEEEEccC
Q 007229 543 LAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 543 ~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+..+|.+++||+++-|+.+||+|+++
T Consensus 296 ih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EEEcCCCceEEeeccceeEEEeeccc
Confidence 99999999999999999999999998
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=129.34 Aligned_cols=288 Identities=15% Similarity=0.107 Sum_probs=197.0
Q ss_pred cCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec
Q 007229 57 EHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD 135 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~ 135 (612)
+|...-+.|..+|||+|+ |+|..-..|++||+.+.. ++..-......|.-.-.+-|-..++..-.+. +|.+. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v~L~~DR---~IefH--a 122 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSVFLQNDR---TIEFH--A 122 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhheEeecCc---eeeeh--h
Confidence 477888999999999986 567788899999999875 4333333334555555555555555555444 11111 1
Q ss_pred CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 136 SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
....-..+ .-+..-..++++.-..- |..++....|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|.
T Consensus 123 k~G~hy~~-RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 123 KYGRHYRT-RIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred hcCeeeee-ecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 11000000 01122344555544443 55555556799999999999999988889999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccC---Cccc-----cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 216 IYDGKSGEKIGEFSSED---GHHG-----SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~---~~~~-----~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
.||.++...+..+.... .|.+ .|+++.|+.+|-.+++|..+|.+.+||+ ...+++..-
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL----Ra~~pl~~k---------- 266 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL----RASKPLLVK---------- 266 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc----ccCCceeec----------
Confidence 99999887776663211 2333 4999999999999999999999999999 555444322
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
-.+..-+|..+.|.+.+++--+.......+++||-.+++......
T Consensus 267 -----------------------------------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 267 -----------------------------------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred -----------------------------------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 122344667777764334444444456789999999998877655
Q ss_pred ecccceEEEEe--eccEEEEecCCCeEEEEecCCCCC
Q 007229 368 KYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGEC 402 (612)
Q Consensus 368 ~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~ 402 (612)
....+..+++ +.++++++..+..+..|-++...+
T Consensus 312 -pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 312 -PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred -ccCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 4444666665 888999999999888777665443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-14 Score=128.60 Aligned_cols=152 Identities=11% Similarity=0.196 Sum_probs=110.4
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccce----eeccccC-----ceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM----VLEKHRG-----AITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~----~~~~~~~-----~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
++++.+++-..+|++|+.+|.|..||.+........ ....|.+ .|+++.|+.+|-.+++|..+|.+.|||+
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 555666666667777777777777776654431111 1122222 4999999999999999999999999999
Q ss_pred CCcceeeecccccccceeEEEecCC--CcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccC
Q 007229 524 VSKEVKLNNMLFHTARINCLAWSPS--STMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGE 600 (612)
Q Consensus 524 ~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~ 600 (612)
++.+++...-.+..-+|..+.|.+. +..+++. +...++|||-.+ + +........ ..+..+++. ++..++++-+
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~-G-k~~asiEpt-~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT-G-KPMASIEPT-SDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhccccc-C-Cceeecccc-CCcCceeeecCCceEEEecC
Confidence 9999876555556678999999875 4456655 456799999998 5 566666544 349999998 7888888888
Q ss_pred CCeEEEEE
Q 007229 601 DACIRVWR 608 (612)
Q Consensus 601 d~~i~~w~ 608 (612)
+..+..|=
T Consensus 334 ~~~m~~yy 341 (703)
T KOG2321|consen 334 SSKMHTYY 341 (703)
T ss_pred CCcceeEE
Confidence 87776553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-12 Score=119.83 Aligned_cols=243 Identities=16% Similarity=0.146 Sum_probs=165.4
Q ss_pred ceeEEEEccCCCEEEEecC-----CEEEEEeCCCC--ce--eeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecC
Q 007229 20 RGILISGNPKTDTILYCNG-----RSVLIRYLDKP--LH--VEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTH 89 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~-----~~i~i~~~~~~--~~--~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~ 89 (612)
....++++|++++|.+... +.|..|.+... ++ +............++++|++++|+++. .+|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 5667999999999988853 58888887753 33 222222345567899999999999987 48999999998
Q ss_pred CCceeeee--eee-----------cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--ee--eee-ccCCceEE
Q 007229 90 NGFVLKNE--FKV-----------LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TV--GDF-DGHSRRVL 151 (612)
Q Consensus 90 ~~~~~~~~--~~~-----------~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~--~~~-~~~~~~v~ 151 (612)
....+... ... ......++.|+|||+++++.....+ .|.++.++... .. ..+ .......+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D--~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD--RVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT--EEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC--EEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 74323222 111 1245789999999999998876655 47778887544 21 222 23446688
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCC--CCeee--eccc----cc--ccceEEEEECCCCCeEEEEEc-CCcEEEEecC
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFK--LSHR----EH--SNFVNCIRFSPDGSKLISVSS-DRKGLIYDGK 220 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~--~~~~----~~--~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~ 220 (612)
.++|+|+++++.++...++.|.++++. ++... ..+. +. ......++++|||++|+++.. .+.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999999888888889999999887 44322 2111 11 125788999999999988765 5779999983
Q ss_pred --CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEee
Q 007229 221 --SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEIL 265 (612)
Q Consensus 221 --~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~~ 265 (612)
+++. ..+............++++|+|++|+++.. ++.|.+|+++
T Consensus 276 ~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 276 PATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 2333 222211122445789999999999998874 5789999884
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-14 Score=134.12 Aligned_cols=222 Identities=12% Similarity=0.083 Sum_probs=146.9
Q ss_pred CCceeEEEEccCCCE--EEEec--C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-----cCeEEEe
Q 007229 18 RGRGILISGNPKTDT--ILYCN--G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-----SGSVRIW 86 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~--l~~~~--~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-----d~~i~iw 86 (612)
.+...+-.|||||+. +++.+ + ..|++.++.+++..+ +....+.....+|||||+.||..+. +..+.+|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 345677899999986 33343 2 489999999887655 4445556667899999999887642 2234557
Q ss_pred ecCCCc--eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeeeccCCceEEEEEEcCCCCE
Q 007229 87 GTHNGF--VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDFDGHSRRVLSCEFKPTRPF 161 (612)
Q Consensus 87 d~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (612)
++..+. ................+|+|||++|+..++..+. .++|.++ .+.....+..+...+....|+|||+.
T Consensus 263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~--~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR--PRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC--ceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 776531 1222222223445678999999999988764432 3466554 23345556556667788999999996
Q ss_pred EEEEeecC--CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc---CCcEEEEecCCCCeeeeeeccCCccc
Q 007229 162 RIATCGED--FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS---DRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 162 ~l~~~~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
++++...+ ..|.+||+.+++..... .....+....|+|||+.|+.... ...|.++|+..++..... ...+
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt----~~~g 415 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV----IGSG 415 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----cCCC
Confidence 44454433 47999999988765433 23345678999999998876543 356888998877655444 3344
Q ss_pred cEEEEEEecCC
Q 007229 237 SIYAVSWSPDG 247 (612)
Q Consensus 237 ~v~~i~~~~~~ 247 (612)
.+...+|+|-.
T Consensus 416 ~~~~p~Ws~~~ 426 (428)
T PRK01029 416 EKRFPSWGAFP 426 (428)
T ss_pred cccCceecCCC
Confidence 56677787743
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-12 Score=112.72 Aligned_cols=427 Identities=16% Similarity=0.140 Sum_probs=234.2
Q ss_pred EEECCC--CCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEE------eecCCeEEEEeC
Q 007229 108 LQWSPD--GLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIAT------CGEDFLVNFYEG 177 (612)
Q Consensus 108 ~~~s~~--~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~------~~~d~~i~~wd~ 177 (612)
.-..|| |..++..+.+. +|..+ +++ ...+..|-+-|+...|+|+|+.+..+ +...+-+.+.+.
T Consensus 42 ~~l~PDI~GD~IiFt~~Dd------lWe~slk~g~-~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~ 114 (668)
T COG4946 42 YYLNPDIYGDRIIFTCCDD------LWEYSLKDGK-PLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPS 114 (668)
T ss_pred hhcCCcccCcEEEEEechH------HHHhhhccCC-eeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeC
Confidence 334564 66676666665 77766 444 34567788999999999999963331 223456778888
Q ss_pred CCCeeeec-ccccccceEEEEECCCCCeEEEEEcCCcEE----EEecCCCCe-eeeeeccCCccccEEEEEEecCCCEEE
Q 007229 178 PPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGL----IYDGKSGEK-IGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 178 ~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~----vwd~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
+.|+..+. +-+ ..--.-.-|.|||+.+++...-.-.. +|.+..... ...+ .-++.+.+.+- || .++
T Consensus 115 e~Ge~kRiTyfG-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L-----nlGpathiv~~-dg-~iv 186 (668)
T COG4946 115 EDGEAKRITYFG-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL-----NLGPATHIVIK-DG-IIV 186 (668)
T ss_pred CCCcEEEEEEec-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeec-----cCCceeeEEEe-CC-EEE
Confidence 88876554 222 22223346899999887755432222 233222111 1111 23455555543 45 233
Q ss_pred EEeCCCc------------EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC
Q 007229 252 TVSADKS------------AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA 319 (612)
Q Consensus 252 ~~~~dg~------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 319 (612)
.|-..-. =++|--.+.+.+.+..-.+..+-+ +.+.......+....+|.=.+|...-..+-
T Consensus 187 igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS-------~PmIV~~RvYFlsD~eG~GnlYSvdldGkD 259 (668)
T COG4946 187 IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVS-------SPMIVGERVYFLSDHEGVGNLYSVDLDGKD 259 (668)
T ss_pred EccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcC-------CceEEcceEEEEecccCccceEEeccCCch
Confidence 3321111 234433222222222222222110 001111223333444554444443332222
Q ss_pred ceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecC
Q 007229 320 PLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~ 398 (612)
++.|+.--.--.-+ +.+++.++- +..|.|.+||..+.....+... ++
T Consensus 260 ---lrrHTnFtdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~----------------------------lp 307 (668)
T COG4946 260 ---LRRHTNFTDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIG----------------------------LP 307 (668)
T ss_pred ---hhhcCCchhccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecC----------------------------Cc
Confidence 22232211111111 222444443 2346777887766554433211 00
Q ss_pred CCCCCccceeccCCCcceee-ecCCCCcEEEEEeeccEEEee-cccceeeecccceEEEEEEccCCCeEEEEecCC-eEE
Q 007229 399 EGECGDAEHIDVGSQPLDLS-LALSSPELALVSTESGVILLD-SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-KLH 475 (612)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~v~ 475 (612)
.... ........+..-+. +++.....++.-+.+...+.+ .....-.+.++..|.-..+.-+++-++.|..|| .+-
T Consensus 308 l~rk--~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~ 385 (668)
T COG4946 308 LDRK--KKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLG 385 (668)
T ss_pred cccc--cccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEE
Confidence 0000 00000000111111 333334455555555555554 233334445666788888888888999999999 999
Q ss_pred EEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEe
Q 007229 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATG 555 (612)
Q Consensus 476 i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 555 (612)
|||..+++. ..+...-+.|.++..+|+|++++.+.....+-+.|+.++.... .-....+-|+...|+|+++++|-+
T Consensus 386 iyd~~~~e~---kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 386 IYDKDGGEV---KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred EEecCCceE---EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcCCceeEEEe
Confidence 999999885 5566667889999999999999999999999999999998863 334456789999999999999988
Q ss_pred ecCc----EEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 556 SIDT----CVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 556 ~~d~----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
--+| .|+++|+.. + + +.......+.=.+-+|. ++++|.-
T Consensus 462 fP~gy~tq~Iklydm~~-~-K-iy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 462 FPEGYYTQSIKLYDMDG-G-K-IYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred cCcceeeeeEEEEecCC-C-e-EEEecCCcccccCcccCCCCcEEEE
Confidence 6554 699999987 3 2 22222233333455666 6666543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-13 Score=117.29 Aligned_cols=335 Identities=14% Similarity=0.172 Sum_probs=208.9
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
.+|+-.+...-..+....-++....|||.|.+|++.... .|.+|.-..+..+..+ .| ..|..+.|+|++++|.+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~----~~-~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF----RH-PDVKYLDFSPNEKYLVT 88 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee----ec-CCceecccCcccceeee
Confidence 445555544444454466789999999999999987664 4999998887766666 33 46899999999999998
Q ss_pred EeCCC---------------cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC
Q 007229 253 VSADK---------------SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 253 ~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
-+..+ .+.+||. .++..+..+.........-.+.-...++.+. +--....+.++++.. .
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~----~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~-ARvv~~sl~i~e~t~-n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDI----ASGMIVFSFNGISQPYLGWPVLKFSIDDKYV-ARVVGSSLYIHEITD-N 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEec----cCceeEeeccccCCcccccceeeeeecchhh-hhhccCeEEEEecCC-c
Confidence 65433 4999999 9999999988765432221122222223333 333667888888622 2
Q ss_pred CCceeecC-cccceeEEEEEec-CCcEEEE-----EecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEec-
Q 007229 318 KAPLSFSG-HVKNVSTLTALKI-SQQTILS-----SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAG- 387 (612)
Q Consensus 318 ~~~~~~~~-~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~- 387 (612)
.....+.. ....+....+++. +...|+. .+.++.+++|.+..+.......-....-..+.+ .+++++.-.
T Consensus 163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence 11111111 1245566666632 2333443 456677888887755544433222221122222 222222110
Q ss_pred ----------CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee-cccceEEEE
Q 007229 388 ----------FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI-DLGFTVTAC 456 (612)
Q Consensus 388 ----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 456 (612)
.+..++++++.. +.+... ...++|...
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e------------------------------------------~~i~V~~~~~~pVhdf 280 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITE------------------------------------------RSIPVEKDLKDPVHDF 280 (561)
T ss_pred EeeecccceeccceEEEEeecc------------------------------------------cccceeccccccceee
Confidence 011222222221 111111 456789999
Q ss_pred EEccCCCeEEEE--ecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC---CeEEEEecCCcceeee
Q 007229 457 AIAPDGSEAIVG--GQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN---REAIVWDRVSKEVKLN 531 (612)
Q Consensus 457 ~~s~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~ 531 (612)
+|.|.++.+++. -.+-.+.++|++++ + ...+ ....=+.+-|||.+++++.++-| |.+-+||.........
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l--~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~ 355 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGN-L--RFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG 355 (561)
T ss_pred eecccCCceeEEecccccceeecccccc-e--EEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE
Confidence 999998887664 47788999999876 3 2222 23445667899999999998765 7899999988877654
Q ss_pred cccccccceeEEEecCCCcEEEEee------cCcEEEEEEccC
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGS------IDTCVIIYEIGK 568 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~------~d~~i~iwd~~~ 568 (612)
.+.+ ...+-+.|+||++++.+.. .|..++|||+..
T Consensus 356 ~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 356 AFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred Eeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 5543 3345678999999887664 477899999986
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-13 Score=118.46 Aligned_cols=234 Identities=12% Similarity=0.126 Sum_probs=159.9
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC---------------e
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG---------------S 82 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~---------------~ 82 (612)
.-.+..+.+||.|++|++.....|.+|.-+....+..+. | ..|.-+.|||.++||.+=+..+ .
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 346788999999999999999999999988776555554 3 4689999999999999965333 4
Q ss_pred EEEeecCCCceeeeeeeecCCC--eE-EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC---CceEEEEEEc
Q 007229 83 VRIWGTHNGFVLKNEFKVLSGR--ID-DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH---SRRVLSCEFK 156 (612)
Q Consensus 83 i~iwd~~~~~~~~~~~~~~~~~--i~-~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~~v~~~~~~ 156 (612)
+.+||..++. +...+.....+ .. -+.|+-+.+++|-...+. +.|+.. ++. +...+.+ ...+....|+
T Consensus 110 ~~vwd~~sg~-iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s----l~i~e~-t~n-~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 110 VFVWDIASGM-IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS----LYIHEI-TDN-IEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred eeEEeccCce-eEeeccccCCcccccceeeeeecchhhhhhccCe----EEEEec-CCc-cccCchhhccccceeeEEec
Confidence 9999999998 55566655554 44 788999999888765443 445543 222 1111111 3567888999
Q ss_pred CCCCE-EEEE-----eecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-----------CCcEEEEec
Q 007229 157 PTRPF-RIAT-----CGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-----------DRKGLIYDG 219 (612)
Q Consensus 157 ~~~~~-~l~~-----~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~vwd~ 219 (612)
|.++. .|+. .+.++.+++|.+.....+.+-.-....=..+.|.+.|++|+.--. ...+.++++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 97432 2333 466789999998877665543323333456788999987765321 245777877
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe--CCCcEEEEEe
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS--ADKSAKVWEI 264 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~iw~~ 264 (612)
+........ ...++|...+|.|.++.+++.+ .+-.+.++|+
T Consensus 263 ~e~~i~V~~----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 263 TERSIPVEK----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred cccccceec----cccccceeeeecccCCceeEEecccccceeeccc
Confidence 643333332 5578899999999887776654 4556666665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-14 Score=117.70 Aligned_cols=160 Identities=23% Similarity=0.349 Sum_probs=117.5
Q ss_pred EEEEECCCCCEEEEEeCC---CC-e---eeEEEEEec-CCceeeeecc-CCceEEEEEEcCCCCEEEE-EeecCCeEEEE
Q 007229 106 DDLQWSPDGLRIVACGDG---KG-K---SFVRAFMWD-SGTTVGDFDG-HSRRVLSCEFKPTRPFRIA-TCGEDFLVNFY 175 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~---~~-~---~~i~i~~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~-~~~~d~~i~~w 175 (612)
..+.|+|+|++|+.-... .. . ....++.++ .+.+...+.- ..++|.+++|+|+++.+++ .|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999988776551 11 1 124566665 3444555543 3457999999999985433 34567899999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
|++ ++.+..+. ...+..+.|+|+|++|++++.+ |.+.+||.++.+.+... .|. .+..++|+|||+++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~----~~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF----EHS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc----ccC-cEEEEEEcCCCCEEEE
Confidence 997 55555553 5678899999999999998754 67999999988888777 444 4789999999999999
Q ss_pred EeC------CCcEEEEEeecCCCCCeeEeeee
Q 007229 253 VSA------DKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 253 ~~~------dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
+.. |+.++||+. .|+.+....
T Consensus 161 a~t~~r~~~dng~~Iw~~-----~G~~l~~~~ 187 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSF-----QGRLLYKKP 187 (194)
T ss_pred EEeccceeccccEEEEEe-----cCeEeEecc
Confidence 874 688999998 466655543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-14 Score=133.65 Aligned_cols=217 Identities=14% Similarity=0.157 Sum_probs=143.8
Q ss_pred CCCceeEEEEccCCCEEEEec--C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcC--eEEEeecC
Q 007229 17 ERGRGILISGNPKTDTILYCN--G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSG--SVRIWGTH 89 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~--~i~iwd~~ 89 (612)
+...+...+|||||+.|++.+ + ..|.+||+.+++... +....+.+...+|||||+.|+. .+.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 345678899999999999976 2 479999999887654 4444555668999999998874 44454 68888998
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
+++ . ..+..+........|+|||+.|+..++..+. ..++.++ +++. ..+...........|+|++++++++..
T Consensus 276 ~~~-~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~--~~iy~~d~~~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 276 SRQ-L-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK--PQIYKVNVNGGRA-ERVTFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred CCC-e-EEcccCCCCcCCeEECCCCCEEEEEECCCCC--ceEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEc
Confidence 876 3 2455566667778999999999888765433 2455554 5543 333222233446789999997555544
Q ss_pred cCC--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 168 EDF--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 168 ~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
.++ .|.+||+.+++....... .......|+|||+.++..+.+ ..+.++++. +.....+. .+.+.+...+
T Consensus 351 ~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~---~~~g~~~~p~ 424 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP---TAQGEVREPS 424 (430)
T ss_pred cCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc---CCCCCcCCCc
Confidence 444 578889988765432221 222356899999998877654 346677764 44444442 3344566667
Q ss_pred Eec
Q 007229 243 WSP 245 (612)
Q Consensus 243 ~~~ 245 (612)
|+|
T Consensus 425 ws~ 427 (430)
T PRK00178 425 WSP 427 (430)
T ss_pred cCC
Confidence 765
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-13 Score=128.40 Aligned_cols=218 Identities=14% Similarity=0.079 Sum_probs=141.6
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE---EeeCc--CeEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA---SADVS--GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la---s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
.|.+.|.+.+...+ +......+..-+|||||+.++ +...+ ..|.+.++.+++. ..+....+.....+|||||
T Consensus 166 ~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCCC
Confidence 67788887665544 555666778899999997532 34333 3577788887753 3444456666778999999
Q ss_pred CEEEEEeCCCCeeeEEE--EEecC---CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE--eCCC-Ceeeecc
Q 007229 115 LRIVACGDGKGKSFVRA--FMWDS---GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPP-FKFKLSH 186 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i--~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w--d~~~-~~~~~~~ 186 (612)
++|+..++..+...+.+ ++.+. ++.......+.......+|+|||+.++.+...+|...+| ++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 99998875422212333 33333 233333333334456789999999755555566755555 4432 2223334
Q ss_pred cccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC---CCcEE
Q 007229 187 REHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA---DKSAK 260 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~ 260 (612)
..+...+....|+|||++|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+.... ...|.
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----TSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----CCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 4445567788999999999877653 46999999888765433 22345677899999998876543 24577
Q ss_pred EEEe
Q 007229 261 VWEI 264 (612)
Q Consensus 261 iw~~ 264 (612)
++++
T Consensus 399 ~vdl 402 (428)
T PRK01029 399 LISL 402 (428)
T ss_pred EEEC
Confidence 7777
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-13 Score=132.28 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=144.5
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
..|.++|...... +.+..+...+...+|||||++||.++.+ ..|.+||+.+++. ..+..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 3688889875544 4466677789999999999999987643 4799999998853 23445566777899999999
Q ss_pred EEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeeccccccc
Q 007229 116 RIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHSN 191 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~ 191 (612)
.|+......+. ..++.++ ++ ....+..+........|+|+++.++++...++ .|.++|+.+++.. .+..+..
T Consensus 247 ~l~~~~~~~~~--~~i~~~d~~~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGN--PDIYVMDLDGK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG 322 (417)
T ss_pred EEEEEECCCCC--ccEEEEECCCC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC
Confidence 88866543322 2455555 44 34455555555667899999996445544444 5777888776643 3333455
Q ss_pred ceEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 192 FVNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
......|+|+|++++.++.++ .|.+||+.++... .+. . ........|+||+++|+..+.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~---~-~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT---D-TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc---C-CCCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999888776 7899998876543 331 1 12234568999999988877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-14 Score=119.83 Aligned_cols=246 Identities=14% Similarity=0.133 Sum_probs=183.1
Q ss_pred CcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeec------eecccceEEEEeeccEEEEecCCCeEEEEec
Q 007229 325 GHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLE------KKYDARIKCLAAVEEVIFTAGFDNKVWRVPL 397 (612)
Q Consensus 325 ~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~------~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~ 397 (612)
.....++.++|. +.....+...+.+..+..+.+......... .....+|..+...+..|+++-.+|.+.+|..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 345677888888 444555666657777777776665554432 2256778888888999999999999999998
Q ss_pred CCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC-eEEEEecC--CeE
Q 007229 398 CEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS-EAIVGGQN--GKL 474 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d--g~v 474 (612)
..+... . ..+..+....++..+.-++... .+|+|+.. ..+
T Consensus 133 k~~d~h-------s------------------------------s~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 133 KSGDLH-------S------------------------------SKLIKLATGPGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred cCCccc-------c------------------------------ccceeeecCCceeeeccCCCCCceEecCchhcccce
Confidence 755422 0 0111111222345555555444 45668988 889
Q ss_pred EEEEccCcccccceeeccc---------cCceEEEEEcCC--CcEEEEEcCCCeEEEEecCCcceeeecccccccceeEE
Q 007229 475 HIYSISGNTLTEEMVLEKH---------RGAITVIQYSPD--VSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCL 543 (612)
Q Consensus 475 ~i~d~~~~~~~~~~~~~~~---------~~~i~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 543 (612)
.+||+...+. +..-+.- .-.++++.|-|. ...+|++..-+.+++||.+.+......+..-..+++++
T Consensus 176 kiwdle~~~q--iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 176 KIWDLEQSKQ--IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred eeeeccccee--eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 9999987743 2211110 124778899887 88999999999999999998887777777778899999
Q ss_pred EecCCCcEEEEeecCcEEEEEEccCCCcceee-eecccccCeeeEEEe-cCceEEEccCCCeEEEEEecc
Q 007229 544 AWSPSSTMVATGSIDTCVIIYEIGKPASSRIT-IKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 544 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
...|+++++.+|..-+.+..||.+. + ..+. .+.+-.+.|++|... ...+|+++|-|..|||+|+++
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~-~-kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRG-G-KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eecCCCcEEEEecccchhheecccC-c-eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999999998 5 4444 488999999999998 558899999999999999986
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-13 Score=117.50 Aligned_cols=232 Identities=15% Similarity=0.202 Sum_probs=156.7
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-----------cCeEEEeecC
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-----------SGSVRIWGTH 89 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-----------d~~i~iwd~~ 89 (612)
-+-+.|||.|.||++-.-..|.+|--++-..++.+. |. .|.-+.|||+.+||+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 357899999999999999899999877766666564 54 5889999999999999542 2469999999
Q ss_pred CCceeeeeeeecCC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 90 NGFVLKNEFKVLSG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 90 ~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
+|. +...+....+ .-.-..||.|++++|-...++ |.|+.-.+-.++..-.-....|....|+|.+. +||--
T Consensus 291 tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s----isIyEtpsf~lld~Kslki~gIr~FswsP~~~-llAYw 364 (698)
T KOG2314|consen 291 TGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS----ISIYETPSFMLLDKKSLKISGIRDFSWSPTSN-LLAYW 364 (698)
T ss_pred ccc-hhcceeccCCCccccceEEeccCCceeEEeccce----EEEEecCceeeecccccCCccccCcccCCCcc-eEEEE
Confidence 998 5556655322 223568999999999888765 33443333222222223446788889999987 56643
Q ss_pred ec-----CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCee-eeeec
Q 007229 167 GE-----DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKI-GEFSS 230 (612)
Q Consensus 167 ~~-----d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~-~~~~~ 230 (612)
.. -..+-+-.+.+++.+++-.-++-.=..|-|-.+|.+|..--. -..+-|+.++..... ...
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-- 442 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-- 442 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--
Confidence 32 245677778888777775555544456777788888876321 122445555544332 222
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCC---CcEEEEEe
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSAD---KSAKVWEI 264 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~iw~~ 264 (612)
.....|...+|-|.|+.+++.+.. .++.+|.+
T Consensus 443 --elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~ 477 (698)
T KOG2314|consen 443 --ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAV 477 (698)
T ss_pred --ecchheeeeeeccCCCeEEEEEccccccceeEEEe
Confidence 456778899999999888776543 34444444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-13 Score=130.95 Aligned_cols=216 Identities=13% Similarity=0.182 Sum_probs=142.1
Q ss_pred CCceeEEEEccCCCEEEEec--C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcCe--EEEeecCC
Q 007229 18 RGRGILISGNPKTDTILYCN--G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSGS--VRIWGTHN 90 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~~--i~iwd~~~ 90 (612)
.+.+.+..|||||+.|++.+ + ..|++||+.+++... +....+.....+|||||+.||. .+.+|. |.+||+.+
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 34667899999999999985 2 379999999887544 3333344557899999998875 455664 77888887
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
++ . ..+..+.......+|+|||++|+..+...+. ..+|.++ +++. ..+..........+|+|+|++++++...
T Consensus 296 g~-~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~--~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 296 KA-L-TRITRHRAIDTEPSWHPDGKSLIFTSERGGK--PQIYRVNLASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CC-e-EECccCCCCccceEECCCCCEEEEEECCCCC--ceEEEEECCCCCE-EEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 75 3 3445555667789999999999888765443 3566655 4443 3332222333457899999975555554
Q ss_pred CC--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC-C--cEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 169 DF--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD-R--KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 169 d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
++ .|.++|+.+++... +... .......|+|||++|+..+.+ + .+.+++. +|.....+. .+.+.+...+|
T Consensus 371 ~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~---~~~g~~~~p~W 444 (448)
T PRK04792 371 NGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP---AGQGEVKSPAW 444 (448)
T ss_pred CCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc---CCCCCcCCCcc
Confidence 55 45556887776533 2221 112345799999988776653 3 3677776 566555552 34455667777
Q ss_pred ec
Q 007229 244 SP 245 (612)
Q Consensus 244 ~~ 245 (612)
+|
T Consensus 445 sp 446 (448)
T PRK04792 445 SP 446 (448)
T ss_pred CC
Confidence 76
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=113.53 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=109.7
Q ss_pred ceeEEEEccCCCEEEEecC-----------CEEEEEeCC-CCceeeEec-cCCCceEEEEECCCCCEEEEe--eCcCeEE
Q 007229 20 RGILISGNPKTDTILYCNG-----------RSVLIRYLD-KPLHVEFYG-EHGYPVTVARYSPNGEWIASA--DVSGSVR 84 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~-----------~~i~i~~~~-~~~~~~~~~-~h~~~v~~~~~s~d~~~las~--~~d~~i~ 84 (612)
.-..+.|+|+|++|++-.. +...+|.++ .+.....+. ...++|.+++|+|+|+.+|.. ..++.|.
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 3457899999999977642 234455542 122333333 245679999999999987654 4677999
Q ss_pred EeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEE
Q 007229 85 IWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 164 (612)
+||++ ++ . ....+...+..+.|+|+|++|+.++.++....+.+|+.++.+.+..... ..++.++|+|+|++ ++
T Consensus 87 lyd~~-~~-~--i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~-~~ 159 (194)
T PF08662_consen 87 LYDVK-GK-K--IFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRY-LA 159 (194)
T ss_pred EEcCc-cc-E--eEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCE-EE
Confidence 99997 33 2 2333467888999999999999998665333467777777777766653 34789999999997 55
Q ss_pred Eee------cCCeEEEEeCCCCeeee
Q 007229 165 TCG------EDFLVNFYEGPPFKFKL 184 (612)
Q Consensus 165 ~~~------~d~~i~~wd~~~~~~~~ 184 (612)
++. .|..++||+.. |+.+.
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeE
Confidence 554 37889999975 44443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-13 Score=113.13 Aligned_cols=359 Identities=13% Similarity=0.119 Sum_probs=230.3
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe-CCCCeeeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE-GPPFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd-~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
.++.++||.+.+++...-|..+ -+++.+.|.++++|- ...++.-..+. ....+++++.+.++...|+.|-..|++.-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 4566789999999999999888 499999999999995 33343333322 24567899999999999999999999998
Q ss_pred EecCCCCee-eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 217 YDGKSGEKI-GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 217 wd~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+.+...-.. ........|...+..+-|+....++++.+.|..+.---. +.+..+..+.... ...+..++
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~----e~~~~lg~Y~~~~------~~t~~~~d 164 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT----ESGNRLGGYNFET------PASALQFD 164 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEee----ccCCcccceEeec------cCCCCcee
Confidence 876532211 111112478999999999999999999999987654444 4444444433322 11112222
Q ss_pred CCEEEEEEcCCEEEEEEcCCC-CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-ecccce
Q 007229 296 NDHLITVSLGGIISIFSASNL-DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-KYDARI 373 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~i 373 (612)
-...+.|...|.+....+... -.++..+.+|.+.+.++.|.+. ...+.+|..|..+.+||+...+-..... .|...|
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 226677778888887776544 4566788999999999999832 7889999999999999998776655433 388888
Q ss_pred EEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee-----cccce--
Q 007229 374 KCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD-----SLKVM-- 444 (612)
Q Consensus 374 ~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-- 444 (612)
..+.. .-..+++++.||.|.+|+.+..............-..+ +.-..|+ ..+.+
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c----------------~qpffwn~~~m~~~k~~gl 307 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKC----------------NQPFFWNFRQMWDRKQLGL 307 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhh----------------CchHHHHHHHHHhhhhhhh
Confidence 88887 67889999999999999987655432222111100000 0000000 00000
Q ss_pred --eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccC-----cccccceeeccccCceEEEEEcCCCcEEEEEcCCCe
Q 007229 445 --SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISG-----NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNRE 517 (612)
Q Consensus 445 --~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 517 (612)
.....-+...+..-+.......+.+..=.+++.|.-. ....+...+..-...|+++.+...-.+|++++.|+.
T Consensus 308 r~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rv 387 (404)
T KOG1409|consen 308 RQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRV 387 (404)
T ss_pred hhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceE
Confidence 0000111111222222222222222233455544321 111223444444457999999998899999999999
Q ss_pred EEEEecCC
Q 007229 518 AIVWDRVS 525 (612)
Q Consensus 518 i~iwd~~~ 525 (612)
|+|||+..
T Consensus 388 i~iwd~~~ 395 (404)
T KOG1409|consen 388 IKIWDVRS 395 (404)
T ss_pred EEEEechh
Confidence 99999864
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-11 Score=103.57 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=131.2
Q ss_pred cCeEEEeecCCCce--eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC--Cce--eeeeccCCceEEEE
Q 007229 80 SGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS--GTT--VGDFDGHSRRVLSC 153 (612)
Q Consensus 80 d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~--~~~--~~~~~~~~~~v~~~ 153 (612)
+.-|.+|++.+... -...+....+.++-++|+|++++|.++...+....+..+.|+. |+. +........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56699999984432 2224445677899999999999999988774444577888884 432 22223333445889
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCC-Ceeeec--ccccccc----------eEEEEECCCCCeEEEEEc-CCcEEEEec
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLS--HREHSNF----------VNCIRFSPDGSKLISVSS-DRKGLIYDG 219 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~--~~~~~~~----------v~~~~~s~~~~~l~~~~~-dg~i~vwd~ 219 (612)
++++++++++.+-...|.|.++-++. |.+... ...|.+. +....+.|++++|++..- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999997666666679999998865 333222 2234444 888999999999988754 235999999
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEe
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEI 264 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~ 264 (612)
..|+....-...-........|.|+|++++.....+ +++|.+|..
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 987765433222245667889999999998877665 789999998
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-11 Score=108.86 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=168.7
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCeeeeeeccCC-c---c
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKIGEFSSEDG-H---H 235 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~-~---~ 235 (612)
+.|.+.|..+++.+..+..-..+- .+ ++||++.|+++.. +..|.+||..+.+.+.++..... + .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999999888776433322 34 9999998887765 78899999999999998853211 1 2
Q ss_pred ccEEEEEEecCCCEEEEEe-C-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 236 GSIYAVSWSPDGKKVLTVS-A-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
.....++++|||+++++.. . +..|.+.|+ .+++.+..+..... ..++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~----~~~kvv~ei~vp~~--------------~~vy~t----------- 155 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL----EGKAFVRMMDVPDC--------------YHIFPT----------- 155 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEEC----CCCcEEEEEeCCCC--------------cEEEEe-----------
Confidence 2344789999999998776 3 689999999 88888887765320 000000
Q ss_pred CCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEE
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVW 393 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~ 393 (612)
. +..+..-+.||......+......... ...
T Consensus 156 -----------------------~--e~~~~~~~~Dg~~~~v~~d~~g~~~~~------------------------~~~ 186 (352)
T TIGR02658 156 -----------------------A--NDTFFMHCRDGSLAKVGYGTKGNPKIK------------------------PTE 186 (352)
T ss_pred -----------------------c--CCccEEEeecCceEEEEecCCCceEEe------------------------eee
Confidence 0 111111222333222211110000000 000
Q ss_pred EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCC
Q 007229 394 RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNG 472 (612)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg 472 (612)
+++.... ..+ ..+ .|++ +|+++.+..+ |
T Consensus 187 vf~~~~~--------------------------------------------~v~--~rP----~~~~~dg~~~~vs~e-G 215 (352)
T TIGR02658 187 VFHPEDE--------------------------------------------YLI--NHP----AYSNKSGRLVWPTYT-G 215 (352)
T ss_pred eecCCcc--------------------------------------------ccc--cCC----ceEcCCCcEEEEecC-C
Confidence 0000000 000 011 3455 8888888777 9
Q ss_pred eEEEEEccCcccccceee---c-------cccCceEEEEEcCCCcEEEEEc----------CCCeEEEEecCCcceeeec
Q 007229 473 KLHIYSISGNTLTEEMVL---E-------KHRGAITVIQYSPDVSMFASAD----------GNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~---~-------~~~~~i~~~~~s~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~ 532 (612)
.|++.|+.+........+ . -..+.+.-++++|+++.+.... ..+.|.++|..+++.+...
T Consensus 216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i 295 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI 295 (352)
T ss_pred eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence 999999754432111111 1 0223344599999999888742 2257999999999988554
Q ss_pred ccccccceeEEEecCCCc-EEEEee-cCcEEEEEEccCCCcceeeee
Q 007229 533 MLFHTARINCLAWSPSST-MVATGS-IDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~~~ 577 (612)
.. ...+..++++||++ +|.+.. .++.|.+.|..+ + +.+...
T Consensus 296 ~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~-k~i~~i 338 (352)
T TIGR02658 296 EL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-G-KELSSV 338 (352)
T ss_pred eC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-C-eEEeee
Confidence 44 45789999999999 777665 678899999988 4 455444
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-13 Score=126.13 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=139.0
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
.|.++|.+.... +.+..+...+.+..|||||+.||..+.+ ..|.+||+.+++.. .+....+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCE
Confidence 777888776544 4466678899999999999999876533 35889999887631 23333344557899999999
Q ss_pred EEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeecccccccce
Q 007229 117 IVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHSNFV 193 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~v 193 (612)
|+......+. ..||.++ .+.....+..+.......+|+||+++++++...++ .|.++|+.+++.... .......
T Consensus 276 La~~~~~~g~--~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~ 352 (448)
T PRK04792 276 LALVLSKDGQ--PEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQN 352 (448)
T ss_pred EEEEEeCCCC--eEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCC
Confidence 9876544332 3455555 23334556666666778899999997666655554 466667777664332 1122223
Q ss_pred EEEEECCCCCeEEEEEcC-C--cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-Cc--EEEEEe
Q 007229 194 NCIRFSPDGSKLISVSSD-R--KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KS--AKVWEI 264 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~--i~iw~~ 264 (612)
...+|+|||++|+..+.+ + .|.++|+.+++... +. .. .......|+|||+.++..+.+ |. +.+++.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt---~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT---ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 456899999998876653 3 45667887776532 31 11 112245799999988776654 33 455554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-12 Score=111.68 Aligned_cols=327 Identities=16% Similarity=0.189 Sum_probs=193.5
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-----------CCcEEE
Q 007229 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-----------DKSAKV 261 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----------dg~i~i 261 (612)
=+-+.|||-|.||++-...| |.+|--++-..++.+ .|. .|.-+.|||+.+||++-+. ...+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF----~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF----YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc----cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 45689999999999987655 999988877778877 565 4889999999999998653 257999
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 341 (612)
||+ .+|...+.|.........-+++.-..++.+++.-.. +.|.+|+.... .++..-.-....|....|++. +.
T Consensus 287 WDI----~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf-~lld~Kslki~gIr~FswsP~-~~ 359 (698)
T KOG2314|consen 287 WDI----ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF-MLLDKKSLKISGIRDFSWSPT-SN 359 (698)
T ss_pred EEc----cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce-eeecccccCCccccCcccCCC-cc
Confidence 999 999999999876443333334333344555554444 78888885542 111112223345566666652 23
Q ss_pred EEEEEec-----CCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCc
Q 007229 342 TILSSSY-----DGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQP 414 (612)
Q Consensus 342 ~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 414 (612)
+|+--.. --.+.+..+.+.+.++....++..=..+.+ ++++|..-- -.....
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv-------dR~tK~-------------- 418 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV-------DRHTKS-------------- 418 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE-------Eeeccc--------------
Confidence 3322111 112333333333333322212211122222 233322110 000000
Q ss_pred ceeeecCCCCcEEEEEeeccEEEee---cccceeeecccceEEEEEEccCCCeEEEEecC---CeEEEEEccCc--cccc
Q 007229 415 LDLSLALSSPELALVSTESGVILLD---SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN---GKLHIYSISGN--TLTE 486 (612)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~v~i~d~~~~--~~~~ 486 (612)
. +.+.-..+.++. ..-++...+.+..+...+|-|.|..+++-+.+ .++.+|.+++. +...
T Consensus 419 ----------~--~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 419 ----------K--VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred ----------c--ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 0 000000111111 22344555677789999999999888775533 47899988742 2222
Q ss_pred ceeeccccCceEEEEEcCCCcEEEEE---cCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec------
Q 007229 487 EMVLEKHRGAITVIQYSPDVSMFASA---DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI------ 557 (612)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------ 557 (612)
+..+.. ...+.+.|+|.|++++.+ +..|.+.++|+............| ...+.+.|.|.|+|+++++.
T Consensus 487 Vk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 487 VKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred hhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcc
Confidence 333333 567889999999998876 456889999998644332222223 34678999999999999874
Q ss_pred CcEEEEEEccC
Q 007229 558 DTCVIIYEIGK 568 (612)
Q Consensus 558 d~~i~iwd~~~ 568 (612)
|.--+||++..
T Consensus 564 d~GYri~tfqG 574 (698)
T KOG2314|consen 564 DNGYRIFTFQG 574 (698)
T ss_pred ccceEEEEeec
Confidence 45577888765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=114.01 Aligned_cols=297 Identities=13% Similarity=0.128 Sum_probs=179.5
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCC-CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS-GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
...-|.++.|...|.+|++|..+|.|.++.-..... .......++.+.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe------------------------------- 72 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE------------------------------- 72 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccC-------------------------------
Confidence 345688999999999999999999999997521111 000111121111
Q ss_pred cCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 313 ASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
++.-...--.-...|..+.|. +.+...++..+.|.+|++|.+.........
T Consensus 73 ---pEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~------------------------- 124 (433)
T KOG1354|consen 73 ---PEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEG------------------------- 124 (433)
T ss_pred ---cccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccccc-------------------------
Confidence 000000111234567888888 555678888889999999987654332200
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 471 (612)
|++.... ....+..+ ++.+...-+... ....+.+..-.|...|.++.++.|+..++++. |
T Consensus 125 ---~~~~~~~--------~~~~~~~l-------r~p~~~~~~~~v-ea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-d 184 (433)
T KOG1354|consen 125 ---YNLPEEG--------PPGTITSL-------RLPVEGRHDLEV-EASPRRVYANAHTYHINSISVNSDKETFLSAD-D 184 (433)
T ss_pred ---ccccccC--------CCCcccee-------eceeecccccee-eeeeeeeccccceeEeeeeeecCccceEeecc-c
Confidence 0000000 00000000 000000000000 00112222333778899999999999888754 5
Q ss_pred CeEEEEEccCccc-ccceeec-----cccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCccee------eec------
Q 007229 472 GKLHIYSISGNTL-TEEMVLE-----KHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSKEVK------LNN------ 532 (612)
Q Consensus 472 g~v~i~d~~~~~~-~~~~~~~-----~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~------~~~------ 532 (612)
=.|.+|+++--.. ..+..++ .-..-|++..|+| ....++..+..|+|++-|++...+. .+.
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 6799998863221 0111222 2235699999999 5678888889999999999854321 110
Q ss_pred ---ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc------------C---eeeEEEe-cCc
Q 007229 533 ---MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG------------G---VYGVAFM-DDF 593 (612)
Q Consensus 533 ---~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~------------~---v~~~~~~-~~~ 593 (612)
+..--..|..+.|+++|+++++-+. -+|++||+.... +++.+..-|.. . -..++|+ ++.
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~-~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA-KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC-CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 1112246888999999999998755 469999997745 66666665543 2 2467889 888
Q ss_pred eEEEccCCCeEEEEEecc
Q 007229 594 NVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 594 ~l~s~~~d~~i~~w~~~~ 611 (612)
+++||+....++++++..
T Consensus 343 ~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred eEecccccceEEEecCCC
Confidence 999999999999999654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-13 Score=126.23 Aligned_cols=213 Identities=15% Similarity=0.131 Sum_probs=142.0
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
.|.++|.+.+.. +.+..+...+...+|||||+.||..+.+ ..|.+||+.+++. ..+....+.+...+|+|||++
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 588889886554 4466678889999999999999876543 3699999998863 233444455667999999999
Q ss_pred EEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeecccccccc
Q 007229 117 IVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHSNF 192 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~ 192 (612)
|+......+. ..||.++ +++ ...+..+........|+|+++.++++...++ .|.++++.+++..... .....
T Consensus 257 la~~~~~~g~--~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~ 332 (430)
T PRK00178 257 LAFVLSKDGN--PEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNY 332 (430)
T ss_pred EEEEEccCCC--ceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCC
Confidence 9865543332 2455555 443 4456666666777899999997555554444 5777788777643322 11223
Q ss_pred eEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-Cc--EEEEEe
Q 007229 193 VNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KS--AKVWEI 264 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~--i~iw~~ 264 (612)
.....|+|||++|+....++ .|.+||+.+++... +. .........|+|||+.++..+.+ |. +.++++
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt----~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT----DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc----CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 34578999999998776532 48889998876533 31 11122356899999998877654 33 444454
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-13 Score=128.36 Aligned_cols=200 Identities=15% Similarity=0.187 Sum_probs=137.9
Q ss_pred CceeEEEEccCCCEEEEec-C---CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcC--eEEEeecCCC
Q 007229 19 GRGILISGNPKTDTILYCN-G---RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSG--SVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~--~i~iwd~~~~ 91 (612)
..+...+|||||++|++.. + ..|++||+.+++... +..+.+.+.+++|+|||+.|+. .+.++ .|.+||+.++
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence 3577889999999999986 2 489999999886654 4456677788999999997764 44444 5888999887
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. . ..+..+........|+|||++|+..+...+. ..||.++ +++ ...+..+...+....|+|++++ ++..+.+
T Consensus 269 ~-~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~--~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~-i~~~~~~ 342 (417)
T TIGR02800 269 Q-L-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGS--PQIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDL-IAFVHRE 342 (417)
T ss_pred C-E-EECCCCCCCCCCEEECCCCCEEEEEECCCCC--ceEEEEECCCCC-EEEeecCCCCccCeEECCCCCE-EEEEEcc
Confidence 5 2 2344455555678999999999888765433 2455555 333 4455556667788899999996 5555555
Q ss_pred C---eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC---cEEEEecCCCCeeeee
Q 007229 170 F---LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR---KGLIYDGKSGEKIGEF 228 (612)
Q Consensus 170 ~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~ 228 (612)
+ .|.+||+.++.... +... .......|+|||++|+..+.++ .+.+.+. ++.....+
T Consensus 343 ~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 343 GGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred CCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 4 78899988765432 2222 2245568999999988877754 3455553 34444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.2e-11 Score=99.82 Aligned_cols=275 Identities=15% Similarity=0.132 Sum_probs=179.9
Q ss_pred CCEEEEEeCCCC--ce-eeEeccCCCceEEEEECCCCCEEEEeeC---cCeEEEeecCC--Cce-eeeeeeecCCCeEEE
Q 007229 38 GRSVLIRYLDKP--LH-VEFYGEHGYPVTVARYSPNGEWIASADV---SGSVRIWGTHN--GFV-LKNEFKVLSGRIDDL 108 (612)
Q Consensus 38 ~~~i~i~~~~~~--~~-~~~~~~h~~~v~~~~~s~d~~~las~~~---d~~i~iwd~~~--~~~-~~~~~~~~~~~i~~~ 108 (612)
+..|++|++++. +. ...+..+.+.++-++|+|+++.|.++-. +|.|.-|.+.. ++. +.........+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 578999998832 21 1224457888999999999999988754 57788888775 442 111222223345899
Q ss_pred EECCCCCEEEEEeCCCCeeeEEEEEecC-Cceee--eeccCCce----------EEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 109 QWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVG--DFDGHSRR----------VLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 109 ~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
+++++|++|+++.-..+ .+.++-.+. |.... .+..|.+. +....|.|++++++++.-.--.|.+|
T Consensus 95 svd~~g~~vf~AnY~~g--~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSG--SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCc--eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 99999999999987765 367776653 33222 22334444 78899999999755555444579999
Q ss_pred eCCCCeeeeccc---ccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCC-Ceeeeee---c-cC--CccccEEEEEEe
Q 007229 176 EGPPFKFKLSHR---EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSG-EKIGEFS---S-ED--GHHGSIYAVSWS 244 (612)
Q Consensus 176 d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~-~~~~~~~---~-~~--~~~~~v~~i~~~ 244 (612)
++..+++...-. ......+.|.|+|++++.+..++ +++|.+|..... ..+..+. . +. .......+|..+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 999877654311 34456889999999998887776 899999998773 2222221 1 11 233456788999
Q ss_pred cCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC-CEEEEEEcCCCC
Q 007229 245 PDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG-GIISIFSASNLD 317 (612)
Q Consensus 245 ~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 317 (612)
+||++|.++.. ...|.+|.++..+ ..+.............+-+.+...++.|+++..+ ..+.+|......
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~---g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDG---GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCC---CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 99999887754 2478888885322 2233333332223334455556667777777664 568888765543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=109.54 Aligned_cols=117 Identities=15% Similarity=0.281 Sum_probs=83.6
Q ss_pred ceEEEEEEccC-CCeEEEEecCCeEEEEEccCccccc--cee------------eccccCceEEEEEcCCCcEEEEEcCC
Q 007229 451 FTVTACAIAPD-GSEAIVGGQNGKLHIYSISGNTLTE--EMV------------LEKHRGAITVIQYSPDVSMFASADGN 515 (612)
Q Consensus 451 ~~i~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~~--~~~------------~~~~~~~i~~~~~s~~~~~l~~~~~d 515 (612)
.-|++..|+|. ...++..+..|+|++.|++...+-- ... +.+--..|..+.|+++|+++++-+.
T Consensus 214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy- 292 (433)
T KOG1354|consen 214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY- 292 (433)
T ss_pred HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-
Confidence 34788889994 4677888899999999998543200 000 1112246889999999999998765
Q ss_pred CeEEEEecCCcceeeecccccc------------cc---eeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 516 REAIVWDRVSKEVKLNNMLFHT------------AR---INCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 516 ~~i~iwd~~~~~~~~~~~~~~~------------~~---i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
-+|++||+...........-|. .. -..++|+-++.+++||+....+++++...
T Consensus 293 ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 293 LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 5899999955443334444343 11 23578999999999999999999999665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.2e-11 Score=108.66 Aligned_cols=451 Identities=12% Similarity=0.086 Sum_probs=269.9
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
......|++|+....|+|.|+.||.++|-.+.+...-. +.+-|+..+.-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-----------------~~~glaa~snL-------------- 61 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-----------------NKSGLAAASNL-------------- 61 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcc-----------------ccccccccccc--------------
Confidence 34567899999999999999999999998887654100 00113322221
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc--ccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
..-+++.||...|.-+.|+.+.+ .|-+...+|.|.+|-+-.+.....+. ....-|.+|+|+.||..+...-.||.|.
T Consensus 62 smNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred chhhhhccCcceEEEEEeccccc-cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 12346889999999999999988 59999999999999987776555433 2446789999999999999999999998
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC---eeEeeeeccCccccceeeeee
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG---RVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 292 (612)
+=.++..+....- -.......+.|++|.+.++.+-..|.+.++|...+.... .+.-......+ .....+...
T Consensus 141 VGsvdGNRIwgKe----Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s-~~~~kia~i 215 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKE----LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS-NFPTKIAEI 215 (1189)
T ss_pred EEeeccceecchh----cchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec-CCCccccce
Confidence 8776544333222 122334578899999988888889999999973211110 01000000000 000011122
Q ss_pred e----------ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCC---------cEE
Q 007229 293 L----------WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG---------AII 353 (612)
Q Consensus 293 ~----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~ 353 (612)
. .+...++++..+|.+.+..-.+...+...-.+ -.+....|++. +..++.++.+. .|.
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~-G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHN-GAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCC-CcEEEEccCcccccCccccceEE
Confidence 2 23567889999999988875555554443333 45666777721 77777776542 344
Q ss_pred EEEcCCceeeeeceecccceEEEEeec-cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe-
Q 007229 354 KWIRGVGYSSKLEKKYDARIKCLAAVE-EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST- 431 (612)
Q Consensus 354 ~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 431 (612)
+|.. -+.....+......|+++++.+ ..-+.-..|+.|.+-+++..-.- ..-...++.+..
T Consensus 293 Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykW----------------gy~e~TvVy~y~~ 355 (1189)
T KOG2041|consen 293 FYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKW----------------GYIEETVVYVYQK 355 (1189)
T ss_pred Eecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccceE----------------EEeeeEEEEEEcc
Confidence 4432 3344444444778889999944 44445566777777666532210 000001111111
Q ss_pred ----eccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEc-cCcccccceee--------ccccCceE
Q 007229 432 ----ESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSI-SGNTLTEEMVL--------EKHRGAIT 498 (612)
Q Consensus 432 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~-~~~~~~~~~~~--------~~~~~~i~ 498 (612)
.-++..|++.........-.+..+++++.+.-.|+.-..+|.+.-++. ++........+ ...-..|.
T Consensus 356 ~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdir 435 (1189)
T KOG2041|consen 356 EELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIR 435 (1189)
T ss_pred CCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceee
Confidence 123555664444444444445677888877777777777776665532 11111000001 00001122
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCccee-------------------------------eecccccccceeEEEecC
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKEVK-------------------------------LNNMLFHTARINCLAWSP 547 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------------~~~~~~~~~~i~~~~~s~ 547 (612)
-.-..-++.+++.++.+ .+.+|.....+.. .+++.+...+|.+++.+
T Consensus 436 P~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s- 513 (1189)
T KOG2041|consen 436 PKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS- 513 (1189)
T ss_pred eeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec-
Confidence 11122366677778776 5788865432211 12233455678778775
Q ss_pred CCcEEEEeecCcEEEEEEccC
Q 007229 548 SSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 548 ~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.++|..+-..|.|+-|.+.+
T Consensus 514 -dk~l~vareSG~I~rySl~n 533 (1189)
T KOG2041|consen 514 -DKFLMVARESGGIYRYSLNN 533 (1189)
T ss_pred -ceEEEEEeccCceEEEEecc
Confidence 46888898999999999887
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-11 Score=112.49 Aligned_cols=300 Identities=12% Similarity=0.064 Sum_probs=184.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
.++.++.++.+..+|..+|+.+....-.......... ++..++.++.++.+..+|.++|+.+.... ....+.+.
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~----~~~~~~~~ 140 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAK----LSSEVLSP 140 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeec----cCceeecC
Confidence 5888888999999999999988765433321222222 46678888999999999999999887763 22222221
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 242 SWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
-.. .+..++.++.+|.+..||. .+++.+-.+..................++.++.+..++.+..+|.........
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~----~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDA----ATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEc----CCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeee
Confidence 111 2446777778999999999 88887776654332110000011122246788888889999999766543322
Q ss_pred eecCccc---------ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 322 SFSGHVK---------NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 322 ~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
.-..... .+..-.... +..++.++.+|.+..+|..+++...... . .........++.++.++.+|.+
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~-~~~~~p~~~~~~vyv~~~~G~l 291 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSGRVLWKRD-A-SSYQGPAVDDNRLYVTDADGVV 291 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCCEEEEEECCCCcEEEeec-c-CCccCceEeCCEEEEECCCCeE
Confidence 1100000 010001112 5678888889999999999887654332 1 1223344577888888999999
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG 472 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 472 (612)
..+|..+++.. |.... +. .....+..+ .+..+++++.+|
T Consensus 292 ~~~d~~tG~~~----------------------------------W~~~~----~~-~~~~ssp~i--~g~~l~~~~~~G 330 (377)
T TIGR03300 292 VALDRRSGSEL----------------------------------WKNDE----LK-YRQLTAPAV--VGGYLVVGDFEG 330 (377)
T ss_pred EEEECCCCcEE----------------------------------Ecccc----cc-CCccccCEE--ECCEEEEEeCCC
Confidence 99998776532 10000 00 000111112 356888999999
Q ss_pred eEEEEEccCcccccceeeccccCceE-EEEEcCCCcEEEEEcCCCeEEEE
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAIT-VIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
.|+++|..+++. ...++.+...+. ...+ .++ .|+.++.||.|+.+
T Consensus 331 ~l~~~d~~tG~~--~~~~~~~~~~~~~sp~~-~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 331 YLHWLSREDGSF--VARLKTDGSGIASPPVV-VGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEECCCCCE--EEEEEcCCCccccCCEE-ECC-EEEEEeCCceEEEe
Confidence 999999999887 444444443332 2222 233 57788889988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-11 Score=111.60 Aligned_cols=205 Identities=23% Similarity=0.357 Sum_probs=155.3
Q ss_pred CCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec---CCCeEEEEE------CC-------------CCCEEEEEeCCCC
Q 007229 68 SPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL---SGRIDDLQW------SP-------------DGLRIVACGDGKG 125 (612)
Q Consensus 68 s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~------s~-------------~~~~l~~~~~~~~ 125 (612)
.|-+.|+|....||.+++||...++ +.+.+... .+.-.+..| +| .++.+++-|...+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 3556799999999999999999887 44444422 223333333 22 2334444444443
Q ss_pred eeeEEEEEecCCceeeeec--cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC
Q 007229 126 KSFVRAFMWDSGTTVGDFD--GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS 203 (612)
Q Consensus 126 ~~~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 203 (612)
. +.++....++....+. .|.+.|.++.++.+-. .+.+++.|+.+..|+......+...+.-...+.+++.+|||.
T Consensus 81 ~--v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 81 S--VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred c--EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 2 4444455777777765 6999999999999887 699999999999999999999999998899999999999999
Q ss_pred eEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-----CCEEEEEe-CCCcEEEEEeecCCCCCeeEeee
Q 007229 204 KLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-----GKKVLTVS-ADKSAKVWEILEDGSGGRVIKTF 277 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~ 277 (612)
.|++++ ++|++||+++++.+..| .+|.++|.++.|..+ |.+++++. .+..+.+|-.......+.....+
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~f---tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl 232 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITF---TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSL 232 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEe---cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheee
Confidence 999887 78999999999999999 499999999999887 67766653 45668888885544555555555
Q ss_pred eccC
Q 007229 278 ASST 281 (612)
Q Consensus 278 ~~~~ 281 (612)
....
T Consensus 233 ~~~d 236 (541)
T KOG4547|consen 233 TVPD 236 (541)
T ss_pred ccCC
Confidence 5443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-10 Score=100.38 Aligned_cols=260 Identities=10% Similarity=0.051 Sum_probs=159.2
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC----------cCeEEEeecCCCceeeeeeeec-------
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV----------SGSVRIWGTHNGFVLKNEFKVL------- 101 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~------- 101 (612)
++|.+.|.++.+.+..+..-..+- .+ +||||+.|..+.. +..|.+||..+.+.+. .+..-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhhc
Confidence 799999999999888776433332 24 9999998887654 7899999999998543 33321
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEE--------EEcCCCCEEEEEeecCCeEE
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSC--------EFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~l~~~~~d~~i~ 173 (612)
......++++|||++|++...+... .+.+.+..+++.+..+.-.. ...-. ..+.|+..+-++-..+|...
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~-~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSP-AVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCC-EEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence 1234588999999999987755222 57788888888888776422 11111 22233332222222333211
Q ss_pred EEeCCCCeeeecccc-----cccceEEEEECC-CCCeEEEEEcCCcEEEEecCCC-----Ceeeeeecc----CCccccE
Q 007229 174 FYEGPPFKFKLSHRE-----HSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSG-----EKIGEFSSE----DGHHGSI 238 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~----~~~~~~v 238 (612)
.=.. ..+.+ ...+ .|++ +|++++...+ |+|.+.|+... +....+... .-..+.+
T Consensus 182 ~~~~------~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 182 IKPT------EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred Eeee------eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 0000 00111 0112 3455 8887776665 99999996443 222222111 0123344
Q ss_pred EEEEEecCCCEEEEEeC----------CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 239 YAVSWSPDGKKVLTVSA----------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
.-++++++++.+++... .+.|.++|. .+++.+..+...
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi~~i~vG---------------------------- 298 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRLRKIELG---------------------------- 298 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEEEEEeCC----------------------------
Confidence 55999999998887431 246888888 777777665533
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCc-EEEEEe-cCCcEEEEEcCCceeeeec
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ-TILSSS-YDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~ 366 (612)
..+..+++++. ++ .+++.. .++.|.++|..+.+.....
T Consensus 299 -------------------~~~~~iavS~D-gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 299 -------------------HEIDSINVSQD-AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -------------------CceeeEEECCC-CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 25667777743 44 555544 6788999999888776654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=117.79 Aligned_cols=148 Identities=19% Similarity=0.278 Sum_probs=127.1
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccc
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTA 538 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 538 (612)
+.|...++-|...|.|.+|++..+++.....-..|.++|+++.++.+-..|.+++.|+.+..|+....... ..+.....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-~~~~~~~~ 145 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-RIWKEQKP 145 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee-eeeccCCC
Confidence 34556788899999999999999998655556789999999999999999999999999999999998876 45666777
Q ss_pred ceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-c-----CceEEE-ccCCCeEEEEEecc
Q 007229 539 RINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-D-----DFNVVS-SGEDACIRVWRLAT 611 (612)
Q Consensus 539 ~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~-----~~~l~s-~~~d~~i~~w~~~~ 611 (612)
.+.+++.+|||..|++++ ++|++||+++ . +.+..+.+|.++|..+.|. + |.++++ ...+.-+.+|-++.
T Consensus 146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~-k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS--RQIKVLDIET-K-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceEEEcCCCCEEEecc--ceEEEEEccC-c-eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 899999999999999986 5799999999 7 8899999999999999998 6 566555 45667788888764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-10 Score=108.04 Aligned_cols=306 Identities=10% Similarity=0.094 Sum_probs=179.3
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
+..+++++.++.+..+|..+|+.+.......... .... .++..+++++.+|.+..+|. .+++.+-......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~--v~~~~v~v~~~~g~l~ald~----~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVG--ADGGLVFVGTEKGEVIALDA----EDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceE--EcCCEEEEEcCCCEEEEEEC----CCCcEeeeeccCc
Confidence 5678888889999999999999887763221111 1222 24667888888999999998 7777765443221
Q ss_pred ccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 282 SNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.+.+..... +..++.++.+|.+..+|..+++
T Consensus 136 -----------------------------------------------~~~~~p~v~--~~~v~v~~~~g~l~a~d~~tG~ 166 (377)
T TIGR03300 136 -----------------------------------------------EVLSPPLVA--NGLVVVRTNDGRLTALDAATGE 166 (377)
T ss_pred -----------------------------------------------eeecCCEEE--CCEEEEECCCCeEEEEEcCCCc
Confidence 000000011 4456666677788888877766
Q ss_pred eeeeceecccce-----EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEE
Q 007229 362 SSKLEKKYDARI-----KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436 (612)
Q Consensus 362 ~~~~~~~~~~~i-----~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (612)
............ ......++.++.+..++.+..+|..++...............
T Consensus 167 ~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~--------------------- 225 (377)
T TIGR03300 167 RLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT--------------------- 225 (377)
T ss_pred eeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC---------------------
Confidence 544332111110 111224457777888888888888776533111000000000
Q ss_pred EeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC
Q 007229 437 LLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR 516 (612)
Q Consensus 437 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 516 (612)
...... ....+..+ .+..+++++.+|.++.||..+++..-..... ...... .++..+..++.||
T Consensus 226 ------~~~~~~--~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 226 ------ELERLV--DVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred ------chhhhh--ccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC----CccCce--EeCCEEEEECCCC
Confidence 000000 00000111 2457777888999999999988753222111 112222 2456788888999
Q ss_pred eEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCe-eeEEEecCceE
Q 007229 517 EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGV-YGVAFMDDFNV 595 (612)
Q Consensus 517 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~l 595 (612)
.+..+|..+++.+.+..........+... .+..|++++.+|.++++|..+ + +.+..+..+...+ .+..+. ++.|
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-G-~~~~~~~~~~~~~~~sp~~~-~~~l 364 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED-G-SFVARLKTDGSGIASPPVVV-GDGL 364 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC-C-CEEEEEEcCCCccccCCEEE-CCEE
Confidence 99999999998765431111112222222 466888999999999999988 6 6666666555443 333343 4568
Q ss_pred EEccCCCeEEEE
Q 007229 596 VSSGEDACIRVW 607 (612)
Q Consensus 596 ~s~~~d~~i~~w 607 (612)
+.++.||.|..+
T Consensus 365 ~v~~~dG~l~~~ 376 (377)
T TIGR03300 365 LVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCceEEEe
Confidence 889999998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-11 Score=99.00 Aligned_cols=245 Identities=14% Similarity=0.167 Sum_probs=163.3
Q ss_pred CEEEEEeCCCCceee---EeccCCCceEEEEECC---CCC-EEEEeeCcCeEEEeecCCCceeeeeeeecC---C---Ce
Q 007229 39 RSVLIRYLDKPLHVE---FYGEHGYPVTVARYSP---NGE-WIASADVSGSVRIWGTHNGFVLKNEFKVLS---G---RI 105 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~---~~~~h~~~v~~~~~s~---d~~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~---~---~i 105 (612)
|.+.+|+++..+... ........+..+.|+- +|. .|+-+..+|.|.++........ ..+.+-. - .-
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss-~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS-VHLRGLSSKKISVVEA 124 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee-eeecccchhhhhheee
Confidence 578888887654433 1112334556666664 555 5667778899999987765431 1222211 1 24
Q ss_pred EEEEECCCCCEEEEEeCCCCeeeEEEEEecCC--ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC-CCee
Q 007229 106 DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG--TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PFKF 182 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~ 182 (612)
.++.|++.+..+++.-.++. +.+...... +.++..+.|.-+...+.|+...+.++.+|+.|+.+..||++ .++.
T Consensus 125 lslD~~~~~~~i~vs~s~G~---~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGS---ISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCc---EEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 57789999998887766663 232233322 34457899999999999999888899999999999999998 5555
Q ss_pred eec-ccccccceEEEEECC-CCCeEEEEEcCCcEEEEecC-CCCeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCc
Q 007229 183 KLS-HREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKS 258 (612)
Q Consensus 183 ~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~ 258 (612)
+.. .+-|...|.++.-+| .+.++++|+.|-.|++||.+ -++++..- .-.+.|..+..+|.-. .++.++.-.-
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcC
Confidence 555 567889999998886 57799999999999999998 46666655 5568999999999432 2333344445
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
.++-+..+.... ...............++..|+
T Consensus 278 ~ki~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd 310 (339)
T KOG0280|consen 278 AKILDSSDKVLE----FQIVLPSDKIHDSLCYGGDWD 310 (339)
T ss_pred ceEEEecccccc----hheeeeccccccceeeccccc
Confidence 777777332221 222222223344556666664
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.6e-11 Score=109.90 Aligned_cols=194 Identities=14% Similarity=0.100 Sum_probs=127.7
Q ss_pred ceeEEEEccCCCE-EEEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eC--cCeEEEeecCCC
Q 007229 20 RGILISGNPKTDT-ILYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DV--SGSVRIWGTHNG 91 (612)
Q Consensus 20 ~v~~~~~s~d~~~-l~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~--d~~i~iwd~~~~ 91 (612)
......|||||+. +++.+ ...|+++|+.+++..... ...+......|||||+.|+.. +. +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4568999999995 66644 258999999998776643 456667788999999877654 33 356888888777
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC--
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-- 169 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 169 (612)
+ .. .+..+........|+|||+.|+..++..+...+.+.+.++++..+... .... ...|+|+|++++++....
T Consensus 268 ~-~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 268 T-LT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred c-EE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCc
Confidence 5 32 444444434566899999999998876554334444444555433322 1111 248999999766665543
Q ss_pred ------CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC---cEEEEecCC
Q 007229 170 ------FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR---KGLIYDGKS 221 (612)
Q Consensus 170 ------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~ 221 (612)
..|.+.|+.++.... +... .......|+|||+.++....++ .+.+.++..
T Consensus 343 ~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 368888988876543 3322 2233588999999887766532 355666643
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-11 Score=97.87 Aligned_cols=271 Identities=12% Similarity=0.072 Sum_probs=168.2
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEec---CCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP---DGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
.|.+.+|++.+.+....-.........+..+.|.- +|. .++-+..+|.|.++.. ........++.-......
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~----~~~~ss~~L~~ls~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRN----DEDESSVHLRGLSSKKIS 120 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEee----ccceeeeeecccchhhhh
Confidence 35677777766554441111123344566666653 444 4566667899999988 444444444443333332
Q ss_pred ee-eeeeecc--CCEEEEEEcCCEEEEEEcC-CCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce-
Q 007229 287 DM-LVGCLWQ--NDHLITVSLGGIISIFSAS-NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY- 361 (612)
Q Consensus 287 ~~-~~~~~~~--~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~- 361 (612)
.. ..++.|+ +..+++.-.+|.+.+.+.. ..-+..+..++|.-+.+...|+..+.+++++|+.|+.+..||++...
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 22 3444444 7778999999998854422 22334457889999999999996668999999999999999999433
Q ss_pred eeee-ceecccceEEEEe---eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEE
Q 007229 362 SSKL-EKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVIL 437 (612)
Q Consensus 362 ~~~~-~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (612)
.... ...|...|.++.- .+.++++|+.|..|++||.++-..
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----------------------------------- 245 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----------------------------------- 245 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-----------------------------------
Confidence 3322 2338888988888 455999999999999999875332
Q ss_pred eecccceeeecccceEEEEEEccC--CCeEEEEecCCeEEEEEccCcccc---cceeeccccCceEEEEEcCCCcEEEEE
Q 007229 438 LDSLKVMSKIDLGFTVTACAIAPD--GSEAIVGGQNGKLHIYSISGNTLT---EEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 438 ~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
++..-...+.|..+..+|. ++.|++.-.+| .+|.+.+.+... .......|.+-...-.|..-..+||++
T Consensus 246 -----Pl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 246 -----PLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred -----ccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 1222223456888888883 33455444444 677777655443 223334455555555553334567775
Q ss_pred c-CCCeEE-EEecCCc
Q 007229 513 D-GNREAI-VWDRVSK 526 (612)
Q Consensus 513 ~-~d~~i~-iwd~~~~ 526 (612)
+ .|+.++ +|-..++
T Consensus 320 sFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 320 SFYDKKIRQLWLHITG 335 (339)
T ss_pred eccccceeeeeeeccC
Confidence 4 455544 6644333
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-10 Score=104.35 Aligned_cols=211 Identities=9% Similarity=0.043 Sum_probs=135.7
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCE-EEEeeC---cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEW-IASADV---SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-las~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
..|.+-|.+......... .. .+....|||||+. ++..+. +..|.++|+.+++. ..+....+......|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 477777777655444333 33 7889999999985 664433 35699999988863 2344455667778999999
Q ss_pred CEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeCCCCeeeecccccc
Q 007229 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEGPPFKFKLSHREHS 190 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~ 190 (612)
+.|+......+. -.+|.++ .++ ...+..+........|+|||+.++++....+ .|.+.|+.+++....... .
T Consensus 245 ~~la~~~~~~g~--~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g 320 (419)
T PRK04043 245 SKLLLTMAPKGQ--PDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G 320 (419)
T ss_pred CEEEEEEccCCC--cEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-C
Confidence 988876553332 3466655 443 4455545444455689999997666655444 577778887776443221 1
Q ss_pred cceEEEEECCCCCeEEEEEcC---------CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-CcEE
Q 007229 191 NFVNCIRFSPDGSKLISVSSD---------RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KSAK 260 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~ 260 (612)
. ....|+|||++|+..... ..|.+.|+++++.. .+. . ........|+|||+.++....+ +.-.
T Consensus 321 ~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT---~-~~~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 321 K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT---A-NGVNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC---C-CCCcCCeEECCCCCEEEEEEccCCcEE
Confidence 1 124899999998877654 26888898887653 331 1 1223357899999988776654 3333
Q ss_pred EEEe
Q 007229 261 VWEI 264 (612)
Q Consensus 261 iw~~ 264 (612)
++-+
T Consensus 394 L~~~ 397 (419)
T PRK04043 394 LGII 397 (419)
T ss_pred EEEE
Confidence 4443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-09 Score=114.12 Aligned_cols=242 Identities=10% Similarity=0.053 Sum_probs=155.9
Q ss_pred eEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEecc-C-------------CCceEEEEECCCCCEEEEee-CcCeEE
Q 007229 22 ILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGE-H-------------GYPVTVARYSPNGEWIASAD-VSGSVR 84 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~-h-------------~~~v~~~~~s~d~~~las~~-~d~~i~ 84 (612)
..+++++++..|.++. ++.|.++|... ..+..+.+ . -.....+++.+++..|..+. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4689998755555554 68999999874 44433332 1 12357899999988766654 456899
Q ss_pred EeecCCCceeeeeeeec-----------------CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc--
Q 007229 85 IWGTHNGFVLKNEFKVL-----------------SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG-- 145 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~-----------------~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~-- 145 (612)
++|..++. + ..+.+. -.....++|+|++..+.++..+.. .|.+++..++.. ..+.+
T Consensus 650 ~id~~~~~-V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~--~I~v~d~~~g~v-~~~~G~G 724 (1057)
T PLN02919 650 EIDFVNET-V-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH--QIWEYNISDGVT-RVFSGDG 724 (1057)
T ss_pred EEecCCCE-E-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC--eEEEEECCCCeE-EEEecCC
Confidence 99988764 2 222210 113467999995555544433322 234444333332 22211
Q ss_pred -------C------CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-------------cc--------ccc
Q 007229 146 -------H------SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-------------RE--------HSN 191 (612)
Q Consensus 146 -------~------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-------------~~--------~~~ 191 (612)
+ -.....++++|+++.++++.+.++.|++||+.++...... .. .-.
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 1 1245679999999877778888899999998876532111 00 011
Q ss_pred ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc----------CCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE----------DGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
....++++++|+.+++-..++.|++||..++......... .+.-.....++++++|+.+++-+.++.|++
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 3468899999998888888999999999877655433110 012235778999999998888888999999
Q ss_pred EEeecCCCCCee
Q 007229 262 WEILEDGSGGRV 273 (612)
Q Consensus 262 w~~~~~~~~~~~ 273 (612)
||+ .+++.
T Consensus 885 id~----~~~~~ 892 (1057)
T PLN02919 885 LDL----NKGEA 892 (1057)
T ss_pred EEC----CCCcc
Confidence 999 66554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=128.71 Aligned_cols=198 Identities=17% Similarity=0.254 Sum_probs=158.5
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD- 135 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~- 135 (612)
.|-..|.++.=+|...+-+||+.||.|++|....+..+...-..-...|+.+.|+.+|.....+..|+ .+..|+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg-----~l~l~q~ 2280 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDG-----DLSLWQA 2280 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCC-----ceeeccc
Confidence 35567888888888899999999999999999988875544444458899999999999888877776 366666
Q ss_pred CCceeeeeccCCceEEEEEEcCCCCEEEEEee---cCCeEEEEeCC--CCe-eeecccccccceEEEEECCCCCeEEEEE
Q 007229 136 SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG---EDFLVNFYEGP--PFK-FKLSHREHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~wd~~--~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
..++....+.|......+.|-.. ++++++ .++.+.+||.- .+. ++. ..|.+.++++++.|..+.|++|+
T Consensus 2281 ~pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred CCcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC
Confidence 35667777889999999998873 577664 46899999932 222 233 68999999999999999999999
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
.+|.|++||++..+.++.+.. +. ...++++++..|.++||++ .....+.++....
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~----s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRL----SEFGLLHTFPSEH 2410 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEc----cccchhhcCchhh
Confidence 999999999998888777721 33 5678999999999999999 7777777776654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=127.48 Aligned_cols=191 Identities=13% Similarity=0.197 Sum_probs=156.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
.|.++.-+|...+.++|+ +|.|++|....++.+..++ .-...|+.+.|+.+|.....+..||.+.+|.+... ....
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk--~~~s 2287 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK--PYTS 2287 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc--ceec
Confidence 567788889888888887 8999999999888877654 23489999999999999999999999999999833 5556
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-----ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-----TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
...|......+.|-. ..+++++...... .+.+||+- ..++ ..|.+.++++++.|..+ ++++|+.+|.|
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~--n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v 2360 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNR--NVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEV 2360 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCC--cccchhcccCcccceee--eecCCCceEEEEcCcce-EEEecCCcCcE
Confidence 778888899999876 6677776544332 35566632 2333 88999999999999998 79999999999
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
++||++..++++.++. +. ...++++++..|.++||++.....+..+.
T Consensus 2361 ~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999888777664 34 56689999999999999999888887774
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=105.28 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=114.2
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCccc----ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL----TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
....+..+++++++|++..+....++++..... .....+......++.+..+......-.+++...+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 355667889999999999988887887765432 1111222222233333333333333334555666777766655
Q ss_pred eeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCeEEEE
Q 007229 528 VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVW 607 (612)
Q Consensus 528 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 607 (612)
. ....+|-+.++.++|+||+++++++..|..|++-.+.... ..-...-||..-|..++.-++..|+|+|.|++|++|
T Consensus 144 ~--~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 C--EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred c--chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 4 3466799999999999999999999999999999988733 444456689999999998888889999999999999
Q ss_pred EeccC
Q 007229 608 RLATE 612 (612)
Q Consensus 608 ~~~~~ 612 (612)
|+.++
T Consensus 221 d~~sg 225 (390)
T KOG3914|consen 221 DITSG 225 (390)
T ss_pred ecccC
Confidence 99764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=114.79 Aligned_cols=293 Identities=12% Similarity=0.160 Sum_probs=199.4
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
-.+++.++..+|.|+-++.++.-| +.+.|++++....+.+..+.. .......+.......+-++.+....-.+|++
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp---w~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP---WQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc---chhcceecccCCCCceeEEecCcchhhhhhh
Confidence 456777889999999999888776 677788655555555544332 2233334444444666677777777778887
Q ss_pred CCCCC--CceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 314 SNLDK--APLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 314 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
..+.. ....+.+|...++.+.|.+.....+++++.|-.+..||++.......
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y-------------------------- 152 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY-------------------------- 152 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee--------------------------
Confidence 65443 44567899999999999976689999999999999999887543221
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 471 (612)
.|+.- ....+.++|+-....+.+.+..
T Consensus 153 --s~~~w---------------------------------------------------~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 153 --STSSW---------------------------------------------------RSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred --eeecc---------------------------------------------------cccCceeeecccCcchhhhccC
Confidence 11110 0123446666544444445666
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCc
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 550 (612)
..|++||++.+. .+...+++|...|+.++|.. -...+.+.+.|++|+.||........+.......+|..-++.|=|.
T Consensus 180 ~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 180 NDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred CceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 789999998776 34677888999999999876 3456788899999999998776554344444566777777777433
Q ss_pred --EEEEeecCcEEE---------EEEccCCCcceeeeecccccCeeeEEEe-c----------CceEEEccCCCeEEEEE
Q 007229 551 --MVATGSIDTCVI---------IYEIGKPASSRITIKNAHLGGVYGVAFM-D----------DFNVVSSGEDACIRVWR 608 (612)
Q Consensus 551 --~l~s~~~d~~i~---------iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~----------~~~l~s~~~d~~i~~w~ 608 (612)
++.---.+..+. .|+..+.. +.+..+.||.+.|....|- . +-.|++-+.|..+++|.
T Consensus 259 g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~-~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 259 GYCIMPMVGGNMVPQLRCENSDLEWNVFDLN-TPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred eeEeccccCCeeeeeccccchhhhhccccCC-cceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 332111122343 35555534 7789999999999776664 1 12499999999999999
Q ss_pred ecc
Q 007229 609 LAT 611 (612)
Q Consensus 609 ~~~ 611 (612)
+..
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 864
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-09 Score=88.79 Aligned_cols=235 Identities=14% Similarity=0.179 Sum_probs=139.9
Q ss_pred EEEccCCCEEEEecCCEEEEEeCCCC--ceee---EeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 24 ISGNPKTDTILYCNGRSVLIRYLDKP--LHVE---FYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 24 ~~~s~d~~~l~~~~~~~i~i~~~~~~--~~~~---~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
++.++||+.||...+..|.|...+.. ..+. ..+...-.=..++||||+.+||.+...|+|+++|+.... +...-
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC
Confidence 67899999999999999999877643 1112 222333455789999999999999999999999998755 33222
Q ss_pred eec------CCCeEEEEECCCC------CEEEEEeCCCCeeeEEEEEec-----CCceeeeec---cCCceEEEEEEcCC
Q 007229 99 KVL------SGRIDDLQWSPDG------LRIVACGDGKGKSFVRAFMWD-----SGTTVGDFD---GHSRRVLSCEFKPT 158 (612)
Q Consensus 99 ~~~------~~~i~~~~~s~~~------~~l~~~~~~~~~~~i~i~~~~-----~~~~~~~~~---~~~~~v~~~~~~~~ 158 (612)
..+ ...|..+.|.+-. ..|++....+. ++-+... ..+..+.+. .+...|.++.++|.
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~---L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ---LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccce---eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 222 2356677775532 13444444331 2333332 223334432 35779999999999
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE--EEEEcCC------cEEEEecCCCCeeeeeec
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL--ISVSSDR------KGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l--~~~~~dg------~i~vwd~~~~~~~~~~~~ 230 (612)
.+.+++.|.....-..+ +.....+++-..-.+..+. ++...|+ +-.+|.+-+.+....
T Consensus 159 h~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~--- 224 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR--- 224 (282)
T ss_pred CCEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec---
Confidence 99545444443310000 0111222222222221111 1122121 123344332222211
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
.......|..|..+|||+.|++...+|.|.+|++ ..-++...+...
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i----PsL~~~~~W~~~ 270 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI----PSLRLQRSWKQD 270 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEec----Ccchhhcccchh
Confidence 1245678999999999999999999999999999 777776666544
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-11 Score=98.04 Aligned_cols=160 Identities=12% Similarity=0.209 Sum_probs=112.1
Q ss_pred ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc-ccceeeccc-----cCceEEEEEcCC-CcEEEEEcCCCeEE
Q 007229 447 IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL-TEEMVLEKH-----RGAITVIQYSPD-VSMFASADGNREAI 519 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~-----~~~i~~~~~s~~-~~~l~~~~~d~~i~ 519 (612)
-.|...+.++.|..|.+.++++ .|=.|.+|+++-... ..+..++.| ..-|++..|+|. ...+...+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3477889999999999888765 456788998753221 011222333 346899999994 45666777889999
Q ss_pred EEecCCccee------e---------ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc--
Q 007229 520 VWDRVSKEVK------L---------NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG-- 582 (612)
Q Consensus 520 iwd~~~~~~~------~---------~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~-- 582 (612)
+-|++...+. . ..+.+-...|..+.|+++|+++++-+.- +++|||+.... .++.+..-|..
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k-~pikTi~~h~~l~ 325 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAK-NPIKTIPMHCDLM 325 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccccc-CCceeechHHHHH
Confidence 9999843321 0 0112223568889999999999987654 69999999855 77776654432
Q ss_pred ----------Ce---eeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 583 ----------GV---YGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 583 ----------~v---~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
.| ..+.|| |++.+++|+..+..-+|-.
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 22 457889 8999999998887777753
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=110.07 Aligned_cols=284 Identities=13% Similarity=0.163 Sum_probs=187.6
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-------CeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-------FKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
.+..+.+|+..|..++--.+.+ -+++++.|++|++|.++. ..+..+++.|..+|.++.|-.+-+++++ .|
T Consensus 727 rL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 4567899999999987766666 499999999999998653 3467788999999999999999887775 47
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEE-eCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTV-SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
|.|.+||.--++.+...... ...+.+..+...+ +...++.+ +...+++++|. ...+....++..+
T Consensus 804 ~giHlWDPFigr~Laq~~da-pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da----Rsce~~~E~kVcn------- 871 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDA-PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA----RSCEWTCELKVCN------- 871 (1034)
T ss_pred CcceeecccccchhHhhhcC-cccCCCceeEecccCcchheeeeccchhhheeeec----ccccceeeEEecc-------
Confidence 89999999888877654322 2222333333334 33444444 66789999998 6666555544332
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
..+....+.+++..+. ++.++.+-.+|.|.+.|.++++.+.....
T Consensus 872 ----------------------------------a~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 872 ----------------------------------APGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred ----------------------------------CCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 1234455666666632 88899999999999999999987775554
Q ss_pred cccceEEEEe-eccEEEEecCCCeEEE-EecCCCCCCccceeccCCCcceeee-cCCCCcEEEEEeeccEEEee------
Q 007229 369 YDARIKCLAA-VEEVIFTAGFDNKVWR-VPLCEGECGDAEHIDVGSQPLDLSL-ALSSPELALVSTESGVILLD------ 439 (612)
Q Consensus 369 ~~~~i~~~~~-~~~~l~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------ 439 (612)
..-....++. .++.++....|..+.+ |-...+... .....++....| ..-++.++.....+.+.++.
T Consensus 917 mecdllqlaapsdq~L~~saldHslaVnWhaldgimh----~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~h 992 (1034)
T KOG4190|consen 917 MECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMH----LQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELH 992 (1034)
T ss_pred ccchhhhhcCchhHHHHhhcccceeEeeehhcCCeee----eccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhh
Confidence 4444444444 5556666677777776 765544321 222222222222 22344555555555555554
Q ss_pred ---cccceeeecccceEEEEEEccCCCeEEEEecCCeEEE
Q 007229 440 ---SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHI 476 (612)
Q Consensus 440 ---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 476 (612)
+-..++.-+.++..++++.-|-+.-+..|.+.|.|.+
T Consensus 993 a~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 993 AESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2223333446677888998887777788888888765
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=110.36 Aligned_cols=282 Identities=16% Similarity=0.247 Sum_probs=187.5
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce------eeeeeeecCCCeEEEEECCCCCEEEEEeCCCC
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV------LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG 125 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 125 (612)
+..+.||+..|.+++--.+.+-+++++.|.+|++|.+..... ...+...|+.+|..+.|..+-++++++...
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g-- 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG-- 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc--
Confidence 345789999999998888888899999999999999874221 345677899999999999999999887543
Q ss_pred eeeEEEEEec--CCceeeeecc--CCceEEEEEEcC--CCCEEEEEeecCCeEEEEeCCCCeeeeccc-----ccccceE
Q 007229 126 KSFVRAFMWD--SGTTVGDFDG--HSRRVLSCEFKP--TRPFRIATCGEDFLVNFYEGPPFKFKLSHR-----EHSNFVN 194 (612)
Q Consensus 126 ~~~i~i~~~~--~~~~~~~~~~--~~~~v~~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~ 194 (612)
+..|+ .++++..... ..+.+..+..-| +...+++.|+...+|+++|.+.++....++ +.+.-+.
T Consensus 806 -----iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 806 -----IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred -----ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 45555 6666654321 112222232222 344345555888999999999887665543 4556789
Q ss_pred EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE-EEeecCCCCCee
Q 007229 195 CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV-WEILEDGSGGRV 273 (612)
Q Consensus 195 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i-w~~~~~~~~~~~ 273 (612)
+++..+.|+.++.+-..|.|.+.|.++|+.+.... ........++ .|..+.++....|.++.+ |.. ..+..
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr---pmecdllqla-apsdq~L~~saldHslaVnWha----ldgim 952 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWR---PMECDLLQLA-APSDQALAQSALDHSLAVNWHA----LDGIM 952 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCC---cccchhhhhc-CchhHHHHhhcccceeEeeehh----cCCee
Confidence 99999999999999999999999999999887763 3333344443 344556777777888888 876 55555
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC---Cceeec--CcccceeEEEEEecCCcEEEEEec
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK---APLSFS--GHVKNVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~ 348 (612)
..+.+.++. ...-+..-+..++....++.+.+|.-..... .+..++ ...+..++++..+- +..++.|..
T Consensus 953 h~q~kpppe-----pahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL-N~afLaGne 1026 (1034)
T KOG4190|consen 953 HLQDKPPPE-----PAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL-NCAFLAGNE 1026 (1034)
T ss_pred eeccCCCCc-----chhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc-cchhhccCC
Confidence 444433321 1111222266788888888888886332211 111121 12344555555532 345566777
Q ss_pred CCcEEE
Q 007229 349 DGAIIK 354 (612)
Q Consensus 349 dg~i~~ 354 (612)
.|.|.+
T Consensus 1027 ~G~IaL 1032 (1034)
T KOG4190|consen 1027 HGAIAL 1032 (1034)
T ss_pred CCceee
Confidence 777654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-08 Score=86.80 Aligned_cols=253 Identities=15% Similarity=0.210 Sum_probs=166.9
Q ss_pred CceeEEEEcc-CCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceE--EEEECCCCCEEEEee-----CcCeEEEeec
Q 007229 19 GRGILISGNP-KTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVT--VARYSPNGEWIASAD-----VSGSVRIWGT 88 (612)
Q Consensus 19 ~~v~~~~~s~-d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~--~~~~s~d~~~las~~-----~d~~i~iwd~ 88 (612)
.+...++.+| +...++++. +....+||..+++..+.+....+.-. .-+||+||++|.+.- ..|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4566899999 566666665 67999999999998877654333222 468999999999863 4578999999
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
..+-....++..|.-.-..+.+.|||+.|+++-..= --.-++++ ..|-....
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI------~Thpd~GR----------------------~kLNl~tM 136 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI------ETHPDSGR----------------------AKLNLDTM 136 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC------ccCcccCc----------------------eecChhhc
Confidence 955446668888888889999999998888764331 00111111 12333344
Q ss_pred CCeEEEEeCCCCeeeec--c--cccccceEEEEECCCCCeEEEEEcCCc-------EEEEecCCCCeeeeeec----cCC
Q 007229 169 DFLVNFYEGPPFKFKLS--H--REHSNFVNCIRFSPDGSKLISVSSDRK-------GLIYDGKSGEKIGEFSS----EDG 233 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~--~--~~~~~~v~~~~~s~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~----~~~ 233 (612)
+.++..-|..+|+.+.. + ..|...|..+++.++|..++..-..|. +-+++ .++.+..+.. ...
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRR 214 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHh
Confidence 44555566667776655 4 347788999999999976655443332 33443 3333333321 113
Q ss_pred ccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 234 HHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
..+.+-+|++++++.++++.+ ..+.+.+||. .+++.+....... .+++....+.+++.+..|.+....
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~----~tg~~~~~~~l~D-------~cGva~~~~~f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA----ATGRLLGSVPLPD-------ACGVAPTDDGFLVSSGQGQLIRLS 283 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEEC----CCCCEeeccccCc-------eeeeeecCCceEEeCCCccEEEcc
Confidence 457789999999998886665 4578999999 8999988776653 344444444455555555544433
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=112.05 Aligned_cols=294 Identities=16% Similarity=0.197 Sum_probs=192.3
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC--CCeEEEEECCCC---CEEEEEeCCCCeeeEEEE
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS--GRIDDLQWSPDG---LRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~s~~~---~~l~~~~~~~~~~~i~i~ 132 (612)
-.+++.++.++|-|+-+|.++.-| +.+-|+...-... ..-.|. -.|-...|+|.. .++++.+.... .+|
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts~qka----iiw 96 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA----IIW 96 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCc-eeeeccCcchhcceecccCCCCceeEEecCcchh----hhh
Confidence 356788999999999999998776 5566766543222 222232 356778888754 34555555542 255
Q ss_pred Eec---CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-eeecccccccceEEEEECCCCCeEEEE
Q 007229 133 MWD---SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 133 ~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
.+. ....-..+.+|...|+.+-|+|+.+-++++++.|-.+..||+++.. ..............++|+.....+++.
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 544 3344556789999999999999998899999999999999988754 344444455567788998755555556
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc----c
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS----N 283 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~ 283 (612)
+..+.|++||++.|...... .++|...|..+.|.. ....+.+.+.||+|++||........+...+-....- .
T Consensus 177 shg~~i~vwd~r~gs~pl~s--~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCS--LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred ccCCceEEEeccCCCcceEE--ecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 77788999999887654333 247888899998875 3345888899999999998443222222211111100 0
Q ss_pred ccceeeeeeec-cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE-e--------cCCcEEEEEecCCcEE
Q 007229 284 AVEDMLVGCLW-QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-K--------ISQQTILSSSYDGAII 353 (612)
Q Consensus 284 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~--------~~~~~l~~~~~dg~i~ 353 (612)
+.......+.. .++.+.....++....|+......++..+.||...|....|- . ...-.|++-+.|..++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 00000111111 122222333344555566667778899999999988776665 1 1134789999999999
Q ss_pred EEEcCC
Q 007229 354 KWIRGV 359 (612)
Q Consensus 354 ~wd~~~ 359 (612)
+|-+..
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 997654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-07 Score=83.74 Aligned_cols=222 Identities=14% Similarity=0.101 Sum_probs=146.2
Q ss_pred EEEEcc-CCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEEC-CCCCEEEEeeCcCeEEEeecCCCceeeeeee
Q 007229 23 LISGNP-KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYS-PNGEWIASADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 23 ~~~~s~-d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s-~d~~~las~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
+++|.+ ++.++++-. ++.|+.|+..+++... +.... ...+++. ++++++++. .. .+.++|..+++. .....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEE-TT-CEEEEETTTTEE-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEE-cC-ceEEEecCCCcE-EEEee
Confidence 578898 555555544 7899999999876644 22222 6677777 776665554 44 456669988863 32333
Q ss_pred e-----cCCCeEEEEECCCCCEEEEEeCCCCee-e--EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 100 V-----LSGRIDDLQWSPDGLRIVACGDGKGKS-F--VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 100 ~-----~~~~i~~~~~s~~~~~l~~~~~~~~~~-~--i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
. .....+.+++.|+|+..++........ . -.++.++....+..+...-.....++|+|+++.++++-+..+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccce
Confidence 2 334688999999999777665432110 0 3577777554444444445667899999999976778888899
Q ss_pred EEEEeCCCCee-------eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 172 VNFYEGPPFKF-------KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 172 i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
|..+++..... ...+....+....+++.++|++.++....+.|.++|.+ |+.+..+..+ ...+++++|.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fg 233 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFG 233 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEE
Confidence 99998753211 11222223358889999999977777778999999976 8888888432 3478999995
Q ss_pred -cCCCEEEEEe
Q 007229 245 -PDGKKVLTVS 254 (612)
Q Consensus 245 -~~~~~l~~~~ 254 (612)
++.+.|++.+
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 5666665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-08 Score=104.44 Aligned_cols=157 Identities=14% Similarity=0.072 Sum_probs=105.1
Q ss_pred EEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccce------eecc------ccCceEEEEEcCCCcE-EEEEcCCCeE
Q 007229 453 VTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEM------VLEK------HRGAITVIQYSPDVSM-FASADGNREA 518 (612)
Q Consensus 453 i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~------~~~~------~~~~i~~~~~s~~~~~-l~~~~~d~~i 518 (612)
...++++| ++.++++...++.|++||..++...... ...+ .-.....++++|+++. +++-..++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 35688888 4555566667788999988766431000 0001 1123567999999884 4555667999
Q ss_pred EEEecCCcceeeec------------ccc--------cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec
Q 007229 519 IVWDRVSKEVKLNN------------MLF--------HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 519 ~iwd~~~~~~~~~~------------~~~--------~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
++||+.++...... +.. .-.....++++++|+++++-..+++|++||..+ + .. ..+.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g-~v-~tia 841 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-K-RV-TTLA 841 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-C-eE-EEEe
Confidence 99999876532110 000 011246889999999888888999999999987 3 22 2221
Q ss_pred --------------ccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 579 --------------AHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 579 --------------~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
+.-.....++++ +++.+++-+.++.|++||++++
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 122356789999 8888888889999999999763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.8e-09 Score=98.31 Aligned_cols=370 Identities=12% Similarity=0.104 Sum_probs=208.1
Q ss_pred ceeEEEEccCCCEEEEec-----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 20 RGILISGNPKTDTILYCN-----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
..+-.+|+|...++|+++ +|+|.||- ++|++.+-.. -.-.+++++|+|..-.||.|-.-|.+.+|...+.+ .
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-T 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce-e
Confidence 445678999999999986 58888874 5566554332 23345679999999999999999999999999887 5
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee--ccCC--ceEEEEE----------------
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF--DGHS--RRVLSCE---------------- 154 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~--~~v~~~~---------------- 154 (612)
......|..+|..+.|||+|..|+++..-+ .+.+|.++.-..+... -.|. +.++-++
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g---~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKa 170 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPG---SVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKA 170 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCc---eeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhh
Confidence 556778999999999999999999988776 5677776621111110 0010 0111111
Q ss_pred ---------------------------EcCCCCEEEEEeecCCeEEEEeCCCC---------------------------
Q 007229 155 ---------------------------FKPTRPFRIATCGEDFLVNFYEGPPF--------------------------- 180 (612)
Q Consensus 155 ---------------------------~~~~~~~~l~~~~~d~~i~~wd~~~~--------------------------- 180 (612)
=.|+|. .+..++.+|+|+--|-...
T Consensus 171 aVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~-~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 171 AVTGDESALDEPFNWKESLAERSDEKSGVPKGT-EFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIE 249 (1416)
T ss_pred hccCchhhhcccccCccchhhccccccCCCCCc-EEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEee
Confidence 124454 4777777888776652110
Q ss_pred -------------eee----ecc----c-----------------------ccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 181 -------------KFK----LSH----R-----------------------EHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 181 -------------~~~----~~~----~-----------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
... ..+ . .....+.|++++..+..|..|...|.+.+
T Consensus 250 ~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~ 329 (1416)
T KOG3617|consen 250 FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTI 329 (1416)
T ss_pred eceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEE
Confidence 000 000 0 01235889999999989999999999999
Q ss_pred EecCCC-------CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE--------------eecCCCCCeeEe
Q 007229 217 YDGKSG-------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE--------------ILEDGSGGRVIK 275 (612)
Q Consensus 217 wd~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~--------------~~~~~~~~~~~~ 275 (612)
|--... .....+.......+.|..+.|.|--..+++.+... +.+.. +.....+..+..
T Consensus 330 w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~-v~ll~E~~l~~~h~~~~~A~q~ss~S~~L~h 408 (1416)
T KOG3617|consen 330 WLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEED-VVLLGENSLTVKHRGKMAAIQTSSNSFTLLH 408 (1416)
T ss_pred eeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhh-eeeeccCchHHHHhhhhHHhhhcCCceEEEe
Confidence 963221 12223322334567899999998665555444332 22221 111111111111
Q ss_pred eeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC-CceeecCcccceeEEEEEecCCcEEEEEecCCcEEE
Q 007229 276 TFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK-APLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIK 354 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 354 (612)
.+.............+-..-...-++.....+|..|++...+. .........-..+.++..+ .+.+..++.+ |.+
T Consensus 409 c~sGv~~~l~~~~~~~gi~l~e~~lvvwNgr~v~~y~lq~SG~la~~~~~tF~cet~~la~~n--qN~ycies~~--Vfv 484 (1416)
T KOG3617|consen 409 CTSGVSQDLKLSIPSAGICLGEKQLVVWNGRTVVTYDLQTSGSLATIQCTTFSCETTSLAIVN--QNLYCIESDK--VFV 484 (1416)
T ss_pred eccchhhhhhhccchhhheeccceEEEEcCceEEEEEecccchhHHHhhhhhccccchHhHhh--cceEEeccCc--EEE
Confidence 1111100000001111111244556667788889999865442 1112222222223333333 4444444433 333
Q ss_pred EEcCCceeeee-ceecccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 355 WIRGVGYSSKL-EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 355 wd~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
+.+..-....+ ...-.+.+..+...+.+++.....+..+.+|+....
T Consensus 485 rt~qGtv~q~i~~seiEg~~~~ldi~g~~l~v~t~~~~~k~~dvsr~e 532 (1416)
T KOG3617|consen 485 RTLQGTVRQEISLSEIEGVVVLLDIMGELLIVQTVSTVAKRLDVSRAE 532 (1416)
T ss_pred EecchhhhhhccchhccCceehhhhccceeEEeehHHHHHHhhhhhhc
Confidence 33332211111 111445555666678888888777777777766544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-10 Score=89.23 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=124.5
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCC------------ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKP------------LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~------------~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
.++.+.++.+-.++....++.+.....-++ .++..+..|+++=.+-+.+--+..++++..||.+.+.+
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 366777776655443333444433332222 12333444555544555555677899999999999999
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee--eEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEE
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS--FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIAT 165 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 165 (612)
.+....+..........-.+.+....+..+.+.+-..-.. ...+|..+..+.+..-..-...|.+++-+|..+.++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 8874333322222222222333344455555443221000 01223333222111112223459999999998889999
Q ss_pred eecCCeEEEEeCCCCeeeec-ccccccceEEEEECC-CCCeEEEEEcCCcEEEEecCC
Q 007229 166 CGEDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 166 ~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~ 221 (612)
|+.||.+-+||.+....... ++.|+.++..+.|+| ++..|+++++||.+.-||..+
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999998755444 778999999999999 567899999999999999654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-10 Score=95.88 Aligned_cols=165 Identities=17% Similarity=0.165 Sum_probs=118.8
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee--eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN--EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT 138 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~ 138 (612)
.+..+..+|.+++||.+..+....++++.......+ ....-...-+++.|..+......+-..++...+.++..+. .
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-G 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-c
Confidence 344567888999999998888877887765542111 1112233445566666665555554444332333443333 4
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec-ccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+...+-||-..++.++++||++ .++++..|..|++-....-..+.. .-||..-|..++.-++. .|++++.|+++++|
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLW 220 (390)
T ss_pred CcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEE
Confidence 4455678999999999999999 599999999999988776655555 45899999999998654 58999999999999
Q ss_pred ecCCCCeeeee
Q 007229 218 DGKSGEKIGEF 228 (612)
Q Consensus 218 d~~~~~~~~~~ 228 (612)
|+.+|+.+.++
T Consensus 221 d~~sgk~L~t~ 231 (390)
T KOG3914|consen 221 DITSGKLLDTC 231 (390)
T ss_pred ecccCCccccc
Confidence 99999998776
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.4e-08 Score=90.47 Aligned_cols=300 Identities=12% Similarity=0.033 Sum_probs=179.1
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccc--c--------ceE-EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHS--N--------FVN-CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~--------~v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
.++.++.++.+.-+|.++|+.+....... . .+. .+.. ++..++.++.++.+..+|.++|+.+.....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 47777788899999999998877643221 0 000 1111 355678888899999999999999887732
Q ss_pred cCCccccEEE-EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 231 EDGHHGSIYA-VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 231 ~~~~~~~v~~-i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
...+.+ ... .+..++.+..+|.+.-+|. .+++.+-.+..................++.++.++.+|.+.
T Consensus 149 ----~~~~~ssP~v--~~~~v~v~~~~g~l~ald~----~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 149 ----AGEALSRPVV--SDGLVLVHTSNGMLQALNE----SDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVS 218 (394)
T ss_pred ----CCceecCCEE--ECCEEEEECCCCEEEEEEc----cCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEE
Confidence 222222 112 2345667778899999999 88888877765321100000111122356788888899998
Q ss_pred EEEcCCCCCCceeecCcc---c------ce-eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEee
Q 007229 310 IFSASNLDKAPLSFSGHV---K------NV-STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAV 379 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~---~------~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~ 379 (612)
.++..+.......-.... . .+ ..... . +..++.++.+|.+..+|..+++..-.... .....+...
T Consensus 219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~--~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~ 293 (394)
T PRK11138 219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-V--GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVD 293 (394)
T ss_pred EEEccCChhhheeccccCCCccchhcccccCCCcEE-E--CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEE
Confidence 888766543322111000 0 00 01111 2 56777788899999999998876543321 112234557
Q ss_pred ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc
Q 007229 380 EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA 459 (612)
Q Consensus 380 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 459 (612)
++.++.++.++.+..+|..+++.. |..... . .....+..+
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~----------------------------------W~~~~~----~-~~~~~sp~v- 333 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVEL----------------------------------WSQSDL----L-HRLLTAPVL- 333 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEE----------------------------------Eccccc----C-CCcccCCEE-
Confidence 888888899999999998776532 110000 0 000111111
Q ss_pred cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEE-EEEcCCCcEEEEEcCCCeEEEEec
Q 007229 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITV-IQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 460 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
.+.++++++.+|.++..|..+++......+ ....+.+ ..+ .+..|..++.||.++.+++
T Consensus 334 -~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~--~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 -YNGYLVVGDSEGYLHWINREDGRFVAQQKV--DSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEEc--CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 245788899999999999999987333222 2222221 122 3447888889999988764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-08 Score=82.59 Aligned_cols=237 Identities=13% Similarity=0.041 Sum_probs=156.1
Q ss_pred eEEEEcc-----CCCEEEEec-CCEEEEEeCCCCce-eeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce
Q 007229 22 ILISGNP-----KTDTILYCN-GRSVLIRYLDKPLH-VEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 22 ~~~~~s~-----d~~~l~~~~-~~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~ 93 (612)
..+.|-| ...+||.++ .|..-+|...+.+. .+....|...|+-+.=.-| .-.+..++.|.++++.+++.+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s- 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS- 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-
Confidence 3455655 445777775 68999999986543 3334455554443322222 2245667788889999888765
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeee--eccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGD--FDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
.........-.+.++++++|++++++.++... +-.+..+ .++.+.. ....++.-.+..|+.... .+|++..||
T Consensus 150 ~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~---Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg 225 (344)
T KOG4532|consen 150 NKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRR---VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDG 225 (344)
T ss_pred ccceeeccccceeeeEEcCCCceEEEecCCCc---ceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCC
Confidence 22222222234889999999999999998873 3444444 3333322 333445567788998887 699999999
Q ss_pred eEEEEeCCCCeeee-----cccccccceEEEEECCCCC--eEEEEEcCCcEEEEecCCCCeeeeeeccC----Ccc-ccE
Q 007229 171 LVNFYEGPPFKFKL-----SHREHSNFVNCIRFSPDGS--KLISVSSDRKGLIYDGKSGEKIGEFSSED----GHH-GSI 238 (612)
Q Consensus 171 ~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~-~~v 238 (612)
++.+||++...... +-..|.+.+..+.|++.|. +|+..-.-+.+.+-|+++++..+.+.... .|. ..|
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~i 305 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHI 305 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccc
Confidence 99999988754332 2346899999999998663 45554556789999999988776653321 222 347
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 239 YAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
..-.|+.++.-+.+..++ .+.-|++
T Consensus 306 fgt~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 306 FGTNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred ccccccCCCcccccccch-hhheeec
Confidence 777888777766666544 4556665
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.9e-10 Score=91.09 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=82.3
Q ss_pred eEEEEEEccC-CCeEEEEecCCeEEEEEccCcccc------cce--------eeccccCceEEEEEcCCCcEEEEEcCCC
Q 007229 452 TVTACAIAPD-GSEAIVGGQNGKLHIYSISGNTLT------EEM--------VLEKHRGAITVIQYSPDVSMFASADGNR 516 (612)
Q Consensus 452 ~i~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~------~~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 516 (612)
-|++..|+|. ...+...+..|.|++-|++...+- ... -+.+-...|..+.|+++|+++++-+. -
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-l 301 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-L 301 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-c
Confidence 4778888885 356667788899999999844320 001 11223356889999999999998876 5
Q ss_pred eEEEEecCCcceeeecccccc------------cce---eEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 517 EAIVWDRVSKEVKLNNMLFHT------------ARI---NCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 517 ~i~iwd~~~~~~~~~~~~~~~------------~~i---~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+++|||....+....+..-|. ..| ..+.||-|.+.+.+|+.....-+|-..+
T Consensus 302 tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 302 TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 899999987765444443332 222 2478999999999999988888887554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.8e-08 Score=90.67 Aligned_cols=307 Identities=9% Similarity=-0.021 Sum_probs=179.8
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeE------EEEECC--CCCEEEEEeCCCCeeeEEEEEecCCceeee
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRID------DLQWSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGD 142 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~------~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~ 142 (612)
+..+..++.+|.+.-+|..+++.+.+.-........ .+.-.| ++..++.++.++ .+..++.++|+.+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g---~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKG---QVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCC---EEEEEECCCCCCccc
Confidence 456777777888999999888854332111100000 000011 344555555554 345555668888887
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEE-EEECC--CCCeEEEEEcCCcEEEEec
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNC-IRFSP--DGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~-~~~s~--~~~~l~~~~~dg~i~vwd~ 219 (612)
.+............ ++ +++.+..++.+.-+|.++|+.+............ ..-+| .+..++.++.+|.+..+|.
T Consensus 146 ~~~~~~~~ssP~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAGEALSRPVVS-DG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCCceecCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 76543322222222 33 4777888999999999999988776432111100 00112 1335777788999999999
Q ss_pred CCCCeeeeeeccCCcc-c---cEEEEEEec--CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 220 KSGEKIGEFSSEDGHH-G---SIYAVSWSP--DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~-~---~v~~i~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
++|+.+.......... . ....+.-+| .+..++.++.+|.+..+|. .+++.+-...... .....
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~----~tG~~~W~~~~~~-------~~~~~ 291 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL----RSGQIVWKREYGS-------VNDFA 291 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC----CCCCEEEeecCCC-------ccCcE
Confidence 9998766542111100 0 011111122 2456777778899999999 7787665443221 11233
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
..++.+++++.+|.+..+|..+.......-........+.... +..++.++.+|.+...|..+++...........+
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~ 368 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGF 368 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 4578899999999999999766543222111011111222222 6788899999999999999988766544322223
Q ss_pred E-EEEeeccEEEEecCCCeEEEEec
Q 007229 374 K-CLAAVEEVIFTAGFDNKVWRVPL 397 (612)
Q Consensus 374 ~-~~~~~~~~l~~~~~~~~i~~~~~ 397 (612)
. ...+.++.++.++.+|.+..++.
T Consensus 369 ~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 369 LSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred eeCCEEECCEEEEEeCCceEEEEeC
Confidence 2 22346778999999999888764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-08 Score=83.78 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=122.9
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEecc-------CCCceEEEEECCCC---C---EEEEeeCcCeEEE
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGE-------HGYPVTVARYSPNG---E---WIASADVSGSVRI 85 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~-------h~~~v~~~~~s~d~---~---~las~~~d~~i~i 85 (612)
+-.-++||||+.+||++. .|+|.++|+....+. .+.. -...|..+.|.+.. + .|..-..+|.++=
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 345699999999999998 799999999864433 3322 23567777776632 1 3555557888777
Q ss_pred eecCCC--ce--eeeeee---ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC
Q 007229 86 WGTHNG--FV--LKNEFK---VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 86 wd~~~~--~~--~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (612)
|-+..+ +. ....+. .+..+|.++.|+|..+.|+++|..... .+. -++....+++-..-.+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~---------~~~----s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ---------DGM----SKASSCGLTAWRILSD 190 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC---------Ccc----ccccccCceEEEEcCC
Confidence 765332 11 222222 246799999999999999988866521 000 0112223333333333
Q ss_pred CCEE-EEEeecCCe------EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 159 RPFR-IATCGEDFL------VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 159 ~~~~-l~~~~~d~~------i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.+|. .++...|+. -.+|.+.+.+...........|..|..||||+.|++...+|.|.+|++.+-+.....
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 3332 222222221 234444443333222345678999999999999999999999999999887777666
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-08 Score=82.84 Aligned_cols=156 Identities=12% Similarity=0.067 Sum_probs=110.0
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccce-eeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee-
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM-VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL- 530 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~- 530 (612)
..++++++|++++++.+....|..|.++........ ....-+..-.+..|+.....+|++..||++.|||++......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 678999999999999999999999999765432222 333344455677899999999999999999999998765432
Q ss_pred ---ecccccccceeEEEecCCCc--EEEEeecCcEEEEEEccCCCcceeee------ecccccC-eeeEEEe-cCceEEE
Q 007229 531 ---NNMLFHTARINCLAWSPSST--MVATGSIDTCVIIYEIGKPASSRITI------KNAHLGG-VYGVAFM-DDFNVVS 597 (612)
Q Consensus 531 ---~~~~~~~~~i~~~~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~h~~~-v~~~~~~-~~~~l~s 597 (612)
..-..|.+.+..+.|++-|. +|...-.-+.+.+-|+++.. .+... ...|... |..-.|+ ++..+.+
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~-~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV-NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc-eeeEEecCccccccccccccccccccCCCccccc
Confidence 22344889999999998664 45555455679999998833 22211 2234433 8888888 6666666
Q ss_pred ccCCCeEEEEEec
Q 007229 598 SGEDACIRVWRLA 610 (612)
Q Consensus 598 ~~~d~~i~~w~~~ 610 (612)
..++ .+.-|++.
T Consensus 320 ~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 320 KNEL-QGAEYNIL 331 (344)
T ss_pred ccch-hhheeecc
Confidence 5554 34555554
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-06 Score=68.80 Aligned_cols=147 Identities=9% Similarity=-0.037 Sum_probs=97.7
Q ss_pred cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 156 KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 156 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
.++.+.+++.|+..+.+.--|..+|+...... -..++.+-+.- -|++++.|+..|.+++.+.++|.....+.. .
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~ 92 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----L 92 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee----h
Confidence 34444578889999999999999998876521 22333333322 477899999999999999999988887732 2
Q ss_pred ccEE-EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 236 GSIY-AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 236 ~~v~-~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
+.|. .....+++..+..++.|+..+..|. .+..++...+.....- ..-.+...+..++++...|.+.--...
T Consensus 93 ~~vk~~a~~d~~~glIycgshd~~~yalD~----~~~~cVykskcgG~~f---~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDP----KTYGCVYKSKCGGGTF---VSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred hhhccceEEcCCCceEEEecCCCcEEEecc----cccceEEecccCCcee---ccceecCCCceEEEEeccceEEEEccC
Confidence 2222 2345668999999999999999999 7777776654432110 011122225667777777766655543
Q ss_pred C
Q 007229 315 N 315 (612)
Q Consensus 315 ~ 315 (612)
.
T Consensus 166 ~ 166 (354)
T KOG4649|consen 166 P 166 (354)
T ss_pred C
Confidence 3
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=86.00 Aligned_cols=151 Identities=16% Similarity=0.231 Sum_probs=103.0
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceeec-cccCceEEEEEcCCCcEEEEEc-----CCCeEEEEecCCcceee
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAITVIQYSPDVSMFASAD-----GNREAIVWDRVSKEVKL 530 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~iwd~~~~~~~~ 530 (612)
+.+.-+..++++..||.+.+++.+. .+......+ .|.+. .+.++...+.++.++. .-+..+.|+++..+.+.
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred cccccCCceEecCCCceEEEEechH-HHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 3444567799999999999999876 221111111 12211 1222333444444432 12356677776655443
Q ss_pred ecccccccceeEEEecCCCc-EEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe--cCceEEEccCCCeEEEE
Q 007229 531 NNMLFHTARINCLAWSPSST-MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM--DDFNVVSSGEDACIRVW 607 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~~~d~~i~~w 607 (612)
.... ....|++++-+|..+ .+++|+.||.+-+||.+... .....++.|..++..+-|. ++..|+++++||.+.-|
T Consensus 174 ~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 174 PSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 2222 223499999999654 56788899999999999855 7788899999999999999 77889999999999999
Q ss_pred Eecc
Q 007229 608 RLAT 611 (612)
Q Consensus 608 ~~~~ 611 (612)
|-++
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9763
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-05 Score=77.04 Aligned_cols=258 Identities=11% Similarity=0.163 Sum_probs=163.6
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecC---CEEEEEeCC-CCce----e-eEeccCCCceEEEEECCCC
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNG---RSVLIRYLD-KPLH----V-EFYGEHGYPVTVARYSPNG 71 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---~~i~i~~~~-~~~~----~-~~~~~h~~~v~~~~~s~d~ 71 (612)
|=++.+...-...+..+.+.-.+..++|.-..++++.. -.+.++.++ .++. . .........|.++.|..++
T Consensus 1 MkNL~l~~~~~f~~~~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~ 80 (1265)
T KOG1920|consen 1 MKNLKLRYMKTFEIVAGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADT 80 (1265)
T ss_pred CCceeeeeeeeecccCCCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEeccc
Confidence 44455555555666666665666777777666666631 122233222 2221 0 1112234689999999999
Q ss_pred CEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CC------------
Q 007229 72 EWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SG------------ 137 (612)
Q Consensus 72 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~------------ 137 (612)
.-++.+..+|.|.+-|.++.. ......-..+|.+++||||++.++..+..... .+.-.+|+ ..
T Consensus 81 ~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tl-l~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 81 NSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTL-LFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred ceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEE-EEEeccccchhccccccccccccc
Confidence 999999999999999988875 33455567899999999999999988876632 11111121 11
Q ss_pred -------ceeeeeccCC---------------------ceEEEEEEcCCCCEEEEEe----ecC-CeEEEEeCCCCeeee
Q 007229 138 -------TTVGDFDGHS---------------------RRVLSCEFKPTRPFRIATC----GED-FLVNFYEGPPFKFKL 184 (612)
Q Consensus 138 -------~~~~~~~~~~---------------------~~v~~~~~~~~~~~~l~~~----~~d-~~i~~wd~~~~~~~~ 184 (612)
+.-..|.|.. +.=+.+.|--||+| +++. ..+ +.|++||-+ |.+..
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~RkirV~drE-g~Lns 235 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGTRKIRVYDRE-GALNS 235 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCceeEEEeccc-chhhc
Confidence 1111222111 11235889999996 5552 223 799999977 54443
Q ss_pred cccccccceEEEEECCCCCeEEEEEc---CCcEEEEecCCCCeeeeeeccCCccc-cEEEEEEecCCCEEEE---EeCCC
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSS---DRKGLIYDGKSGEKIGEFSSEDGHHG-SIYAVSWSPDGKKVLT---VSADK 257 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~---~~~dg 257 (612)
.-....+-=.+++|-|.|..+++... |+.|.++. ++|-....+..+...+. ++..++|+.++..|++ .....
T Consensus 236 ~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 236 TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccccc
Confidence 33333344568999999998887643 56799998 55665555443323333 3999999999998887 44444
Q ss_pred cEEEEEe
Q 007229 258 SAKVWEI 264 (612)
Q Consensus 258 ~i~iw~~ 264 (612)
.|++|..
T Consensus 315 ~v~lwt~ 321 (1265)
T KOG1920|consen 315 LVQLWTT 321 (1265)
T ss_pred eEEEEEe
Confidence 5999998
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-06 Score=75.04 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=130.9
Q ss_pred EEEECC-CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEEC-CCCCEEEEEeCCCCeeeEEEEEecCCceee
Q 007229 64 VARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWS-PDGLRIVACGDGKGKSFVRAFMWDSGTTVG 141 (612)
Q Consensus 64 ~~~~s~-d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~ 141 (612)
+++|.+ ++.++++--..+.|..|+..+++... +. . .....+++. ++++ |+.+...+ +.+++.++++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~-~-~~~~G~~~~~~~g~-l~v~~~~~----~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--ID-L-PGPNGMAFDRPDGR-LYVADSGG----IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EE-S-SSEEEEEEECTTSE-EEEEETTC----EEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--Ee-c-CCCceEEEEccCCE-EEEEEcCc----eEEEecCCCcEEE
Confidence 578888 77777777788999999999986322 22 2 227777787 6654 44455554 3455666664433
Q ss_pred eecc-----CCceEEEEEEcCCCCEEEEEeecC--------CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE-
Q 007229 142 DFDG-----HSRRVLSCEFKPTRPFRIATCGED--------FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS- 207 (612)
Q Consensus 142 ~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~- 207 (612)
.... .......+++.|+|+ +.++.... |.|..++.. ++..... ..-...+.|+|+|+++.|+.
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeec
Confidence 3322 456789999999998 46665433 567777777 4543333 34556789999999997764
Q ss_pred EEcCCcEEEEecCCCCe-e---eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 208 VSSDRKGLIYDGKSGEK-I---GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
-+..+.|..+++..... + ..+.......+..-.+++..+|++.++....+.|.+++. .++.+..+...
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p-----~G~~~~~i~~p 223 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP-----DGKLLREIELP 223 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET-----TSCEEEEEE-S
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC-----CccEEEEEcCC
Confidence 45578888888864322 1 112111122235788999999998887778899999996 48888888766
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=63.53 Aligned_cols=39 Identities=26% Similarity=0.636 Sum_probs=36.6
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
+++++.+.+|.+.|++++|+|++++||+++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-06 Score=78.81 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=123.9
Q ss_pred ccCCCEEEEec----------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 27 NPKTDTILYCN----------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 27 s~d~~~l~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
|||+++++... .+.+.|+|+++++...... ....+....|||||+++|... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 79999999843 3689999999987666433 377899999999999999995 67999999988754333
Q ss_pred eeeec----------------CCCeEEEEECCCCCEEEEEeCCCCe-eeEEEEEecCCceeeeeccCCceEEEEEEcCCC
Q 007229 97 EFKVL----------------SGRIDDLQWSPDGLRIVACGDGKGK-SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 97 ~~~~~----------------~~~i~~~~~s~~~~~l~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
+..+. -+.-..+-|||||++|+....+... ..+.+..+..... .--.+..+.+-.-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccCCCC
Confidence 33330 1123568899999999987654422 1122222221111 00123333332222
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeee-cc----cccccceEEEEECCCCCeEEEEE--cCC---cEEEEecCCCCeeeeee
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKL-SH----REHSNFVNCIRFSPDGSKLISVS--SDR---KGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~-~~----~~~~~~v~~~~~s~~~~~l~~~~--~dg---~i~vwd~~~~~~~~~~~ 229 (612)
.. .. .-.+.++|+.+++... .. ..-...+..+.|+++++.|+..- .+. .+.+.|..+++......
T Consensus 153 ~~-np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~ 227 (353)
T PF00930_consen 153 DP-NP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE 227 (353)
T ss_dssp S--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred Cc-CC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence 21 11 1135667887776532 11 23456688999999998444433 222 36677887766544332
Q ss_pred c-cCCccccEEEEEEe-cCCC-EEEEEeCCCcEEEEEe
Q 007229 230 S-EDGHHGSIYAVSWS-PDGK-KVLTVSADKSAKVWEI 264 (612)
Q Consensus 230 ~-~~~~~~~v~~i~~~-~~~~-~l~~~~~dg~i~iw~~ 264 (612)
. ..+--..-....|. +++. ++.....+|.-++|-+
T Consensus 228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 1 11111122244444 5444 4444446676555555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=91.34 Aligned_cols=139 Identities=12% Similarity=0.228 Sum_probs=112.1
Q ss_pred EEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc----eeeeccccccccee
Q 007229 466 IVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE----VKLNNMLFHTARIN 541 (612)
Q Consensus 466 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~ 541 (612)
++.+.+..+-+-++.++.. ..+. .++.|.++.|...++++..|..+|.|..+|++.+. -....+. |.+.|+
T Consensus 228 fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccc---cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 4445566788999988864 3444 56779999999989999999999999999998762 2223333 899999
Q ss_pred EEEecC-CCcEEEEeecCcEEEEEEccCCCcce---eeeecccccCeeeEEEe---cCceEEEccCCCeEEEEEecc
Q 007229 542 CLAWSP-SSTMVATGSIDTCVIIYEIGKPASSR---ITIKNAHLGGVYGVAFM---DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 542 ~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~h~~~v~~~~~~---~~~~l~s~~~d~~i~~w~~~~ 611 (612)
++..-. ++++|.+.+.+|+|++||.+. . ++ +....+|...-..+-+. .++.++++|+|...|||.++.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~-~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRA-T-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehh-h-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 998777 788999999999999999987 4 55 78889998877777666 456799999999999999874
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-07 Score=85.49 Aligned_cols=309 Identities=15% Similarity=0.109 Sum_probs=175.0
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
|...|.=-+++..+++|+.|+.-|.+.+|+-..++.+.....+..+.+.....+++..++|+++..+ .+.++..+.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g---~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASG---RVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCc---eEEeehhhcc
Confidence 5566767778888999999999999999999998865544445555666777888877777777666 4555555532
Q ss_pred ce---ee--ee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECCCCCeEEE
Q 007229 138 TT---VG--DF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 138 ~~---~~--~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
.+ +. .+ ..|...|++++|++++. .+.+|...|.|..-.+.... ..+.+......|..+.+. ++ +|++
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLV 185 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLV 185 (726)
T ss_pred CCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehH
Confidence 21 11 11 34789999999999999 69999999999998877721 111122344567777665 23 3433
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccc-cEEEEEEecC----CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHG-SIYAVSWSPD----GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~i~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
++.- ...+++.+.+. +..+... ...+ .-...+|.|. .+-.+.++.-| .|+|..+ -.|+.++++.....
T Consensus 186 Stl~-r~~Lc~tE~et-i~QIG~k-~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead---~~G~V~~Thqfk~a 258 (726)
T KOG3621|consen 186 STLT-RCILCQTEAET-ITQIGKK-PRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD---FAGEVIKTHQFKDA 258 (726)
T ss_pred hhhh-hhheeecchhH-HHHhcCC-CcCCccccceEEeeccccCCCceEEEecCC-CceEEee---cceeEEEeeehhhh
Confidence 3322 23455555443 2222111 1111 1334556553 34455555554 7899874 45777777665432
Q ss_pred cccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 283 NAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
...... ..+.+-.+..+.........+.-....+.+.. ...+++-+.-| |+++|.++...
T Consensus 259 la~~p~-----------------p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~--~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 259 LARPPA-----------------PEIPIRSLESPNQRSLPSGTQHLSLSKSSTLH--SDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred hccCCC-----------------CcccCCCcCCccccCCCCCccccccceeEEee--cceEEEeecce-EEEEEeccceE
Confidence 111000 00000000000000001111111112222222 33444444434 77777776655
Q ss_pred eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCC
Q 007229 363 SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~ 400 (612)
..... ....|..++..++.++.-..|+.++...+.+.
T Consensus 319 ~l~se-~~~DI~dVs~~~neiFvL~~d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 319 YLWSE-GGHDILDVSHCGNEIFVLNLDRGLKVESVASR 355 (726)
T ss_pred EEeec-CCCceeEEeecCceEEEEecCCceeEEEeehh
Confidence 54433 56677788888888888888887777666544
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-05 Score=65.65 Aligned_cols=144 Identities=14% Similarity=0.008 Sum_probs=87.3
Q ss_pred EECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc
Q 007229 109 QWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE 188 (612)
Q Consensus 109 ~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 188 (612)
...+|.+.++..+.... .+...+..+|+.+.+-. -..++.+-+.- -|+ .++.|...|.+++.+.++|+....+..
T Consensus 17 VV~~dskT~v~igSHs~--~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSG--IVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred EEecCCceEEEEecCCc--eEEEecCCCCcEEeehh-hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhheeeeee
Confidence 34455555555544433 24444555776665432 22333333333 345 499999999999999999987776553
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEE
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKV 261 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i 261 (612)
-..-=......+++..+..++.|++.+..|..+..++..... ..+...+-+..| ++. |..+...|.+.-
T Consensus 92 ~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc---gG~~f~sP~i~~g~~s-ly~a~t~G~vla 161 (354)
T KOG4649|consen 92 LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC---GGGTFVSPVIAPGDGS-LYAAITAGAVLA 161 (354)
T ss_pred hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc---CCceeccceecCCCce-EEEEeccceEEE
Confidence 332222334567899999999999999999999999888732 222223344555 343 444444454433
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=83.53 Aligned_cols=297 Identities=15% Similarity=0.106 Sum_probs=186.0
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC---CeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCC
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP---FKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKS 221 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~ 221 (612)
|.+.|+.+.-.... .+.+++.||.++.|.-.. -+.+..+..|...|.+++.+.++.++.+.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeehhh--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 66777766555443 699999999999997544 3445557789999999999999998999777 99999999987
Q ss_pred CCeeeeeeccCCccccEEEEEEec-CC--C-EEEEE-eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSP-DG--K-KVLTV-SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~-~~--~-~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
-..+.-+.. ......+.|.. .| . .+++. -.+|.+.++|- ....+
T Consensus 86 ~DminmiKL----~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~----~~d~~----------------------- 134 (558)
T KOG0882|consen 86 FDMINMIKL----VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDG----FGDFC----------------------- 134 (558)
T ss_pred cchhhhccc----ccCCCceEEecCCCCeeeeEEeecccCCCcEEECC----cCCcC-----------------------
Confidence 666544421 11111222222 22 1 23332 34677888875 11110
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
.....-.-|..+|..+.+.+. ++.+++....|.|..|....... ... ..
T Consensus 135 ---------------------q~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~q--fPr---~~---- 183 (558)
T KOG0882|consen 135 ---------------------QDGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQ--FPR---TN---- 183 (558)
T ss_pred ---------------------ccceecccccCceEEEEeecc-ccceeeccccceeEeecCCCccc--Ccc---cc----
Confidence 111222348888888888832 77888888899999997664110 000 00
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
..|.+.... ........+...+++
T Consensus 184 ----------------l~~~~K~eT----------------------------------------dLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 184 ----------------LNFELKHET----------------------------------------DLYGFPKAKTEPTSF 207 (558)
T ss_pred ----------------ccccccccc----------------------------------------hhhcccccccCccce
Confidence 001111100 011111234457899
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccc------------------------------eeecccc-CceEEEEEcCC
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEE------------------------------MVLEKHR-GAITVIQYSPD 505 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~------------------------------~~~~~~~-~~i~~~~~s~~ 505 (612)
.|+|++..+.+-..|..|+++++.++++.+. +.++.|. ..-+.+.|...
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes 287 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES 287 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence 9999999999999999999999998865211 1111122 23456788889
Q ss_pred CcEEEEEcCCCeEEEEecCCcceeeecccc------------------cccc-------eeEEEecCCCcEEEEeecCcE
Q 007229 506 VSMFASADGNREAIVWDRVSKEVKLNNMLF------------------HTAR-------INCLAWSPSSTMVATGSIDTC 560 (612)
Q Consensus 506 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~~-------i~~~~~s~~~~~l~s~~~d~~ 560 (612)
+++|+.++-=| |++.++.++.+.. .+.. +... =..+.+.+|-.+++++-....
T Consensus 288 ~~flly~t~~g-ikvin~~tn~v~r-i~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~r 365 (558)
T KOG0882|consen 288 GNFLLYGTILG-IKVINLDTNTVVR-ILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNR 365 (558)
T ss_pred CCEEEeeccee-EEEEEeecCeEEE-EeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecce
Confidence 99999987754 8899998887642 1110 0000 012336677778888888888
Q ss_pred EEEE
Q 007229 561 VIIY 564 (612)
Q Consensus 561 i~iw 564 (612)
++++
T Consensus 366 fylf 369 (558)
T KOG0882|consen 366 FYLF 369 (558)
T ss_pred EEEE
Confidence 9988
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-06 Score=73.25 Aligned_cols=278 Identities=13% Similarity=0.108 Sum_probs=145.0
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCeeeeeeccCCccc---
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKIGEFSSEDGHHG--- 236 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~--- 236 (612)
+.+.++|..+++.+-.+.. +-.-.+..+||++.+++++. .-.|.+||..+-....++..+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4689999999887766543 22334668999998887542 34588999999988887755433221
Q ss_pred -cEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 237 -SIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 237 -~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
....++++.|++++++... ..+|.+-|+ ..++.+..+..+.+ .......+..+...+.||.+....+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl----~~~kvv~ei~~PGC------~~iyP~~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDL----AAKKVVGEIDTPGC------WLIYPSGNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEET----TTTEEEEEEEGTSE------EEEEEEETTEEEEEETTSCEEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEEC----CCCceeeeecCCCE------EEEEecCCCceEEEecCCceEEEEE
Confidence 2234577788887776543 356788888 77777777665531 1111111333444444444444443
Q ss_pred CCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE-EEE--eeccEEEEecCCC
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK-CLA--AVEEVIFTAGFDN 390 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~-~~~--~~~~~l~~~~~~~ 390 (612)
....+.... +. . .|.+ ...++. .-. ..++.++-.+.+|
T Consensus 165 d~~Gk~~~~---~t----~-~F~~-------------------------------~~dp~f~~~~~~~~~~~~~F~Sy~G 205 (342)
T PF06433_consen 165 DADGKEAQK---ST----K-VFDP-------------------------------DDDPLFEHPAYSRDGGRLYFVSYEG 205 (342)
T ss_dssp TSTSSEEEE---EE----E-ESST-------------------------------TTS-B-S--EEETTTTEEEEEBTTS
T ss_pred CCCCCEeEe---ec----c-ccCC-------------------------------CCcccccccceECCCCeEEEEecCC
Confidence 332221100 00 0 0110 011111 111 1234455566777
Q ss_pred eEEEEecCCCCCCccceeccCC-CcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEe
Q 007229 391 KVWRVPLCEGECGDAEHIDVGS-QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG 469 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 469 (612)
.++-.++............... ....-.+.|.| -.-+++++..+.|++.-
T Consensus 206 ~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG-----------------------------~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 206 NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG-----------------------------WQLIAYHAASGRLYVLM 256 (342)
T ss_dssp EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S-----------------------------SS-EEEETTTTEEEEEE
T ss_pred EEEEEeccCCcccccCcccccCccccccCcCCcc-----------------------------eeeeeeccccCeEEEEe
Confidence 7777666655422111111100 00011122222 23356665554444432
Q ss_pred c--------CC--eEEEEEccCcccccceeeccccCceEEEEEcCCCc-EEEE-EcCCCeEEEEecCCcceee
Q 007229 470 Q--------NG--KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS-MFAS-ADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 470 ~--------dg--~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~-~~~d~~i~iwd~~~~~~~~ 530 (612)
. |+ .|.+||+.+++......+. .++.+|+.+.+.+ +|.+ ...++.+.+||..+++.+.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 1 11 5888899888874333333 3688999999765 5544 4568999999999998864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-06 Score=76.02 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=140.0
Q ss_pred CCeEEEEeCCCCeeeeccccc--ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC
Q 007229 169 DFLVNFYEGPPFKFKLSHREH--SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
+|.|..||..+++.+....-. .....+. ..+++..+++++.++.+..||..+|+.+............ .. .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~-~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----PV-VD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----EE-EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----ee-ec
Confidence 688999999999998876431 1222221 2335667888889999999999999998887542222222 12 23
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeee-eccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTF-ASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
+..+++++.++.+..+|. .+++.+-.. ..................++.++++..++.+..+|+.+....... ..
T Consensus 76 ~~~v~v~~~~~~l~~~d~----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~-~~ 150 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDA----KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY-PV 150 (238)
T ss_dssp TTEEEEEETTSEEEEEET----TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE-ES
T ss_pred ccccccccceeeeEeccc----CCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe-ec
Confidence 455677778889999998 899988874 333211111222333344888999999999999997765543322 22
Q ss_pred cccc----------eeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE-EEeeccEEEEecCCCeEEE
Q 007229 326 HVKN----------VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC-LAAVEEVIFTAGFDNKVWR 394 (612)
Q Consensus 326 ~~~~----------v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~i~~ 394 (612)
.... +..-.... +..++.+..++.+..+|..+++... ... ...+.. ....++.++..+.++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~~~~~d~~tg~~~w-~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS--DGRVYVSSGDGRVVAVDLATGEKLW-SKP-ISGIYSLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC--TTEEEEECCTSSEEEEETTTTEEEE-EEC-SS-ECECEECCCTEEEEEETTTEEEE
T ss_pred CCCCCCcceeeecccccceEEE--CCEEEEEcCCCeEEEEECCCCCEEE-Eec-CCCccCCceeeCCEEEEEeCCCEEEE
Confidence 2211 11111222 3477777777764444999998663 322 333443 5558888888889999999
Q ss_pred EecCCCCC
Q 007229 395 VPLCEGEC 402 (612)
Q Consensus 395 ~~~~~~~~ 402 (612)
||+.+++.
T Consensus 227 ~d~~tG~~ 234 (238)
T PF13360_consen 227 LDLKTGKV 234 (238)
T ss_dssp EETTTTEE
T ss_pred EECCCCCE
Confidence 99998763
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.3e-06 Score=70.43 Aligned_cols=252 Identities=15% Similarity=0.172 Sum_probs=155.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceE--EEEEEcCCCCEEEEE----eecCCeEEEEeC
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRV--LSCEFKPTRPFRIAT----CGEDFLVNFYEG 177 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~----~~~d~~i~~wd~ 177 (612)
.-..++.+|+....++.....+. +..+++..+++....+....+.- -.-.|||||+++++| ....|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~-~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGT-FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCc-EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 34567888865555555544443 67788888888887765544332 246899999964444 234689999999
Q ss_pred C-CCeeeecccccccceEEEEECCCCCeEEEEE------------------cCCcEEEEecCCCCeeeeeecc-CCcccc
Q 007229 178 P-PFKFKLSHREHSNFVNCIRFSPDGSKLISVS------------------SDRKGLIYDGKSGEKIGEFSSE-DGHHGS 237 (612)
Q Consensus 178 ~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~-~~~~~~ 237 (612)
. ..+.+..+..|.-....+.+.|||+.|+++- .+.++...|..+|+.+.+.... ..|.-.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 6777777877777778889999998888762 2345667778888887775331 246678
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
|..+++.++|..++..-..|.-. ....++..+.. ++.+..+...
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~--------~~~PLva~~~~-------------------------g~~~~~~~~p--- 208 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPG--------DAPPLVALHRR-------------------------GGALRLLPAP--- 208 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCC--------ccCCeEEEEcC-------------------------CCcceeccCC---
Confidence 99999999887555544333200 01111111111 1111111111
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
......-...+-+++++.......+|+-..+.+.+||..++....... -..+..++...+-++..+..|.+....
T Consensus 209 --~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 209 --EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDGFLVSSGQGQLIRLS 283 (305)
T ss_pred --hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCceEEeCCCccEEEcc
Confidence 112233456778888884333455677788999999999998876653 344556666333355555555544433
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-05 Score=72.08 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=68.4
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
..++.+..+.+++++|+.+.|+.|+.||.|.+||...+.- ......-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 4456888999999999999999999999999999876632 222344567899999999999999999999999987
Q ss_pred Ccceeee
Q 007229 525 SKEVKLN 531 (612)
Q Consensus 525 ~~~~~~~ 531 (612)
-......
T Consensus 330 Lspi~~q 336 (545)
T PF11768_consen 330 LSPIKMQ 336 (545)
T ss_pred cCcccee
Confidence 6654433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-06 Score=85.96 Aligned_cols=113 Identities=18% Similarity=0.296 Sum_probs=77.9
Q ss_pred EEEEEccCCCeEEEEe-----cCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc---CCCeEEEEecCC
Q 007229 454 TACAIAPDGSEAIVGG-----QNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD---GNREAIVWDRVS 525 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~iwd~~~ 525 (612)
+++.|--||+++|+.. ....|++||.+ +.+ ...-....+.-.+++|-|.|..+|+-. .|+.|.++.-..
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 5678888999998833 22689999987 554 222223334557899999999998763 456799997544
Q ss_pred ccee--eecccccccceeEEEecCCCcEEEE---eecCcEEEEEEccCC
Q 007229 526 KEVK--LNNMLFHTARINCLAWSPSSTMVAT---GSIDTCVIIYEIGKP 569 (612)
Q Consensus 526 ~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s---~~~d~~i~iwd~~~~ 569 (612)
-+.- ...+.....++..++|+.++..||+ ......|++|-+.+-
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 3221 0112223445999999999999998 555666999998773
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=83.08 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=170.1
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCC---CceeeEeccCCCceEEEEECCCCCEEEEeeC-cCeEEEeecCCC
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDK---PLHVEFYGEHGYPVTVARYSPNGEWIASADV-SGSVRIWGTHNG 91 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-d~~i~iwd~~~~ 91 (612)
||..|+.+.-+ ..+++..++ +|.+..|--.. -+.+..+..|-..|.+++.|-||.+++|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 45455554444 455777777 99999997543 1334446779999999999999999999777 999999999876
Q ss_pred cee-eeeeeecCCCeEEEEECC-CCCEEEEEe-CCCCeeeEEEEEec---CC-ceeeeeccCCceEEEEEEcCCCCEEEE
Q 007229 92 FVL-KNEFKVLSGRIDDLQWSP-DGLRIVACG-DGKGKSFVRAFMWD---SG-TTVGDFDGHSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 92 ~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~-~~~~~~~i~i~~~~---~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~ 164 (612)
..+ ...+....+.+..+ .+| |-..+++.+ .+.+ .+..+| .. +....-.-|..+|..+.++|.+. .++
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg----~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~v 160 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSG----KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAV 160 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCC----CcEEECCcCCcCccceecccccCceEEEEeecccc-cee
Confidence 632 11112222222222 222 222333333 3332 355555 22 23344456999999999999998 599
Q ss_pred EeecCCeEEEEeCCC------Ceeeecc---------cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 165 TCGEDFLVNFYEGPP------FKFKLSH---------REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~------~~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
+....|.|.-|..+. .+....+ ........++.|+|++..+.+-..|..|++++..+|+.++.+.
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 999999999998773 1111111 1233567899999999999999999999999999988766552
Q ss_pred ccC-----------------------------Cc-cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 230 SED-----------------------------GH-HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 230 ~~~-----------------------------~~-~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
... .| ...-..+.|...+++|+.++-=| |++.++ .+.++.+.+..
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~----~tn~v~ri~gk 315 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINL----DTNTVVRILGK 315 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEe----ecCeEEEEecc
Confidence 100 11 12334677888899999887665 899999 78888776654
Q ss_pred c
Q 007229 280 S 280 (612)
Q Consensus 280 ~ 280 (612)
.
T Consensus 316 ~ 316 (558)
T KOG0882|consen 316 D 316 (558)
T ss_pred c
Confidence 3
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.6e-06 Score=76.88 Aligned_cols=234 Identities=16% Similarity=0.128 Sum_probs=132.4
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec-c-------C---------CCceEEEEECCCCCEEEEeeCc
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG-E-------H---------GYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~-~-------h---------~~~v~~~~~s~d~~~las~~~d 80 (612)
...+....|||||+.||+..++.|++++..+++..+.-. | - -+.-.++-|||||++||....|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 457889999999999999999999999998775544211 2 0 1123578899999999875422
Q ss_pred C------------------------------------eEEEeecCCCceeeeeee----ecCCCeEEEEECCCCCEEEEE
Q 007229 81 G------------------------------------SVRIWGTHNGFVLKNEFK----VLSGRIDDLQWSPDGLRIVAC 120 (612)
Q Consensus 81 ~------------------------------------~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~ 120 (612)
. .+.|+|+.+++....... ....-+..+.|+++++.|+..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 1 144556655543111111 123357889999999855444
Q ss_pred e--CCCCeeeEEEEEecCCceeeeecc-CC---ceEEEEEEc-CCCCEEEEEeecCCeE--EEEeCCCCeeeeccccccc
Q 007229 121 G--DGKGKSFVRAFMWDSGTTVGDFDG-HS---RRVLSCEFK-PTRPFRIATCGEDFLV--NFYEGPPFKFKLSHREHSN 191 (612)
Q Consensus 121 ~--~~~~~~~i~i~~~~~~~~~~~~~~-~~---~~v~~~~~~-~~~~~~l~~~~~d~~i--~~wd~~~~~~~~~~~~~~~ 191 (612)
- .......+.+++..+++....... .. ..-....|. +++..++.....+|.- .+.+...+... .+....-
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~ 280 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDW 280 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCce
Confidence 3 333333344444445443322211 11 222345554 7776666666677744 44566666544 4444455
Q ss_pred ceE-EEEECCCCCeEEEEEcC-----CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 192 FVN-CIRFSPDGSKLISVSSD-----RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 192 ~v~-~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
.|. -+.++++++.|+..+.. ..+..-++..+..+..+....+. -..+.|+|++++++....
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~---~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD---HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST---TEEEEE-TTSSEEEEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC---ceEEEECCCCCEEEEEEc
Confidence 564 47788888766544432 24555555523455555322111 168999999998876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-06 Score=84.42 Aligned_cols=225 Identities=12% Similarity=0.125 Sum_probs=140.8
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccc-eeEEEEEecCCcEEEEEecCCc-----EEEEEcCCce
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKN-VSTLTALKISQQTILSSSYDGA-----IIKWIRGVGY 361 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~ 361 (612)
.+.++..+.+.++.|+.+|.|.+++-. ......++.+... +..+ +......+|++-+.|+. +++|+++...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 556666678899999999999988722 2333455556555 3333 33222457777666653 6667665432
Q ss_pred eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecc
Q 007229 362 SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
.... ..|+ +..+++....+
T Consensus 104 ~n~s-------P~c~-------------~~~ri~~~~np----------------------------------------- 122 (933)
T KOG2114|consen 104 KNNS-------PQCL-------------YEHRIFTIKNP----------------------------------------- 122 (933)
T ss_pred CCCC-------ccee-------------eeeeeeccCCC-----------------------------------------
Confidence 1000 0000 01111111111
Q ss_pred cceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEcc--CcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 442 KVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSIS--GNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 442 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
..+.++.+++++.+-+.+|+|..||.|..+.=+ ..+-..........++|+.+++..+++.++.+..-..|.
T Consensus 123 ------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~ 196 (933)
T KOG2114|consen 123 ------TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVM 196 (933)
T ss_pred ------CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeE
Confidence 123578899999999999999999999998532 111111233344567999999999988743333446799
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCe
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGV 584 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v 584 (612)
+|.+....+....+..|....+|-.|++....+++++. ..+.+|+.+..+ .+...-.+|....
T Consensus 197 ~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~-~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 197 LYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG-PCFAFEVGEKKEM 259 (933)
T ss_pred EEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc-eeeeecCCCeEEE
Confidence 99998666444557778899999999976654666654 459999998755 5555444666543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-08 Score=89.17 Aligned_cols=187 Identities=13% Similarity=0.133 Sum_probs=121.9
Q ss_pred CceeEEEEccCCCEEEEec----C-CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcCe--EEEeecCC
Q 007229 19 GRGILISGNPKTDTILYCN----G-RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGS--VRIWGTHN 90 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~----~-~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~~--i~iwd~~~ 90 (612)
..+..-+|+|+++.+++.. . ..++++++++++....+. -.+.-...+|||||+.||.+ ..||. |.+.|+.+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3556678999999999885 2 369999999887766544 34444577999999988865 45565 55667666
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
+. +. .+..-.+.-..-.|+|||++++..++.++...|.+..++.+.. ..+......-..-.++|||++++.....+|
T Consensus 272 ~~-~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 272 KN-LP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred Cc-ce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence 65 32 3444444444778999999999999888764444444444433 444333333337789999997555554445
Q ss_pred e--EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 171 L--VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 171 ~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
. |.+.|+.++.....+ .+......-.|.|+++.+...+.
T Consensus 349 ~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 349 QWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence 4 666676666543222 23333445567888887766544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-06 Score=76.24 Aligned_cols=221 Identities=14% Similarity=0.117 Sum_probs=135.9
Q ss_pred EEEEEecCCceeeeecc---CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE
Q 007229 129 VRAFMWDSGTTVGDFDG---HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 205 (612)
+..++..+|+.+....- ....+ +. ..++++ .+++++.++.+..||..+|+.+..... ...+.... ..++..+
T Consensus 5 l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGG-RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp EEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETT-EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCC-EEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 45566667777777643 22222 11 222444 477778999999999999998877654 22221111 2235567
Q ss_pred EEEEcCCcEEEEecCCCCeeeee-eccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEF-SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
++++.++.++.+|..+|+.+... .................++..++.+..++.|..+|+ .+++.+-.........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~----~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP----KTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET----TTTEEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec----CCCcEEEEeecCCCCC
Confidence 77788899999999999998884 211001111222233334777888888999999999 8999988887743221
Q ss_pred c------ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 285 V------EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 285 ~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
. ......+...++.+++...++.+..+|........ ... ......+. ...+..++.++.++.+..||..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w-~~~--~~~~~~~~--~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLW-SKP--ISGIYSLP--SVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEE-EEC--SS-ECECE--ECCCTEEEEEETTTEEEEEETT
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEE-Eec--CCCccCCc--eeeCCEEEEEeCCCEEEEEECC
Confidence 1 11223344445688888888864444877665332 211 22222211 2227788877799999999999
Q ss_pred Cceee
Q 007229 359 VGYSS 363 (612)
Q Consensus 359 ~~~~~ 363 (612)
+++..
T Consensus 231 tG~~~ 235 (238)
T PF13360_consen 231 TGKVV 235 (238)
T ss_dssp TTEEE
T ss_pred CCCEE
Confidence 98764
|
... |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.0002 Score=70.66 Aligned_cols=563 Identities=12% Similarity=0.070 Sum_probs=285.0
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCce-------eeEeccCCCceEEEEECCC----CCEEEEee---CcCeE
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLH-------VEFYGEHGYPVTVARYSPN----GEWIASAD---VSGSV 83 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~-------~~~~~~h~~~v~~~~~s~d----~~~las~~---~d~~i 83 (612)
-..|+.+-++| .+.+|+ +.+ .+-.+.+..- +..+. .-++|..++.-.+ +..++|++ .||++
T Consensus 308 iassi~~L~ng-~lFvGS~~gdS-qLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSL 384 (1096)
T KOG1897|consen 308 IASSINYLDNG-VLFVGSRFGDS-QLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSL 384 (1096)
T ss_pred hhhhhhcccCc-eEEEeccCCce-eeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcE
Confidence 44566677777 455555 222 2233322111 11122 3457777776552 23455543 78999
Q ss_pred EEeecCCCce--eeeeeeecCCCeEEEE--ECC--CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC
Q 007229 84 RIWGTHNGFV--LKNEFKVLSGRIDDLQ--WSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP 157 (612)
Q Consensus 84 ~iwd~~~~~~--~~~~~~~~~~~i~~~~--~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (612)
++....-+-. -...+.+ -..+..+. +.+ |. +|+.+--+.. ++......-......+.......+..|.
T Consensus 385 RiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~eT----rvl~i~~e~ee~~~~gf~~~~~Tif~S~ 458 (1096)
T KOG1897|consen 385 RIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFISET----RVLNISEEVEETEDPGFSTDEQTIFCST 458 (1096)
T ss_pred EEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEeccce----EEEEEccceEEeccccccccCceEEEEc
Confidence 9986543321 1112222 33455555 333 33 5544433332 2333332211111122222222222222
Q ss_pred -CCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 158 -TRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 158 -~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
.++. ++-... ..||+++-. .....+. ..+.++....+.+...++.++.++.+...++..+...... ......
T Consensus 459 i~g~~-lvQvTs-~~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~--~~~~e~ 531 (1096)
T KOG1897|consen 459 INGNQ-LVQVTS-NSIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVS--HKEFEY 531 (1096)
T ss_pred cCCce-EEEEec-ccEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeee--eheecc
Confidence 1221 222222 246666644 1222232 2334455555556667777777777777777666522222 124567
Q ss_pred cEEEEEEecC--C----CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEE
Q 007229 237 SIYAVSWSPD--G----KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIIS 309 (612)
Q Consensus 237 ~v~~i~~~~~--~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 309 (612)
.|.|+.++|- + +++++|..+..+.+.-.. .+...+..............+...... ..++.++..+|.+.
T Consensus 532 evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~---pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 532 EVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL---PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred eeEEEecccCCCCCCcceEEEEEeecceEEEEEEC---CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 8899999973 2 267777776665554441 333333333333322333333333333 78899999999998
Q ss_pred EEEcCCCCCCceeec---CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-----ecc
Q 007229 310 IFSASNLDKAPLSFS---GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-----VEE 381 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-----~~~ 381 (612)
.|.+....-.....+ --..++.--.|.......++++ .|.-..+|..+..-...... -..+..++. -++
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-sdrP~viY~~n~kLv~spls--~kev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL-SDRPTVIYSSNGKLVYSPLS--LKEVNHMCPFNSDAYPD 685 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe-CCCCEEEEecCCcEEEeccc--hHHhhhhcccccccCCc
Confidence 887654332222111 1223444444443223444433 34444444433222211111 111111111 123
Q ss_pred EEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEee-----------c---cEEEee--ccccee
Q 007229 382 VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE-----------S---GVILLD--SLKVMS 445 (612)
Q Consensus 382 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~--~~~~~~ 445 (612)
.++.+. .+.+++..+..-+......+.....++.+++.+...-+.+.... . .+.+++ +.+.+.
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 333333 33445554444433334446666677777776632222221111 0 122333 111111
Q ss_pred eec-----ccceEEEEEEccC-CCeEEEEe----------cCCeEEEEEccC-cccccceeeccccCceEEEEEcCCCcE
Q 007229 446 KID-----LGFTVTACAIAPD-GSEAIVGG----------QNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSPDVSM 508 (612)
Q Consensus 446 ~~~-----~~~~i~~~~~s~~-~~~l~~~~----------~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (612)
..+ ....+.++.|..| +.++++|+ ..|.|.+|.+.. +++....... -++.+.++.. -+|++
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~-fngkl 842 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVE-FNGKL 842 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhh-hCCeE
Confidence 111 2234555668877 78888886 358899998877 4432222111 2344444432 26777
Q ss_pred EEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeee-cccccCeeeE
Q 007229 509 FASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIK-NAHLGGVYGV 587 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~ 587 (612)
||.- +..|++|++.+.+.+ ..-..|..++..+...-.|..+++|..-+.+.+-..+.........- ..+....+++
T Consensus 843 lA~I--n~~vrLye~t~~~eL-r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtav 919 (1096)
T KOG1897|consen 843 LAGI--NQSVRLYEWTTEREL-RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAV 919 (1096)
T ss_pred EEec--CcEEEEEEcccccee-hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeE
Confidence 7765 458999999988665 44555888999999999999999999888888877765221232222 2466788888
Q ss_pred EEecCceEEEccCCCeEEEEEec
Q 007229 588 AFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 588 ~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+.++...+-+..+|.+.+=..+
T Consensus 920 eil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 920 EILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEecCceEEeecccccEEEEEec
Confidence 88866666666778887776554
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=59.33 Aligned_cols=39 Identities=41% Similarity=0.455 Sum_probs=36.5
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
++++.++.+|..+|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.9e-05 Score=66.13 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=107.1
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeecCCCceeeeeeeecC------
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGTHNGFVLKNEFKVLS------ 102 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~------ 102 (612)
+.++|+|.++++.+-.+..- -.-.+.+|||++.+.+++ ..-.|.+||.++..... .+.-..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~-EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG-EIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE-EEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc-eEecCCcchhee
Confidence 58999999999887765532 223467899999988753 34469999999987422 222111
Q ss_pred -CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC-CC
Q 007229 103 -GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PF 180 (612)
Q Consensus 103 -~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~ 180 (612)
.....+++|.||+++++.-..... .+.|.+...++.+..+..... .-.-|.++..+.+-+.||.+.-..+. .|
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~-SVtVVDl~~~kvv~ei~~PGC----~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPAT-SVTVVDLAAKKVVGEIDTPGC----WLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSE-EEEEEETTTTEEEEEEEGTSE----EEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred cccccceEEccCCcEEEEEccCCCC-eEEEEECCCCceeeeecCCCE----EEEEecCCCceEEEecCCceEEEEECCCC
Confidence 123456899999999887655544 577778778887776653321 11122222247777788888877766 44
Q ss_pred eeeec----ccccccc-eEEEEECCCCCeEEEEEcCCcEEEEecCCCC
Q 007229 181 KFKLS----HREHSNF-VNCIRFSPDGSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 181 ~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
+.... +....++ +..-++...+..++..+.+|.|+--|+....
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 44322 1111122 2233444455556667889999998887655
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.3e-09 Score=98.30 Aligned_cols=212 Identities=14% Similarity=0.106 Sum_probs=154.2
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--CeEEEeecCCCce
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFV 93 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~ 93 (612)
+...-+|++||.+.+.|++|. .|.|.++++.+|........|...|+.+.-|.||..+.+.+.- .-..+|++.+...
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 456788999999999999998 8999999999999999999999999999999999988776533 2478999987443
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee-c---cCCceEEEEEEcCCCCEEEEEeecC
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-D---GHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
.++.+. .-.++.|+...+.-+.+.... ...+|+.+++.++.++ . +....-.+..|+|++.. ++ .|
T Consensus 1180 ~~Hsf~----ed~~vkFsn~~q~r~~gt~~d---~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L-Il---nd 1248 (1516)
T KOG1832|consen 1180 PRHSFD----EDKAVKFSNSLQFRALGTEAD---DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL-IL---ND 1248 (1516)
T ss_pred cccccc----ccceeehhhhHHHHHhccccc---ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce-Ee---eC
Confidence 433333 456788887655444444333 2578888888877763 2 22233377889999983 43 34
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
| .+||++..+.++.+...+..+. -.|+|.|..++.-+ -|||+++.+.+...+.. .-..+.|+..|..
T Consensus 1249 G--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L-----dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL-----DQCAVTFNSTGDV 1315 (1516)
T ss_pred c--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcCccc-----cceEEEeccCccc
Confidence 4 5799998887777665543333 35999999888754 48999998888777321 2346778887875
Q ss_pred EEE
Q 007229 250 VLT 252 (612)
Q Consensus 250 l~~ 252 (612)
+..
T Consensus 1316 mYa 1318 (1516)
T KOG1832|consen 1316 MYA 1318 (1516)
T ss_pred hhh
Confidence 543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.6e-07 Score=76.98 Aligned_cols=237 Identities=10% Similarity=0.005 Sum_probs=146.0
Q ss_pred CCCceeEEEEccCCC-EEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCce
Q 007229 17 ERGRGILISGNPKTD-TILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~ 93 (612)
+...|..++|||..+ ++..++ ++.|.|.|+++......+..| ..+.+++|.-|. .+|..|...|.|.|||+...+.
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 345788999999988 666666 899999999999888888877 889999999865 5777888999999999987765
Q ss_pred eeeeeee--cCCCeEEEEE------CCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec-cCCceEEEEEEcCCCCEE
Q 007229 94 LKNEFKV--LSGRIDDLQW------SPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD-GHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 94 ~~~~~~~--~~~~i~~~~~------s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 162 (612)
....+.+ ...+|..++. .+.|..|+....+- ..|... .+.....++ +..+...++...+..+.+
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l-----~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL-----QFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHL 345 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehhh-----hhhhhhccccCCCcccccCCCcceeeeeecCccceE
Confidence 3333332 1224444333 33455555544432 233222 222222222 235666777777766767
Q ss_pred EEEeecCCe------EEE-EeCCCCeeeecc-ccc----cc---ceEEEEECCCCCeEEE-EEcCCcEEEEecCCCCeee
Q 007229 163 IATCGEDFL------VNF-YEGPPFKFKLSH-REH----SN---FVNCIRFSPDGSKLIS-VSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 163 l~~~~~d~~------i~~-wd~~~~~~~~~~-~~~----~~---~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~ 226 (612)
|++.-.+.. |-. -|...|..+... .++ .. .-..+.-.++.++++. +...+++.+||+.+.+.++
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 777655311 100 111222221110 011 00 0011222345565554 4456889999999999999
Q ss_pred eeeccCCccccEEEEEEec-C-CCEEEEEeCCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSP-D-GKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~-~-~~~l~~~~~dg~i~iw~~ 264 (612)
.+ ....+|..++... + +.+|++- .|..+++|..
T Consensus 426 ~l----~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 426 TL----ALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred ec----ccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 99 6668899888765 3 3455555 4567888875
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6e-06 Score=79.36 Aligned_cols=224 Identities=15% Similarity=0.177 Sum_probs=137.2
Q ss_pred EECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc-EEEEEEecCCCEEEEEeCCCc-----EEEEEeecCCCC
Q 007229 197 RFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS-IYAVSWSPDGKKVLTVSADKS-----AKVWEILEDGSG 270 (612)
Q Consensus 197 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~dg~-----i~iw~~~~~~~~ 270 (612)
+|++.+..++.|+.+|.|.+.+ +.-+.+..+. .+... +..+....+..+|++.++|+. +++|++.....+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fq---a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQ---AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehhe---ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4678888999999999998887 3444445552 45555 444444444478888887754 899998432111
Q ss_pred --CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEec
Q 007229 271 --GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 271 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 348 (612)
..++.... ++. ...+....++..++.+.. -+.++.|..
T Consensus 106 ~sP~c~~~~r-------------------------------i~~--------~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~ 145 (933)
T KOG2114|consen 106 NSPQCLYEHR-------------------------------IFT--------IKNPTNPSPASSLAVSED-LKTIVCGFT 145 (933)
T ss_pred CCcceeeeee-------------------------------eec--------cCCCCCCCcceEEEEEcc-ccEEEEEec
Confidence 12221111 111 011123456777777722 788899999
Q ss_pred CCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEE
Q 007229 349 DGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELAL 428 (612)
Q Consensus 349 dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (612)
+|.|..+.-+-.+. ...
T Consensus 146 nG~V~~~~GDi~RD---------------------------rgs------------------------------------ 162 (933)
T KOG2114|consen 146 NGLVICYKGDILRD---------------------------RGS------------------------------------ 162 (933)
T ss_pred CcEEEEEcCcchhc---------------------------ccc------------------------------------
Confidence 99988873221100 000
Q ss_pred EEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcE
Q 007229 429 VSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSM 508 (612)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (612)
+.......+.+|+.+++..+++.++....-..|.+|.+.+.. .....+..|..+..|-.|++....
T Consensus 163 -------------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q 228 (933)
T KOG2114|consen 163 -------------RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ 228 (933)
T ss_pred -------------ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc
Confidence 001111234679999999998873333344579999998555 445568888899999999986664
Q ss_pred EEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 509 FASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
+++++. ..+.+|+..........-.+|......
T Consensus 229 fIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 229 FICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEEecC-ceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 555544 469999988776654433355554433
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-08 Score=83.31 Aligned_cols=161 Identities=13% Similarity=0.058 Sum_probs=115.4
Q ss_pred EEEEeeccEEEee-cccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc--ccceeeccccCceEEEEEc
Q 007229 427 ALVSTESGVILLD-SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL--TEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 427 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~i~~~~~s 503 (612)
+.++.+.++.+.+ .....+.+..+..|.++.|...+.++..|+.+|.|..+|++.+.. ......--|...|+++..-
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 4455556666665 444455566777888999999899999999999999999986521 0012233488899998877
Q ss_pred C-CCcEEEEEcCCCeEEEEecCCcce---eeecccccccceeEEE--ecCCCcEEEEeecCcEEEEEEccCCCcceeeee
Q 007229 504 P-DVSMFASADGNREAIVWDRVSKEV---KLNNMLFHTARINCLA--WSPSSTMVATGSIDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 504 ~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~--~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 577 (612)
. ++++|++.+.+|+|++||++.-++ + ..+.+|...-..+- ..+....+++++.|...|||.++. + .++.++
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V-~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-g-hLl~ti 384 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSV-MQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-G-HLLCTI 384 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccce-eeeecccccccccccccccccceEEEccCeeEEEEEeccc-C-ceeecc
Confidence 6 888999999999999999987766 4 45666765444333 345666888899999999999998 5 555554
Q ss_pred cccc----cCeeeEEEe
Q 007229 578 NAHL----GGVYGVAFM 590 (612)
Q Consensus 578 ~~h~----~~v~~~~~~ 590 (612)
.-.. ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 4222 245566665
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=76.26 Aligned_cols=252 Identities=8% Similarity=-0.055 Sum_probs=141.2
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCC-CeEEEEEcCCcEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDG-SKLISVSSDRKGL 215 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 215 (612)
-+...-+.+|...|..++|+|..+-++..++.+..|++.|+++......+..+ ..+++++|.-|. ++++.|...|.|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 34455677888999999999998877999999999999999999998888777 789999998765 4677777899999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEe------cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWS------PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
|||++..+-.......+....+|..++.- +.+.+++.... .+..|++....+...++.....+ ...
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~p------G~c 333 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPP------GIC 333 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCC------cce
Confidence 99998765432221111233445544432 23444444433 35677764332322222222211 112
Q ss_pred eeeecc--CCEEEEEEcCC-------EEEEE-EcCCCCCCceeecCccc----ce--eEEEEEecCCc-EEEEEecCCcE
Q 007229 290 VGCLWQ--NDHLITVSLGG-------IISIF-SASNLDKAPLSFSGHVK----NV--STLTALKISQQ-TILSSSYDGAI 352 (612)
Q Consensus 290 ~~~~~~--~~~~~~~~~~~-------~i~~~-~~~~~~~~~~~~~~~~~----~v--~~~~~~~~~~~-~l~~~~~dg~i 352 (612)
..+... .+.+++....+ .+..+ |...+......-+++.+ ++ +...+...+.+ .+..+...+.+
T Consensus 334 ismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~l 413 (463)
T KOG1645|consen 334 ISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNEL 413 (463)
T ss_pred eeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCccee
Confidence 222221 12222221110 00000 00011111111111100 00 01111111133 34456677899
Q ss_pred EEEEcCCceeeeeceecccceEEEEe---eccEEEEecCCCeEEEEecC
Q 007229 353 IKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 353 ~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~~~~i~~~~~~ 398 (612)
.+||..+........ .+.++..+.+ ++.-++..-.|..++++..+
T Consensus 414 il~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 414 ILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred EEeccchhheeeecc-cCcceeecceeecCCcchhhheecceEEEEecC
Confidence 999999998888776 5678888777 44445555556677776543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.1e-07 Score=82.45 Aligned_cols=207 Identities=17% Similarity=0.170 Sum_probs=135.9
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee---Cc-CeEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD---VS-GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
..+.+-|.+ +...+.+..-...+..-+|+|+++.++-.+ .. ..+.++|+.+++.. ......+.-...+|+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--~i~~~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--VILNFNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc--eeeccCCccCCccCCCCC
Confidence 455566666 555565666677888899999999877553 23 46999999988742 222245556677999999
Q ss_pred CEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE--eCCCCeeeecccccc
Q 007229 115 LRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY--EGPPFKFKLSHREHS 190 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w--d~~~~~~~~~~~~~~ 190 (612)
++|+.+....+. ..||..+ .+. +..+..-.+.-..=.|+|||++++.+.+..|.-.|| +.+..... .+....
T Consensus 250 ~~l~f~~~rdg~--~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~ 325 (425)
T COG0823 250 SKLAFSSSRDGS--PDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSG 325 (425)
T ss_pred CEEEEEECCCCC--ccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccC
Confidence 999998877665 4555555 444 444554444445778999999888887777755555 55555432 222222
Q ss_pred cceEEEEECCCCCeEEEEEcC-Cc--EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSD-RK--GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~d-g~--i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 256 (612)
..-..-.|+|||++++..+.. |. |.+.|+.++.....+ ........-.|.++++.+...+..
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l----t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL----TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc----cccccCCCCCcCCCCceEEEeccC
Confidence 222267899999999887753 44 667777666655554 334444456788888877665543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-06 Score=78.42 Aligned_cols=221 Identities=10% Similarity=-0.018 Sum_probs=133.1
Q ss_pred EEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC----eEEEeecCCCceeee
Q 007229 23 LISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG----SVRIWGTHNGFVLKN 96 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~----~i~iwd~~~~~~~~~ 96 (612)
.+-++|||+.+...+ .+.+.+.|.++.+....+.- .+.-..++++|||+++.+.+.+. ++..-+..+...+ .
T Consensus 197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~-v 274 (635)
T PRK02888 197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV-V 274 (635)
T ss_pred ccccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE-E
Confidence 456788998876555 47888889998776555442 22446789999999998886422 2333322221100 0
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC----CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS----GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
.+. -..+ -++.++|++.... ++ .+.+.+-.+ +..+...-.-......++++|||+++++++..+.+|
T Consensus 275 vfn--i~~i--ea~vkdGK~~~V~--gn---~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 275 VFN--IARI--EEAVKAGKFKTIG--GS---KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred EEc--hHHH--HHhhhCCCEEEEC--CC---EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcE
Confidence 000 0000 1345578776653 22 234444444 223333333566778899999999999999999999
Q ss_pred EEEeCCCCee------------eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC----------CCeeeeeec
Q 007229 173 NFYEGPPFKF------------KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS----------GEKIGEFSS 230 (612)
Q Consensus 173 ~~wd~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~ 230 (612)
.+.|+.+.+. .....- .......+|.++|+...+..-|..|..||+.+ ...+..+..
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV 424 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDV 424 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccC
Confidence 9999987653 222221 22345678999998777778899999999876 223333311
Q ss_pred --cCCccccEEEEEEecCCCEEEEEeC
Q 007229 231 --EDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 231 --~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
..+|......=.-.|||++|++...
T Consensus 425 ~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 425 HYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CCccceeeecCCCcCCCCCCEEEEccc
Confidence 1122222222234678898888643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=83.21 Aligned_cols=185 Identities=18% Similarity=0.164 Sum_probs=126.4
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccce
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEH 407 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 407 (612)
..+.+++++ +..++-|+.+|.+++.+.+... ..... |... ...|+++++++.||++.+-.+-+...
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~-~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~----- 105 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFD-HSSS----ILEGEYVASCSDDGKVVIGSLFTDDE----- 105 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccc-cccc----ccCCceEEEecCCCcEEEeeccCCcc-----
Confidence 345555555 6899999999999999887654 11111 2222 45789999999999998877655442
Q ss_pred eccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC-----CCeEEEEecCCeEEEEEccCc
Q 007229 408 IDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD-----GSEAIVGGQNGKLHIYSISGN 482 (612)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~dg~v~i~d~~~~ 482 (612)
........++.+++++|| .+.+++|+.-| +.++.-.=-
T Consensus 106 ------------------------------------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl 148 (846)
T KOG2066|consen 106 ------------------------------------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL 148 (846)
T ss_pred ------------------------------------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh
Confidence 233445567888999997 56789999988 777764311
Q ss_pred ccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccc-----eeEEEecCCCcEEEEeec
Q 007229 483 TLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR-----INCLAWSPSSTMVATGSI 557 (612)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~s~~~ 557 (612)
.......+..-.++|.++.| .|.++|-++.+| |++||+.+++.+......+..+ ...+.|.++. .|+.|-.
T Consensus 149 gnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~ 224 (846)
T KOG2066|consen 149 GNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG 224 (846)
T ss_pred cCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC
Confidence 11112345667789999999 567999998776 8999999988874443333211 2357787665 4555544
Q ss_pred CcEEEEEEccC
Q 007229 558 DTCVIIYEIGK 568 (612)
Q Consensus 558 d~~i~iwd~~~ 568 (612)
.+|+|..++.
T Consensus 225 -d~v~i~~I~~ 234 (846)
T KOG2066|consen 225 -DSVKICSIKK 234 (846)
T ss_pred -CeEEEEEEec
Confidence 4599999884
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-06 Score=81.24 Aligned_cols=108 Identities=15% Similarity=0.219 Sum_probs=83.1
Q ss_pred EEEEEcCCCCEEEEEee----cCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 151 LSCEFKPTRPFRIATCG----EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
+-..|+|..+ +++.++ ..|+|.||- .+|++..... ..-.+.+++|+|..-.|+.|-.-|.+.+|...+.+...
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 3457888888 476664 357888883 4555443321 22236779999998888888889999999977665544
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.. ..|..+|..+.|+++|..++++..-|.+.+|..
T Consensus 96 v~---~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 96 VV---ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ec---cCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 44 489999999999999999999999999999998
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-08 Score=96.79 Aligned_cols=204 Identities=16% Similarity=0.245 Sum_probs=148.7
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
..+.+..|+..-+|++||-+.+.|+.|+..|.|+++++.+|. .......|+..|+.+.=+.||..+++.+.-..- ...
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P-lsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP-LSA 1170 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCc-hHH
Confidence 345677899999999999999999999999999999999998 555788999999999999999988776654321 112
Q ss_pred EEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-cc---cccceEEEEECCCCCeE
Q 007229 131 AFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-RE---HSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 131 i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l 205 (612)
+|... ++.+.++|.+ -.++.|+....+ -+.|.......+||++++....++ .+ .+..=++..|+|+.+++
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 34333 4555555543 356788887664 444444456899999999887763 22 22233778899999876
Q ss_pred EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
+ .|| .+||.+..+.+..|.. .. --..-.|+|.|..++.-+ .+||+ .+.+.++....
T Consensus 1246 l---ndG--vLWDvR~~~aIh~FD~---ft-~~~~G~FHP~g~eVIINS-----EIwD~----RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAIHRFDQ---FT-DYGGGGFHPSGNEVIINS-----EIWDM----RTFKLLHSVPS 1301 (1516)
T ss_pred e---eCc--eeeeeccHHHHhhhhh---he-ecccccccCCCceEEeec-----hhhhh----HHHHHHhcCcc
Confidence 6 355 6899999888888732 22 222346999999888765 48999 77777766543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-05 Score=74.57 Aligned_cols=224 Identities=14% Similarity=0.040 Sum_probs=134.2
Q ss_pred ccCCCEEEEec--CCEEEEEeCCCCceeeEec---------------cCCCceEE-----EEECCCCCEEEE-eeCcCeE
Q 007229 27 NPKTDTILYCN--GRSVLIRYLDKPLHVEFYG---------------EHGYPVTV-----ARYSPNGEWIAS-ADVSGSV 83 (612)
Q Consensus 27 s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~---------------~h~~~v~~-----~~~s~d~~~las-~~~d~~i 83 (612)
..||+||..-. ...|-..+++.-++-+.++ .+++-|.| +=++|||+.+.. .-..+.+
T Consensus 138 ~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 138 TYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 34899998887 4555555555433322211 12222322 235567766543 3345678
Q ss_pred EEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCCCCE
Q 007229 84 RIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPTRPF 161 (612)
Q Consensus 84 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 161 (612)
.+.|.++.+... ++.. .+....++++|||+++.+.+.+... -..+...+.+. .+..+.- .. .-++.++|++
T Consensus 218 SvID~etmeV~~-qV~V-dgnpd~v~~spdGk~afvTsyNsE~-G~tl~em~a~e~d~~vvfni--~~--iea~vkdGK~ 290 (635)
T PRK02888 218 TAVDAETMEVAW-QVMV-DGNLDNVDTDYDGKYAFSTCYNSEE-GVTLAEMMAAERDWVVVFNI--AR--IEEAVKAGKF 290 (635)
T ss_pred EEEECccceEEE-EEEe-CCCcccceECCCCCEEEEeccCccc-CcceeeeccccCceEEEEch--HH--HHHhhhCCCE
Confidence 888888766333 3322 2355778999999999887632210 01122222111 1111100 00 0134557776
Q ss_pred EEEEeecCCeEEEEeCCC-----CeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCe-----------
Q 007229 162 RIATCGEDFLVNFYEGPP-----FKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEK----------- 224 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~----------- 224 (612)
..+ .++.|.+.|..+ .+.+..+. -......++++|||+++++++. +.++.|.|+++.+.
T Consensus 291 ~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 291 KTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred EEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 444 367899999988 34444333 4456788999999999887665 89999999988653
Q ss_pred -eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 225 -IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 225 -~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..+. .-.......+|.++|+...+..-|..|..|++.
T Consensus 367 vvaev----evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 367 VVAEP----ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred EEEee----ccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 3333 223445577899999888888889999999983
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-05 Score=75.57 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=98.7
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeE-eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
+...+.--+++..+++|+.|+ .|.+++|+-..++.+.. ..+-.+.+..+.+|++..++|.|+..|.|.++.+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344666677788899999998 59999999887766543 2335566777889999999999999999999998875431
Q ss_pred ee-----eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC----ceeeeeccCCceEEEEEEcCC
Q 007229 95 KN-----EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG----TTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 95 ~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~ 158 (612)
.. .-..|+..|++++|++|++.+.+|...+ .+.....++. ...+.+......|..+.....
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~G---kv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~ 181 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQG---KVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS 181 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCc---eEEEEEechhhhhccccceeeccCcceEEeecccc
Confidence 11 1123678999999999999999988877 3455555541 122333344566666665543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.4e-06 Score=77.45 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=125.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 182 (612)
.+++++++ ++.++.+..++ .++..+ .+.+ .+...|... .-+|.| +++|+.||+|.+-.+-+.+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g-----~v~~~~~~~~~-~~~~~~s~~------~~~Gey-~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRG-----AVYLTTCQGNP-KTNFDHSSS------ILEGEY-VASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred HHHHHHhh--cceeeeccccc-----eEEEEecCCcc-ccccccccc------ccCCce-EEEecCCCcEEEeeccCCcc
Confidence 34455543 45677777665 344444 2332 333334433 557886 99999999999999888877
Q ss_pred eecccccccceEEEEECCC-----CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 183 KLSHREHSNFVNCIRFSPD-----GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
..++. ...++.+++++|+ .+++++|+..| +.++.-.--...... ......++|.++.|. |+++|-++.+|
T Consensus 106 ~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 106 ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC
Confidence 66553 4567999999998 46789999888 777653211111111 112567899999996 88888887665
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccc-cceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNA-VEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
+++||. ..++.+..++.+.... .......+.|.++..++.+...+|.+..++
T Consensus 181 -v~vyd~----~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 -VKVYDT----PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred -cEEEec----cccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 899999 7888777776655322 233445567777777777778888888877
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-05 Score=73.09 Aligned_cols=216 Identities=15% Similarity=0.122 Sum_probs=119.6
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEe-ecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIW-GTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iw-d~~~~~~~~~~~ 98 (612)
.+..++++|+|++++++++|...|+.....+... .+.-...+|++.++ .|+-...++|.|+ +++... .. .+
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~-~k-~i 105 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEV-VK-SI 105 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-T-T----
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCcccc-ce-EE
Confidence 3568999999999999999999999844333322 23445788999666 5555558889996 443322 11 11
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
.. ...+..+-. |..|...+.+ .+.+++|++++.++.+... +|..+.|++++.+ ++..+.+ .+.+++..
T Consensus 106 ~~-~~~~~~If~---G~LL~~~~~~----~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~-val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 106 KL-PFSVEKIFG---GNLLGVKSSD----FICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL-VALVTKD-SIYILKYN 173 (443)
T ss_dssp ---SS-EEEEE----SSSEEEEETT----EEEEE-TTT--EEEEESS---E-EEEEE-TTSSE-EEEE-S--SEEEEEE-
T ss_pred cC-CcccceEEc---CcEEEEECCC----CEEEEEhhHcceeeEEecC--CCcEEEEECCCCE-EEEEeCC-eEEEEEec
Confidence 11 112333333 8888887776 4889999999999999854 4899999999995 6666544 56666533
Q ss_pred CC---------e--eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 179 PF---------K--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 179 ~~---------~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
.. - ....+..-...|.+..|..| .++..+.. .++- +-.|+.-..- .-..++.-+.+.++.
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~----~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA----HLDKPLYLLGYLPKE 244 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE----E-SS--EEEEEETTT
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE----EcCCceEEEEEEccC
Confidence 22 0 11222222567888888865 44444444 5665 3334332222 224567777888877
Q ss_pred CEEEEEeCCCcEEEEEe
Q 007229 248 KKVLTVSADKSAKVWEI 264 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~ 264 (612)
+.+.....|+.+..+.+
T Consensus 245 ~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYEL 261 (443)
T ss_dssp TEEEEE-TT--EEEEE-
T ss_pred CEEEEEECCCCEEEEEE
Confidence 78888888988888877
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00044 Score=64.51 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=72.9
Q ss_pred EEEEEccCccccccee-eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE
Q 007229 474 LHIYSISGNTLTEEMV-LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 474 v~i~d~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 552 (612)
-.+|++..+++..... --.....+.+.+++|+...|+.|+.||.|.+||...+..... ...-.++.++|+|+|.++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEE
Confidence 4567777665432221 124567899999999999999999999999999987755422 245668899999999999
Q ss_pred EEeecCcEEEEEEccC
Q 007229 553 ATGSIDTCVIIYEIGK 568 (612)
Q Consensus 553 ~s~~~d~~i~iwd~~~ 568 (612)
++|+..|.+.+||+.-
T Consensus 315 ~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 315 VVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCceEEEEEeec
Confidence 9999999999999864
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00016 Score=61.82 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=116.8
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccC-CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEH-GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-- 93 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-- 93 (612)
..++.++|+||.+.|++.. .+.|+.++.+ |+.++.+.-. .+..-.|++..+++++++.-.++.+.+.++.....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 3599999999977776665 4788888875 6777765432 46788999999998888887899999999843221
Q ss_pred -ee--eeee-----ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC---Cceeee--------eccCCceEEEEE
Q 007229 94 -LK--NEFK-----VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS---GTTVGD--------FDGHSRRVLSCE 154 (612)
Q Consensus 94 -~~--~~~~-----~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~---~~~~~~--------~~~~~~~v~~~~ 154 (612)
.. ..+. .+...+..++|.|.++.|+++-+... ..++.++. ...+.. .......+.+++
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP---KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS---EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC---hhhEEEccccCccceeeccccccccccceeccccceE
Confidence 10 1111 24457999999999888887766653 35666653 221111 122445688999
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeecc--cc--c-----ccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--RE--H-----SNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~--~-----~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
++|....+++....+..+..+| .+|+.+..+ .. | -...-.|+|.++|+ |+..++-+..+++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 9999888888899999999999 556655442 21 1 13578899999996 4445666555444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-06 Score=80.80 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=131.5
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceE
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRV 150 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v 150 (612)
+..++.|+....+...|+.+.+ ..+......+++.-|+ .+++.|.+|...+ .+.+.+.++-+.++++..|++.|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G---~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASGVTIMR--YNNRNLFCGDTRG---TVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred Ccceeecchhhheeeeecccce-eeeeeeccCCceEEEE--ecCcEEEeecccc---eEEeecCCcCceeeeeeccccce
Confidence 4567777777788888988876 3333333333455554 3566777666666 46777888999999999999999
Q ss_pred EEEEEcCCCCEEEEEeec---------CCeEEEEeCCCCeeeecccccccceEEEEECCC-CCeEEEEEcCCcEEEEecC
Q 007229 151 LSCEFKPTRPFRIATCGE---------DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGK 220 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~ 220 (612)
.++... |+ +|++|+. |.-|+|||++..+.+..+.-+-++ .-+.|.|. ...+++++..|...+-|..
T Consensus 221 SDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 221 SDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 876654 55 6888875 557899999998887776655554 56678884 3467888889999998832
Q ss_pred C-CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 221 S-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+ +.+.............+..+.++++++.++.+..+|.|.+|.-
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 1111111111245566999999999999999999999999984
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00023 Score=69.32 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=69.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeeccccccc------ceE--EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCC
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSN------FVN--CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG 233 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 233 (612)
.++.++.++.+.-.|..+++.+........ .+. .++.. ++..++.++.++.|.-+|.++|+.+-.+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 477777889999999999988876543222 010 11111 225788888999999999999999888742211
Q ss_pred --ccccEE-EEEEecCCCEEEEEe---------CCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 234 --HHGSIY-AVSWSPDGKKVLTVS---------ADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 234 --~~~~v~-~i~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
....+. +..+. + ..++.++ .+|.+..+|. .+++.+-.+...
T Consensus 142 ~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~----~TG~~~W~~~~~ 194 (488)
T cd00216 142 VPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDV----ETGKLLWRFYTT 194 (488)
T ss_pred cCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEEC----CCCceeeEeecc
Confidence 000011 11222 2 3444443 3577888888 888887776653
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00051 Score=66.94 Aligned_cols=274 Identities=10% Similarity=0.018 Sum_probs=152.2
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecC-----CCeE--EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-----GRID--DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF 143 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~i~--~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~ 143 (612)
+..+..++.++.|.-.|..+++.+.+.-.... ..+. .++.. ++..++.++.++ .+...+.++|+.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g---~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDG---RLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCC---eEEEEECCCCCEeeee
Confidence 33566666788999999998875432211111 0000 01111 224565555555 4566667789988887
Q ss_pred ccCCce-----E-EEEEEcCCCCEEEEEee---------cCCeEEEEeCCCCeeeeccccccc-----------------
Q 007229 144 DGHSRR-----V-LSCEFKPTRPFRIATCG---------EDFLVNFYEGPPFKFKLSHREHSN----------------- 191 (612)
Q Consensus 144 ~~~~~~-----v-~~~~~~~~~~~~l~~~~---------~d~~i~~wd~~~~~~~~~~~~~~~----------------- 191 (612)
...... + ....+.. . +++.++ .++.+..+|..+++.+........
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred cCCCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 654321 1 1122222 2 344443 367899999999998877543211
Q ss_pred ---ce-EEEEECCCCCeEEEEEcCC------------------cEEEEecCCCCeeeeeeccCCccc----cEEEEEEe-
Q 007229 192 ---FV-NCIRFSPDGSKLISVSSDR------------------KGLIYDGKSGEKIGEFSSEDGHHG----SIYAVSWS- 244 (612)
Q Consensus 192 ---~v-~~~~~s~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~----~v~~i~~~- 244 (612)
.+ ...++.+.+..++.++.++ .+.-+|.++|+..-.+... .+.. ......+.
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEe
Confidence 01 1234455566788887665 6999999999998877421 1110 00001111
Q ss_pred ---cCCC---EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE----------------
Q 007229 245 ---PDGK---KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV---------------- 302 (612)
Q Consensus 245 ---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 302 (612)
-++. .++.++.+|.+...|. .+++.+-....... ......+.++++
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~----~tG~~~W~~~~~~~--------~~~~~~~~vyv~~~~~~~~~~~~~~~~~ 360 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDR----TTGKLISARPEVEQ--------PMAYDPGLVYLGAFHIPLGLPPQKKKRC 360 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEEC----CCCcEeeEeEeecc--------ccccCCceEEEccccccccCcccccCCC
Confidence 1333 5777888999999999 88888776553210 011111222222
Q ss_pred --EcCCEEEEEEcCCCCCCceeecC-cc------cce--eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 303 --SLGGIISIFSASNLDKAPLSFSG-HV------KNV--STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 303 --~~~~~i~~~~~~~~~~~~~~~~~-~~------~~v--~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
..+|.+.-+|..+.+.....-.+ +. .+. ..+.. . +..++.++.||.++.+|..+++..-...
T Consensus 361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~--g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-A--GNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-c--CCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 23456666665554433322211 00 011 11112 2 6788899999999999999998876654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-06 Score=80.41 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=136.8
Q ss_pred CCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEE
Q 007229 29 KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDD 107 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 107 (612)
++..++.|+ ...+..+|+.+.+..+...-....|+-++ .+++++.+|...|+|.+-|..+.+ ..+.+..|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 344555555 67788889998887776554444555554 468899999999999999999998 66799999999986
Q ss_pred EEECCCCCEEEEEeCCCCe------eeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe---CC
Q 007229 108 LQWSPDGLRIVACGDGKGK------SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE---GP 178 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd---~~ 178 (612)
+ .-.|..|++||-.... .++.||+...-+.+.-+.-+-++ .-+.|+|.-...++.++..|...+-| +.
T Consensus 223 f--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 F--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred e--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 5 4578899999865422 25677777766666555544444 55788888777899999999999988 33
Q ss_pred CCe-eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 179 PFK-FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 179 ~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
+.. .+..+......+..+++|++++.++.|..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 321 1222223345599999999999999999999999997
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00035 Score=67.10 Aligned_cols=242 Identities=14% Similarity=-0.002 Sum_probs=128.8
Q ss_pred ceeEEEEccCCCEEEEec--CC----EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-----------cCe
Q 007229 20 RGILISGNPKTDTILYCN--GR----SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-----------SGS 82 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-----------d~~ 82 (612)
.+...++||||+++|++- +| .++++|+++++.+...... ..-..+.|.+|++.++.... ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 344689999999999984 33 7999999999776532111 12234999999988766542 334
Q ss_pred EEEeecCCCcee-eeeeeecCCC--eEEEEECCCCCEEEEEeCCCCe-eeEEEEEecCC----ceeeeeccCCceEEEEE
Q 007229 83 VRIWGTHNGFVL-KNEFKVLSGR--IDDLQWSPDGLRIVACGDGKGK-SFVRAFMWDSG----TTVGDFDGHSRRVLSCE 154 (612)
Q Consensus 83 i~iwd~~~~~~~-~~~~~~~~~~--i~~~~~s~~~~~l~~~~~~~~~-~~i~i~~~~~~----~~~~~~~~~~~~v~~~~ 154 (612)
|..|++.+...- ...+...... ...+..++|+++|+.....+.. ..+.+...+.+ .....+......+....
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 888888876532 2233333332 6788999999998876555543 33444444443 23444443443343333
Q ss_pred EcCCCCEEEEEe--ecCCeEEEEeCCCCee---eecccccccceEEEEECCCCCeEEEE-EcCC--cEEEEecCCCCeee
Q 007229 155 FKPTRPFRIATC--GEDFLVNFYEGPPFKF---KLSHREHSNFVNCIRFSPDGSKLISV-SSDR--KGLIYDGKSGEKIG 226 (612)
Q Consensus 155 ~~~~~~~~l~~~--~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~ 226 (612)
-+..+.+.+.|- ...+.|.-.++..... ...+..+...+.--.+...+++|+.. ..++ .|+++++..+....
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 233444333342 2235666667766552 22444455533333333345555544 3343 47889987444444
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEE--eC--CCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTV--SA--DKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~--~~--dg~i~iw~~ 264 (612)
.+.. ...+.|..+...++++.+... +. -+++..||+
T Consensus 364 ~~~~--p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 364 EIPL--PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp EEES--SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred eecC--CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 4432 233445666655655544332 22 245666666
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00092 Score=62.70 Aligned_cols=252 Identities=17% Similarity=0.122 Sum_probs=166.2
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCE-EEEeeCcCeEEEeecCCCceeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEW-IASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-las~~~d~~i~iwd~~~~~~~~~ 96 (612)
....+++.|++..+.+.. .+.+...+............-...-..+++++++.. .++...+..|.+.|..+.+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455788899997776665 334444444422222211111134457889998874 44555568999999877764433
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 176 (612)
...+. ....++++|+++.+.++........+.+.+-.+++.+.....-..+ ..+++.|++..+.++-..++.|.+.|
T Consensus 112 ~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 112 IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 33333 7788999999998888776421114555555577777775443344 89999999997677777899999999
Q ss_pred CCCCeeee-c---ccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 177 GPPFKFKL-S---HREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 177 ~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
........ . ...-......+.++|+|+++.+.... +.+...|..++......... +.. ....+.+.|+|+.
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKA 266 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCE
Confidence 77765553 1 11222345678899999977766554 48999998888777652111 222 5667899999998
Q ss_pred EEEEeC-CCcEEEEEeecCCCCCeeEeeeecc
Q 007229 250 VLTVSA-DKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 250 l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
+.+... .+.+.+-|. .+......+...
T Consensus 267 ~yv~~~~~~~V~vid~----~~~~v~~~~~~~ 294 (381)
T COG3391 267 AYVANSQGGTVSVIDG----ATDRVVKTGPTG 294 (381)
T ss_pred EEEEecCCCeEEEEeC----CCCceeeeeccc
Confidence 888744 478888887 666666555443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00028 Score=62.78 Aligned_cols=223 Identities=13% Similarity=0.120 Sum_probs=145.0
Q ss_pred EEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee-
Q 007229 24 ISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV- 100 (612)
Q Consensus 24 ~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~- 100 (612)
..|.|+...|+.+. ++.|.-|+.++++... +. +...+.++..-.++..|+++.. -+.+++.+++... ..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-TLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-EEeccc
Confidence 45788888787776 7899999998776543 33 3444556555555556666633 4667777655421 11111
Q ss_pred ---c-CCCeEEEEECCCCCEEEEEeC------CCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 101 ---L-SGRIDDLQWSPDGLRIVACGD------GKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 101 ---~-~~~i~~~~~s~~~~~l~~~~~------~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. ....+.....|+|.+.+.... ........+|.++ .+..++.+..+-..-+.++||||++.+.++=+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1 135678889999988776655 1112234688888 6777777787778888999999999666666667
Q ss_pred CeEEEEeCCC--Cee-----eecccccccceEEEEECCCCCeEEEEEcCC-cEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 170 FLVNFYEGPP--FKF-----KLSHREHSNFVNCIRFSPDGSKLISVSSDR-KGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 170 ~~i~~wd~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
+.|.-|++.. +.. ...+....+..-.++...+|++-+++..+| .|.+|+.+ |+.+..+. -....++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---lP~~~~t~~ 260 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---LPVKRPTNP 260 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE---CCCCCCccc
Confidence 8888887652 111 111223445666777888887665444444 89999987 99988884 233667788
Q ss_pred EEec-CCCEEEEEeC
Q 007229 242 SWSP-DGKKVLTVSA 255 (612)
Q Consensus 242 ~~~~-~~~~l~~~~~ 255 (612)
+|-- +.+.|++.+.
T Consensus 261 ~FgG~~~~~L~iTs~ 275 (307)
T COG3386 261 AFGGPDLNTLYITSA 275 (307)
T ss_pred eEeCCCcCEEEEEec
Confidence 8853 4455555443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00047 Score=63.99 Aligned_cols=276 Identities=11% Similarity=0.015 Sum_probs=129.1
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC-ee-EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG-RV-IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
.|+.+.|.++...|+++...|.|.+|....+...+ +. -...... .........+..+.-.+..-. =++.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~di~~r~~---~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYN------FRRFSLNNSPGKLTDISDRAP---PSLK 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------------S--GGGSS-SEEE-GGG-----TT-S
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcc------cccccccCCCcceEEehhhCC---cccc
Confidence 47899999998899999999999999984322211 00 0000000 000000000111110000000 0000
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEE
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWR 394 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~ 394 (612)
.+-.+...+....++|++++.++ -.+++.|..+|.+.+.|++....+....-.+.
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~----------------------- 128 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRES----------------------- 128 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG------------------------
T ss_pred cccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeecccccc-----------------------
Confidence 11122334455678999999887 78999999999999999987765543220000
Q ss_pred EecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc-----cCC---CeEE
Q 007229 395 VPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA-----PDG---SEAI 466 (612)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~---~~l~ 466 (612)
.........++++.|+ .|+ -.++
T Consensus 129 -------------------------------------------------~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 129 -------------------------------------------------FLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp --------------------------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred -------------------------------------------------ccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 0000011123334333 232 3577
Q ss_pred EEecCCeEEEEEccC---cccc--cceeeccccCceEEEE-EcCC---------------------CcEEEEEcCCCeEE
Q 007229 467 VGGQNGKLHIYSISG---NTLT--EEMVLEKHRGAITVIQ-YSPD---------------------VSMFASADGNREAI 519 (612)
Q Consensus 467 ~~~~dg~v~i~d~~~---~~~~--~~~~~~~~~~~i~~~~-~s~~---------------------~~~l~~~~~d~~i~ 519 (612)
+|+..|.+.+|.+.- +... .......+.++|..+. |+.+ ..+++.+ .+..+|
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceE
Confidence 888888888887641 2111 0111123445555544 3211 1144444 457899
Q ss_pred EEecCCcceeeecccccccceeEEEec-----CCCcEEEEeecCcEEEEEEccCCCcceeeeeccc----ccCeeeEEEe
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWS-----PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH----LGGVYGVAFM 590 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h----~~~v~~~~~~ 590 (612)
++...+.+...+.+. .......+.+- ..+..|++-..+|.++++.+.. - +.+.....+ ...+....++
T Consensus 239 v~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-L-kei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-L-KEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp EE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----EEEEEE-SS---HHHHTT-EE-
T ss_pred EEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-c-hHhhcccCCCccccccccccEEC
Confidence 999998887766553 32334444552 3566788889999999999997 4 455444432 2345566777
Q ss_pred -cCceEEEcc
Q 007229 591 -DDFNVVSSG 599 (612)
Q Consensus 591 -~~~~l~s~~ 599 (612)
+|+.++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 666655544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00021 Score=67.37 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=124.4
Q ss_pred EEEEccCCCEEEEecCC------------EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC
Q 007229 23 LISGNPKTDTILYCNGR------------SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~------------~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~ 90 (612)
.++.+|.|.-||...+. .|.||+... +.+..+.-..+.|.++.|+.+.++++ ...||.++++|+..
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~e~Lvv-V~~dG~v~vy~~~G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTDDEELVV-VQSDGTVRVYDLFG 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECCCCeEEE-EEcCCEEEEEeCCC
Confidence 46778888888887654 588998775 44554443348999999999766554 45899999999874
Q ss_pred Cce--e---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee---ccCCc------eEEE-EEE
Q 007229 91 GFV--L---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF---DGHSR------RVLS-CEF 155 (612)
Q Consensus 91 ~~~--~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~------~v~~-~~~ 155 (612)
... + ..........+....+..+|-.++ ..+.. ++.+..++.....+.+ ..... .... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~--~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNR--FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCe--EEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 330 0 001111112233334444552222 22221 2222222221111111 11110 1111 234
Q ss_pred cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 156 KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 156 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
+.+.. ..+....++.+.+-+-...+. + ...+++..|+.||+++++|.-..+|.+.+.+..-.+...++.. ...
T Consensus 187 ~~~~~-~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--~~~ 259 (410)
T PF04841_consen 187 SSDRV-VEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--DSK 259 (410)
T ss_pred ecCcc-eEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--CcC
Confidence 44444 244444455555443322211 2 1246799999999999999999999999998766666666632 234
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
.....+.|.-+...++.- ...+.+..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 566788887654333322 33455554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0018 Score=58.30 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=77.8
Q ss_pred EEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec
Q 007229 106 DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 185 (612)
+.=+|.+||++|+.+++..+...+.+.++++++..+--.+..........+|+++. ++-......++--|+.+++....
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~-~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA-LYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE-EEEEETTTEEEEEETTT--EEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe-EEEEECCCeEEEEECCcCcEEEE
Confidence 34478999999988887554434444455565544433332233335667788885 54444556888899999887666
Q ss_pred ccccccceEEEEEC--CCCCeEEEEEc----------------------CCcEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 186 HREHSNFVNCIRFS--PDGSKLISVSS----------------------DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 186 ~~~~~~~v~~~~~s--~~~~~l~~~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
+......+-...|. .|+..++-.-. ...|.-.|+.+|+....+ .....+..+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~----~~~~wlgH~ 193 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF----EDTDWLGHV 193 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE----EESS-EEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE----ecCccccCc
Confidence 66566655545553 45555443211 123555677777765555 455667778
Q ss_pred EEecCCCEEEEEeCCC-----cEEEEEee
Q 007229 242 SWSPDGKKVLTVSADK-----SAKVWEIL 265 (612)
Q Consensus 242 ~~~~~~~~l~~~~~dg-----~i~iw~~~ 265 (612)
.|+|....+++-+..| .-++|-++
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 8888544444443333 13566664
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0029 Score=61.90 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc-ccE-------EEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH-GSI-------YAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v-------~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+..|+.++.++.|.-.|.++|+.+-++....... ... ..+++. +..++.++.|+.+.-.|. .+++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa----~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDA----KTGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEEC----CCCCE
Confidence 4567777888899999999999887763211100 000 012222 345777788999999998 88988
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCC
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKA 319 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 319 (612)
+-....................++.++++.. +|.|..+|..+.+..
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 8776543211111111112222566777653 578888887665543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00044 Score=65.11 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=108.7
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE-E
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF-M 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~-~ 133 (612)
+.........+.++|+|++++.+ .||.-.|+.....+. ...+.-...+|.+.++ +|+..... .+.|+ +
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~------k~~G~g~~~vw~~~n~-yAv~~~~~---~I~I~kn 96 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN------KAFGSGLSFVWSSRNR-YAVLESSS---TIKIYKN 96 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE------EEEEE-SEEEE-TSSE-EEEE-TTS----EEEEET
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc------cccCceeEEEEecCcc-EEEEECCC---eEEEEEc
Confidence 44455668899999999999995 577888887443321 1223455688999665 44444433 24553 2
Q ss_pred ecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCc
Q 007229 134 WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
.+ .+....++.. ..+..+-. |. +|...+. +.|.+||.++++.+..+... +|..+.|++++++++..+. ..
T Consensus 97 ~~-~~~~k~i~~~-~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~ 166 (443)
T PF04053_consen 97 FK-NEVVKSIKLP-FSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-DS 166 (443)
T ss_dssp TE-E-TT-----S-S-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--S
T ss_pred Cc-cccceEEcCC-cccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-Ce
Confidence 22 1111122211 12333322 66 3555444 48999999999999888643 4899999999999998875 46
Q ss_pred EEEEecCCC-----------CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 214 GLIYDGKSG-----------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 214 i~vwd~~~~-----------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
+.+++.... .....+ ..-...|.+.+|..+ .++..... .++.+-- .....+..+...
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~---~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~~----Ge~~~i~~ld~~-- 234 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELI---HEISERIKSGCWVED--CFIYTTSN-HLKYLVN----GETGIIAHLDKP-- 234 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEE---EEE-S--SEEEEETT--EEEEE-TT-EEEEEET----TEEEEEEE-SS---
T ss_pred EEEEEecchhcccccccCchhceEEE---EEecceeEEEEEEcC--EEEEEcCC-eEEEEEc----CCcceEEEcCCc--
Confidence 888764432 022222 122567888899865 44444444 6766321 122222222211
Q ss_pred cccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 283 NAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
..+.+.....+.++....++.+..+.+.
T Consensus 235 ----~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 235 ----LYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -----EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ----eEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 1223333334667777777666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0011 Score=62.29 Aligned_cols=221 Identities=12% Similarity=0.091 Sum_probs=151.5
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC---cCeEEEeecCCCcee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV---SGSVRIWGTHNGFVL 94 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~---d~~i~iwd~~~~~~~ 94 (612)
....+++++++..+.... .+.|.+.|.++.+......- ......++++|+++.+..+.. ++++.+.|..+.+..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345789999999777666 68999999887777665432 226678999999987777654 688999999988854
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceee-e---eccCCceEEEEEEcCCCCEEEEEeecC-
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVG-D---FDGHSRRVLSCEFKPTRPFRIATCGED- 169 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~l~~~~~d- 169 (612)
.. ...-..+ ..++++|+|+.+..+....+ .+.+.+.+.....+ . ...-......+.++|++.+..+....+
T Consensus 154 ~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~--~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 154 AT-IPVGNTP-TGVAVDPDGNKVYVTNSDDN--TVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EE-EecCCCc-ceEEECCCCCeEEEEecCCC--eEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 44 3333334 89999999998887774443 34555544333332 1 112223446789999999655555544
Q ss_pred -CeEEEEeCCCCeeeec-cc-ccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 170 -FLVNFYEGPPFKFKLS-HR-EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 170 -~~i~~wd~~~~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
+.+...|..++..... .. +.. ....+..+|+|+.+.+... .+.+.+.|..+................+..+++.+
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 6999999998877665 22 222 5667899999999888744 48899999888887777643323334456666655
Q ss_pred C
Q 007229 246 D 246 (612)
Q Consensus 246 ~ 246 (612)
.
T Consensus 309 ~ 309 (381)
T COG3391 309 L 309 (381)
T ss_pred e
Confidence 3
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0011 Score=55.81 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=153.0
Q ss_pred ceeEEEEccCCCE-EEEec--CCEEEEEeCCCCceeeEeccCCCc--eEEEEECCCCCEEEEeeC-----cCeEEEeecC
Q 007229 20 RGILISGNPKTDT-ILYCN--GRSVLIRYLDKPLHVEFYGEHGYP--VTVARYSPNGEWIASADV-----SGSVRIWGTH 89 (612)
Q Consensus 20 ~v~~~~~s~d~~~-l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~las~~~-----d~~i~iwd~~ 89 (612)
+...++|+|.-.. ++++- +..-.++|..+.+.+.++...++. --.=.|||||++|...-. -|.|-|||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3345778886554 34444 557778898887766654322111 112479999999987643 3779999999
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
.+-+...++..|.-....+.|.+||+.++.+...- +.. -+-++. -|-.-+..
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGI-----eth-pdfgR~----------------------~lNldsMe 200 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGI-----ETH-PDFGRT----------------------ELNLDSME 200 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCce-----ecc-cccCcc----------------------ccchhhcC
Confidence 77666678888998999999999999998875431 110 000110 01111222
Q ss_pred CeEEEEeCCCCeeeec--cc--ccccceEEEEECCCCCeEEEEEcCCc-----EEEEecCCCCeeeeeeccC----Cccc
Q 007229 170 FLVNFYEGPPFKFKLS--HR--EHSNFVNCIRFSPDGSKLISVSSDRK-----GLIYDGKSGEKIGEFSSED----GHHG 236 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~--~~--~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~----~~~~ 236 (612)
-++.+.|..+++++.. +. .+.-.|..++.-+||..++.+-..|. -.+=-...++.+..+..++ ....
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 2334444444444332 33 35567888999999876655433322 1122223344443332111 2234
Q ss_pred cEEEEEEecCCCEEEEEeCC-CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 237 SIYAVSWSPDGKKVLTVSAD-KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
.|-+++.+.+..+++..+-. +...+||. .++..+..-.... ..++....+-+++.+.+|.+.+++
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da----~tG~vv~~a~l~d-------aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDA----ATGAVVSEAALPD-------AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEc----CCCcEEecccccc-------cccceeccCceEEecCCceEEecc
Confidence 57788888766666655544 56779999 8998887655442 334445567778888888888775
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0051 Score=58.18 Aligned_cols=217 Identities=12% Similarity=0.041 Sum_probs=108.4
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-------cccceEEEEee
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-------YDARIKCLAAV 379 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~~i~~~~~~ 379 (612)
.|.+|+.... .+..+.-..+.+..+.|.. ...|+.-..||.++++|+.... ...... ....+....+.
T Consensus 62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCC--EeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 3566653322 2233332337888999987 6778888899999999997555 111110 11222222332
Q ss_pred ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc
Q 007229 380 EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA 459 (612)
Q Consensus 380 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 459 (612)
+.-++.-..++.+...+-.............+.........+ ....+ ..++
T Consensus 137 ~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~---------------------------~~~~i--~~l~ 187 (410)
T PF04841_consen 137 KNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP---------------------------SWTVI--PLLS 187 (410)
T ss_pred CCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccc---------------------------ccccc--eEee
Confidence 222333344555544432221100000000000000000000 00001 2344
Q ss_pred cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccc
Q 007229 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR 539 (612)
Q Consensus 460 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 539 (612)
.+....+....++.+.+.+-...+. +. ..+++..|++||+++++|.-..+|.+.+....-.+...+.-..-...
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~-----i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ-----ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc-----cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 4555555555556666554332211 21 24589999999999999999889998888766555543333323456
Q ss_pred eeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 540 INCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 540 i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
...+.|.-+...++.- ...+.+..
T Consensus 262 p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 262 PKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CcEEEEECCCcEEEEe--CCEEEEEC
Confidence 6777777654333222 33455554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00077 Score=66.28 Aligned_cols=205 Identities=13% Similarity=0.123 Sum_probs=114.5
Q ss_pred cCCCceEEEEECCCCCEEEEee------CcC--eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 57 EHGYPVTVARYSPNGEWIASAD------VSG--SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
+....+...++||||+.+|... .|. .|.+++... . ...... ......-.|+|||+.|++..+....
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~-~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~-- 420 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-V-AVQVLE--GHSLTRPSWSLDADAVWVVVDGNTV-- 420 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-c-ceeeec--CCCCCCceECCCCCceEEEecCcce--
Confidence 3345788999999999888764 244 444445422 2 222222 2348889999999988877643210
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
. ++......+.+.+.++..++... .....|..+.|||||..++..
T Consensus 421 -------------------------~-------~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 421 -------------------------V-------RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred -------------------------E-------EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEE
Confidence 0 11111223455555666555433 334569999999999988876
Q ss_pred EcCCcEEE---EecCCCCeee-eee-ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcc
Q 007229 209 SSDRKGLI---YDGKSGEKIG-EFS-SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283 (612)
Q Consensus 209 ~~dg~i~v---wd~~~~~~~~-~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 283 (612)
. ++.|.+ -....|+... ... ........+.++.|.+++.+ +++..++.-.+|.+.-++..... +.. .
T Consensus 466 ~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~---~~~---~ 537 (591)
T PRK13616 466 I-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDA---LPS---R 537 (591)
T ss_pred E-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEecCCccccc---cCC---C
Confidence 6 577776 5545554111 100 01123344688999999885 45566666667776444333222 111 1
Q ss_pred ccceeeeeeeccCCEEEEEEcCCEEEE
Q 007229 284 AVEDMLVGCLWQNDHLITVSLGGIISI 310 (612)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ 310 (612)
.......++.-....+++...++.+.+
T Consensus 538 n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 538 NLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred CccCceEEEecCCceEEEEcCCceEEe
Confidence 112233334444455666666664444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0032 Score=55.75 Aligned_cols=270 Identities=12% Similarity=0.116 Sum_probs=122.0
Q ss_pred cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee-----cccceEEEEeeccEEEEecCCCeEEEEecCCC
Q 007229 326 HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-----YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~ 400 (612)
-...+..+.|.+. ..-+++| ..+.|. -..+.++.-..... .......+.+.++..+.++..+.+..-. ..+
T Consensus 15 t~~~l~dV~F~d~-~~G~~VG-~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~-DgG 90 (302)
T PF14870_consen 15 TDKPLLDVAFVDP-NHGWAVG-AYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTT-DGG 90 (302)
T ss_dssp -SS-EEEEEESSS-S-EEEEE-TTTEEE-EESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEES-STT
T ss_pred CCCceEEEEEecC-CEEEEEe-cCCEEE-EECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEec-CCC
Confidence 3457788888842 3344444 445442 22233322221111 1234567777555555556555433222 122
Q ss_pred CCCcccee--ccCCCcceeeecCCCCcEEEEEeeccEEEee-cccceeee--cccceEEEEEEccCCCeEEEEecCCeEE
Q 007229 401 ECGDAEHI--DVGSQPLDLSLALSSPELALVSTESGVILLD-SLKVMSKI--DLGFTVTACAIAPDGSEAIVGGQNGKLH 475 (612)
Q Consensus 401 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 475 (612)
..-..... ..+..+..+....++ ...+++....+..-. .++.-+.+ .....+..+..++||++++++.......
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~ 169 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYS 169 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEE
Confidence 11101111 122223333322222 333344444444333 33322222 2456788888999999999987766666
Q ss_pred EEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec-CCcceeee---cccccccceeEEEecCCCcE
Q 007229 476 IYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR-VSKEVKLN---NMLFHTARINCLAWSPSSTM 551 (612)
Q Consensus 476 i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~-~~~~~~~~---~~~~~~~~i~~~~~s~~~~~ 551 (612)
-||....... ..-..-..+|.+|.|+|++.+.+.+ ..|.|+.=+. ...+.-.+ ....-.-.+..++|.+++..
T Consensus 170 s~~~G~~~w~--~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 170 SWDPGQTTWQ--PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp EE-TT-SS-E--EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred EecCCCccce--EEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 7776543331 2222345789999999998877655 7788888772 22222111 01112334789999999888
Q ss_pred EEEeecCcEEEEEEccCCCcceeeee---cccccCeeeEEEecCceEEEccCCCeEEEE
Q 007229 552 VATGSIDTCVIIYEIGKPASSRITIK---NAHLGGVYGVAFMDDFNVVSSGEDACIRVW 607 (612)
Q Consensus 552 l~s~~~d~~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w 607 (612)
.|+|+... + +...+. + +..+.. ..-......+.|.+.+.-+..+.+|.|.-|
T Consensus 247 wa~gg~G~-l-~~S~Dg-G-ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 247 WAVGGSGT-L-LVSTDG-G-KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEESTT--E-EEESST-T-SS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred EEEeCCcc-E-EEeCCC-C-ccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 88776542 2 233333 4 333332 233456889999955565666778888766
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0026 Score=54.58 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=103.0
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEEEEEcCCcEEEEecC
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGK 220 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 220 (612)
.+.+-...+..++|.|+.+.++++....+.|...+.. |+.+..+.-. .+..-.+++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4566667799999999988788888889999988974 6776664322 3568889999888777765568999999884
Q ss_pred CCCe------eeeee--ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 221 SGEK------IGEFS--SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 221 ~~~~------~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
.... ...+. ....++..+..++|+|.++.|+.+-+..-..+|.+.... ....+.......
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-~~~~~~~~~~~~----------- 162 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-GGFDLFVSDDQD----------- 162 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE-HH-----------
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-Cccceeeccccc-----------
Confidence 3221 11221 122355679999999988888888777777788773211 011111000000
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
..........+.++.+.+..+.+++....+..|..+|....
T Consensus 163 ---------------------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 163 ---------------------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR 203 (248)
T ss_dssp ---------------------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred ---------------------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence 00011233456778888666788888888888988885443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0092 Score=59.56 Aligned_cols=539 Identities=12% Similarity=0.055 Sum_probs=281.4
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEE-ECC---CCCEEEEeeCcCeE--
Q 007229 12 CAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVAR-YSP---NGEWIASADVSGSV-- 83 (612)
Q Consensus 12 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~-~s~---d~~~las~~~d~~i-- 83 (612)
..|......+.+==-+|..-.++.+.++.+.++-++... ++.+. +--+.|..++ |-| +..+|+.+..+.++
T Consensus 9 qkpT~V~~av~gnFts~e~~nlivAk~~~lei~~~~~~G-Lq~i~sv~ifg~I~~i~~fRp~g~~kD~LfV~t~~~~~~i 87 (1096)
T KOG1897|consen 9 QKPTAVVTAVVGNFTSPENLNLIVAKGNRLEILLVEPNG-LQPITSVPIFGTIATIALFRPPGSDKDYLFVATDSYRYFI 87 (1096)
T ss_pred cCCceEeEEEeecccCccceeeeeeccceEEEEeecccc-ceeeEeeccceeEEEEEeecCCCCCcceEEEEECcceEEE
Confidence 334333434443334667777788888877777655332 22222 2334555554 555 34678888777664
Q ss_pred EEeecCCCceeeeeeeecCC----------CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC------ceeeee--cc
Q 007229 84 RIWGTHNGFVLKNEFKVLSG----------RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG------TTVGDF--DG 145 (612)
Q Consensus 84 ~iwd~~~~~~~~~~~~~~~~----------~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~------~~~~~~--~~ 145 (612)
.-||....+. ....|+. .=..+...|+++.+...-.++ .+.+..|++. .....+ .-
T Consensus 88 L~~d~~~~~v---v~~a~~~v~dr~gr~s~~g~~~~VDp~~R~Igl~~yqg---l~~vIp~d~~~sht~~s~l~~fn~rf 161 (1096)
T KOG1897|consen 88 LEWDEESIQV---VTRAHGDVSDRSGRPSDNGQILLVDPKGRVIGLHLYQG---LFKVIPIDSDESHTGGSLLKAFNVRF 161 (1096)
T ss_pred EEEccccceE---EEEecccccccccccCCCceEEEECCCCcEEEEEeecC---eEEEEEecccccccCccccccccccc
Confidence 4577653331 1222221 223456788888666666665 5677777753 222222 11
Q ss_pred CCceEEEEEEcCC--CCEEEEEe---ecCCeEEEEeCCCC--eeeecc----cccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 146 HSRRVLSCEFKPT--RPFRIATC---GEDFLVNFYEGPPF--KFKLSH----REHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 146 ~~~~v~~~~~~~~--~~~~l~~~---~~d~~i~~wd~~~~--~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
..-.|.+++|-.+ .+ .+++. +.+..++.|++.-+ +..... -.+.....-..=+|.|..|+.|.. - |
T Consensus 162 del~v~Di~fly~~s~p-t~~vly~Ds~~~Hv~~yelnl~~ke~~~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~-~-I 238 (1096)
T KOG1897|consen 162 DELNVYDIKFLYGCSDP-TLAVLYKDSDGRHVKTYELNLRDKEFVKGPWSNNVDNGASMLIPVPSPIGGVLVIGEE-F-I 238 (1096)
T ss_pred CcceEEEEEEEcCCCCC-ceEEEEEcCCCcEEEEEEeccchhhccccccccccccCCceeeecCCCCceEEEEeee-E-E
Confidence 2234666766432 22 24443 33456666654433 111111 011111222222344445554432 1 2
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEee--eeccCccccceeeeee
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKT--FASSTSNAVEDMLVGC 292 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 292 (612)
.-- ..+..............-+..-...+++...+.+..+|.+...-+.. .++.... ++...-....-...-+
T Consensus 239 ~Y~--~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~---~~e~~s~~~lkve~lge~siassi~ 313 (1096)
T KOG1897|consen 239 VYM--SGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSH---TGETVSGLDLKVEYLGETSIASSIN 313 (1096)
T ss_pred EEe--eCCceeEecccccCCceEEEcccccCCccEEEEecCCCcEEEEEeec---ccccccceEEEEEecCCcchhhhhh
Confidence 111 11222222211101111122233456888888999999988777631 2222222 1111101111111122
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCC---c--eeecCcccceeEEEEEec---CCcEEEEEe---cCCcEEEEEcCCce
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKA---P--LSFSGHVKNVSTLTALKI---SQQTILSSS---YDGAIIKWIRGVGY 361 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~---~--~~~~~~~~~v~~~~~~~~---~~~~l~~~~---~dg~i~~wd~~~~~ 361 (612)
..+++.+++|+.-|.-.+..+...... . ..--..-+++..+...+. .+..+++++ .||++++....-+-
T Consensus 314 ~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I 393 (1096)
T KOG1897|consen 314 YLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGI 393 (1096)
T ss_pred cccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccccc
Confidence 334889999999887777766543322 1 111224458888888732 345566544 47899988644332
Q ss_pred eeeecee--cccceEEEE--e---eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeecc
Q 007229 362 SSKLEKK--YDARIKCLA--A---VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESG 434 (612)
Q Consensus 362 ~~~~~~~--~~~~i~~~~--~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (612)
....... .-..++.+. + .+++++.+-.+. -++..+... ........+......+..+.-....++--..+.
T Consensus 394 ~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~e-Trvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~ 471 (1096)
T KOG1897|consen 394 DELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISE-TRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTSNS 471 (1096)
T ss_pred ceeeEeecCCccceeEeeccccccCCcEEEEEeccc-eEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEeccc
Confidence 2211111 223344444 2 223444443333 334444333 222333444445555666655555577777788
Q ss_pred EEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC--C----cE
Q 007229 435 VILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--V----SM 508 (612)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--~----~~ 508 (612)
+++++......+...+..++..+.+.+...+++++.++.+...++..+.+. ...-..-...|.|+.++|- + ++
T Consensus 472 iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~-e~~~~~~e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 472 IRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR-EVSHKEFEYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred EEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeecccee-eeeeheecceeEEEecccCCCCCCcceE
Confidence 888886666666667777888888888888888888888887787766531 2222334568999999983 2 37
Q ss_pred EEEEcCCCeEEEEe-cCCcceeeec-ccc--cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 509 FASADGNREAIVWD-RVSKEVKLNN-MLF--HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 509 l~~~~~d~~i~iwd-~~~~~~~~~~-~~~--~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++.|..+..+.+-- ......+... +.+ -...|.-.+|--|..+|.++..||.+.-|-+..
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 88887776655442 2333322221 111 123455566666788999999999988877665
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0064 Score=58.51 Aligned_cols=208 Identities=12% Similarity=0.102 Sum_probs=114.9
Q ss_pred ceEEEEECCCCCEEEEe-eCc----CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee------eE
Q 007229 61 PVTVARYSPNGEWIASA-DVS----GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS------FV 129 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~------~i 129 (612)
.+....+||||++||.+ +.. ..+++.|+.+++.+...+.... ...+.|.+|++.|+....+.... .-
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44478999999999865 333 4599999999975544433322 22399999999988877555322 34
Q ss_pred EEEEecCCcee----eeeccCC--ceEEEEEEcCCCCEEEEEeecCC---eEEEEeCCCC----eeeecccccccceE-E
Q 007229 130 RAFMWDSGTTV----GDFDGHS--RRVLSCEFKPTRPFRIATCGEDF---LVNFYEGPPF----KFKLSHREHSNFVN-C 195 (612)
Q Consensus 130 ~i~~~~~~~~~----~~~~~~~--~~v~~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~----~~~~~~~~~~~~v~-~ 195 (612)
.|+.+..|... ..+.... .....+..+++++++++...... .+.+.++..+ .....+......+. .
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 67777644332 2333333 22678899999998777665544 4777787764 22222333333333 3
Q ss_pred EEECCCCCeEEEEEc---CCcEEEEecCCCCe---eeeeeccCCccc--cEEEEEEecCCCEEEE-EeCCC--cEEEEEe
Q 007229 196 IRFSPDGSKLISVSS---DRKGLIYDGKSGEK---IGEFSSEDGHHG--SIYAVSWSPDGKKVLT-VSADK--SAKVWEI 264 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~---~~~~~~~~~~~~--~v~~i~~~~~~~~l~~-~~~dg--~i~iw~~ 264 (612)
+... .+.+++.... .+.|.-.++..... ...+. .+.. .+..+... +++|+. .-.++ .|+++++
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEEC
Confidence 3333 3434443322 35677777777653 21221 3333 45555543 444444 44443 5778887
Q ss_pred ecCCCCCeeEeeeecc
Q 007229 265 LEDGSGGRVIKTFASS 280 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~ 280 (612)
..+.........
T Consensus 357 ----~~~~~~~~~~~p 368 (414)
T PF02897_consen 357 ----DDGKESREIPLP 368 (414)
T ss_dssp ----T-TEEEEEEESS
T ss_pred ----CCCcEEeeecCC
Confidence 424444444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00036 Score=68.53 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=105.9
Q ss_pred CceeEEEEccCCCEEEEec-------C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---------
Q 007229 19 GRGILISGNPKTDTILYCN-------G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--------- 80 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-------~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--------- 80 (612)
..+...++||||+.+|+.. + ..|.+++... .......+. ..+.-.|+|||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 3678999999999999986 3 2666666533 333333433 38899999999988877532
Q ss_pred ---CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE---EEecCCc-ee---eee-ccCCce
Q 007229 81 ---GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA---FMWDSGT-TV---GDF-DGHSRR 149 (612)
Q Consensus 81 ---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i---~~~~~~~-~~---~~~-~~~~~~ 149 (612)
+.+.+.++..++ ... ...+.|..+.|||||++++...... +.+ ..-+.|. .+ ..+ .+-...
T Consensus 427 ~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~~g~----v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMIIGGK----VYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred CCCceEEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEECCE----EEEEEEEeCCCCceeecccEEeecccCCc
Confidence 223333444333 111 3356799999999999999887532 222 2222343 11 112 223344
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-cc--cccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-RE--HSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
+..+.|.+++. |+.+..++...+|.+.-....... .. ...++.+++=+++ .++....++.+.
T Consensus 499 ~~~l~W~~~~~--L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDS--LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCE--EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 68899999997 334444444455543322111111 22 3566777777753 455555566333
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0014 Score=57.29 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=94.8
Q ss_pred ceeEEEEccCCCEEEEec--C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee-cCCCcee
Q 007229 20 RGILISGNPKTDTILYCN--G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG-THNGFVL 94 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd-~~~~~~~ 94 (612)
.+.+.++|+||+.+|+.. + ..++++....... ..+.+ ..++.-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999998876 4 4566655443222 22333 3888999999988887777666777774 3333322
Q ss_pred eeeeeec--CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CC------ceeeeeccCCceEEEEEEcCCCCEEE
Q 007229 95 KNEFKVL--SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SG------TTVGDFDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 95 ~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~------~~~~~~~~~~~~v~~~~~~~~~~~~l 163 (612)
....... .+.|..+.+||||.+++....+.+...+.+-... .+ .+..........+..++|.+++..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222222 2289999999999999988743322233333322 33 12222234457899999999998544
Q ss_pred EEeecCCeEEE
Q 007229 164 ATCGEDFLVNF 174 (612)
Q Consensus 164 ~~~~~d~~i~~ 174 (612)
+....++.+..
T Consensus 182 ~~~~~~~~~~~ 192 (253)
T PF10647_consen 182 LGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCceeE
Confidence 44444554444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0046 Score=55.61 Aligned_cols=230 Identities=12% Similarity=0.100 Sum_probs=136.5
Q ss_pred cCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee----------
Q 007229 28 PKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE---------- 97 (612)
Q Consensus 28 ~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~---------- 97 (612)
..++.|+.|.+..+++++...+.....+. +...|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 45778888885459999994333333232 333499999999887777764 599999998865532210
Q ss_pred ---eeecCCCeEEEE---ECCCCCEEEEEeCCCCeeeEEEEEecCC-----ceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 98 ---FKVLSGRIDDLQ---WSPDGLRIVACGDGKGKSFVRAFMWDSG-----TTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 98 ---~~~~~~~i~~~~---~s~~~~~l~~~~~~~~~~~i~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
.......+...+ -...+.+|+++-.. .+.++.|... +..+.+. -.+.+..++|.++ .++.|
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk----~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~ 154 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK----KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVG 154 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECC----EEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEE
Confidence 111222344444 12234455555554 4788888853 3444444 3478889999844 46666
Q ss_pred ecCCeEEEEeCCCCeeeecccc------------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 167 GEDFLVNFYEGPPFKFKLSHRE------------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
..++ ..+.|+.++.....+.. ...++..+.. +++.+|++ .|..-.+.| ..|+....... .-
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~-~~G~~~r~~~i--~W 227 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVN-KNGEPSRKSTI--QW 227 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEc-CCCCcCcccEE--Ec
Confidence 6554 88888887655433211 1123444443 34566654 344444445 45554441111 23
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
...+.++++. ..+++.... +.|.+|++ .+++.++.+....
T Consensus 228 ~~~p~~~~~~--~pyli~~~~-~~iEV~~~----~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 228 SSAPQSVAYS--SPYLIAFSS-NSIEVRSL----ETGELVQTIPLPN 267 (275)
T ss_pred CCchhEEEEE--CCEEEEECC-CEEEEEEC----cCCcEEEEEECCC
Confidence 3456677774 457777655 56999999 8999998887654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0028 Score=57.02 Aligned_cols=238 Identities=16% Similarity=0.101 Sum_probs=128.3
Q ss_pred CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
..++.|+.|+.+| +.+++.......... .+..+|..+...|+-+.+++-+ |+.+.++++ ...........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L----~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELNLLLVLS-DGQLYVYDL----DSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccCEEEEEc-CCccEEEEc----hhhcccccccc
Confidence 3577899999888 999998444444444 2344499999999888777764 599999998 33322221100
Q ss_pred cCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE-EEecCCcEEEEEecCCcEEEEEcC
Q 007229 280 STSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT-ALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
..... .............+...+ .....+...+.......|.+|...
T Consensus 75 ~~~~~--------------------------------~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~ 122 (275)
T PF00780_consen 75 LAFPK--------------------------------SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWN 122 (275)
T ss_pred ccccc--------------------------------cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEE
Confidence 00000 000000001112222222 111113333444445588888776
Q ss_pred Ccee----eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccC----------CCcceeeecCCCC
Q 007229 359 VGYS----SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG----------SQPLDLSLALSSP 424 (612)
Q Consensus 359 ~~~~----~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 424 (612)
.... ....-.....+..+.+.++.++.+..++ ..+.|+.++........... ..+..+...++ .
T Consensus 123 ~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (275)
T PF00780_consen 123 DPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N 200 (275)
T ss_pred CCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c
Confidence 5311 1122226688889999888888877544 67778776554322111111 11222222222 3
Q ss_pred cEEEEEeeccEEEeeccccee--eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc
Q 007229 425 ELALVSTESGVILLDSLKVMS--KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 484 (612)
.+++....-++.+-..++..+ .+.-...+.++++. ..+|+.... +.|.||++.++++
T Consensus 201 e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 201 EFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred eEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcE
Confidence 555555444454444555444 34445566777774 346666555 5599999999987
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0012 Score=61.30 Aligned_cols=242 Identities=16% Similarity=0.153 Sum_probs=126.3
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCce-------------------------------------------eeEe
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLH-------------------------------------------VEFY 55 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~-------------------------------------------~~~~ 55 (612)
.|++++|+++..-|+++. .|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988888887 78888886431110 1112
Q ss_pred ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee-eee------cCCCeEEEEECC-----CC---CEEEEE
Q 007229 56 GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE-FKV------LSGRIDDLQWSP-----DG---LRIVAC 120 (612)
Q Consensus 56 ~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~-~~~------~~~~i~~~~~s~-----~~---~~l~~~ 120 (612)
....++|++++.|.= -++|.|..+|.+.|.|+.....+... +.. ....++++.|+- |+ -.|+++
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 234689999999844 49999999999999999776643221 111 223577888862 33 345555
Q ss_pred eCCCCeeeEEEEEecCCce----eeeeccCCceEEEEE-EcCCC--------------------CEEEEEeecCCeEEEE
Q 007229 121 GDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCE-FKPTR--------------------PFRIATCGEDFLVNFY 175 (612)
Q Consensus 121 ~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~-~~~~~--------------------~~~l~~~~~d~~i~~w 175 (612)
.+.+....++|..-..+.- ......+.++|..+. |+.+. +.+++.+ .+..++++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEE
Confidence 5555321222211112221 112234666766665 32221 1123333 35679999
Q ss_pred eCCCCeeeecccccccceEEEEEC-----CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC-CccccEEEEEEecCCCE
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFS-----PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED-GHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~ 249 (612)
...+.+..............+.+- ..+..|++-..+|.++++.+..-+.+....... .....+...+++++|+.
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence 988877665543332233344452 356678888999999999999988888775421 12234446677888886
Q ss_pred EEEEeCCCcEEEEEe
Q 007229 250 VLTVSADKSAKVWEI 264 (612)
Q Consensus 250 l~~~~~dg~i~iw~~ 264 (612)
++..+. ..+.++.+
T Consensus 321 ~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 321 FYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEE-SS-SEEEEEEE
T ss_pred EEEeCc-ccEEEEEE
Confidence 666543 35555555
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.002 Score=59.33 Aligned_cols=214 Identities=16% Similarity=0.128 Sum_probs=121.6
Q ss_pred CEEEEEeCCCCceeeEecc-CCCceEEEE---ECCC----CCEEEEeeC----------cCeEEEeecCCC----ceee-
Q 007229 39 RSVLIRYLDKPLHVEFYGE-HGYPVTVAR---YSPN----GEWIASADV----------SGSVRIWGTHNG----FVLK- 95 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~-h~~~v~~~~---~s~d----~~~las~~~----------d~~i~iwd~~~~----~~~~- 95 (612)
+.|++.|..+.+.+..+.- ..+.+++++ |..+ ..+|+.|.. .|.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4678888887776655432 233444444 4433 568887752 289999999984 1122
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc-eeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT-TVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
..-....++|++++-- +++ |+++... .+.++.++..+ ....-. .....+.++....+ +++.|.....+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~g~----~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~---~I~vgD~~~sv~ 152 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAVGN----KLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN---YILVGDAMKSVS 152 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEETT----EEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT---EEEEEESSSSEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEeecC----EEEEEEccCcccchhhheecceEEEEEEecccc---EEEEEEcccCEE
Confidence 1223457889888766 444 5555544 47888888666 332221 12235666665544 588888877788
Q ss_pred EEeCC--CCeeeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCC-------CC-eeeeeeccCCccccEEEE-
Q 007229 174 FYEGP--PFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-------GE-KIGEFSSEDGHHGSIYAV- 241 (612)
Q Consensus 174 ~wd~~--~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------~~-~~~~~~~~~~~~~~v~~i- 241 (612)
++... ..+....-+ .....++++.|-++++.++.+..+|.+.++.... +. .+...... .....|+++
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~ 231 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFR 231 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEE
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEE
Confidence 77433 322222212 2345688899987777899999999999998752 22 22222111 344567776
Q ss_pred --EEec--CCC------EEEEEeCCCcEEEE
Q 007229 242 --SWSP--DGK------KVLTVSADKSAKVW 262 (612)
Q Consensus 242 --~~~~--~~~------~l~~~~~dg~i~iw 262 (612)
++.| .+. .++.++.+|.|-..
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4444 122 37778889988744
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3e-05 Score=72.13 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=80.3
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceE-EEEEcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAIT-VIQYSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
.+..+.-+.|+|.-.++|.+..+|.|.++.+.-.+ ..+++-|+..++ +++|.|||+.||.|-.||+|++.|++++.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR---LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccce---eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 34467889999999999999999999999988433 466776777777 99999999999999999999999999998
Q ss_pred eeeecccccccceeEEEecC
Q 007229 528 VKLNNMLFHTARINCLAWSP 547 (612)
Q Consensus 528 ~~~~~~~~~~~~i~~~~~s~ 547 (612)
.+......-...|.++.|+|
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 87554444567788888864
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0071 Score=51.37 Aligned_cols=275 Identities=9% Similarity=0.014 Sum_probs=162.8
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc-cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV-KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
.+....+..++.+.+..+.-++++|+..+..+...-.-.. +--.++.. . +++...+..|.-+.+.|+.+.....+.
T Consensus 88 l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-s--Gn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 88 LFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-S--GNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-c--CCEEEEeeccCcEEEEECCCCCCceee
Confidence 3444556688899999999999999999887765443333 22223322 3 889999988888889999887776655
Q ss_pred ee---cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccc
Q 007229 367 KK---YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKV 443 (612)
Q Consensus 367 ~~---~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (612)
.. ....-..++..+++-+.+..++-+.+.|+...... ..
T Consensus 165 grya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sP--------------------------------------vl 206 (370)
T COG5276 165 GRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSP--------------------------------------VL 206 (370)
T ss_pred eeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCC--------------------------------------eE
Confidence 44 33444678889999999999999999998876533 11
Q ss_pred eeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 444 MSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 444 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
+........+.++..+++..+++...+ -+.+-|..+.+-....-.....+++..-.|.-.+++...+..+.-+.+-|+
T Consensus 207 i~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idi 284 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDI 284 (370)
T ss_pred EEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEec
Confidence 112222235777888888777776554 367777765543112212222222222133335667777777777778887
Q ss_pred CCcceee--ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccC
Q 007229 524 VSKEVKL--NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGE 600 (612)
Q Consensus 524 ~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~ 600 (612)
++..... ..+......-..+.. .+.++..+..+ ...+-+...+ +..-...+....+.+.+.+ +.+.+.+...
T Consensus 285 snp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~--s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 285 SNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-TGAVVDASPP--SMMDKRPGRPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred cCCCCCchhccccCCCccccceEE--ecCeeEeccCC-ceEEEeCCCh--hhcccccCcceEeeecceEEEeeEEEEeec
Confidence 7654321 111101112223333 23455555444 3444454431 1111122222234445555 6668888899
Q ss_pred CCeEEEEEec
Q 007229 601 DACIRVWRLA 610 (612)
Q Consensus 601 d~~i~~w~~~ 610 (612)
++-+.+|+.-
T Consensus 360 ~~gl~i~~~~ 369 (370)
T COG5276 360 NGGLSIIEYL 369 (370)
T ss_pred CCCEEEEEec
Confidence 9999999853
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0097 Score=54.80 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=123.3
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-----CCEEEEEEc---------C-CEEEEEEcCCCC---CC
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-----NDHLITVSL---------G-GIISIFSASNLD---KA 319 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---------~-~~i~~~~~~~~~---~~ 319 (612)
.|++.|. .+.+.+..+.....+........-... ...+++|+. . |.+.+|++.... ..
T Consensus 3 ~i~l~d~----~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 3 SIRLVDP----TTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp EEEEEET----TTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred EEEEEeC----CCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence 4566666 566666666555433332222211111 345666654 2 889999988841 11
Q ss_pred ce--eecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce-eeeecee-cccceEEEEeeccEEEEecCCCeEEEE
Q 007229 320 PL--SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY-SSKLEKK-YDARIKCLAAVEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 320 ~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~~i~~~ 395 (612)
+. .-....++|.+++... +. ++.+. ++.|.+|++...+ ....... ....+.++...+++++.+.....+.++
T Consensus 79 l~~i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEE
Confidence 22 2234567888888774 44 44333 4899999998888 3333222 445778888888899999888877777
Q ss_pred ecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEE
Q 007229 396 PLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLH 475 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~ 475 (612)
....... .+.. +..-..+..++++.|-++++.++++..+|.+.
T Consensus 155 ~~~~~~~----------------------~l~~---------------va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 155 RYDEENN----------------------KLIL---------------VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp EEETTTE-----------------------EEE---------------EEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred EEEccCC----------------------EEEE---------------EEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 5543211 0111 11111234588888887767999999999999
Q ss_pred EEEccCc---------ccccceeeccccCceEEE---EEcCC--C------cEEEEEcCCCeEEEE
Q 007229 476 IYSISGN---------TLTEEMVLEKHRGAITVI---QYSPD--V------SMFASADGNREAIVW 521 (612)
Q Consensus 476 i~d~~~~---------~~~~~~~~~~~~~~i~~~---~~s~~--~------~~l~~~~~d~~i~iw 521 (612)
++..... ++.....+ .....|+++ .+.|. + ..++.++.+|.|...
T Consensus 198 ~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 198 VLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9988632 11111111 223567777 55552 2 247888889988844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.001 Score=66.47 Aligned_cols=145 Identities=18% Similarity=0.146 Sum_probs=98.2
Q ss_pred CcEEEEE-ecCCcEEEEEcCCceeeeeceecc-cceEEEEee-------ccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 340 QQTILSS-SYDGAIIKWIRGVGYSSKLEKKYD-ARIKCLAAV-------EEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 340 ~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~-~~i~~~~~~-------~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
.++++.. .....|+-.|+..++.+.....+. .+|..++.+ +...+.|-.+..+..||.+-....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k------- 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK------- 565 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-------
Confidence 4555543 355788889999998887666544 336776662 445677777778888887643210
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL 490 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 490 (612)
+ ++. ....+..+...+|++-+.+| +||+|+.+|.|++||--+. .....+
T Consensus 566 ---------------~----------v~~---~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~--~AKT~l 614 (794)
T PF08553_consen 566 ---------------L----------VDS---QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK--RAKTAL 614 (794)
T ss_pred ---------------e----------eec---cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccch--hhhhcC
Confidence 0 000 01112234457788888777 6999999999999995432 235667
Q ss_pred ccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 491 EKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
++-..+|..|..+.||++++..+. ..+.+++.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 788899999999999999887765 46777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.9e-05 Score=70.79 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=80.7
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceE-EEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVN-CIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
...+..+.|+|.-+ ++|++..+|.+.+..+. .+.+.++.-|..+++ +++|.|||+.|++|-.||+|++.|.+++..+
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34677889999988 79999999999999888 777778876777777 9999999999999999999999999999988
Q ss_pred eeeeccCCccccEEEEEEec
Q 007229 226 GEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~ 245 (612)
... ......+|.++-|.+
T Consensus 98 ~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSF--LFSVETDISKGIWDR 115 (665)
T ss_pred ecc--ccccccchheeeccc
Confidence 874 125667788888863
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.016 Score=53.23 Aligned_cols=238 Identities=16% Similarity=0.101 Sum_probs=123.1
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCce---eeEe----ccCCCceEEEEECCC----CCEEEEeeCc--------
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLH---VEFY----GEHGYPVTVARYSPN----GEWIASADVS-------- 80 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~---~~~~----~~h~~~v~~~~~s~d----~~~las~~~d-------- 80 (612)
...+|+|.|||+.+++-..|.|.+++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46789999999988887799999999 44433 2222 234567899999994 4433333321
Q ss_pred CeEEEeecCCC-------ceeeeeeee---cCCCeEEEEECCCCCEEEEEeCCCCe--------eeEEEEEec-CCce--
Q 007229 81 GSVRIWGTHNG-------FVLKNEFKV---LSGRIDDLQWSPDGLRIVACGDGKGK--------SFVRAFMWD-SGTT-- 139 (612)
Q Consensus 81 ~~i~iwd~~~~-------~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~~--------~~i~i~~~~-~~~~-- 139 (612)
..|.-|..... +.+...+.. ....-..|+|.|||.+.++.++.... ..-.|...+ .++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24555555544 112222222 22355679999999888888766531 011222222 2221
Q ss_pred -----------eeeeccCCceEEEEEEcCC-CCEEEEE-eecCCeEEEEeCCCCe-------------------------
Q 007229 140 -----------VGDFDGHSRRVLSCEFKPT-RPFRIAT-CGEDFLVNFYEGPPFK------------------------- 181 (612)
Q Consensus 140 -----------~~~~~~~~~~v~~~~~~~~-~~~~l~~-~~~d~~i~~wd~~~~~------------------------- 181 (612)
...+..--.....++|+|. +. +.++ -+.+..=.|--+..+.
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0111111123467899999 65 2332 2333222222111110
Q ss_pred ----eeecccccccceEEEEECC-------CCCeEEEEEcCCcEEEEecCCCCeeeeeec-cCCccccEEEEEEecCCCE
Q 007229 182 ----FKLSHREHSNFVNCIRFSP-------DGSKLISVSSDRKGLIYDGKSGEKIGEFSS-EDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 182 ----~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~ 249 (612)
+...+. +...+..+.|-. .|.++++.-..+.|....++.+..+..... .......+..+++.|||.+
T Consensus 241 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 111122 234566677653 344555544456777777765543322211 2244558999999999998
Q ss_pred EEEEeCCCcEE
Q 007229 250 VLTVSADKSAK 260 (612)
Q Consensus 250 l~~~~~dg~i~ 260 (612)
.++...+|.|.
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 88887788763
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.017 Score=52.41 Aligned_cols=226 Identities=17% Similarity=0.106 Sum_probs=111.5
Q ss_pred EEEccCCCEEEEecC----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeee
Q 007229 24 ISGNPKTDTILYCNG----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 24 ~~~s~d~~~l~~~~~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
=+|.+||+.|+++++ ..+++.|+++++..+.-.+-........++|+.+.++-......|+--|+.+.+ ......
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEEEEE
Confidence 468899998888762 589999999998877433322333357788998888766566789999999987 444555
Q ss_pred ecCCCeEEEEE--CCCCCEEEEEeCCCCe-------------------eeEEEEEecCCceeeeeccCCceEEEEEEcCC
Q 007229 100 VLSGRIDDLQW--SPDGLRIVACGDGKGK-------------------SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 100 ~~~~~i~~~~~--s~~~~~l~~~~~~~~~-------------------~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (612)
.....+-...| ..|+..++..-..... ..+.-.+..+|+.. .+-.-...+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCccccCcccCCC
Confidence 55555555666 4466666544321100 01222222344332 23334556778899999
Q ss_pred CCEEEEEeec---CC-eEEEEeCCC-Ceeeeccccc--ccceEEEEECCCCCeEEEEEc-----CCcEEEEecCCCCeee
Q 007229 159 RPFRIATCGE---DF-LVNFYEGPP-FKFKLSHREH--SNFVNCIRFSPDGSKLISVSS-----DRKGLIYDGKSGEKIG 226 (612)
Q Consensus 159 ~~~~l~~~~~---d~-~i~~wd~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~ 226 (612)
.+.+++-|-+ +. .-|+|-+.+ +.....+..+ ...+..=-|.|||..+..-+. +..|.-+|+.+++...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 8876666533 22 135664322 2212222222 233444468999987765333 3457778888876644
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCC
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 256 (612)
.. ....-..+--++||++++-=+.|
T Consensus 279 ~~-----~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 279 LM-----EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-----EE-SEEEEEE-TTSSEEEEEE--
T ss_pred EE-----eCCceeeeEEcCCCCEEEecCCC
Confidence 33 11233455567888866654443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.9e-05 Score=44.43 Aligned_cols=38 Identities=32% Similarity=0.658 Sum_probs=34.2
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
+....+..|...|.++.|.++++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.3e-06 Score=77.49 Aligned_cols=204 Identities=13% Similarity=0.023 Sum_probs=125.3
Q ss_pred ceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCCCeee--ecccccccceEEEEECC-CCCeEEEEEc----CCcEEEEec
Q 007229 148 RRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPPFKFK--LSHREHSNFVNCIRFSP-DGSKLISVSS----DRKGLIYDG 219 (612)
Q Consensus 148 ~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~----dg~i~vwd~ 219 (612)
..+.|++..-+. +-+++.|..+|.|-+-..+...-. ....++..+.++++|++ |.+.||+|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 344555443322 237888999999988876543322 23567788899999998 5567776633 567999999
Q ss_pred CCC--CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 220 KSG--EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 220 ~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
.++ .+........+......+++|..+.+++++|.....++++|++....+...+.+ .. . ..+..-.|..+
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT---k~---v-qG~tVdp~~~n 209 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT---KY---V-QGITVDPFSPN 209 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh---hh---c-ccceecCCCCC
Confidence 877 222211111123345568899989999999998889999998321111111111 00 0 01111122344
Q ss_pred EEEEEEcCCEEEEEE-cCCCCCCceeecCccc----ceeEEEEEecCCcEEEEEecC-CcEEEEEcCC
Q 007229 298 HLITVSLGGIISIFS-ASNLDKAPLSFSGHVK----NVSTLTALKISQQTILSSSYD-GAIIKWIRGV 359 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~d-g~i~~wd~~~ 359 (612)
++ +...+|.+.+|| ....+.++........ .+..++|++.....+++...| ++|+++|+..
T Consensus 210 Y~-cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YF-CSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ce-eccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 44 445599999999 5555555554443333 488999995546666666554 7899998753
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0099 Score=59.74 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=93.8
Q ss_pred CCEEEEe-eCcCeEEEeecCCCceeeeeeeecCCC-eEEEEECC------CCCEEEEEeCCCCeeeEEEEEec---CCce
Q 007229 71 GEWIASA-DVSGSVRIWGTHNGFVLKNEFKVLSGR-IDDLQWSP------DGLRIVACGDGKGKSFVRAFMWD---SGTT 139 (612)
Q Consensus 71 ~~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~s~------~~~~l~~~~~~~~~~~i~i~~~~---~~~~ 139 (612)
.++|+.- .....|.-.|++.|+ +......+... |..++=.. +.+.++..+.+. ++.|| .+.+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~------lfriDpR~~~~k 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNS------LFRIDPRLSGNK 565 (794)
T ss_pred cceEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCc------eEEeccCCCCCc
Confidence 3444443 355789999999998 66677776654 54443211 223444444443 77777 2322
Q ss_pred eeeec----cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 140 VGDFD----GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 140 ~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
+..-. .......|++-+.+| .+|.|+.+|.||+||--..+....+.+-..+|..|..+.||+++++.+ +..+.
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred eeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEE
Confidence 22211 233567888888888 499999999999999544444445778889999999999999998766 56788
Q ss_pred EEecC
Q 007229 216 IYDGK 220 (612)
Q Consensus 216 vwd~~ 220 (612)
+++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.043 Score=56.02 Aligned_cols=239 Identities=5% Similarity=-0.078 Sum_probs=120.2
Q ss_pred ceeEEEEccCCCEEEEecC------CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc------CeEEEee
Q 007229 20 RGILISGNPKTDTILYCNG------RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS------GSVRIWG 87 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d------~~i~iwd 87 (612)
.+..+.+||||++|+++.+ ..|++.|+.+++.+........ ..++|++|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4777899999999999963 2899999998874332222222 469999999877665432 3688888
Q ss_pred cCCCce-eeeeeeecCCCeE-EEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEE
Q 007229 88 THNGFV-LKNEFKVLSGRID-DLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 163 (612)
+.++.. ....+........ ....+.|+++++..+.......+.++..+ .++....+....+....+. +..+.+.+
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 888732 2223333333333 33445588887766555443234444422 3332222222222222222 33343333
Q ss_pred EEeec--CCeEEEEeCC-CCeeeecccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCeeeeeeccCCccccE
Q 007229 164 ATCGE--DFLVNFYEGP-PFKFKLSHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 164 ~~~~~--d~~i~~wd~~-~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v 238 (612)
.+-.. ...|...++. +++....+.... ..+..+.++ .+.++++...++.-+++-+.. +..+..+.. .....+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~~~ 361 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAF--DDPAYV 361 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecC--CCCceE
Confidence 33222 2233333444 222222232223 367778877 334555556666655544332 233333310 112223
Q ss_pred EEEEEe--cCCC-EEEEEeC---CCcEEEEEe
Q 007229 239 YAVSWS--PDGK-KVLTVSA---DKSAKVWEI 264 (612)
Q Consensus 239 ~~i~~~--~~~~-~l~~~~~---dg~i~iw~~ 264 (612)
..+.++ +++. ++++.+. -+.+..+|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 393 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDM 393 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEEC
Confidence 333344 3333 3433332 256777776
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.019 Score=52.54 Aligned_cols=120 Identities=16% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCCEEEEEeecCCeEEEEeCCC----Ceeeecccc---cc----cceEEEEECCCCCeEEEEEc------CCcEEEEecC
Q 007229 158 TRPFRIATCGEDFLVNFYEGPP----FKFKLSHRE---HS----NFVNCIRFSPDGSKLISVSS------DRKGLIYDGK 220 (612)
Q Consensus 158 ~~~~~l~~~~~d~~i~~wd~~~----~~~~~~~~~---~~----~~v~~~~~s~~~~~l~~~~~------dg~i~vwd~~ 220 (612)
+.+++++-|-..+.|.+.|+.+ .+..+.+.. +. .....+-.-|+|+.++++-. -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 4566677777889999999773 333333332 11 22334455689988887532 2568888988
Q ss_pred CCCeeeeeeccCCccccEEEEEEecCCCEEEEEe--------------------CCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 221 SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS--------------------ADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------------------~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
+.+.............--..+-|.|..+.+++.. ...++.+||+ ...+.++++...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~----~~r~~~Q~idLg 241 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW----STRKLLQTIDLG 241 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET----TTTEEEEEEES-
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC----CCCcEeeEEecC
Confidence 7777777643333344556777888888888753 1246888888 788888777665
Q ss_pred C
Q 007229 281 T 281 (612)
Q Consensus 281 ~ 281 (612)
.
T Consensus 242 ~ 242 (461)
T PF05694_consen 242 E 242 (461)
T ss_dssp T
T ss_pred C
Confidence 3
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.011 Score=50.09 Aligned_cols=232 Identities=15% Similarity=0.148 Sum_probs=128.9
Q ss_pred EEEEEEcCCCCEEEEEeecCCeE-EEEeCCCCeeeecccccccc--eEEEEECCCCCeEEEEEcC-----CcEEEEecCC
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLV-NFYEGPPFKFKLSHREHSNF--VNCIRFSPDGSKLISVSSD-----RKGLIYDGKS 221 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i-~~wd~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~ 221 (612)
-..++|+|..+.-++.+-.-|+. .++|....+...++...++. .-.=.|||||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 34578888877667777666654 67888777665543321111 1122699999998875443 6788999874
Q ss_pred C-CeeeeeeccCCccccEEEEEEecCCCEEEEEeC------C------------CcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 222 G-EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA------D------------KSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 222 ~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------d------------g~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
+ +.+.++ ..|.-....+.+.+||+.++.+.. | -++.+.|. .+++++.+...+..
T Consensus 150 ~fqrvgE~---~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~----atG~liekh~Lp~~ 222 (366)
T COG3490 150 GFQRVGEF---STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA----ATGNLIEKHTLPAS 222 (366)
T ss_pred ccceeccc---ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEec----cccchhhhccCchh
Confidence 3 234444 367777788999999999887642 0 12233333 34444443333211
Q ss_pred cccceeeeeeecc-CCEEEEEE-----------------cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 283 NAVEDMLVGCLWQ-NDHLITVS-----------------LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
... ..+..+... ++.+.++. ..+.+..+++. ..........|-+++....++-..+
T Consensus 223 l~~-lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~p-----ee~~~~~anYigsiA~n~~~glV~l 296 (366)
T COG3490 223 LRQ-LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLP-----EEQTAAFANYIGSIAANRRDGLVAL 296 (366)
T ss_pred hhh-cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCC-----HHHHHHHHhhhhheeecccCCeEEE
Confidence 100 011111111 12222221 11111111111 1112223446677777744466666
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
+.-..+...+||..++....... -.....+....+-++..+.+|.+.++.
T Consensus 297 TSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 297 TSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ecCCCCeEEEEEcCCCcEEeccc--ccccccceeccCceEEecCCceEEecc
Confidence 77777788999999988765432 223344555666777788888888774
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.7e-06 Score=75.28 Aligned_cols=193 Identities=17% Similarity=0.202 Sum_probs=123.0
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCC-ceeecCcccceeEEEEEecCCcEEEEEec----CCcEEEEEcCCceeeeeceeccc
Q 007229 297 DHLITVSLGGIISIFSASNLDKA-PLSFSGHVKNVSTLTALKISQQTILSSSY----DGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
..+.+|..+|.|.+-..+.+... ....+++....++++|.+-+.+.|+.|-. |..+.+||+.+........
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~---- 146 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES---- 146 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc----
Confidence 45778888899999887776554 56677889999999999655777777643 3456667665542211000
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
|.+.+ ....
T Consensus 147 -----------------------~~fs~------------------------------------------------~~l~ 155 (783)
T KOG1008|consen 147 -----------------------PLFSS------------------------------------------------STLD 155 (783)
T ss_pred -----------------------ccccc------------------------------------------------cccc
Confidence 00000 0001
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEec-CCccee
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDR-VSKEVK 529 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~-~~~~~~ 529 (612)
...++++-.+.+++.+|.....+.++|++.... ....-.+..+..+...| .+.++++-. ||.|.+||. .+-+..
T Consensus 156 gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~---~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp 231 (783)
T KOG1008|consen 156 GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD---SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP 231 (783)
T ss_pred CccccccccCcchhhcccccchhhhhhhhhhhh---hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH
Confidence 234677778899999999999999999974322 11111233566677888 777887765 899999993 333322
Q ss_pred eeccccc----ccceeEEEecCCCc-EEEEeec-CcEEEEEEccC
Q 007229 530 LNNMLFH----TARINCLAWSPSST-MVATGSI-DTCVIIYEIGK 568 (612)
Q Consensus 530 ~~~~~~~----~~~i~~~~~s~~~~-~l~s~~~-d~~i~iwd~~~ 568 (612)
....... ...+..++|+|-.. .|++... .++|+++|+..
T Consensus 232 l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 232 LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 2222211 23489999999543 5666654 46899999864
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.014 Score=47.76 Aligned_cols=217 Identities=12% Similarity=0.066 Sum_probs=126.5
Q ss_pred EEEccCCCEEEEec--CCEEEEEeCCCCceeeE-eccCCCceEEEEECCCC---CEEEEeeCcCeEEEeecCCCce-eee
Q 007229 24 ISGNPKTDTILYCN--GRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNG---EWIASADVSGSVRIWGTHNGFV-LKN 96 (612)
Q Consensus 24 ~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~---~~las~~~d~~i~iwd~~~~~~-~~~ 96 (612)
..|.-+.+.|.+.. .+.|.-||.++.+..+. +++.. ...+.+--.| .+.+.++..-.|.-||-..... +..
T Consensus 20 p~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~ 97 (310)
T KOG4499|consen 20 PHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYR 97 (310)
T ss_pred CceEEecceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeee
Confidence 44555566666665 57777799887665443 33221 3333332222 2344444443455677443221 222
Q ss_pred eee-----ecCCCeEEEEECCCCCEEEEEeCCCCe----eeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 97 EFK-----VLSGRIDDLQWSPDGLRIVACGDGKGK----SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 97 ~~~-----~~~~~i~~~~~s~~~~~l~~~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
++. ......+.-..+|+|++.+-.-.+... .-..++.|..+..+..+...-.--..++|+.+.+.+.++-+
T Consensus 98 t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 98 TLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred eccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc
Confidence 211 123456677789999996544333221 01124444444333333333344467889888876677888
Q ss_pred cCCeEEEEe--CCCCee-----eecccc----cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 168 EDFLVNFYE--GPPFKF-----KLSHRE----HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 168 ~d~~i~~wd--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
.+-+|.-|| .++|.. +..++. .......+++..+|++.+++-..++|...|+.+|+.+.++. -...
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik---lPt~ 254 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK---LPTP 254 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE---cCCC
Confidence 888898887 555543 222222 11223445666678887877888999999999999999995 4477
Q ss_pred cEEEEEEec
Q 007229 237 SIYAVSWSP 245 (612)
Q Consensus 237 ~v~~i~~~~ 245 (612)
.+++++|--
T Consensus 255 qitsccFgG 263 (310)
T KOG4499|consen 255 QITSCCFGG 263 (310)
T ss_pred ceEEEEecC
Confidence 899999964
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.013 Score=49.99 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=116.6
Q ss_pred ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
+.+-...+.++.|+|+.+.|++......-.|+=..+|+.+.++... .-.....+.+..++++.++--.++.+.++.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc--ccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4455566999999999999999998888888888889999988543 23456688899889888887778899999884
Q ss_pred cCCCCCeeEe-eeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCce--eecCc-------ccceeEE
Q 007229 266 EDGSGGRVIK-TFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPL--SFSGH-------VKNVSTL 333 (612)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~-------~~~v~~~ 333 (612)
.+........ .+............-+++|+ +..++++-+.+-+.+|.......... ....+ -..+.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 3211111111 33333333334455667776 77889999988888888664432211 11111 2345666
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
.|....+.+++-+.+++.+...|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 676555777777777777777776654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.016 Score=51.82 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=90.2
Q ss_pred ceEEEEEEccCCCeEEEEec-----------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC-CCeE
Q 007229 451 FTVTACAIAPDGSEAIVGGQ-----------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG-NREA 518 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i 518 (612)
...+...+.|+|.+.+.... -|.|+.++. .+.. ...+..+-..-+.|+||||++.|..+.. .+.|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~--~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i 187 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV--VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI 187 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE--EEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence 34567888999887776444 134555554 3333 3444444556678999999987777765 4778
Q ss_pred EEEecCC--cce----eeecccccccceeEEEecCCCcEEEEeecCc-EEEEEEccCCCcceeeeecccccCeeeEEEe-
Q 007229 519 IVWDRVS--KEV----KLNNMLFHTARINCLAWSPSSTMVATGSIDT-CVIIYEIGKPASSRITIKNAHLGGVYGVAFM- 590 (612)
Q Consensus 519 ~iwd~~~--~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~- 590 (612)
.-|++.. +.. .........+..-.++...+|.+-+++-.+| .|..|+.+. +++....-....+++++|-
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG---~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG---KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC---cEEEEEECCCCCCccceEeC
Confidence 8887753 111 1111222345556677777888775555554 899999883 6666666666789999998
Q ss_pred c-Cce-EEEccC
Q 007229 591 D-DFN-VVSSGE 600 (612)
Q Consensus 591 ~-~~~-l~s~~~ 600 (612)
+ .+. ++++..
T Consensus 265 ~~~~~L~iTs~~ 276 (307)
T COG3386 265 PDLNTLYITSAR 276 (307)
T ss_pred CCcCEEEEEecC
Confidence 3 344 444433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.018 Score=50.41 Aligned_cols=147 Identities=20% Similarity=0.156 Sum_probs=92.7
Q ss_pred CcceeeecCCCCcEEEEE---eeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEE-ccCcccccce
Q 007229 413 QPLDLSLALSSPELALVS---TESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYS-ISGNTLTEEM 488 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d-~~~~~~~~~~ 488 (612)
.....++++++..++++. ....+.................++...|++++...++...+...+++. ..++......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 577889999998888777 233355555444444443445788899999988888777677666664 3333322111
Q ss_pred e-eccccCceEEEEEcCCCcEEEEEc---CCCeEEEEecC---Cc--cee---eecccccccceeEEEecCCCcEEEEee
Q 007229 489 V-LEKHRGAITVIQYSPDVSMFASAD---GNREAIVWDRV---SK--EVK---LNNMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 489 ~-~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~iwd~~---~~--~~~---~~~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
. ...-.+.|+.+.+||||..+|... .++.|.+=-+. .+ ..+ ..........++.+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 1 111112899999999999888765 34777776543 22 111 111222346789999999999877665
Q ss_pred cCc
Q 007229 557 IDT 559 (612)
Q Consensus 557 ~d~ 559 (612)
..+
T Consensus 185 ~~~ 187 (253)
T PF10647_consen 185 SAG 187 (253)
T ss_pred CCC
Confidence 433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0049 Score=44.28 Aligned_cols=99 Identities=14% Similarity=0.147 Sum_probs=68.4
Q ss_pred eEEEEEcC-CC---cEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc
Q 007229 497 ITVIQYSP-DV---SMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS 572 (612)
Q Consensus 497 i~~~~~s~-~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 572 (612)
|++|++.. ++ +.|++|++|..||+|+-.. .+.+ +. ..+.|++++-... ..++.+..+|+|-+|+-.. +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E-i~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE-IT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE-Ee-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc---e
Confidence 66777765 22 6899999999999998543 3322 22 3567888887766 5688899999999998754 3
Q ss_pred eeeeecccccCeeeEEEe--cC---ceEEEccCCCeEE
Q 007229 573 RITIKNAHLGGVYGVAFM--DD---FNVVSSGEDACIR 605 (612)
Q Consensus 573 ~~~~~~~h~~~v~~~~~~--~~---~~l~s~~~d~~i~ 605 (612)
.......|. ++++.+. ++ ..|++|-.+|.|-
T Consensus 74 lWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344333333 6677666 22 1499998898874
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00025 Score=70.67 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=79.9
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
.++-.-.+..++.|+..|.+-..|+...-.....-..-.++|++++|+.||++++.|-.+|.|.+||+.. + +.++.+.
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~-k~l~~i~ 169 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A-KILKVIT 169 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-C-cceeeee
Confidence 3333335668889998899998888764322122233467999999999999999999999999999998 6 6777777
Q ss_pred ccccCeeeEEEe----cCceEEEccCCCeEEEEEe
Q 007229 579 AHLGGVYGVAFM----DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 579 ~h~~~v~~~~~~----~~~~l~s~~~d~~i~~w~~ 609 (612)
.|..+.+++-+. ++..++++...|. +|++
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 777777766655 4556888887776 6765
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0074 Score=59.83 Aligned_cols=149 Identities=16% Similarity=0.185 Sum_probs=85.1
Q ss_pred cCCCeEEEEecCC-----eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC------------------
Q 007229 460 PDGSEAIVGGQNG-----KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR------------------ 516 (612)
Q Consensus 460 ~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~------------------ 516 (612)
-+++..+.|+.++ .+..||..+++......+.........++ -+++..+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3577777887654 48899998877643333332222222222 3677888887652
Q ss_pred -----eEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecC------cEEEEEEccC-CCcceeeeecccccCe
Q 007229 517 -----EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSID------TCVIIYEIGK-PASSRITIKNAHLGGV 584 (612)
Q Consensus 517 -----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d------~~i~iwd~~~-~~~~~~~~~~~h~~~v 584 (612)
.+..||..+.+-.... .-.......-...-++++.+.|+.+ ..+..||.++ ..+..+..+.......
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~-~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLP-NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred ccccceEEEECCCCCeEeecC-CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 4777887776432111 1011111111222367777777754 2467899887 4545555554433333
Q ss_pred eeEEEecCceEEEccCCC--eEEEEEeccC
Q 007229 585 YGVAFMDDFNVVSSGEDA--CIRVWRLATE 612 (612)
Q Consensus 585 ~~~~~~~~~~l~s~~~d~--~i~~w~~~~~ 612 (612)
.++..+++..+.||.|+ .+..||..++
T Consensus 507 -~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 507 -HTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred -eeEEECCEEEEEeeecceeehhhcCcccc
Confidence 23333788889999888 7777777653
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.053 Score=49.93 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=89.1
Q ss_pred cceEEEEEEccCCCeEEEEecCCeEEEE-EccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 450 GFTVTACAIAPDGSEAIVGGQNGKLHIY-SISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~~~~~dg~v~i~-d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
...+..+.+.|++.+++++. .|.+..- +-...... .....-...++++.+.|+++.++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~--~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWT--PHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEE--EeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999987776654 4544432 22212231 1222334678999999999887765 457665333344432
Q ss_pred eeecccc---cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec---ccccCeeeEEEecCceEEEccCCC
Q 007229 529 KLNNMLF---HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN---AHLGGVYGVAFMDDFNVVSSGEDA 602 (612)
Q Consensus 529 ~~~~~~~---~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~s~~~d~ 602 (612)
-.....+ ....+.++.+.|++..+++ +.+|.+. ...+. + +...... .-......+.|.+++..+.++..|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~-G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDG-G-KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCC-C-CCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 1111110 1245788999998876554 4677554 34443 3 3333332 223457788888556667778889
Q ss_pred eEEEEEec
Q 007229 603 CIRVWRLA 610 (612)
Q Consensus 603 ~i~~w~~~ 610 (612)
.|..|+-.
T Consensus 324 ~il~~~~~ 331 (334)
T PRK13684 324 VLLRYVGS 331 (334)
T ss_pred eEEEecCC
Confidence 99887643
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.053 Score=50.52 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=56.1
Q ss_pred eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccc-eeEEEecCC-----------------CcE
Q 007229 490 LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTAR-INCLAWSPS-----------------STM 551 (612)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~s~~-----------------~~~ 551 (612)
+......+.+++.+|++++.|+.+.=|.|.++|+.++..+ ..+++..+. +.-+..... ..+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-hhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3344456889999999999999988899999999998875 445543321 111111100 112
Q ss_pred -EEEeecCcEEEEEEccCCCcceeeeec
Q 007229 552 -VATGSIDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 552 -l~s~~~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
++-+-.-|.|.||.++. + .++..+.
T Consensus 382 LvIyaprRg~lEvW~~~~-g-~Rv~a~~ 407 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQ-G-PRVAAFN 407 (415)
T ss_pred EEEEeccCCeEEEEecCC-C-CEEEEEE
Confidence 34556788999999998 5 5554443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.094 Score=51.67 Aligned_cols=112 Identities=7% Similarity=0.052 Sum_probs=61.7
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee------eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCc
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM------LVGCLWQNDHLITVSLGGIISIFSASNLDKAP 320 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 320 (612)
+..+++++.++.|.-+|. .+++.+-.+........... .......++.+++++.++.+.-+|..+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa----~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDA----KTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEEC----CCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 345666777788888888 78888777665322111110 01123346788889999999999976655443
Q ss_pred eeecC-cc--cceeEEEEEecCCcEEEEEec------CCcEEEEEcCCceeee
Q 007229 321 LSFSG-HV--KNVSTLTALKISQQTILSSSY------DGAIIKWIRGVGYSSK 364 (612)
Q Consensus 321 ~~~~~-~~--~~v~~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~ 364 (612)
..-.. +. ..+.+--... +..++.+.. +|.|..+|.++++..-
T Consensus 145 ~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred ecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 32211 11 1111111111 334444432 5677777777776543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00019 Score=41.30 Aligned_cols=38 Identities=32% Similarity=0.476 Sum_probs=33.2
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
+....+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.043 Score=47.08 Aligned_cols=162 Identities=10% Similarity=0.066 Sum_probs=112.9
Q ss_pred CCCCceeEEEEccCCCEEEEecC-CEEEEEeCCCCceeeEecc-CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 16 TERGRGILISGNPKTDTILYCNG-RSVLIRYLDKPLHVEFYGE-HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~-~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
+....++++.|+|+.+.|++..+ ..-.|+=...|+.++++.- --..-..+++..+|++.++--.++.+.+..+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 45567999999999999988875 4555555566788776531 123445789999999999998999999988876532
Q ss_pred ee------eeee--ec-CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc---eeeeeccCC-------ceEEEEE
Q 007229 94 LK------NEFK--VL-SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT---TVGDFDGHS-------RRVLSCE 154 (612)
Q Consensus 94 ~~------~~~~--~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~-------~~v~~~~ 154 (612)
.. ..+. .+ +.+...++|.|..+.|..+-+.+ -+.|+.++.+. ..+....++ ..|..+.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~---P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN---PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC---CcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 11 1111 12 55788999999999998887777 46788887332 111122222 3467788
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCC
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPF 180 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~ 180 (612)
|.+..+.+++-+.+++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 99877778888888888887775543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00017 Score=58.51 Aligned_cols=142 Identities=11% Similarity=-0.012 Sum_probs=79.2
Q ss_pred EEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEE
Q 007229 74 IASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLS 152 (612)
Q Consensus 74 las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~ 152 (612)
|..-+.||.|+=+++...+.-.+.-..+... ...-.-+..++.++.++ .+.+|.|+. +.....+..-...|.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg---~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDG---AVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccc---eEEEecCCccchHHHhhhccccccee
Confidence 3334567777777766544211111112222 11122345677777776 577888872 2222222222233333
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc-cceEEEEECCCCCeEEEE--EcCCcEEEEecCC
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-NFVNCIRFSPDGSKLISV--SSDRKGLIYDGKS 221 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~ 221 (612)
+--.-+...+..++..||.|+.|+.+..+.+.....|+ .++..+..+..++.++.+ +.|..++.|+++.
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 32222222268999999999999999988887776776 455555555555555555 5566666666553
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.017 Score=41.62 Aligned_cols=101 Identities=8% Similarity=0.168 Sum_probs=67.7
Q ss_pred EEEEEE---cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 150 VLSCEF---KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 150 v~~~~~---~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
|+++++ ..+|..-|+.|+.|..||+|+-. +.+..+. ..+.|.++.-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 445544 44555679999999999999855 4444454 3456888877766 46888999999999984 33344
Q ss_pred eeeccCCccccEEEEEEec-CC---CEEEEEeCCCcEE
Q 007229 227 EFSSEDGHHGSIYAVSWSP-DG---KKVLTVSADKSAK 260 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~-~~---~~l~~~~~dg~i~ 260 (612)
.. .....+.++++.. ++ ..|++|-.+|.|-
T Consensus 76 Ri----KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RI----KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee----ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44 2334466666554 32 2588888888764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.029 Score=55.54 Aligned_cols=225 Identities=11% Similarity=0.125 Sum_probs=125.1
Q ss_pred CEEEEEEcC------CEEEEEEcCCCC-CCceeecCcccceeEEEEEecCCcEEEEEecC------CcEEEEEcCCceee
Q 007229 297 DHLITVSLG------GIISIFSASNLD-KAPLSFSGHVKNVSTLTALKISQQTILSSSYD------GAIIKWIRGVGYSS 363 (612)
Q Consensus 297 ~~~~~~~~~------~~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~ 363 (612)
..+++|+.. ..+..||..... .....+. ....-.+++..+ +.+.++|+.| ..+..||...++..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 344455544 456777766542 2222222 233344455555 7888899988 35778888888755
Q ss_pred eecee--cccceEEEEeeccEEEEecCCC-----eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEE
Q 007229 364 KLEKK--YDARIKCLAAVEEVIFTAGFDN-----KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436 (612)
Q Consensus 364 ~~~~~--~~~~i~~~~~~~~~l~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (612)
....- ...........+...++|+.|| .+..||..+.......
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va------------------------------ 412 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA------------------------------ 412 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC------------------------------
Confidence 53322 2222233334788888888887 4666666655432100
Q ss_pred EeecccceeeecccceEEEEEEccCCCeEEEEecCC------eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEE
Q 007229 437 LLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG------KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA 510 (612)
Q Consensus 437 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (612)
.... ..-..-...-+|++.++|+.++ ++..||..++.......+.......... .-++.+.+
T Consensus 413 ---------~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a--~~~~~iYv 480 (571)
T KOG4441|consen 413 ---------PMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA--VLNGKIYV 480 (571)
T ss_pred ---------CCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE--EECCEEEE
Confidence 0000 0111122233677788887554 6889999988875444444322222222 23778888
Q ss_pred EEcCCC-----eEEEEecCCcceeeec-ccccccceeEEEecCCCcEEEEeecCc-----EEEEEEccC
Q 007229 511 SADGNR-----EAIVWDRVSKEVKLNN-MLFHTARINCLAWSPSSTMVATGSIDT-----CVIIYEIGK 568 (612)
Q Consensus 511 ~~~~d~-----~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~ 568 (612)
.|+.|+ +|..||..+.+-.... .......+..... +++..++|+.|| +|..||..+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 888776 3777888877654222 2212222222222 567778888776 466676665
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.094 Score=48.21 Aligned_cols=226 Identities=13% Similarity=0.102 Sum_probs=107.4
Q ss_pred cCCCEEEEec--CCEEEEEeCC----CCceeeEecc---CC----CceEEEEECCCCCEEEEe--eC----cCeEEEeec
Q 007229 28 PKTDTILYCN--GRSVLIRYLD----KPLHVEFYGE---HG----YPVTVARYSPNGEWIASA--DV----SGSVRIWGT 88 (612)
Q Consensus 28 ~d~~~l~~~~--~~~i~i~~~~----~~~~~~~~~~---h~----~~v~~~~~s~d~~~las~--~~----d~~i~iwd~ 88 (612)
.+.++|+..+ .+.|+|.|+. .++..++++. +. ..-..+---|+|+.++|+ +. -|-+.+.|-
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 3677888887 7899999987 4455555543 11 122233445799888885 22 245778887
Q ss_pred CCCceeeeeeeec---CCCeEEEEECCCCCEEEEEeCCC-----------------CeeeEEEEEecCCceeeeeccCC-
Q 007229 89 HNGFVLKNEFKVL---SGRIDDLQWSPDGLRIVACGDGK-----------------GKSFVRAFMWDSGTTVGDFDGHS- 147 (612)
Q Consensus 89 ~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~-----------------~~~~i~i~~~~~~~~~~~~~~~~- 147 (612)
++.+ +....... ...-..+-|.|..+.+++..-.. -...+.+|+|.+.+.++++.--.
T Consensus 165 ~tf~-v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFE-VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 7765 33333322 22345677788777888765321 12368899999999999886443
Q ss_pred -ceEEEEEE--cCCCCEEEEEeecCCeEEEEeC-CCCeeee----ccc-----------------ccccceEEEEECCCC
Q 007229 148 -RRVLSCEF--KPTRPFRIATCGEDFLVNFYEG-PPFKFKL----SHR-----------------EHSNFVNCIRFSPDG 202 (612)
Q Consensus 148 -~~v~~~~~--~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~----~~~-----------------~~~~~v~~~~~s~~~ 202 (612)
.....+.| .|+..+-++.+-...+|..|-- ..++... .+. .-..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 34556666 4556655666655666655532 3322111 111 113457899999999
Q ss_pred CeEEEEEc-CCcEEEEecCCCCeeeee---ecc-------------CCccccEEEEEEecCCCEEEEEe
Q 007229 203 SKLISVSS-DRKGLIYDGKSGEKIGEF---SSE-------------DGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 203 ~~l~~~~~-dg~i~vwd~~~~~~~~~~---~~~-------------~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
++|...+. +|.++.||+.+....... ..- ..-.+....+..|-||+.|....
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99987765 899999999875433222 100 01123446778888888887654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00073 Score=54.94 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=72.4
Q ss_pred CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEE-EEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccc-c
Q 007229 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVI-QYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHT-A 538 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~ 538 (612)
-+..+++|+.+|.|++|........ ......-...|.++ .--.++.+..+++.||.||.|++...+.+ .....|. .
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~-~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~-g~~g~h~~~ 146 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAH-SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL-GYVGQHNFE 146 (238)
T ss_pred cCceEEeecccceEEEecCCccchH-HHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee-eeeccccCC
Confidence 3567999999999999987622111 11111112233332 22235568889999999999999998886 4455566 6
Q ss_pred ceeEEEecCCCcEEEEe--ecCcEEEEEEccC
Q 007229 539 RINCLAWSPSSTMVATG--SIDTCVIIYEIGK 568 (612)
Q Consensus 539 ~i~~~~~s~~~~~l~s~--~~d~~i~iwd~~~ 568 (612)
++..+..+..+++|+.+ |.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 67777777777788887 8888888888865
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=58.59 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=68.7
Q ss_pred EEEEccCCCEEEEec-CCEEEEEeCCCCcee-eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee
Q 007229 23 LISGNPKTDTILYCN-GRSVLIRYLDKPLHV-EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~ 100 (612)
.++.--.+.++++++ .|.+...|..+.-.. ..=..-.++|++++|+.||++++.|-.+|.|.+||+..++ +.+.+..
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e 170 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITE 170 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeee
Confidence 333334556788887 578888777654221 1112236799999999999999999999999999999988 5556666
Q ss_pred cCCCeEE---EEECCCCCEEEEEeCCC
Q 007229 101 LSGRIDD---LQWSPDGLRIVACGDGK 124 (612)
Q Consensus 101 ~~~~i~~---~~~s~~~~~l~~~~~~~ 124 (612)
|..+.+. +.+..++..++++...+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCC
Confidence 6655444 44455555555554444
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.15 Score=47.59 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=55.9
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc-EEEEEEecC-----------------CC-EEE
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS-IYAVSWSPD-----------------GK-KVL 251 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~i~~~~~-----------------~~-~l~ 251 (612)
..+.++..+|++++.++...-|.|.++|+.++..++..+ +..+. +.-+..... .. +++
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK---GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK---GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc---cCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 457889999999988887777999999999988777663 22211 111111000 11 233
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
.+-..|.|.+|.+ ..+..+..+...
T Consensus 385 yaprRg~lEvW~~----~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 385 YAPRRGILEVWSM----RQGPRVAAFNVG 409 (415)
T ss_pred EeccCCeEEEEec----CCCCEEEEEEeC
Confidence 4556799999999 888888777654
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.073 Score=43.85 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=80.8
Q ss_pred ceEEEEEEccCCCeEEEEec---------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEE-EEcCCCeEEE
Q 007229 451 FTVTACAIAPDGSEAIVGGQ---------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA-SADGNREAIV 520 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~i 520 (612)
...+.-..+|+|++.+-... .|.++.|-... +. ......-+--+.++|+.+.+.+. +-+.+-+|.-
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v---~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QV---ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-Cc---eeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 34556678899998442222 23444444331 11 11222223346788988776554 4456677877
Q ss_pred Ee--cCCccee-----eeccc--c-cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 521 WD--RVSKEVK-----LNNML--F-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 521 wd--~~~~~~~-----~~~~~--~-~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
|| ..++... ...-. . ..-..-.++...+|++.+++-..++|...|..+ + +.+..++-....|++++|-
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-G-K~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-G-KILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC-C-cEEEEEEcCCCceEEEEec
Confidence 77 5555431 11100 0 111123345566788888888889999999999 7 7777777788999999998
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.051 Score=53.92 Aligned_cols=227 Identities=16% Similarity=0.157 Sum_probs=124.6
Q ss_pred CcEEEEEecCC------cEEEEEcCCceeeeecee-cccceEEEEe-eccEEEEecCC-C-----eEEEEecCCCCCCcc
Q 007229 340 QQTILSSSYDG------AIIKWIRGVGYSSKLEKK-YDARIKCLAA-VEEVIFTAGFD-N-----KVWRVPLCEGECGDA 405 (612)
Q Consensus 340 ~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~-~~~~i~~~~~-~~~~l~~~~~~-~-----~i~~~~~~~~~~~~~ 405 (612)
+.+++.|+.++ .+..+|..++.......- ....-.+++. .+...++|+.+ | .+..||........
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 55666777663 577888888755543332 2222334444 67778888888 3 56667666554321
Q ss_pred ceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC-----eEEEEEcc
Q 007229 406 EHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-----KLHIYSIS 480 (612)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~v~i~d~~ 480 (612)
...+........+ ..-+|.+.|+|+.|| ++..||..
T Consensus 364 -----------------------------------~a~M~~~R~~~~v----~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 364 -----------------------------------VAPMNTKRSDFGV----AVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred -----------------------------------cCCccCcccccee----EEECCEEEEEeccccccccccEEEecCC
Confidence 0011111011111 123677888899887 58889999
Q ss_pred CcccccceeeccccCceEEEEEcCCCcEEEEEcCCC------eEEEEecCCcceeeec-ccccccceeEEEecCCCcEEE
Q 007229 481 GNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR------EAIVWDRVSKEVKLNN-MLFHTARINCLAWSPSSTMVA 553 (612)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~ 553 (612)
+.+......+......... ..-+|+..++|+.++ ++..||..+.+-.... ...-..... ++. -++.+.+
T Consensus 405 ~~~W~~va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYv 480 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHGV--AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYV 480 (571)
T ss_pred CCcccccCCCCcceeeeEE--EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEE
Confidence 8887444333321122222 223788888888654 5678888776643111 110111111 222 2677888
Q ss_pred EeecCc-----EEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCe-----EEEEEecc
Q 007229 554 TGSIDT-----CVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDAC-----IRVWRLAT 611 (612)
Q Consensus 554 s~~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~-----i~~w~~~~ 611 (612)
.|+.|+ +|..||..+..+..+..+......+ .++-.++...+.|+.||. |..||.++
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~-g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV-GVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccc-cEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 888776 3788998884433333333333222 222236777888887764 55555443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.014 Score=54.09 Aligned_cols=125 Identities=9% Similarity=0.081 Sum_probs=84.5
Q ss_pred cccceeeecccceEEEEEEccCCCe-------EEEEecCCeEEEEEccCcccccceeeccc----cCceEEEEEcCCCcE
Q 007229 440 SLKVMSKIDLGFTVTACAIAPDGSE-------AIVGGQNGKLHIYSISGNTLTEEMVLEKH----RGAITVIQYSPDVSM 508 (612)
Q Consensus 440 ~~~~~~~~~~~~~i~~~~~s~~~~~-------l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~ 508 (612)
.++.+.+......|+-+.+.|+.+. -++|-.|..|.-||.+-.....+...+.| .....|.+-..+| +
T Consensus 365 ~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~ 443 (644)
T KOG2395|consen 365 RGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y 443 (644)
T ss_pred cceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence 4555556555555777777776542 34567788899999863322112222222 2345566655555 8
Q ss_pred EEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 509 FASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
+|+|+.+|.||+||- .+..-...+++-..+|..+..+.||++|+..+ +..+.+-++.
T Consensus 444 IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 999999999999998 55444466888899999999999999887554 5567776653
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.046 Score=54.37 Aligned_cols=94 Identities=7% Similarity=0.018 Sum_probs=54.6
Q ss_pred eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC------CeEEEEecCC-ccee-eecccccccceeEEE
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN------REAIVWDRVS-KEVK-LNNMLFHTARINCLA 544 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~iwd~~~-~~~~-~~~~~~~~~~i~~~~ 544 (612)
.+..||..+++......+.... ...-+..-+++..+.|+.+ ..+..||..+ .+-. ...+.........+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 5888998888764333332221 1111223367777777754 2467899887 3321 122222222233333
Q ss_pred ecCCCcEEEEeecCc--EEEEEEccCCC
Q 007229 545 WSPSSTMVATGSIDT--CVIIYEIGKPA 570 (612)
Q Consensus 545 ~s~~~~~l~s~~~d~--~i~iwd~~~~~ 570 (612)
+ +|++.++|+.|+ .+..||..+..
T Consensus 511 ~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 H--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred E--CCEEEEEeeecceeehhhcCccccc
Confidence 3 788889999888 78888888843
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0094 Score=55.08 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=95.6
Q ss_pred CCCEEE-EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC--------EEEEEeCCCCeeeEEEEEecC---C
Q 007229 70 NGEWIA-SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL--------RIVACGDGKGKSFVRAFMWDS---G 137 (612)
Q Consensus 70 d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~~~~~~~i~i~~~~~---~ 137 (612)
+.++|. ++.....++--|++.|+ +......+.. |.-+.+.|+.+ .|+-.++.+ |+.|+. +
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~------vfriDpRv~~ 415 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNS------VFRIDPRVQG 415 (644)
T ss_pred ccceEeeCCCCcCcceeeecccce-eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCc------eEEecccccC
Confidence 334444 45555678888999998 6666766665 88888888753 344444443 777772 3
Q ss_pred c-eeeeeccCC----ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC
Q 007229 138 T-TVGDFDGHS----RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR 212 (612)
Q Consensus 138 ~-~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 212 (612)
+ .+..-++|+ ....|.+-..+| .++.|+.+|.||+||--..+....+++...+|..+..+.||++++..+ +.
T Consensus 416 ~~kl~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~t 492 (644)
T KOG2395|consen 416 KNKLAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KT 492 (644)
T ss_pred cceeeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-cc
Confidence 3 333334443 345666666777 499999999999999744444445888899999999999999988655 56
Q ss_pred cEEEEec
Q 007229 213 KGLIYDG 219 (612)
Q Consensus 213 ~i~vwd~ 219 (612)
.+.+.++
T Consensus 493 yLlLi~t 499 (644)
T KOG2395|consen 493 YLLLIDT 499 (644)
T ss_pred EEEEEEE
Confidence 7777664
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0027 Score=37.71 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=29.3
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEcc
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSIS 480 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~ 480 (612)
....|.+++|+|...++|.++.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45679999999999999999999999999984
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.52 Score=48.38 Aligned_cols=114 Identities=9% Similarity=-0.009 Sum_probs=69.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEE--ecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-----CeEEEEe
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFM--WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-----FLVNFYE 176 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~wd 176 (612)
.+..+.+||||++|+.+.+..+.....++. ..+++.+........ ..++|.+|++.++++...+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 466788999999999887766554544444 445653322222222 4599999998655554432 4678888
Q ss_pred CCCC--eeeecccccccceE-EEEECCCCCeEEEEEc---CCcEEEEec
Q 007229 177 GPPF--KFKLSHREHSNFVN-CIRFSPDGSKLISVSS---DRKGLIYDG 219 (612)
Q Consensus 177 ~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---dg~i~vwd~ 219 (612)
+.++ +-...+.+...... ....+.++++++..+. ++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8877 33333333333233 3344558887765544 457888884
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=37.42 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=30.5
Q ss_pred ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 190 SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 190 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
...|.+++|+|...+||.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999998 55543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.2 Score=43.09 Aligned_cols=278 Identities=13% Similarity=0.030 Sum_probs=154.3
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
...-+..+.++ +++...+..+.-+++.|+..+ .+..++..+.. .....+...+++...++..+.-+.+.|+
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P-~sP~~~~~lnt------~gyaygv~vsGn~aYVadlddgfLivdv 155 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTP-DSPTLIGFLNT------DGYAYGVYVSGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCC-CCcceeccccC------CceEEEEEecCCEEEEeeccCcEEEEEC
Confidence 44556677776 556777777888999999332 22222222222 1345666677899999998888999998
Q ss_pred CCCCCCceeec--CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCC
Q 007229 314 SNLDKAPLSFS--GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFD 389 (612)
Q Consensus 314 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~ 389 (612)
..+..+...-+ .....-..++.+ +++...+..|+-+.+-|+.......+... ....+..+...+++.+..-.+
T Consensus 156 sdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 156 SDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred CCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence 88877655433 222333455555 78888888999999999998777666554 222566666666665555555
Q ss_pred CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec--ccceEEEEEEccCCCeEEE
Q 007229 390 NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID--LGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 390 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~ 467 (612)
.-+.+.|..+.... ...-..+ ....++.+.. .+++..+
T Consensus 233 egvlivd~s~~ssp--------------------------------------~~~gsyet~~p~~~s~v~V--s~~~~Yv 272 (370)
T COG5276 233 EGVLIVDVSGPSSP--------------------------------------TVFGSYETSNPVSISTVPV--SGEYAYV 272 (370)
T ss_pred cceEEEecCCCCCc--------------------------------------eEeeccccCCcccccceec--ccceeee
Confidence 55555555443311 0000011 1112222333 3455555
Q ss_pred EecCCeEEEEEccCccccc-ceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEec
Q 007229 468 GGQNGKLHIYSISGNTLTE-EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546 (612)
Q Consensus 468 ~~~dg~v~i~d~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 546 (612)
...+.-+.+-|+.+..-.. ...+......-..+..+ +.++..+..+ +..+-+....+..-+ ..+....+.+.+.+
T Consensus 273 adga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~-~~g~~ti~~s~~v~ 348 (370)
T COG5276 273 ADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDK-RPGRPTIGQSCDVS 348 (370)
T ss_pred eccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhccc-ccCcceEeeecceE
Confidence 5555556666665432110 11111111122333332 3355555444 445555554443311 22223334455555
Q ss_pred CCCcEEEEeecCcEEEEEEcc
Q 007229 547 PSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 547 ~~~~~l~s~~~d~~i~iwd~~ 567 (612)
-+.+.+.+...++.+.||+..
T Consensus 349 ~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 349 VDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred EEeeEEEEeecCCCEEEEEec
Confidence 566677888888889998863
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.43 Score=45.58 Aligned_cols=177 Identities=14% Similarity=0.207 Sum_probs=101.3
Q ss_pred cceEEEEECCCCCeEEEEE---cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC----CCEEEEEeCCCcEEEEE
Q 007229 191 NFVNCIRFSPDGSKLISVS---SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD----GKKVLTVSADKSAKVWE 263 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~~~dg~i~iw~ 263 (612)
.++..++|. ||+.++-.. .+|.+++=| ...+ +.-..|..++|.|- ...+++......|.+|.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi-------GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI-------GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe-------eccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 578899997 666554332 234433322 2233 33355889999984 33455556778999999
Q ss_pred eecCC-CCCeeEeeeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCC
Q 007229 264 ILEDG-SGGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ 340 (612)
Q Consensus 264 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (612)
+.... +..+.+............-...+|.|. ...+.+-+....-.+++.......+..--...+-|.+.+|...+.
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 84221 233444443333334444556678887 344555555555556666655555554445677889999995434
Q ss_pred cEEEEEecCCcEEEEEcCCceeeee----ceecccceEEEEe
Q 007229 341 QTILSSSYDGAIIKWIRGVGYSSKL----EKKYDARIKCLAA 378 (612)
Q Consensus 341 ~~l~~~~~dg~i~~wd~~~~~~~~~----~~~~~~~i~~~~~ 378 (612)
+++++.+..=.-++||-........ ...-.+.|.++..
T Consensus 169 RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A 210 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA 210 (671)
T ss_pred EEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence 4444555555678888654432221 1114556666666
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.15 Score=42.01 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=86.4
Q ss_pred EEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee---eEEEE-EecCC
Q 007229 63 TVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS---FVRAF-MWDSG 137 (612)
Q Consensus 63 ~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~---~i~i~-~~~~~ 137 (612)
.+++-++.+ .|..+...+.|.+|++...+. +...+..- +.|..+.++..|+||++.-.+.... ++++| +|...
T Consensus 21 ~~~c~~g~d-~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 21 TAVCCGGPD-ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceeeccCCc-eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 344444423 333334567899999994333 44455544 7899999999999999998877766 77776 57622
Q ss_pred ----ceee-eeccC---------------------CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee-ee-----c
Q 007229 138 ----TTVG-DFDGH---------------------SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF-KL-----S 185 (612)
Q Consensus 138 ----~~~~-~~~~~---------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~-----~ 185 (612)
.++. .+-|| ..++.+++-.|-... |+.|+. +.+.+|.+..... .. .
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~~-~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGCG-NKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEcC-CEEEEEEEEEEEEecccccEEe
Confidence 2222 22221 234556666665443 555543 4688887654333 11 0
Q ss_pred cc----cc-c-cceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 186 HR----EH-S-NFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 186 ~~----~~-~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
+. .| . -.+..+++. +.|+|..+ +-.+++..+
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred chhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 10 11 1 124555555 56777655 456777654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.78 Score=46.81 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.2
Q ss_pred CeEEEEECCCCCEEEEEeCCC
Q 007229 104 RIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~ 124 (612)
.|..+.++|+|++|+..|..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~ 106 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG 106 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc
Confidence 688999999999999999877
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.5 Score=44.44 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=82.3
Q ss_pred CceeEEEEccCCCEEEEec-------------CCEEEEEeCCC--Cce--eeEeccCCCceEEEEECCCCCEEEEeeCcC
Q 007229 19 GRGILISGNPKTDTILYCN-------------GRSVLIRYLDK--PLH--VEFYGEHGYPVTVARYSPNGEWIASADVSG 81 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-------------~~~i~i~~~~~--~~~--~~~~~~h~~~v~~~~~s~d~~~las~~~d~ 81 (612)
....+|+|.++|+++++-. ++.|.+++-.+ |+. ...+...-.....+++.++| ++++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence 4677999999999887742 23777776542 332 23344344466889999999 5554 3443
Q ss_pred eEEEeecCCC-----c--eeeeeeee----cCCCeEEEEECCCCCEEEEEeCCCCee--------------eEEEEEec-
Q 007229 82 SVRIWGTHNG-----F--VLKNEFKV----LSGRIDDLQWSPDGLRIVACGDGKGKS--------------FVRAFMWD- 135 (612)
Q Consensus 82 ~i~iwd~~~~-----~--~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~~~~--------------~i~i~~~~- 135 (612)
..++.|.... + .+...+.. +......++|.|||...++.+...... .-.++.++
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 1 12222222 134577899999998877766421100 01345544
Q ss_pred CCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 136 SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
.+..+..+.........++|+|+|+ ++++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence 2223333333334567899999998 455543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.94 Score=47.34 Aligned_cols=143 Identities=18% Similarity=0.283 Sum_probs=86.0
Q ss_pred CeEEEEec---------CCeEEEEEccC-----cccc-----cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 463 SEAIVGGQ---------NGKLHIYSISG-----NTLT-----EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 463 ~~l~~~~~---------dg~v~i~d~~~-----~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
.||++|.. -|.++|||+-. +++. .....+.-+++|..++= -+|. |+++.. ..|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~-l~~~~G-qKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGH-LLSSQG-QKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccE-EEEccC-cEEEEEEe
Confidence 57888752 47899999742 2221 11122345677877653 3554 444433 57999999
Q ss_pred CC-cceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccc--ccCeeeEEEe-cCce--EEE
Q 007229 524 VS-KEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH--LGGVYGVAFM-DDFN--VVS 597 (612)
Q Consensus 524 ~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~~-~~~~--l~s 597 (612)
+. ...+-..+ -.-++.-....-=+++|+.|.--+.|.+.-.+... ..+..+... .-.+.++.|. ++.. ++.
T Consensus 1124 ~r~~~ligVaF--iD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep-~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1124 DRDSELIGVAF--IDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEP-YRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred ccCCcceeeEE--eccceeEEehhhhhhheehhhhhhceEEEEEccCc-eEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 44 44332222 12233333333345678888877788888887733 444443322 2268899998 6654 788
Q ss_pred ccCCCeEEEEEecc
Q 007229 598 SGEDACIRVWRLAT 611 (612)
Q Consensus 598 ~~~d~~i~~w~~~~ 611 (612)
+..|+.|++|-..+
T Consensus 1201 sDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1201 SDADRNIHVYMYAP 1214 (1366)
T ss_pred EcCCCcEEEEEeCC
Confidence 89999999987654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.45 Score=42.59 Aligned_cols=278 Identities=11% Similarity=0.080 Sum_probs=116.5
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
+...++..|.|..+..-++++ ..+. ++...+.+.+-+... .............+.+.++...+.+..+.+ +.
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG-~~g~--il~T~DGG~tW~~~~---~~~~~~~~~~l~~I~f~~~~g~ivG~~g~l--l~ 85 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVG-AYGT--ILKTTDGGKTWQPVS---LDLDNPFDYHLNSISFDGNEGWIVGEPGLL--LH 85 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEE-TTTE--EEEESSTTSS-EE--------S-----EEEEEEEETTEEEEEEETTEE--EE
T ss_pred CCCCceEEEEEecCCEEEEEe-cCCE--EEEECCCCccccccc---cCCCccceeeEEEEEecCCceEEEcCCceE--EE
Confidence 456689999999555555555 4554 445433333333322 111111122344455555555556666643 33
Q ss_pred cCCCCCCceeec---CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEec
Q 007229 313 ASNLDKAPLSFS---GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAG 387 (612)
Q Consensus 313 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~ 387 (612)
..........+. .-......+.... .......+..|.|..=.-....-..........+..+.. ++.+++++.
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~--~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALG--DGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEE--TTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcC--CCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence 233333333321 1122333344433 334444444555443322222222222223344555444 344444443
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 467 (612)
.-..+.-|+.-...- ..........|.+|.|+|++.+.++
T Consensus 164 ~G~~~~s~~~G~~~w----------------------------------------~~~~r~~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 164 RGNFYSSWDPGQTTW----------------------------------------QPHNRNSSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp TSSEEEEE-TT-SS-----------------------------------------EEEE--SSS-EEEEEE-TTS-EEEE
T ss_pred cccEEEEecCCCccc----------------------------------------eEEccCccceehhceecCCCCEEEE
Confidence 333334444322110 0111113457999999999887665
Q ss_pred EecCCeEEEEEcc-Cc-cccc-ceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc--cccccceeE
Q 007229 468 GGQNGKLHIYSIS-GN-TLTE-EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM--LFHTARINC 542 (612)
Q Consensus 468 ~~~dg~v~i~d~~-~~-~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~ 542 (612)
+ ..|.|++=+.. .. .... ........-.+..++|.+++...|+|+. |.+ +.....++.-.+.. ..-....+.
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~ 280 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYR 280 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---E
T ss_pred e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEE
Confidence 4 88888888722 11 1110 1111122234789999999888887765 433 34455555432221 123456788
Q ss_pred EEecCCCcEEEEeecCcEEEEE
Q 007229 543 LAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 543 ~~~s~~~~~l~s~~~d~~i~iw 564 (612)
+.|.++.+-++.| .+|.+.-|
T Consensus 281 i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEEETTEEEEE--STTEEEEE
T ss_pred EEEcCCCceEEEC-CCcEEEEe
Confidence 8888665555554 67766544
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.11 Score=47.58 Aligned_cols=154 Identities=10% Similarity=0.081 Sum_probs=102.6
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCC---ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce---e
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKP---LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV---L 94 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~---~ 94 (612)
-+.+=|....+.|++...|.+.=|-++.+ -++..-...+++|.++.||+|.+.||.--.+.+|.+.+....+. .
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34566776677776666555555554432 22333334677999999999999999999999999999854443 2
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEee-cCCeE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-EDFLV 172 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i 172 (612)
....+.....|....|+.+ .-+|...+.+ +.++... ..+.++..+.|...|.-..|.++.+..+.+.+ ..+++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G----~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG----IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC----eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 2222334456889999876 6777777766 4566666 45566777888999999999999885444444 33444
Q ss_pred EEEeCCC
Q 007229 173 NFYEGPP 179 (612)
Q Consensus 173 ~~wd~~~ 179 (612)
.=+.+++
T Consensus 180 npf~~~~ 186 (657)
T KOG2377|consen 180 NPFHFRA 186 (657)
T ss_pred ccEEEee
Confidence 3343333
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.66 Score=43.63 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=83.3
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce----
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV---- 528 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---- 528 (612)
...+..++|+.+++++.....++-||-...... ..-......++++.+.+++..++++ .+|.+. +....++.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~--~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQ--PHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceE--EecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 344567788887777655433333443221111 1112234568999999999888766 456544 33333321
Q ss_pred eeeccc--ccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec---ccccCeeeEEEecCceEEEccCCCe
Q 007229 529 KLNNML--FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN---AHLGGVYGVAFMDDFNVVSSGEDAC 603 (612)
Q Consensus 529 ~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~s~~~d~~ 603 (612)
...... .....+.++.|.+++..+++| .+|.+.... .. + +...... .-......+.|.+++.....+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~-G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DG-G-KSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CC-C-cceeEccccCCCCcceeEEEEcCCCceEEEeCCcE
Confidence 011111 112358899999888766555 677555553 22 3 3333322 2345688999886666666778888
Q ss_pred EEEE
Q 007229 604 IRVW 607 (612)
Q Consensus 604 i~~w 607 (612)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.18 Score=49.35 Aligned_cols=217 Identities=12% Similarity=0.108 Sum_probs=111.3
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee--e
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN--E 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~--~ 97 (612)
.+-++..+|....=++..--.|.|+++.. +.+..+.-....+..+.|+.+..+|+.. .+|++.||++........ -
T Consensus 45 GpIAV~r~p~~~~~~~~a~~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~eeLI~v~-k~g~v~Vy~~~ge~ie~~svg 122 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLYSARPYIRIFNISG-QLLGRILWKHGELIGMGWSDDEELICVQ-KDGTVHVYGLLGEFIESNSVG 122 (829)
T ss_pred CceEEEecccccccccccceeEEEEeccc-cchHHHHhcCCCeeeecccCCceEEEEe-ccceEEEeecchhhhcccccc
Confidence 33444444433222222234688888764 4444444344488899999988766554 899999999976542110 1
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCc-eeeee---ccCCceEEEEEEcCCCCEEEEEeecCCe-
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGT-TVGDF---DGHSRRVLSCEFKPTRPFRIATCGEDFL- 171 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~-~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~- 171 (612)
.......|..+.|..+|-.+++.+.. +...+ .++ .++++ ++..-+-.|-...+++......-..+-.
T Consensus 123 ~e~~~~~I~ec~~f~~GVavlt~~g~-------v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v 195 (829)
T KOG2280|consen 123 FESQMSDIVECRFFHNGVAVLTVSGQ-------VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAV 195 (829)
T ss_pred cccccCceeEEEEecCceEEEecCCc-------EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhh
Confidence 12233356666666666444444332 33333 111 22222 2222222233222222100100011100
Q ss_pred -EEEEeCCCCe-eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 172 -VNFYEGPPFK-FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 172 -i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
..+....... ....+......+..+..||+.++|+--...|.|.+-+.+..+....+... ...+...++|..+.
T Consensus 196 ~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~--~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 196 GLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT--DHDPPKQMAWCGND 271 (829)
T ss_pred hhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC--CCCchHhceeecCC
Confidence 0111111111 11112222356888999999999999999999999998888877777422 22333366776444
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.054 Score=55.37 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc-----eeeee------ccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT-----TVGDF------DGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 103 ~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~-----~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
-.+..+...+|++..++....++. .+..+++.+-. ...-| ........++.|+|.=....+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~-~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGE-AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCc-eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 356677778888776666554422 45555544211 11111 2233456778899877666888899999
Q ss_pred EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC-CccccEEEEEEecCCCEE
Q 007229 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED-GHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l 250 (612)
|++..+........--.-....++++|+|.|+.++.|-..|++.-|... ++....+..+. .....|.+++|.....++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9998765443332222345678999999999999999999999999853 44444443221 224789999999877776
Q ss_pred EEE
Q 007229 251 LTV 253 (612)
Q Consensus 251 ~~~ 253 (612)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.28 Score=48.00 Aligned_cols=77 Identities=17% Similarity=0.336 Sum_probs=52.9
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
..++++.-+|.++.++.+..||.|++|+.......... ....|-..+.|...| |++...|..+.-|.- .
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~----~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~-----d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC----EEAKPKENLVFTNHG--LVTATSDRRALAWKE-----D 83 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh----hhcCCccceeeeccc--eEEEeccchhheeec-----c
Confidence 45777888899999999999999999998655442222 223344566776555 677777888888873 5
Q ss_pred CeeEeeee
Q 007229 271 GRVIKTFA 278 (612)
Q Consensus 271 ~~~~~~~~ 278 (612)
+-..+.|.
T Consensus 84 gvvqqqfd 91 (1636)
T KOG3616|consen 84 GVVQQQFD 91 (1636)
T ss_pred Ccchhhcc
Confidence 54444444
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.81 Score=43.07 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=94.2
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCCCeEEEEecCCCC----------------
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE---------------- 401 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~---------------- 401 (612)
..++..-+.||.+.+++-+.-........ ..+++ +.....+.+++++.+..+..|....-.
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl-~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~ 223 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPL-CYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI 223 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCe-EEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence 46777778888888887766554333332 22222 222356677777777777766542111
Q ss_pred -----CCccceeccCCCcceeeecCC--CCcEEEEEeeccEEEee-cccceeeecccceEEEEE-Ec----cCC---CeE
Q 007229 402 -----CGDAEHIDVGSQPLDLSLALS--SPELALVSTESGVILLD-SLKVMSKIDLGFTVTACA-IA----PDG---SEA 465 (612)
Q Consensus 402 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~-~s----~~~---~~l 465 (612)
....-.......+..+..... ....+++-+...+..++ .+.............|++ |. .++ ..+
T Consensus 224 ~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~l 303 (418)
T PF14727_consen 224 SSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNL 303 (418)
T ss_pred cccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEE
Confidence 111112233333333332221 22333444444444444 444433334444444443 11 122 248
Q ss_pred EEEecCCeEEEEEccCcccccceeeccccCce--EEEEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 466 IVGGQNGKLHIYSISGNTLTEEMVLEKHRGAI--TVIQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 466 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
++++.++.+.||.=.+-.. ...+ ...+| .-..|..-...|++-+.+|.+.+-=+-+...
T Consensus 304 lV~t~t~~LlVy~d~~L~W--sA~l--~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 304 LVGTHTGTLLVYEDTTLVW--SAQL--PHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEecCCeEEEEeCCeEEE--ecCC--CCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 8899999999997554333 2222 11222 2223333456888888999998876655443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.29 Score=49.11 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=75.6
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC------CeEEEEecCCccee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN------REAIVWDRVSKEVK 529 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~iwd~~~~~~~ 529 (612)
+++..+.|+.+ ..+..||..+++......+........ + ..-+++..+.|+.+ ..+..||..+.+-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~-~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPC-V-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccce-E-EEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56677777755 357888888776643333322111111 1 22367777777732 45888998775432
Q ss_pred eec-ccccccceeEEEecCCCcEEEEeecC--------cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccC
Q 007229 530 LNN-MLFHTARINCLAWSPSSTMVATGSID--------TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE 600 (612)
Q Consensus 530 ~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~ 600 (612)
... ...... ...+...++++.+.|+.+ ..+.+||..+..+..+..+....... +++..+++.++.||.
T Consensus 420 ~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 420 KGSPLPISHY--GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCIFNNKIYVVGGD 496 (534)
T ss_pred ecCCCCcccc--CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEEECCEEEEEcCC
Confidence 111 110011 111222366777777643 23888888874323332222111111 122226777777775
Q ss_pred C-----CeEEEEEecc
Q 007229 601 D-----ACIRVWRLAT 611 (612)
Q Consensus 601 d-----~~i~~w~~~~ 611 (612)
+ +.+.+||.++
T Consensus 497 ~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 497 KYEYYINEIEVYDDKT 512 (534)
T ss_pred cCCcccceeEEEeCCC
Confidence 4 4688888765
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.53 Score=40.61 Aligned_cols=115 Identities=9% Similarity=0.001 Sum_probs=75.3
Q ss_pred cccEEEEEEecCCCEEEEEeCCC--cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 235 HGSIYAVSWSPDGKKVLTVSADK--SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
..-...+.|..++.++-+.+.-| .|+.+|+ .+++.......+..-
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~----~tg~~~~~~~l~~~~----------------------------- 90 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDL----ETGKVLQSVPLPPRY----------------------------- 90 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEET----TTSSEEEEEE-TTT------------------------------
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEEC----CCCcEEEEEECCccc-----------------------------
Confidence 34456788878888888888766 7888898 888877766554310
Q ss_pred cCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 313 ASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
--..+...+ +....-.-.++...+||..+-+...... ....=..++.+++.|+.......+
T Consensus 91 ----------------FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L 151 (264)
T PF05096_consen 91 ----------------FGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRL 151 (264)
T ss_dssp -----------------EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEE
T ss_pred ----------------cceeEEEEC--CEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEEcCCCEEEEECCccce
Confidence 001122222 3444455567888999998877776655 567778888999999999989999
Q ss_pred EEEecCCCC
Q 007229 393 WRVPLCEGE 401 (612)
Q Consensus 393 ~~~~~~~~~ 401 (612)
+.+|..+..
T Consensus 152 ~~~dP~~f~ 160 (264)
T PF05096_consen 152 YFLDPETFK 160 (264)
T ss_dssp EEE-TTT-S
T ss_pred EEECCcccc
Confidence 999977654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.5 Score=47.38 Aligned_cols=104 Identities=10% Similarity=0.122 Sum_probs=56.6
Q ss_pred CCCeEEEEecC------CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC--------CeEEEEecCCc
Q 007229 461 DGSEAIVGGQN------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN--------REAIVWDRVSK 526 (612)
Q Consensus 461 ~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------~~i~iwd~~~~ 526 (612)
+++..+.|+.+ ..+..||..+++......++....... +...+++..+.|+.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC--AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce--EEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 55666666632 368899998877643332222111111 223366777777643 23888998876
Q ss_pred ceeeec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccC
Q 007229 527 EVKLNN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGK 568 (612)
Q Consensus 527 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~ 568 (612)
+-.... ..........+.+ ++++++.|+.+ ..+.+||..+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 532111 1111111122222 67777788754 4688899887
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.58 Score=40.40 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=102.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 182 (612)
-...+.|..+|..+-+.|..+ .+.++.++.++++......-. .-.-..++...+. +...-=.++...+||..+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG-~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~--l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG-QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDK--LYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT-EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTE--EEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCC-cEEEEEEECCCCcEEEEEECCccccceeEEEECCE--EEEEEecCCeEEEEccccceE
Confidence 456788888888888877766 447888888898876654322 2223344444442 455555678999999999998
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC--CccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED--GHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
+.++.- .+.=..++ .|++.|+.......++++|.++.+....+.... ..-..+..+.|. +|...|=.-....|.
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 887643 34445565 567777777777889999999888877775431 112244556665 565555444556677
Q ss_pred EEEeecCCCCCeeEeeeecc
Q 007229 261 VWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 261 iw~~~~~~~~~~~~~~~~~~ 280 (612)
..|. .+++....+...
T Consensus 199 ~Idp----~tG~V~~~iDls 214 (264)
T PF05096_consen 199 RIDP----ETGKVVGWIDLS 214 (264)
T ss_dssp EEET----TT-BEEEEEE-H
T ss_pred EEeC----CCCeEEEEEEhh
Confidence 7777 788877766543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.079 Score=54.26 Aligned_cols=144 Identities=12% Similarity=0.081 Sum_probs=93.8
Q ss_pred cceEEEEEEccCCCeEEEEecCC--eEEEEEccCccccc---ceeeccc------cCceEEEEEcCCCc-EEEEEcCCCe
Q 007229 450 GFTVTACAIAPDGSEAIVGGQNG--KLHIYSISGNTLTE---EMVLEKH------RGAITVIQYSPDVS-MFASADGNRE 517 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~~~~~dg--~v~i~d~~~~~~~~---~~~~~~~------~~~i~~~~~s~~~~-~l~~~~~d~~ 517 (612)
..++..+...+|+...++....+ .|+.||+..-.... ...+..| .....++.|.|.-. ..|....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34567778888877766554433 79999987543211 1222222 23456778888432 3456667889
Q ss_pred EEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc----cccCeeeEEEe-cC
Q 007229 518 AIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA----HLGGVYGVAFM-DD 592 (612)
Q Consensus 518 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----h~~~v~~~~~~-~~ 592 (612)
|++..+.-.......+. -....++++|+|.|+.++.|-..|++.-|...- +....+.+ ....|.+|+|. ..
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l---eik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL---EIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc---ceeecccCCCcCCCcceeEEEEecce
Confidence 99887765544433333 456789999999999999999999999887654 22222111 14679999999 66
Q ss_pred ceEEE
Q 007229 593 FNVVS 597 (612)
Q Consensus 593 ~~l~s 597 (612)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 66665
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.1 Score=41.50 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=85.4
Q ss_pred EEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeE
Q 007229 195 CIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVI 274 (612)
Q Consensus 195 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 274 (612)
.+-|. |.+..+.+...|.+.=|-......-..++......++|.++.|++|.+.+++--.+.+|.+++.. ..+..
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~----~d~~~ 101 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI----PDNSQ 101 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC----CCchh
Confidence 34444 33334444455666666654332211111122456799999999999999999999999999972 22222
Q ss_pred eeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe
Q 007229 275 KTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337 (612)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 337 (612)
... ..........+.+..|..+.-++--.+..+.+|........++....|...|.-..|..
T Consensus 102 l~~-~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~ 163 (657)
T KOG2377|consen 102 LEY-TQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCP 163 (657)
T ss_pred hHH-HHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEcc
Confidence 111 11222233457888888666555555666777777777777777777888887777774
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.3 Score=42.55 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=77.7
Q ss_pred CceeEEEEccC----C-CEEEEecCCEEEEEeCC-----CCceeeEec-cCCC----ceEEEEECCCCCEEEEeeCcCeE
Q 007229 19 GRGILISGNPK----T-DTILYCNGRSVLIRYLD-----KPLHVEFYG-EHGY----PVTVARYSPNGEWIASADVSGSV 83 (612)
Q Consensus 19 ~~v~~~~~s~d----~-~~l~~~~~~~i~i~~~~-----~~~~~~~~~-~h~~----~v~~~~~s~d~~~las~~~d~~i 83 (612)
+.|..++|.|- - .+||+-....|.||-+. +.+.+..-. ...+ --..+.|+|....|+.-.....=
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 47899999995 3 57788889999999875 222221111 0111 12467899999888876655444
Q ss_pred EEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc
Q 007229 84 RIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT 138 (612)
Q Consensus 84 ~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~ 138 (612)
.+.++..... ++..+ ...+.|.|.+|.+||++|+++-... +.-|.||+.+
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSs----LHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSS----LHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCe----EEEEEecCch
Confidence 5666664433 33333 5677899999999999998887664 7789999543
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.3 Score=41.70 Aligned_cols=274 Identities=14% Similarity=0.097 Sum_probs=138.7
Q ss_pred CCEEEEeeCcCeEEEeecCCCcee---eeeeeecCCCeEEEEECC-----CCCEEEEEeCCCCeeeEEEEEec--CCc--
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSP-----DGLRIVACGDGKGKSFVRAFMWD--SGT-- 138 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~~~~~~~i~i~~~~--~~~-- 138 (612)
...|++||..|.++|++....... ...-..-+.+|..+..-. +...||+..-.. +.++... .|.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~k----l~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRK----LSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCE----EEEEEEEecCCCcc
Confidence 358999999999999999765421 111123446787776542 334555544332 4555553 121
Q ss_pred -----eeeeeccCC--ceEEEEEEcC----CCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE
Q 007229 139 -----TVGDFDGHS--RRVLSCEFKP----TRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 139 -----~~~~~~~~~--~~v~~~~~~~----~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
.+..+..|. .....++.-| .++..+..-+.||.+.+++-+.......+.+ ---.-.+.|.+....+++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 222222232 1222222222 2244799999999999999887665555544 222334678888888898
Q ss_pred EEcCCcEEEEecCCCCee-----------------eeeec--cCCccccEEEEE---EecCCCEEEEEeCCCcEEEEEee
Q 007229 208 VSSDRKGLIYDGKSGEKI-----------------GEFSS--EDGHHGSIYAVS---WSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~-----------------~~~~~--~~~~~~~v~~i~---~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
++.+..+.-|....-... ..+.. .-.-..++..+. ++.....+++-++ .++.+.+.
T Consensus 192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~- 269 (418)
T PF14727_consen 192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKD- 269 (418)
T ss_pred ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcC-
Confidence 888888888865311000 00000 001123333333 3223334444433 34555553
Q ss_pred cCCCCCeeEeeeeccCccccceeeeee--eccC---CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE--ec
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGC--LWQN---DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL--KI 338 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 338 (612)
+|......+..- .+..-..+.. ...+ ..+++++.++.+.+|.-..- .--........++... ..
T Consensus 270 ----~G~l~~~krLd~-~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L----~WsA~l~~~PVal~v~~~~~ 340 (418)
T PF14727_consen 270 ----NGSLRFQKRLDY-NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL----VWSAQLPHVPVALSVANFNG 340 (418)
T ss_pred ----CCeEEEEEecCC-ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE----EEecCCCCCCEEEEecccCC
Confidence 454444433321 1111111222 1111 24999999999999872221 1000111111223222 22
Q ss_pred CCcEEEEEecCCcEEEEEcCCc
Q 007229 339 SQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
-...+++-+.+|.+.+-=+.+.
T Consensus 341 ~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CCceEEEEcCCCcEEEEEeCCC
Confidence 3567777777777776654443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.38 Score=45.28 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=76.7
Q ss_pred eEEEEEEccCCCeEEEEe-----------cCC-eEEEEEccC--cccccceeeccccCceEEEEEcCCCcEEEEEcCCCe
Q 007229 452 TVTACAIAPDGSEAIVGG-----------QNG-KLHIYSISG--NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNRE 517 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~-----------~dg-~v~i~d~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 517 (612)
....++|.++|+++++-. ..+ .|.+++-.+ ++......+...-.....+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 467889999998777642 223 677776532 3332223333333456889999998 444 444433
Q ss_pred EEEEecCC-------cceeeecccc----cccceeEEEecCCCcEEEEeecC-------------------cEEEEEEcc
Q 007229 518 AIVWDRVS-------KEVKLNNMLF----HTARINCLAWSPSSTMVATGSID-------------------TCVIIYEIG 567 (612)
Q Consensus 518 i~iwd~~~-------~~~~~~~~~~----~~~~i~~~~~s~~~~~l~s~~~d-------------------~~i~iwd~~ 567 (612)
.++.|... .+.+...+.. +......++|.|||.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 33445432 1222222322 13447789999999876654421 334444444
Q ss_pred CCCcceeeeecccccCeeeEEEe-cCceEEEc
Q 007229 568 KPASSRITIKNAHLGGVYGVAFM-DDFNVVSS 598 (612)
Q Consensus 568 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~ 598 (612)
. ..+..+..--.....++|+ +++.+++-
T Consensus 173 g---~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 173 G---GKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred C---CeEEEEecCcCCCccceECCCCCEEEEc
Confidence 3 2233332222335678898 66665553
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.73 Score=45.32 Aligned_cols=112 Identities=14% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
....++++.-+|.++. ++.+..||+|++|+..+.+..... ....+-..+.|...| |++++.|+.+.-|. ++|...
T Consensus 13 ~~e~~~aiqshp~~~s-~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq 87 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQS-FVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ 87 (1636)
T ss_pred ccceeeeeeecCCCce-EEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc--eEEEeccchhheee-ccCcch
Confidence 4566788888999994 999999999999997766543222 122344556676555 67777888888887 566555
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
+.+...........++...|..+.++ |.--|.+.-+|
T Consensus 88 qqfdyndqsekefss~~cdptaqnvv-gtlcggv~q~d 124 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQNVV-GTLCGGVEQFD 124 (1636)
T ss_pred hhccccchhhhhccceecCchhhhhh-hhhccceeeeh
Confidence 55533333444556666666544332 22234454444
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.5 Score=40.43 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=52.7
Q ss_pred ceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc---ccceeec--cccCceEEEEEcC--CC--cEEEEEc
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL---TEEMVLE--KHRGAITVIQYSP--DV--SMFASAD 513 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~--~~~~~i~~~~~s~--~~--~~l~~~~ 513 (612)
.++++....++..|+......+|+++-++.-|.-|+.+...- ....... .....|-.|++-. ++ -+|++.-
T Consensus 200 lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 200 LVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp EEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred EEEEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 345555556788999999999999999998888888763221 1111111 2335677777643 33 3555666
Q ss_pred CCCeEEEEecCCc
Q 007229 514 GNREAIVWDRVSK 526 (612)
Q Consensus 514 ~d~~i~iwd~~~~ 526 (612)
.+++..||+.+..
T Consensus 280 G~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 280 GDNSFAVYDREGP 292 (381)
T ss_dssp GGTEEEEEESSTT
T ss_pred CCCeEEEEecCCC
Confidence 6789999998764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.024 Score=56.19 Aligned_cols=176 Identities=17% Similarity=0.244 Sum_probs=104.8
Q ss_pred CEEEEEeCC--CCceeeEec-----cCCCceEEEEECC---CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEE
Q 007229 39 RSVLIRYLD--KPLHVEFYG-----EHGYPVTVARYSP---NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDL 108 (612)
Q Consensus 39 ~~i~i~~~~--~~~~~~~~~-----~h~~~v~~~~~s~---d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 108 (612)
|.+.||+++ .|+.+..+. .-...+.-+.|.| +.-++..+..+++|++-.+.+... ..+..|..++..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccH
Confidence 677888876 454433322 2223344455554 677888888899998877776542 4555687766665
Q ss_pred E-----------ECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCC-ceEEEEEEcCCCC---------EEEEE
Q 007229 109 Q-----------WSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHS-RRVLSCEFKPTRP---------FRIAT 165 (612)
Q Consensus 109 ~-----------~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~-~~v~~~~~~~~~~---------~~l~~ 165 (612)
+ .||||+.++.+..++...+.++++.. .-++++..+.|+ .+-.|.-|+.+.. +++-+
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence 4 58999999999999865555555554 345666777777 3333333443321 22333
Q ss_pred eecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC------------eEEEEEcCCcEEEEec
Q 007229 166 CGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS------------KLISVSSDRKGLIYDG 219 (612)
Q Consensus 166 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l~~~~~dg~i~vwd~ 219 (612)
...+..+++|.....++. +....+.|..+. -++++ .+++-.-++.|.+|--
T Consensus 311 td~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 311 TDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred ccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 344578999988777766 222223344444 23332 1233445777888853
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.069 Score=30.66 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=27.3
Q ss_pred CceEEEEECCCC---CEEEEeeCcCeEEEeecCCC
Q 007229 60 YPVTVARYSPNG---EWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 60 ~~v~~~~~s~d~---~~las~~~d~~i~iwd~~~~ 91 (612)
+.|.++.|||+. .+||.+-..|.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 59999999999999999964
|
It contains a characteristic DLL sequence motif. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.64 E-value=3.3 Score=42.92 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=71.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccc--------eEEEEEC----------------CCCCeEEEEEcCCcEEEE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNF--------VNCIRFS----------------PDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--------v~~~~~s----------------~~~~~l~~~~~dg~i~vw 217 (612)
.+..++.++.|.-.|..+|+.+..+...... ...+++. .++..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5777888888988999998888775432210 1122221 134578889999999999
Q ss_pred ecCCCCeeeeeeccCCccccEE-------------EEEEec--CCCEEEEEeC----------CCcEEEEEeecCCCCCe
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIY-------------AVSWSP--DGKKVLTVSA----------DKSAKVWEILEDGSGGR 272 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~-------------~i~~~~--~~~~l~~~~~----------dg~i~iw~~~~~~~~~~ 272 (612)
|.++|+....+ +..+.+. .+.-.| .+..+++++. +|.|+-+|. .+++
T Consensus 276 DA~TGk~~W~f----g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da----~TGk 347 (764)
T TIGR03074 276 DADTGKLCEDF----GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV----NTGA 347 (764)
T ss_pred ECCCCCEEEEe----cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC----CCCc
Confidence 99999999776 2222211 111112 1334555542 578999999 8898
Q ss_pred eEeeeecc
Q 007229 273 VIKTFASS 280 (612)
Q Consensus 273 ~~~~~~~~ 280 (612)
.+-.+...
T Consensus 348 l~W~~~~g 355 (764)
T TIGR03074 348 LVWAWDPG 355 (764)
T ss_pred EeeEEecC
Confidence 88777643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.41 Score=47.31 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=74.2
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc-ccccceEEEEEC--CCCCeEEEEEcCCcEEEEecC------
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR-EHSNFVNCIRFS--PDGSKLISVSSDRKGLIYDGK------ 220 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~------ 220 (612)
..-+.-+.-++ ..+.-+....+.|||...+.....-. ...+.|..+.|. |+++.+++.+..+.|.+|.-.
T Consensus 32 ~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444444444 34444455689999999887655432 456789999996 689999999999999998532
Q ss_pred ---CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 221 ---SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 221 ---~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+-..+..+....-...+|.+..|.++|.+++.+ .+.+.+++-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 112333333322233688999999999755544 357888875
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.1 Score=43.97 Aligned_cols=145 Identities=11% Similarity=0.043 Sum_probs=78.0
Q ss_pred cCCCeEEEEecC--CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC---eEEEEecCCcceeeec-c
Q 007229 460 PDGSEAIVGGQN--GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR---EAIVWDRVSKEVKLNN-M 533 (612)
Q Consensus 460 ~~~~~l~~~~~d--g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~ 533 (612)
-+++..++|+.+ ..+..||..+++......+........ ...-+|+..+.|+.++ .+..||..+.+-.... .
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~--~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPA--VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccE--EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 466777777754 357888887766533333332111112 2233777888887653 4677887765432111 1
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC-----CeEEEEE
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED-----ACIRVWR 608 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d-----~~i~~w~ 608 (612)
....... ++ ..-++++.+.|+ .+.+||.++..+..+..+....... +++..+++..+.||.+ ..+..||
T Consensus 395 ~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 395 YYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred CCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEE
Confidence 1011111 12 223667667664 4778998874433333333222222 2333378888888754 4678888
Q ss_pred eccC
Q 007229 609 LATE 612 (612)
Q Consensus 609 ~~~~ 612 (612)
.+++
T Consensus 469 ~~~~ 472 (480)
T PHA02790 469 NRTY 472 (480)
T ss_pred CCCC
Confidence 7754
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.55 E-value=3.4 Score=42.44 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=51.5
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCC----------CCe--e-eeeec-----cCCccccEEEEEEecC---CCE
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS----------GEK--I-GEFSS-----EDGHHGSIYAVSWSPD---GKK 249 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------~~~--~-~~~~~-----~~~~~~~v~~i~~~~~---~~~ 249 (612)
-.|..+.++|+|++|+..|..| |.|-.+.. |+. . ..+.. .......|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999988766 44443321 111 1 11110 1134568999999995 578
Q ss_pred EEEEeCCCcEEEEEee
Q 007229 250 VLTVSADKSAKVWEIL 265 (612)
Q Consensus 250 l~~~~~dg~i~iw~~~ 265 (612)
|++-..|+.+++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999994
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=2 Score=39.74 Aligned_cols=274 Identities=11% Similarity=0.031 Sum_probs=132.6
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEe----ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFY----GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~----~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.....+++|..+.+-++++..+.|.. ..+.|+.-+.. ......+.++.|.++. ..+.+ ..+.| +...++-.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~-~~~~G-~~g~i--~~S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGDE-GWIVG-QPSLL--LHTTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCEEEE-EcCCCCCceECccCCcccccceeeeEEcCCc-EEEeC-CCceE--EEECCCCC
Confidence 44788899997777788887665432 23333332221 1123457788887543 44444 44443 22332211
Q ss_pred eeeeee---ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeec-cCCceEEEEEEcCCCCEEEEEeec
Q 007229 94 LKNEFK---VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 94 ~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
-..... ...+....+....++...++ +..+ .++.-. .|+.-..+. .-...+..+.+.|++. .+++ +.
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G-----~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~-g~ 191 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVG-----AIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAV-SS 191 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCcceee-eccc-----eEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEE-eC
Confidence 111111 01111122222222222333 3222 133322 333222222 2245788999999986 3444 44
Q ss_pred CCeEEE-EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc-CCccccEEEEEEecC
Q 007229 169 DFLVNF-YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE-DGHHGSIYAVSWSPD 246 (612)
Q Consensus 169 d~~i~~-wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~~~~ 246 (612)
.|.+.. ++-...........-...++++.+.++++.+++ +..|.+++=....|......... ......+.++.+.++
T Consensus 192 ~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 192 RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 554443 232211122222234567899999999987665 45676653234555544433111 012345788999988
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
++.++ ++.+|.+. ... ..++.-........ ...........+++..++.+..|.|..++
T Consensus 271 ~~~~~-~G~~G~v~-~S~----d~G~tW~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 271 GEIWA-GGGNGTLL-VSK----DGGKTWEKDPVGEE-VPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCEEE-EcCCCeEE-EeC----CCCCCCeECCcCCC-CCcceEEEEEeCCCceEEECCCceEEEec
Confidence 77554 55677554 333 33333222221110 01122223334567778888888887776
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.036 Score=55.01 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=84.4
Q ss_pred CCeEEEEEcc--Cccccccee---eccccCceEEEEEcC---CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 471 NGKLHIYSIS--GNTLTEEMV---LEKHRGAITVIQYSP---DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 471 dg~v~i~d~~--~~~~~~~~~---~~~~~~~i~~~~~s~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
-|.+.||+++ .|++.+... .......+.-+.|.| +.-++..+..++++++..+.+... ..+.+|...++.
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTD 229 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCccc
Confidence 3678888875 344322222 222233445555555 667888888899999887766554 445567776665
Q ss_pred EE-----------ecCCCcEEEEeecCcEEEEEEccCCC---cceeeeecccccCeee-EEEecC----------ceEEE
Q 007229 543 LA-----------WSPSSTMVATGSIDTCVIIYEIGKPA---SSRITIKNAHLGGVYG-VAFMDD----------FNVVS 597 (612)
Q Consensus 543 ~~-----------~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~h~~~v~~-~~~~~~----------~~l~s 597 (612)
++ .||||+.+|.++.||.++.|.+.-.+ ..|+...+.|.+.-.. ..|.+. .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 43 68999999999999999999874312 1456666777643222 222221 13444
Q ss_pred cc-CCCeEEEEEe
Q 007229 598 SG-EDACIRVWRL 609 (612)
Q Consensus 598 ~~-~d~~i~~w~~ 609 (612)
++ .+..+++|.-
T Consensus 310 ttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 310 TTDVNREEKFWAE 322 (1283)
T ss_pred cccCCcceeEeec
Confidence 43 4667888864
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.7 Score=40.32 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=49.6
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
...+|.++.+...+. +-.|+.|| +..||..+++....-.... .+|..+..+-.|+ |..|+.+| +.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhh
Confidence 346788888888885 78888888 6677877777665543333 5677776666665 66677655 78887665
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.7 Score=39.72 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=87.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCcee--eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTV--GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
....+..++||.+++.+.... .+..++.+... ..-......++.+.|.+++. ++..+.+|.+..- ...++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~-----~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~--l~l~g~~G~l~~S-~d~G~ 311 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGN-----FYLTWEPGQPYWQPHNRASARRIQNMGWRADGG--LWLLTRGGGLYVS-KGTGL 311 (398)
T ss_pred ceeeEEEcCCCCEEEEECCcc-----EEEecCCCCcceEEecCCCccceeeeeEcCCCC--EEEEeCCceEEEe-cCCCC
Confidence 345567789988887776654 24456666542 12223356789999999997 3344456655433 22332
Q ss_pred -----eeeccc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 182 -----FKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 182 -----~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
...... .....+.++.|.++++.++ ++..|.+.... ..|+.-........-....+.+.|.++++.++++
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G- 388 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG- 388 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence 111111 1223588999998877555 56678666654 5565544442112345678899998777756554
Q ss_pred CCCcEEEE
Q 007229 255 ADKSAKVW 262 (612)
Q Consensus 255 ~dg~i~iw 262 (612)
.+|.|.-|
T Consensus 389 ~~G~il~~ 396 (398)
T PLN00033 389 NDGVLLRY 396 (398)
T ss_pred CCcEEEEe
Confidence 67776544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.47 Score=46.87 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=76.4
Q ss_pred eccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec-cCCCceEEEEEC--CCCCEEEEeeCcCeEEE
Q 007229 10 YACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYS--PNGEWIASADVSGSVRI 85 (612)
Q Consensus 10 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s--~d~~~las~~~d~~i~i 85 (612)
....-.+.....+-+.-|.-++.-++-+ +..+.|||...+.....-. ...+.|..+.|. |||+.+.+.+..+.|.+
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 3333344455667777777666655555 5799999999887543322 357889999986 58998888889999999
Q ss_pred eecC-----CCce----ee-eeeeecC-CCeEEEEECCCCCEEEEEeC
Q 007229 86 WGTH-----NGFV----LK-NEFKVLS-GRIDDLQWSPDGLRIVACGD 122 (612)
Q Consensus 86 wd~~-----~~~~----~~-~~~~~~~-~~i~~~~~s~~~~~l~~~~~ 122 (612)
+.-. ...+ +. ..+..+. .+|.+..|.++|..++.+|.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 8542 2111 11 1223333 57999999999977776654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=3.6 Score=40.91 Aligned_cols=199 Identities=12% Similarity=0.175 Sum_probs=91.9
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCC----Cceeeeeee---ecCCCeEEEEECC-----CCCEEEEEeC-CCCe
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHN----GFVLKNEFK---VLSGRIDDLQWSP-----DGLRIVACGD-GKGK 126 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~----~~~~~~~~~---~~~~~i~~~~~s~-----~~~~l~~~~~-~~~~ 126 (612)
..-..++..|.|+.+|.+..++.+.|+-+.. .......+. .....|..++|.. +...++.--. ....
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~ 123 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR 123 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence 3456799999999999999999999999887 110111111 1266788999985 3334444322 2334
Q ss_pred eeEEEEEecCCceeeee-ccCC----------ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC--C--eeeec-c--cc
Q 007229 127 SFVRAFMWDSGTTVGDF-DGHS----------RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP--F--KFKLS-H--RE 188 (612)
Q Consensus 127 ~~i~i~~~~~~~~~~~~-~~~~----------~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~--~~~~~-~--~~ 188 (612)
..+..+.|+....+... .... .+..-+..-....+ ++.++.. .+..-+... + ..... . ..
T Consensus 124 ~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~gg-llV~~~~-~i~y~~~~~~~~~~~~~~~~~~~~~ 201 (504)
T PF10433_consen 124 THLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGG-LLVGGEN-IIIYKNHLIGSGDYSFLSIPSPPSS 201 (504)
T ss_dssp EEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-S-EEEEESS-EEEEEE------TTEEEEE--H-HH
T ss_pred ceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcE-EEEECCE-EEEEecccccccccccccccCCccC
Confidence 45677777754433221 1111 11112222222222 3333333 233222111 1 11111 1 01
Q ss_pred cccceEEEE-------ECCCCCeEEEEEcCCcEEEEecCCCC---eeeeeeccCCc-cccEEEEEEecCC-CEEEEEeCC
Q 007229 189 HSNFVNCIR-------FSPDGSKLISVSSDRKGLIYDGKSGE---KIGEFSSEDGH-HGSIYAVSWSPDG-KKVLTVSAD 256 (612)
Q Consensus 189 ~~~~v~~~~-------~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~-~~~v~~i~~~~~~-~~l~~~~~d 256 (612)
...-+.+.+ ...++..++.+.++|.+....+.... .+..+ +. .....++++..+| .+++.|+.-
T Consensus 202 ~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~----g~~~~~~s~l~~l~~g~d~lf~gs~~ 277 (504)
T PF10433_consen 202 SSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYL----GTLCSIASSLTYLKNGGDYLFVGSEF 277 (504)
T ss_dssp HTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE----EE--S-ESEEEEESTT--EEEEEESS
T ss_pred CCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc----CCcCChhheEEEEcCCCEEEEEEEec
Confidence 122233333 24566788889999999988776544 22222 22 4455677777655 367777776
Q ss_pred CcEEEEEe
Q 007229 257 KSAKVWEI 264 (612)
Q Consensus 257 g~i~iw~~ 264 (612)
|.=.++.+
T Consensus 278 gds~l~~~ 285 (504)
T PF10433_consen 278 GDSQLLQI 285 (504)
T ss_dssp S-EEEEEE
T ss_pred CCcEEEEE
Confidence 65555555
|
... |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.5 Score=36.39 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=88.0
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC---C---eEEEE---ec
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN---R---EAIVW---DR 523 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~---~i~iw---d~ 523 (612)
...++-++. +.|+++.....|.+|++..........+..- +.|..+.++..|.+|++--++ . .+|+| +.
T Consensus 20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 333444432 4555556777899999996555555666554 789999999999999987443 2 56665 22
Q ss_pred C--Ccceeeecccc---------------------cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCc--ce--eee
Q 007229 524 V--SKEVKLNNMLF---------------------HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS--SR--ITI 576 (612)
Q Consensus 524 ~--~~~~~~~~~~~---------------------~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~--~~~ 576 (612)
. ...++.....| -..++.+++-.|-..-|+.|+ ++.+.+|.+..... +. +.-
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEe
Confidence 2 11222112222 234567788777544455665 45699998865210 00 001
Q ss_pred e-----ccccc-CeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 577 K-----NAHLG-GVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 577 ~-----~~h~~-~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
+ .-|.+ ....+++. +.+++..+ |-.+++.++.
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic-~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC-EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred chhhhhheecCceEEEEEEE-eeEEEEec-CCEEEEEEEe
Confidence 1 11111 24566665 66777666 4467787764
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=29.82 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=26.9
Q ss_pred CceEEEEEcCCC---cEEEEEcCCCeEEEEecCCc
Q 007229 495 GAITVIQYSPDV---SMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 495 ~~i~~~~~s~~~---~~l~~~~~d~~i~iwd~~~~ 526 (612)
+.|+++.|||+. .+|+.+-.-+.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58998888899999999864
|
It contains a characteristic DLL sequence motif. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.7 Score=38.83 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=43.7
Q ss_pred ccceEEEEEEcc-------CCCeEEEEecCCeEEEEEccCc-cccccee-eccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 449 LGFTVTACAIAP-------DGSEAIVGGQNGKLHIYSISGN-TLTEEMV-LEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 449 ~~~~i~~~~~s~-------~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
+...+..+.|-. .+.+++.....+.|....++.+ ....... +.....++..+++.|||.+.++.+.+|.|+
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 334566666653 3455666555678888888644 2222222 334455899999999999999988888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.3 Score=39.77 Aligned_cols=150 Identities=8% Similarity=-0.071 Sum_probs=74.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC-ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS-RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 103 ~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
..|..+.+..+|.+ -+++.++ +..++..+++.++.-.... .+|..+..+-.++ +..|+.+| +.+.+.+..+
T Consensus 165 ~~V~aLv~D~~g~l-WvgT~dG----L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 165 TPVVALVFDANGRL-WVGTPDG----LSYFDAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred ccceeeeeeccCcE-EEecCCc----ceEEccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhcc
Confidence 35666677666643 3445554 1223333444444433333 5566666666664 88888777 6666655533
Q ss_pred eeeccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 182 FKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 182 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
...-.. -....|..+.-..+| .+-.|+..|.. ......+...............|.++....+|. |-+++.+|.++
T Consensus 237 ~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~-r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~ 313 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLW-RTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR 313 (671)
T ss_pred ccccCCCCcchheeeeecccCC-CEEEeecccce-eEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence 222111 122334444433344 35556655533 233343333333322212234566777777776 55566666555
Q ss_pred EEE
Q 007229 261 VWE 263 (612)
Q Consensus 261 iw~ 263 (612)
+-+
T Consensus 314 ~~~ 316 (671)
T COG3292 314 YLT 316 (671)
T ss_pred Eec
Confidence 543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.10 E-value=4.9 Score=41.70 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
+..|+.++.++.|.-.|..+|+.+-++.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFD 221 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc
Confidence 4567778888999999999999888873
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.9 Score=43.39 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=90.2
Q ss_pred CCeEEEEecCCeEEEEEccCcccccc----eeec----------------cccCceEEEEEcC--CCcEEEEEcCCCeEE
Q 007229 462 GSEAIVGGQNGKLHIYSISGNTLTEE----MVLE----------------KHRGAITVIQYSP--DVSMFASADGNREAI 519 (612)
Q Consensus 462 ~~~l~~~~~dg~v~i~d~~~~~~~~~----~~~~----------------~~~~~i~~~~~s~--~~~~l~~~~~d~~i~ 519 (612)
+.+++++. .+.|+||+++.-...+. ..+. .....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66677655 67899998864332110 0000 0111355554443 456889999999999
Q ss_pred EEecCCcc-----------e---e---e-ecccccccceeEEEec--CCCcEEEEeecCcEEEEEEccCCCccee--eee
Q 007229 520 VWDRVSKE-----------V---K---L-NNMLFHTARINCLAWS--PSSTMVATGSIDTCVIIYEIGKPASSRI--TIK 577 (612)
Q Consensus 520 iwd~~~~~-----------~---~---~-~~~~~~~~~i~~~~~s--~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~ 577 (612)
+|.+++-. . . . .....-....+.++++ ...++||+++....|.||-+.... ... ..-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~-~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD-ERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc-cccccccc
Confidence 99652210 0 0 0 0011123468889998 788899999988889888776521 111 112
Q ss_pred cccccCeeeEEEe-cC---c---eEEEccCCCeEEEEEe
Q 007229 578 NAHLGGVYGVAFM-DD---F---NVVSSGEDACIRVWRL 609 (612)
Q Consensus 578 ~~h~~~v~~~~~~-~~---~---~l~s~~~d~~i~~w~~ 609 (612)
..|...|-+|+|. +. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2366679999998 22 2 6888899999999987
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=94.94 E-value=4.4 Score=40.31 Aligned_cols=367 Identities=11% Similarity=0.003 Sum_probs=160.0
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCC--------cee-eEeccCCCceEEEEECC-----CCCEEEEe--eCc-
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKP--------LHV-EFYGEHGYPVTVARYSP-----NGEWIASA--DVS- 80 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~--------~~~-~~~~~h~~~v~~~~~s~-----d~~~las~--~~d- 80 (612)
....-++.+|.|+.++.+. ++.+.|+-++.. ... ..+ .....|..++|-. +...+|.- ...
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 3456799999999999987 899999988761 111 111 1267788888885 33445442 222
Q ss_pred -CeEEEee--cCCCce------eee--eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC---ceeeeecc-
Q 007229 81 -GSVRIWG--THNGFV------LKN--EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG---TTVGDFDG- 145 (612)
Q Consensus 81 -~~i~iwd--~~~~~~------~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~- 145 (612)
..+..++ ...+.. ... ....+..+..-+..-.....++.++.+- +....-+.. ........
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~~----i~y~~~~~~~~~~~~~~~~~~ 198 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGENI----IIYKNHLIGSGDYSFLSIPSP 198 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEESSE----EEEEE------TTEEEEE--H
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECCEE----EEEecccccccccccccccCC
Confidence 2244444 433211 000 0011222322222222233444444442 112211111 11122211
Q ss_pred ---CCceEEEEEE-------cCCCCEEEEEeecCCeEEEEeCCCCe--eeeccccc-ccceEEEEECCCC-CeEEEEEcC
Q 007229 146 ---HSRRVLSCEF-------KPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREH-SNFVNCIRFSPDG-SKLISVSSD 211 (612)
Q Consensus 146 ---~~~~v~~~~~-------~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~d 211 (612)
...-+.+.+. ..++. .++.+.++|.+..-.+.... .....-+. .....++.+..+| .+|+.|+.-
T Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~~~~-~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~ 277 (504)
T PF10433_consen 199 PSSSSSLWTSWARPERNISYDKDGD-RILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF 277 (504)
T ss_dssp -HHHTS-EEEEEE------SSTTSS-EEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS
T ss_pred ccCCCceEEEEEeccccceecCCCC-EEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec
Confidence 1233344332 34444 68889999999888765533 12222233 4556677776655 477778774
Q ss_pred C--cEEEEecCCCCeeeeeeccCCccccEEEEEEecC----CC------EEEEEe---CCCcEEEEEeecCCCCCeeEee
Q 007229 212 R--KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD----GK------KVLTVS---ADKSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 212 g--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~------~l~~~~---~dg~i~iw~~~~~~~~~~~~~~ 276 (612)
| .+.-|....-+.+..+ ..-+||..+++.+. .. .+++++ .+|.+++..- .-+-....
T Consensus 278 gds~l~~~~~~~l~~~~~~----~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~----Gi~~~~~~ 349 (504)
T PF10433_consen 278 GDSQLLQISLSNLEVLDSL----PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN----GIGIEGLE 349 (504)
T ss_dssp S-EEEEEEESESEEEEEEE--------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE----SBEEE--E
T ss_pred CCcEEEEEeCCCcEEEEec----cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec----cCCceeee
Confidence 4 4555554444555555 56788999998642 11 455554 4678888864 11111001
Q ss_pred eeccCccccceeeeeeeccC--CEEEEEEcCCEEEEEEcCC--CCCCceeec--CcccceeEEEEEecCCcEEEEEecCC
Q 007229 277 FASSTSNAVEDMLVGCLWQN--DHLITVSLGGIISIFSASN--LDKAPLSFS--GHVKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
.....-.. -..++.+.... ...+..+....-.++.+.. ......... +-......+....-.+..++=... .
T Consensus 350 ~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~-~ 427 (504)
T PF10433_consen 350 LASSELPG-VTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTP-K 427 (504)
T ss_dssp EEEEEEST-EEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEES-S
T ss_pred eeccCCCC-ceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEec-C
Confidence 11111111 22333333322 4444444555556666541 111111111 222222233333211444444443 3
Q ss_pred cEEEEEcCCceeeeec-eecccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 351 AIIKWIRGVGYSSKLE-KKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
.|++.+....+..... ......|.+.+..+.+++.+..++.+..+.+....
T Consensus 428 ~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~ 479 (504)
T PF10433_consen 428 GIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNK 479 (504)
T ss_dssp EEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTE
T ss_pred eEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCc
Confidence 4677776555544332 22455666666677777777777777777665443
|
... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.29 Score=39.98 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=48.1
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCc--------------------eeeEecc---------------------CC
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPL--------------------HVEFYGE---------------------HG 59 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~--------------------~~~~~~~---------------------h~ 59 (612)
..+++||.|| .||++.+..|.|.+..++. ....+.. ..
T Consensus 7 ~~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 7 PNALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CcCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 3589999999 5788888888888443322 0000100 11
Q ss_pred CceEEEEECCCC------CEEEEeeCcCeEEEeecCCC
Q 007229 60 YPVTVARYSPNG------EWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 60 ~~v~~~~~s~d~------~~las~~~d~~i~iwd~~~~ 91 (612)
..|.+++|||-| -+||+...++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 278899999954 37888899999999987753
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.25 Score=42.05 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=51.5
Q ss_pred EcCCCcEEEEEcCCCeEEEEecCCcceeeec------cc-------ccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 502 YSPDVSMFASADGNREAIVWDRVSKEVKLNN------ML-------FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 502 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+..++.+|++...+|.+++||+.+++..... +. .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999998875433 22 2456788999998888777655 57789998775
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=94.55 E-value=3.9 Score=37.85 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=28.4
Q ss_pred cCCCeEEEEecCC----eEEEEEccCcccccceeeccccCce---EEE-EEcCCCcEEEEEcCC
Q 007229 460 PDGSEAIVGGQNG----KLHIYSISGNTLTEEMVLEKHRGAI---TVI-QYSPDVSMFASADGN 515 (612)
Q Consensus 460 ~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~i---~~~-~~s~~~~~l~~~~~d 515 (612)
.++++.+.|+.++ .+.+||..+.+......+.....+. ... ....++++++.|+.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 3556666666543 3568888877663322221001111 111 122356788888765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.51 E-value=7.1 Score=40.73 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=90.0
Q ss_pred eEEEEEEccCCC--eEEEEe-----------cCCeEEEEEccC-cccccceeeccccCceEEEEEcCCCcEEEEEcCCCe
Q 007229 452 TVTACAIAPDGS--EAIVGG-----------QNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNRE 517 (612)
Q Consensus 452 ~i~~~~~s~~~~--~l~~~~-----------~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 517 (612)
.+..+.|+.... ++++|. .+|.++.|++-. ++......-..-.+++. +..|-..++.+|- ...
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lagv-G~~ 955 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGV-GRF 955 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEec-ccE
Confidence 455666665333 344443 245577777632 22100111111223344 4557555555553 358
Q ss_pred EEEEecCCcceeeeccccc-ccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccc--ccCeeeEEEecCce
Q 007229 518 AIVWDRVSKEVKLNNMLFH-TARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH--LGGVYGVAFMDDFN 594 (612)
Q Consensus 518 i~iwd~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~ 594 (612)
+++||+...+++.+....+ ...|+.+++ .+..+++|..--.+.++..+... ..+..+..- ...|+.+.+.|...
T Consensus 956 l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~-n~l~~fadD~~pR~Vt~~~~lD~~t 1032 (1205)
T KOG1898|consen 956 LRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED-NQLIVFADDPVPRHVTALELLDYDT 1032 (1205)
T ss_pred EEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC-CeEEEEeCCCccceeeEEEEecCCc
Confidence 9999998887764433323 667888888 46688888876678777776644 555554332 23577776668888
Q ss_pred EEEccCCCeEEEEEec
Q 007229 595 VVSSGEDACIRVWRLA 610 (612)
Q Consensus 595 l~s~~~d~~i~~w~~~ 610 (612)
++.+..=|.+.+=++.
T Consensus 1033 vagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1033 VAGADRFGNIAVVRIP 1048 (1205)
T ss_pred eeeccccCcEEEEECC
Confidence 8888877777765553
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.50 E-value=5.8 Score=39.65 Aligned_cols=195 Identities=11% Similarity=0.059 Sum_probs=97.1
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece---ecccceEEEEeeccEE
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK---KYDARIKCLAAVEEVI 383 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~i~~~~~~~~~l 383 (612)
.|.+|+.. +..+.........+..+.|++ ...|+....+|++.+|++.......... .....|....+..+-+
T Consensus 65 ~I~If~~s--G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS--GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc--ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 45555533 233333333344777888887 7888999999999999987655444211 1333344444422334
Q ss_pred EEecCCCeEEEEe-cCCCCCCccceecc-CCCcceeeecCCC-CcEEEEEee--ccEEEee---cccceeeec-ccceEE
Q 007229 384 FTAGFDNKVWRVP-LCEGECGDAEHIDV-GSQPLDLSLALSS-PELALVSTE--SGVILLD---SLKVMSKID-LGFTVT 454 (612)
Q Consensus 384 ~~~~~~~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~---~~~~~~~~~-~~~~i~ 454 (612)
+.-..+|.+.+.+ ...........+.. ..+..+.+..+.+ ....+..-. -+..+.. .......+. ....+.
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 4444444443332 22222111111111 1111222222221 111111111 1111111 111111122 336788
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCC
Q 007229 455 ACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDV 506 (612)
Q Consensus 455 ~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (612)
.+.+||+.++|+.-...|.|.+-+.+..+.........|.-+ ..++|.-+.
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgnd 271 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGND 271 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCC
Confidence 899999999999999999999998887665333333333332 255665443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.38 E-value=5.8 Score=40.13 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=76.9
Q ss_pred ceEEEEEEcc--CCCeEEEEecCCeEEEEEccCcc------------------cccceeeccccCceEEEEEc--CCCcE
Q 007229 451 FTVTACAIAP--DGSEAIVGGQNGKLHIYSISGNT------------------LTEEMVLEKHRGAITVIQYS--PDVSM 508 (612)
Q Consensus 451 ~~i~~~~~s~--~~~~l~~~~~dg~v~i~d~~~~~------------------~~~~~~~~~~~~~i~~~~~s--~~~~~ 508 (612)
..|+-|.+.. +...|+.+..||.|.+|.++.-. ..+...+. -......++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 3455565544 55788999999999999763200 00111111 23468889998 78889
Q ss_pred EEEEcCCCeEEEEecCCc--ceeeecccccccceeEEEecCCC---c---EEEEeecCcEEEEEEc
Q 007229 509 FASADGNREAIVWDRVSK--EVKLNNMLFHTARINCLAWSPSS---T---MVATGSIDTCVIIYEI 566 (612)
Q Consensus 509 l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~s~~~---~---~l~s~~~d~~i~iwd~ 566 (612)
||+++....|.||-.... +.....-..|...|-+|.|-++. . +|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999998888888865442 21111112256678999998744 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=3.5 Score=40.53 Aligned_cols=186 Identities=9% Similarity=-0.049 Sum_probs=82.7
Q ss_pred cCCCEEEEec-C-----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--CeEEEeecCCCceeeeeee
Q 007229 28 PKTDTILYCN-G-----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 28 ~d~~~l~~~~-~-----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~~~~~~~ 99 (612)
.++..++.|+ + ..+..||..+++-...-.-....-......-+|++.+.|+.+ ..+..||..+.+- ....
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W--~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAW--VNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeE--EECC
Confidence 3444555554 2 367778887754332111111111111223477888888754 3577888765532 1111
Q ss_pred ecCCCe-EEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe
Q 007229 100 VLSGRI-DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176 (612)
Q Consensus 100 ~~~~~i-~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 176 (612)
.-..+. ...+..-+|+..+.||.+.....+..++..+++ .+..+....... +++ .-++. +.+.|+ .+.+||
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~-IYv~GG---~~e~yd 421 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRR-LFLVGR---NAEFYC 421 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCE-EEEECC---ceEEec
Confidence 111111 112223367777777755432233444433221 111111111111 121 22343 566663 467888
Q ss_pred CCCCeeeec--ccccccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCCC
Q 007229 177 GPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSGE 223 (612)
Q Consensus 177 ~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~ 223 (612)
..+.+-... +.........+. -+++..+.|+.+ ..+..||.++++
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 776554322 221112222222 256666666654 245566665543
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.22 E-value=8.2 Score=40.29 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=67.9
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE--EecCCcceeeecc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV--WDRVSKEVKLNNM 533 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i--wd~~~~~~~~~~~ 533 (612)
.|+.|-+.++.+| ....+++||+...++.....++.-...|+.+++ .+..++.|+..-.+.+ |+-+..+.+.-.-
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 4556655555544 446899999998877555555544566787776 4567888876656655 4544454432222
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..-...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 2234457777666 444677777777777776643
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.4 Score=41.34 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=90.7
Q ss_pred CCCCCEEEE-eeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCC--------CCEEEEEeCCCCeeeEEEEEec---
Q 007229 68 SPNGEWIAS-ADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD--------GLRIVACGDGKGKSFVRAFMWD--- 135 (612)
Q Consensus 68 s~d~~~las-~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~--------~~~l~~~~~~~~~~~i~i~~~~--- 135 (612)
..|..+|.. |+....+.--|++.|+ +......|..- -+.|.|+ .+.|+..+..+ |+..+
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s------vFrIDPR~ 546 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS------VFRIDPRA 546 (776)
T ss_pred cCCcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc------eEEecccc
Confidence 335555543 5555667777888887 55566666554 5667774 34566666655 55555
Q ss_pred CCceeeeecc----CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 136 SGTTVGDFDG----HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 136 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
.|..+..... ......+..-...| .+|.++..|-|++||--..+....+++....|..+..+.+|+++++.|.
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk- 623 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK- 623 (776)
T ss_pred cCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-
Confidence 3433332221 11122233333344 4999999999999996666666667888889999999999999887764
Q ss_pred CcEEEEecC
Q 007229 212 RKGLIYDGK 220 (612)
Q Consensus 212 g~i~vwd~~ 220 (612)
..+.+-|+.
T Consensus 624 ~yllL~d~~ 632 (776)
T COG5167 624 NYLLLTDVP 632 (776)
T ss_pred ceEEEEecc
Confidence 567777753
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=94.05 E-value=4.6 Score=36.75 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=116.7
Q ss_pred ccCCCEEEEecCCEEEEEeCCC--CceeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCCCce----------
Q 007229 27 NPKTDTILYCNGRSVLIRYLDK--PLHVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHNGFV---------- 93 (612)
Q Consensus 27 s~d~~~l~~~~~~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~~~---------- 93 (612)
.-++++|+.|.+..+++.++.. .+..+ + .+...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 10 ~~~~~~lL~GTe~Gly~~~~~~~~~~~~k-l-~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~ 87 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLNISDQPGTLEK-L-IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARL 87 (302)
T ss_pred ccCCcEEEEEeCCceEEEEcccCCCCeEE-e-cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccc
Confidence 3345789999987777778765 23333 2 3577999999999887777654 444599999853321
Q ss_pred ----eeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCc----eeeee---c-cCCceEEEEEEcCC--
Q 007229 94 ----LKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGT----TVGDF---D-GHSRRVLSCEFKPT-- 158 (612)
Q Consensus 94 ----~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~----~~~~~---~-~~~~~v~~~~~~~~-- 158 (612)
.....-.+..+........... .++.+.... .+.++.|.... ....+ . --..++..+..+++
T Consensus 88 ~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~---~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T smart00036 88 VIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQS---SVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFE 164 (302)
T ss_pred cccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCC---eEEEEEccChhhhhhhhcccccccCCCCccceEeeeccccc
Confidence 0001112333333333332221 222222222 46777776321 11110 0 11223333333333
Q ss_pred CCEEEEEeecCCeEEEEeCCC--Ceeee-----cccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecCCC-Ceee--e
Q 007229 159 RPFRIATCGEDFLVNFYEGPP--FKFKL-----SHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG-EKIG--E 227 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~--~~~~~-----~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~--~ 227 (612)
.. .++.|+..+...++++.. ..... ...... .++.... -+++.+|++ .|....+-|.. | +... .
T Consensus 165 ~~-~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc--~~~~~v~Vn~~-G~~~~r~~~ 239 (302)
T smart00036 165 RP-GICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLC--YDEFGVFVNLY-GKRRSRNPI 239 (302)
T ss_pred ce-EEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEE--ECcEEEEEeCC-CCccccceE
Confidence 33 466665542344444432 11000 011111 3333333 445555553 34455566644 4 2211 2
Q ss_pred eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 228 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
+ .-...+.++++. ..+++.-.. ..|.++++ .+++.++.+..
T Consensus 240 l----~w~~~p~~~~~~--~pyll~~~~-~~ievr~l----~~~~l~q~i~~ 280 (302)
T smart00036 240 L----HWEFMPESFAYH--SPYLLAFHD-NGIEIRSI----KTGELLQELAD 280 (302)
T ss_pred E----EcCCcccEEEEE--CCEEEEEcC-CcEEEEEC----CCCceEEEEec
Confidence 2 234556677777 356666654 56999999 88888887764
|
Unpublished observations. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=93.98 E-value=5.4 Score=37.26 Aligned_cols=138 Identities=11% Similarity=0.086 Sum_probs=64.8
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeecc---ccCceEEEEEcCCCcEEEEEcCC-----------CeEEEE
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEK---HRGAITVIQYSPDVSMFASADGN-----------REAIVW 521 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-----------~~i~iw 521 (612)
++++++.|+.+ ..+.+||+.+.+......+.. ........+..-++++.+.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45556666543 257889988776532222211 11111222223456777777753 247788
Q ss_pred ecCCcceeeeccc----ccccceeEEEecCCCcEEEEeecC-------------cEEEEEEccCCCcceeeeecc-ccc-
Q 007229 522 DRVSKEVKLNNML----FHTARINCLAWSPSSTMVATGSID-------------TCVIIYEIGKPASSRITIKNA-HLG- 582 (612)
Q Consensus 522 d~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~-h~~- 582 (612)
|..+.+-...... ........+. -++++.+.++.+ ..+.+||..+..+..+..... ...
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 8877643211100 0011111222 256666655432 358889988743222221100 111
Q ss_pred CeeeEEEecCceEEEccC
Q 007229 583 GVYGVAFMDDFNVVSSGE 600 (612)
Q Consensus 583 ~v~~~~~~~~~~l~s~~~ 600 (612)
...++...+++.++.|+.
T Consensus 243 ~~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGE 260 (341)
T ss_pred ceeeeEEECCEEEEECcc
Confidence 112222226777778775
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.97 E-value=5 Score=37.99 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=48.3
Q ss_pred CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
...++|+++..|-|++||--...- ...+++-...|..+..+.+|+++++.+.. .+.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rA--KtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRA--KTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchh--hhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 456899999999999999754443 45677788899999999999998877764 67777654
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.8 Score=40.90 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=60.6
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT 139 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~ 139 (612)
-.|..+..|+.|..+|-++.+|.+.++=..... ....+...+..|.|=.|+-+.+.+.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-~~s~~eDgk~~v~CRt~~i~~~~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-KNSEFEDGKSTVNCRTTPVAERFFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcC-ccceecCCCceEEEEeecccceeeccC-------------------
Confidence 357788899999999999888866554221111 111222222234444443333222111
Q ss_pred eeeeccCCceEEEEEEcCCC--CEEEEEeecCCeEEEEeCCCCeeeeccc
Q 007229 140 VGDFDGHSRRVLSCEFKPTR--PFRIATCGEDFLVNFYEGPPFKFKLSHR 187 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 187 (612)
..-.+..++|+|+. ...+..-+.|.+||+||+.....+....
T Consensus 164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred ------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 11245667888876 4468888899999999998877665433
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.94 E-value=6.9 Score=38.42 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=66.6
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeecc-ccCceEEEEEcCCCcEEEEEcCCC-----eEEEEecCCccee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEK-HRGAITVIQYSPDVSMFASADGNR-----EAIVWDRVSKEVK 529 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~ 529 (612)
++++.+.|+.+ ..+..||+.+.+......+.. ...+-...+..-++++.+.|+.++ .+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 44555666544 358889988876643322210 011111112223566777777543 4677887776532
Q ss_pred eeccc----ccccceeEEEecCCCcEEEEeecC----cEEEEEEccCCCcceeeeecc-ccc-CeeeEEEecCceEEEcc
Q 007229 530 LNNML----FHTARINCLAWSPSSTMVATGSID----TCVIIYEIGKPASSRITIKNA-HLG-GVYGVAFMDDFNVVSSG 599 (612)
Q Consensus 530 ~~~~~----~~~~~i~~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~-h~~-~v~~~~~~~~~~l~s~~ 599 (612)
..... .....-..+. -++++.+.++.+ ..+.+||..+..+..+..... ... ...+++..+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 11100 0111111122 266777777655 458899998733222221100 111 11122222677788888
Q ss_pred CC
Q 007229 600 ED 601 (612)
Q Consensus 600 ~d 601 (612)
.+
T Consensus 386 ~~ 387 (470)
T PLN02193 386 EI 387 (470)
T ss_pred cc
Confidence 53
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.61 E-value=9.7 Score=39.01 Aligned_cols=334 Identities=17% Similarity=0.132 Sum_probs=162.9
Q ss_pred eeEEEEccCCCEEEEecC----------CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCe--EEEeec
Q 007229 21 GILISGNPKTDTILYCNG----------RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS--VRIWGT 88 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~----------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~--i~iwd~ 88 (612)
+....++|++..+++... ..+.+-|... .....+...+..+.|+|||+.++..+.++. ..+|-+
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~ 90 (620)
T COG1506 15 VSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLV 90 (620)
T ss_pred ccCcccCCCCceeEEeeccccccccccccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEE
Confidence 344567777777777653 2333333332 224457788899999999999998874333 344433
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe--
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC-- 166 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-- 166 (612)
.... ....+...+....|+|++..++....... ....+. . .+.++.-.....+
T Consensus 91 ~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------~~~~~~-------------~-~~~~~~~~~~~~~~g 145 (620)
T COG1506 91 DVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGA-------SKRDGG-------------D-HLFVDRLPVWFDGRG 145 (620)
T ss_pred ecCC----ceeeeecccccceeCCCCCeEEEEecccc-------cccCCc-------------e-eeeecccceeecCCC
Confidence 3221 34556678889999999999887322210 000111 0 0111111011111
Q ss_pred ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCc-------EEEEecCCCCeeeeeeccCCccccEE
Q 007229 167 GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRK-------GLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+....+.+.|... ...........+....++++++.++....+.. ..++...++...... .....+.
T Consensus 146 ~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 219 (620)
T COG1506 146 GERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLT----PGEGSIS 219 (620)
T ss_pred CcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEc----CCCceee
Confidence 1234455555554 33334445667777778877777776655442 233433344444444 4555688
Q ss_pred EEEEecCCCEEEEEeCCCc--------EEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEc-CCEEE
Q 007229 240 AVSWSPDGKKVLTVSADKS--------AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSL-GGIIS 309 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~--------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~ 309 (612)
.+.|.++++.++..+.... +.+++. +.++................+... .. ...++.+.. .+...
T Consensus 220 ~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 294 (620)
T COG1506 220 KLAFDADGKSIALLGTESDRGLAEGDFILLLDG----ELGEVDGDLSSGDDTRGAWAVEGG-LDGDGLLFIATDGGGSSP 294 (620)
T ss_pred eeeeCCCCCeeEEeccCCccCccccceEEEEec----cccccceeeccCCcccCcHHhccc-cCCCcEEEEEecCCCceE
Confidence 8899999986655443321 222221 112111100000000000001111 23 333444444 57777
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE-Eec---CCcEEEEEcCCceeeeeceecccceEEEEe-eccEEE
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS-SSY---DGAIIKWIRGVGYSSKLEKKYDARIKCLAA-VEEVIF 384 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~---dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~~~~l~ 384 (612)
++.............+....+....+ + +..++. -+. -..+.+++. +.................+ ..+.+-
T Consensus 295 l~~~~~~~~~~~~~~~~~~~v~~f~~-~--~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~ 369 (620)
T COG1506 295 LFRVDDLGGGVEGLSGDDGGVPGFDV-D--GRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVT 369 (620)
T ss_pred EEEEeccCCceeeecCCCceEEEEee-C--CCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEE
Confidence 77755444444444444445555544 2 343333 222 234666654 2222222223333333333 445555
Q ss_pred EecCCC-eEEEEecCC
Q 007229 385 TAGFDN-KVWRVPLCE 399 (612)
Q Consensus 385 ~~~~~~-~i~~~~~~~ 399 (612)
..+.|| ++.-|-+..
T Consensus 370 ~~~~dG~~i~~~l~~P 385 (620)
T COG1506 370 YKSNDGETIHGWLYKP 385 (620)
T ss_pred EEcCCCCEEEEEEecC
Confidence 556666 666665543
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.53 E-value=2.1 Score=45.57 Aligned_cols=151 Identities=9% Similarity=0.050 Sum_probs=101.4
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEEC--------CCCCEEEEeeCcCeEEEeecCCCce
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYS--------PNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s--------~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
+.+-+-|.=...-...|+.+++|+.+++.....+.+-++.|..|..- |.=++|..-..--.|.|+-+.-.+.
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~ 161 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEF 161 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccc
Confidence 45556666666677779999999999988888888888888887643 3334444444445677765542221
Q ss_pred --ee------eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--------CCce----------------ee
Q 007229 94 --LK------NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--------SGTT----------------VG 141 (612)
Q Consensus 94 --~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--------~~~~----------------~~ 141 (612)
.. ..+......|.++....+|+.+.+|-+++ +|..- ..++ +.
T Consensus 162 ~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~------lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 162 TGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGN------LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred cCcccccccceeeecCCceEEEEEeccCCcEEEeecCCC------EEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 01 11223355788999888898887776664 43221 1111 11
Q ss_pred eec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC
Q 007229 142 DFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179 (612)
Q Consensus 142 ~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 179 (612)
.+. .+.++|..++.....+ ++.+-++.|+|.+||+..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccC
Confidence 233 5678999999998877 799999999999999876
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.2 Score=39.51 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=93.4
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccC----ceE-EEEEcCCCcEEEEEcCCCeEEEE-e
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG----AIT-VIQYSPDVSMFASADGNREAIVW-D 522 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~----~i~-~~~~s~~~~~l~~~~~d~~i~iw-d 522 (612)
....+..+-..|||+.+.+-+. .++.++++.+..+...+......+ .|+ ++..-..|.-|..++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3456778889999999888665 679999988766532322222111 122 22223456678888899998887 5
Q ss_pred cCCccee-e---ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 523 RVSKEVK-L---NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 523 ~~~~~~~-~---~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
....... . ..+.-...++..+.--.+.+-+++-+..|++.++.... . +. ..+..-...+..+++| ...+|++
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~-~~-lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-E-KL-LLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc-C-cc-eehhhhhcCcceeeeCcccchhee
Confidence 4433221 0 11111223344443333445677777888888877655 2 22 2222233366778899 6667766
Q ss_pred ccCCCeEEEEEecc
Q 007229 598 SGEDACIRVWRLAT 611 (612)
Q Consensus 598 ~~~d~~i~~w~~~~ 611 (612)
- +.|.++++.+++
T Consensus 375 e-~~gki~~~~l~N 387 (733)
T COG4590 375 E-DQGKIRLAQLEN 387 (733)
T ss_pred e-cCCceEEEEecC
Confidence 4 456799988875
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.45 E-value=6.3 Score=36.39 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=86.0
Q ss_pred CCceeEEEEcc-CCCEEEEecCCE------EEEEeCCC--C--ceee-----EeccCCC--------ceEEEEECCCCCE
Q 007229 18 RGRGILISGNP-KTDTILYCNGRS------VLIRYLDK--P--LHVE-----FYGEHGY--------PVTVARYSPNGEW 73 (612)
Q Consensus 18 ~~~v~~~~~s~-d~~~l~~~~~~~------i~i~~~~~--~--~~~~-----~~~~h~~--------~v~~~~~s~d~~~ 73 (612)
-+..+.+.+.| ++++++....+. ++..++.. + ..+. .+..-.+ ...++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 46789999994 666666665555 55555443 1 1111 1111111 4457888889999
Q ss_pred EEEeeCc------CeEEEeecCCCceeeee-----e---------eecCCCeEEEEECCCCCEEEEEeCCC-----Ce--
Q 007229 74 IASADVS------GSVRIWGTHNGFVLKNE-----F---------KVLSGRIDDLQWSPDGLRIVACGDGK-----GK-- 126 (612)
Q Consensus 74 las~~~d------~~i~iwd~~~~~~~~~~-----~---------~~~~~~i~~~~~s~~~~~l~~~~~~~-----~~-- 126 (612)
+++.-.+ ..|..++.. ++.+... + ...+....+|+++|||+.|+++.+.. ..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 9988777 788888876 4321111 1 12345789999999999777765432 11
Q ss_pred ----eeEEEEEecC---Cceeeee----cc-----CCceEEEEEEcCCCCE
Q 007229 127 ----SFVRAFMWDS---GTTVGDF----DG-----HSRRVLSCEFKPTRPF 161 (612)
Q Consensus 127 ----~~i~i~~~~~---~~~~~~~----~~-----~~~~v~~~~~~~~~~~ 161 (612)
..++++.++. ++....+ .. ....+..+.+.+++++
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 1256666663 2222222 22 3567788888888874
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=93.37 E-value=6.9 Score=36.55 Aligned_cols=61 Identities=7% Similarity=-0.046 Sum_probs=31.9
Q ss_pred CcEEEEEecC-------CcEEEEEcCCceeeeeceec---cc---ceEEEEeeccEEEEecCCC-----eEEEEecCCC
Q 007229 340 QQTILSSSYD-------GAIIKWIRGVGYSSKLEKKY---DA---RIKCLAAVEEVIFTAGFDN-----KVWRVPLCEG 400 (612)
Q Consensus 340 ~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~---~~---~i~~~~~~~~~l~~~~~~~-----~i~~~~~~~~ 400 (612)
+.+++.|+.+ ..+.+||..+.+-....... .. ....+...+..++.|+.++ .+.++|..+.
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 5566666653 35778888876554432211 11 1223344666666766532 4556665543
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.8 Score=31.74 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee------cccccccceeEEEecC-----CCcEEEEeecCcEEEEEE
Q 007229 497 ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN------NMLFHTARINCLAWSP-----SSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 497 i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~~i~~~~~s~-----~~~~l~s~~~d~~i~iwd 565 (612)
|..-.|......|++++.-|+|.|++......... .+..-...|++++-.+ +...|+.|+... +..||
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~-llaYD 79 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTS-LLAYD 79 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccce-EEEEE
Q ss_pred ccCCCcceeeeecccccCeeeEEEe----cCceEEEccCCCeEEEEEeccC
Q 007229 566 IGKPASSRITIKNAHLGGVYGVAFM----DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 566 ~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
+.. ..-...+.-.+.|.++.+- ...-|+..|.+..|.-+|.+-+
T Consensus 80 V~~---N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 80 VEN---NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred ccc---CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.22 E-value=5.6 Score=35.11 Aligned_cols=210 Identities=11% Similarity=0.117 Sum_probs=119.3
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecC------CCceeeeeeee-----cCCCeEEEEECCCCCE------------E
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTH------NGFVLKNEFKV-----LSGRIDDLQWSPDGLR------------I 117 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~------~~~~~~~~~~~-----~~~~i~~~~~s~~~~~------------l 117 (612)
.-..|+|+|.+.+-++....+...+||.. ....+...+.. .....+.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34679999999888888888899999997 22223333332 2235677777654333 4
Q ss_pred EEEeCCCCeeeEEEEEecC--Cc-----eeeeec-cCCceE-EEEEEc--CCCCEEEEEeecCCeEEEEeCCCCeeee--
Q 007229 118 VACGDGKGKSFVRAFMWDS--GT-----TVGDFD-GHSRRV-LSCEFK--PTRPFRIATCGEDFLVNFYEGPPFKFKL-- 184 (612)
Q Consensus 118 ~~~~~~~~~~~i~i~~~~~--~~-----~~~~~~-~~~~~v-~~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~~~-- 184 (612)
+.+++++ +|.-|.. +. ....+. .....| ..+++- ..+.++.++--..++|.++|-.-.+...
T Consensus 104 if~tEdG-----TisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 104 LFVTEDG-----TLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred EEEeCCc-----eEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 5566666 3555551 11 111222 112333 334444 3456666776778999999854332211
Q ss_pred cccccc-----cc-----------eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec---
Q 007229 185 SHREHS-----NF-----------VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--- 245 (612)
Q Consensus 185 ~~~~~~-----~~-----------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--- 245 (612)
.+.... .+ |+-..-.++.+.=+.+..-|.|-+||+ .|..++++... +.-...+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~-g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS-GRLNAPWGLAIAPESF 256 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC-CcccCCceeeeChhhh
Confidence 011100 00 111111122222222333478999995 68888888432 4445566777755
Q ss_pred ---CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 246 ---DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 246 ---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
.+.+|+---.||+|..||. .+++.+-.+....
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~----~sG~~~g~L~~~~ 291 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDP----QSGAQLGQLLDPD 291 (336)
T ss_pred CCCCCCeEEeecCCceeEEecC----CCCceeeeecCCC
Confidence 4666776667999999998 7788777666543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.55 Score=27.16 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=24.3
Q ss_pred cCCCEEEEec--CCEEEEEeCCCCceeeEecc
Q 007229 28 PKTDTILYCN--GRSVLIRYLDKPLHVEFYGE 57 (612)
Q Consensus 28 ~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~ 57 (612)
||+++|.++. ++.|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6888888776 68999999998888776654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=93.03 E-value=6.5 Score=35.37 Aligned_cols=183 Identities=10% Similarity=0.066 Sum_probs=90.7
Q ss_pred cEEEEEcCCceeeeecee------cccceEEEEeec-------cEEE-EecCCCeEEEEecCCCCCCccceeccCCCcce
Q 007229 351 AIIKWIRGVGYSSKLEKK------YDARIKCLAAVE-------EVIF-TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLD 416 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~~------~~~~i~~~~~~~-------~~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 416 (612)
.|.+||+.+++......- ..+.+..+.++. .+++ +=...+.|.++|+.+++............+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 455666666665443221 355667777733 2333 33444588889988876431111111111111
Q ss_pred eeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCccc-----cc--
Q 007229 417 LSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTL-----TE-- 486 (612)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~-----~~-- 486 (612)
..+... +. .+.....+..++.+| ++++|....-.+ -++|.+.+..+ ..
T Consensus 115 ~~~~i~------------------g~---~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~ 172 (287)
T PF03022_consen 115 GPFTIG------------------GE---SFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ 172 (287)
T ss_dssp EEEEET------------------TE---EEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH
T ss_pred cceecc------------------Cc---eEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccc
Confidence 111111 11 112223367777766 778888766543 34454433211 00
Q ss_pred ----ceeecccc-CceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc-----eeeecccccccceeEEEecC--CCcEEEE
Q 007229 487 ----EMVLEKHR-GAITVIQYSPDVSMFASADGNREAIVWDRVSKE-----VKLNNMLFHTARINCLAWSP--SSTMVAT 554 (612)
Q Consensus 487 ----~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~s~--~~~~l~s 554 (612)
....-+.. .....++++++|.+..+--..+.|..|+..+.. .+...-...-..+..+.+.+ +|.+.+.
T Consensus 173 ~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 173 ALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp -HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred cccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 11111222 356778999999999999999999999988722 11111111123567788887 6665444
Q ss_pred e
Q 007229 555 G 555 (612)
Q Consensus 555 ~ 555 (612)
.
T Consensus 253 s 253 (287)
T PF03022_consen 253 S 253 (287)
T ss_dssp E
T ss_pred E
Confidence 4
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=11 Score=37.87 Aligned_cols=190 Identities=13% Similarity=0.031 Sum_probs=103.4
Q ss_pred ceeEEEEccCCCEEEEecC--CEEEEEeCCCCce-----eeEeccCCCceEEEEECCCCCEEEEeeC--cC--eEEEeec
Q 007229 20 RGILISGNPKTDTILYCNG--RSVLIRYLDKPLH-----VEFYGEHGYPVTVARYSPNGEWIASADV--SG--SVRIWGT 88 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~--~~i~i~~~~~~~~-----~~~~~~h~~~v~~~~~s~d~~~las~~~--d~--~i~iwd~ 88 (612)
.+.+.+.|+++..+|+..+ ..+++..+..+.. ...+. ....+.-.|.++| .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC
Confidence 6789999999999998873 3666666543332 12233 2347777888877 4444422 22 2555543
Q ss_pred CCCceeeeeeeecCC-CeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCc-eeee---eccCCceEEEEEEcCCCC
Q 007229 89 HNGFVLKNEFKVLSG-RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGT-TVGD---FDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~-~~~~---~~~~~~~v~~~~~~~~~~ 160 (612)
+++..........+ .|..+..|+||.+++...+..+...+.+-... .+. .+.. +......+.+++|..++.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~s 519 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQ 519 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCE
Confidence 44332111122333 79999999999998877653222123332222 332 1211 222233589999999997
Q ss_pred EEEEEee-cCCeEEEEe--CCCCeeeecccccccceEEEEECCCCC-eEEEEEcCCcE
Q 007229 161 FRIATCG-EDFLVNFYE--GPPFKFKLSHREHSNFVNCIRFSPDGS-KLISVSSDRKG 214 (612)
Q Consensus 161 ~~l~~~~-~d~~i~~wd--~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i 214 (612)
+++.+. .++...+|- +............-..+..++-..+.+ .++.+..++.|
T Consensus 520 -L~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 520 -LVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred -EEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 455443 333444554 332222222223445566677776655 34442555554
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=11 Score=37.61 Aligned_cols=195 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC--eEEEeecCCCce---
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG--SVRIWGTHNGFV--- 93 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~--~i~iwd~~~~~~--- 93 (612)
..+.+.+.|+|++.+|+..+..-.+|-...+...+.+.. ....+.-.|.++| ++-+...+. .|....-.....
T Consensus 343 ~~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~-g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 343 LGPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTS-GSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred ccccceeecCCCceEEEecCCCcEEEEecCCCcceeeec-CCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Q ss_pred ----eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeeeccCC----ceEEEEEEcCCCCEE
Q 007229 94 ----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDFDGHS----RRVLSCEFKPTRPFR 162 (612)
Q Consensus 94 ----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~~~~~----~~v~~~~~~~~~~~~ 162 (612)
....-......|..+..|+||.+++.....++...+.|--.. .|.+...-.... ..+.++.|..++...
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~ 500 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVV 500 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEE
Q ss_pred EEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 163 IATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
+.+...++...++-+.-..-......+-..+..|+-..+.+.|+. ..|+.+..
T Consensus 501 V~~~~~~~~~~~~~v~v~~g~~~~l~~~~~~~~iaag~~~~~i~~-~sd~~v~~ 553 (573)
T PRK13614 501 VTKASATSNVVPELLSVDAGQPQQLAPWTGLTSITVGNGPEEVYG-QSDGGIFQ 553 (573)
T ss_pred EEeccCCCcceEEEEEeCCCCcccCCCcCCeEEEeecCCccceEE-EcCCCEEe
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=92.85 E-value=5.8 Score=34.29 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=78.0
Q ss_pred EEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC---Cceeeee---ccCCceEEEEEEc
Q 007229 83 VRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS---GTTVGDF---DGHSRRVLSCEFK 156 (612)
Q Consensus 83 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~---~~~~~~~---~~~~~~v~~~~~~ 156 (612)
=.+||+.+++. .............-+|.+||+.|.++|...+...++++.-.. ....... -.....--....-
T Consensus 48 s~~yD~~tn~~-rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTF-RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcE-EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 45899998863 211112222334446889999999999876655566655432 1111111 1122333445567
Q ss_pred CCCCEEEEEeecC-CeEEEEeCCCC-eeeec---cc-----ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 157 PTRPFRIATCGED-FLVNFYEGPPF-KFKLS---HR-----EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 157 ~~~~~~l~~~~~d-~~i~~wd~~~~-~~~~~---~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
|||+. ++.|+.. .+..+|..... ..... +. ....----+...|+|+.++.+..+ -.|||..+.+.+.
T Consensus 127 ~DG~v-lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 127 PDGRV-LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCE-EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence 89984 6665554 45555554211 11111 11 011112245667999988877654 5677988887777
Q ss_pred eee
Q 007229 227 EFS 229 (612)
Q Consensus 227 ~~~ 229 (612)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 763
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.78 E-value=4.8 Score=33.14 Aligned_cols=157 Identities=12% Similarity=0.044 Sum_probs=81.8
Q ss_pred CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccc
Q 007229 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF 192 (612)
Q Consensus 113 ~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 192 (612)
+|.++.+.|.-+.. .|++++..+++.+.+-+-....+..=-...-+.++-+---.+|.-..+|..+.+++..+. .++.
T Consensus 55 ~g~i~esTG~yg~S-~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFS-KIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccc-eeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence 45566666655433 677788878887766443322222211122233334444457778888888887766543 2233
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc---EEEEEEecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS---IYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
=..+ ..|++.|+.+....+++.-|.++-....++... ....+ +..+.|- +|...+-.=.+..|...+. +
T Consensus 133 GWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p----~ 204 (262)
T COG3823 133 GWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP----D 204 (262)
T ss_pred ceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcC----C
Confidence 3343 345666766665666777777665554444221 11122 2233343 4544443333444555555 5
Q ss_pred CCeeEeeeec
Q 007229 270 GGRVIKTFAS 279 (612)
Q Consensus 270 ~~~~~~~~~~ 279 (612)
+++.+..+..
T Consensus 205 sGrV~~widl 214 (262)
T COG3823 205 SGRVVAWIDL 214 (262)
T ss_pred CCcEEEEEEc
Confidence 6666555543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=92.57 E-value=8.6 Score=35.56 Aligned_cols=97 Identities=10% Similarity=0.141 Sum_probs=50.1
Q ss_pred CCCeEEEEec-----CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC----eEEEEecCCcceeee
Q 007229 461 DGSEAIVGGQ-----NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR----EAIVWDRVSKEVKLN 531 (612)
Q Consensus 461 ~~~~l~~~~~-----dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~----~i~iwd~~~~~~~~~ 531 (612)
++++.+.|+. ...+..||+.+.+......+... .+....+...++++.+.|+.++ .+..||..+.+-...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~ 201 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV 201 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC
Confidence 4556666653 23688899988776433322211 1222233345677888887664 356788877653211
Q ss_pred ccccc-ccce---eEE-EecCCCcEEEEeecC
Q 007229 532 NMLFH-TARI---NCL-AWSPSSTMVATGSID 558 (612)
Q Consensus 532 ~~~~~-~~~i---~~~-~~s~~~~~l~s~~~d 558 (612)
..... ..+. ... ....++++++.|+.+
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 11000 0111 111 122367788888865
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.91 Score=38.70 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=40.1
Q ss_pred ECCCCCEEEEeeCcCeEEEeecCCCceeeee------ee-------ecCCCeEEEEECCCCCEEEEEeCC
Q 007229 67 YSPNGEWIASADVSGSVRIWGTHNGFVLKNE------FK-------VLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 67 ~s~d~~~las~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
+..++++|+..+.+|.+++||+.+++.+... +. .....|..+.++.+|.-+++-+++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng 87 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG 87 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 5567889999999999999999998753322 22 234566777777777666665554
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=92.52 E-value=11 Score=36.56 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=25.2
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999998889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.50 E-value=8.7 Score=35.49 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=82.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCC------eeeEEEEEecCC--cee-----eeeccCCc--------eEEEEEEcCCCC
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKG------KSFVRAFMWDSG--TTV-----GDFDGHSR--------RVLSCEFKPTRP 160 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~------~~~i~i~~~~~~--~~~-----~~~~~~~~--------~v~~~~~~~~~~ 160 (612)
-+.+..+.+.|++..+++.++++. .....+-. +.+ ..+ ..+....+ ...+|++.+++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDY-DQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeec-cCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788888876666777777664 11111111 111 011 11111111 345788877777
Q ss_pred EEEEEeecC------CeEEEEeCCCCeeeecc---------------cccccceEEEEECCCCCeEEEEEcC-----C--
Q 007229 161 FRIATCGED------FLVNFYEGPPFKFKLSH---------------REHSNFVNCIRFSPDGSKLISVSSD-----R-- 212 (612)
Q Consensus 161 ~~l~~~~~d------~~i~~wd~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~d-----g-- 212 (612)
++++.-.+ ..|..++.. ++....+ ...+....+|+++|+|+.|+++.+. +
T Consensus 98 -~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 -FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred -EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 47777667 788888866 4443332 1234568899999999977766442 2
Q ss_pred c-------EEE--EecCC-CCeeeeeeccCC------ccccEEEEEEecCCCEEEE
Q 007229 213 K-------GLI--YDGKS-GEKIGEFSSEDG------HHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 213 ~-------i~v--wd~~~-~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~ 252 (612)
. +++ ||..+ ++....+..... ....+..+.+.+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 444 45444 322222211111 4567888888888886554
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=92.37 E-value=22 Score=39.73 Aligned_cols=158 Identities=14% Similarity=0.144 Sum_probs=86.0
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
+.|...++.+.-++++.. +=. .|+.++.||.........-.....++..+.-.-||+..+ .++. .+-|+..+.
T Consensus 359 kaH~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~-~l~nLSs~~ 431 (1774)
T PF11725_consen 359 KAHIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDD-TLVNLSSGQ 431 (1774)
T ss_pred HHHHHHhhccccCCCCCe-EEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCC-ceeecCCCC
Confidence 347777888888888773 221 356677777665543311111223344444444554332 2221 133444443
Q ss_pred eeeeeeccCCccccEEEEEEecCCCE-EEEEeCCCcEEEEEeecCCCCCee--EeeeeccCccccceeeeeeeccCCEEE
Q 007229 224 KIGEFSSEDGHHGSIYAVSWSPDGKK-VLTVSADKSAKVWEILEDGSGGRV--IKTFASSTSNAVEDMLVGCLWQNDHLI 300 (612)
Q Consensus 224 ~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (612)
... ..-..+.+...+++++. ++++.....+.+|++......... -..++...... ....+...+++|+
T Consensus 432 ~~~------~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a---~A~~VgLs~drLF 502 (1774)
T PF11725_consen 432 MSE------AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKA---QAQSVGLSNDRLF 502 (1774)
T ss_pred cch------hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCch---hhhheeecCCeEE
Confidence 222 22345778888899987 444444456699998543222222 22333332111 4444555678999
Q ss_pred EEEcCCEEEEEEcCCCC
Q 007229 301 TVSLGGIISIFSASNLD 317 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~ 317 (612)
++..+|.++.-++....
T Consensus 503 vADseGkLYsa~l~~~~ 519 (1774)
T PF11725_consen 503 VADSEGKLYSADLPAAQ 519 (1774)
T ss_pred EEeCCCCEEeccccccc
Confidence 99999999988866543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=92.24 E-value=8 Score=34.44 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=55.7
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee------CcCeEEEeecCCCceeeeeeee-----cCCCeEE
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD------VSGSVRIWGTHNGFVLKNEFKV-----LSGRIDD 107 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~------~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~ 107 (612)
..|++||.++.+=...-.+-.+.|+++.|..+.++++.|. ....+..||..+..- ..+.. -.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccccCCCcEEE
Confidence 4899999998776665556788999999998888888874 456789999988752 22332 2467888
Q ss_pred EEECC-CCCEEE
Q 007229 108 LQWSP-DGLRIV 118 (612)
Q Consensus 108 ~~~s~-~~~~l~ 118 (612)
+.+.. |+..+.
T Consensus 94 ~~~~~~d~~~~~ 105 (281)
T PF12768_consen 94 LTFISNDGSNFW 105 (281)
T ss_pred EEeeccCCceEE
Confidence 87743 444444
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.038 Score=50.83 Aligned_cols=135 Identities=12% Similarity=0.130 Sum_probs=91.7
Q ss_pred cceeeecCCCCcEEEEEeeccEEEee-cccceeeecccceEEEEEEccCCCeEEE-EecCCeEEEEEccCcccccceeec
Q 007229 414 PLDLSLALSSPELALVSTESGVILLD-SLKVMSKIDLGFTVTACAIAPDGSEAIV-GGQNGKLHIYSISGNTLTEEMVLE 491 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~ 491 (612)
+....+.+.+..+++.....-+..+| .++...+...+.....+++..++..+++ +-..+.+++||+.+..-.....-.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 44455566666666666666566666 4455555556666777888887766554 556789999999865432111111
Q ss_pred cccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcE
Q 007229 492 KHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTM 551 (612)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 551 (612)
.|.... +.|++....++.+...|.+.|++..+.+.. .....|..+++++++.+.+..
T Consensus 117 ~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 117 TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred cchHHH--HhhccCCccccccccccceEEEeccchhhh-hhhcccccceeEEEeccccee
Confidence 222222 789999999999999999999998887765 334448999999999987653
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.025 Score=51.92 Aligned_cols=146 Identities=10% Similarity=0.101 Sum_probs=97.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK 183 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 183 (612)
......|-|.+.-++.++.+. .+..+|.......-...++....++|..+++.+++.+-..+.+.+||+.+....
T Consensus 36 ~pi~~~w~~e~~nlavaca~t-----iv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANT-----IVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ccceeeEecCCCceehhhhhh-----HHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 444567778777777766654 234444333222222344556678888888867777888899999998765432
Q ss_pred ec-cc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEE
Q 007229 184 LS-HR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260 (612)
Q Consensus 184 ~~-~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 260 (612)
.. +. .|.... +.|++.+..++.+...|.+.+++..+.+.+... ..|...++++++.+.+. .+.++.|..+.
T Consensus 111 qLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~---Gkh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 111 QLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM---GKHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred HHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh---cccccceeEEEecccce-eeecCcHHHHH
Confidence 22 11 122222 789998889999989999999998887777766 23999999999998775 44454554443
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.81 Score=25.95 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=21.6
Q ss_pred eccCCCceEEEEECCCCCEEEEee-Cc--CeEEEe
Q 007229 55 YGEHGYPVTVARYSPNGEWIASAD-VS--GSVRIW 86 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~-~d--~~i~iw 86 (612)
+......-...+|||||++|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445566778999999999988765 34 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.86 E-value=7.9 Score=33.54 Aligned_cols=135 Identities=9% Similarity=-0.048 Sum_probs=78.4
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeec
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 532 (612)
...++..|||..-++.-.+..|-..|...+.....-........-+.+--+|.|+.-++....+.+..+|-....-..-.
T Consensus 191 pyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred CcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeee
Confidence 44567777777777666666666666655532111112221233455566778888888777888888887665544334
Q ss_pred ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe
Q 007229 533 MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 590 (612)
+.+....-.++.....++.-.+-...+.|.-+|-++ ..+.++....-....+...
T Consensus 271 LPgs~arpys~rVD~~grVW~sea~agai~rfdpet---a~ftv~p~pr~n~gn~ql~ 325 (353)
T COG4257 271 LPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET---ARFTVLPIPRPNSGNIQLD 325 (353)
T ss_pred CCCCCCCcceeeeccCCcEEeeccccCceeecCccc---ceEEEecCCCCCCCceecc
Confidence 454555566677766666555555556677777766 3444444333333344443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.76 E-value=4.9 Score=38.56 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=37.0
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec-----cccCceEEEEEcCCC
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-----KHRGAITVIQYSPDV 506 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~ 506 (612)
..+.|+|.||+++|++--..|.|++++..++.......+. ...+....|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4788999999987776555699999986554321111111 124668899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.73 E-value=9 Score=33.93 Aligned_cols=87 Identities=13% Similarity=0.188 Sum_probs=52.1
Q ss_pred cCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC------CCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP------DVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 460 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
++++.=+.|..-|.|-+||+...-+ ....-.+.-..-..|+..| .+.+|+---.||+|..+|..+++.+-...
T Consensus 210 ~~~~d~v~G~G~G~VdvFd~~G~l~-~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 210 ADRNDEVAGAGLGYVNVFTLNGQLL-RRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CcccccccCCCcceEEEEcCCCcEE-EEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 3443344455567899999875443 1122223333456677655 56788877789999999999888653332
Q ss_pred cccc-----cceeEEEecC
Q 007229 534 LFHT-----ARINCLAWSP 547 (612)
Q Consensus 534 ~~~~-----~~i~~~~~s~ 547 (612)
.... .....|.|-.
T Consensus 289 ~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 289 DPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEecCeEEeeeCC
Confidence 2222 2245666654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.71 E-value=4.2 Score=43.41 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=87.6
Q ss_pred EEEEECCC-CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEE--------ECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 63 TVARYSPN-GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ--------WSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 63 ~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
+.+-+-|. ++.-+| .|..+.+|+++++.. ...+.+-...|..+. |-|.=++|+..+.......+-|..
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 33444443 443444 477899999998653 334555555555554 344555665555443221111111
Q ss_pred ecCCcee------eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC----CCC----ee----------------e
Q 007229 134 WDSGTTV------GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG----PPF----KF----------------K 183 (612)
Q Consensus 134 ~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~----~~~----~~----------------~ 183 (612)
-+..... ..+....-.|.++....+|+ +..++.|| .+|.+ ..+ ++ +
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCc--EEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 1111111 22233466789999888886 55555666 44431 110 00 1
Q ss_pred eccc-ccccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 184 LSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 184 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
..+. .+.++|..++....-+.+.+-++.|+|.+||+..
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1123 5677999999998888899999999999999876
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.98 Score=26.07 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=25.4
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccc
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE 188 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 188 (612)
|++++++++...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56777777777889999999998887776554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.50 E-value=1 Score=41.53 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=90.4
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceee-Ee-ccCC----CceE-EEEECCCCCEEEEeeCcCeEEEe-ecCC
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVE-FY-GEHG----YPVT-VARYSPNGEWIASADVSGSVRIW-GTHN 90 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~-~~-~~h~----~~v~-~~~~s~d~~~las~~~d~~i~iw-d~~~ 90 (612)
+.+..+-+.|||+++..-+++.+.|+++.+..... .+ .... ..|+ ++..-..|.-|..++.||-|.-| |+..
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 46778889999999999999999999988654321 11 1111 2233 22233456667777788888777 3333
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
+.. .|-..+....+.|....++.... +.+ -+++-+..|
T Consensus 301 ~~~------p~l~h~R~f~l~pa~~~~l~pe~-----------------------------------~rk-gF~~l~~~G 338 (733)
T COG4590 301 DGQ------PHLNHIRNFKLAPAEVQFLLPET-----------------------------------NRK-GFYSLYRNG 338 (733)
T ss_pred CCC------CcceeeeccccCcccceeecccc-----------------------------------ccc-eEEEEcCCC
Confidence 221 12222333333333222221111 111 244555555
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
++.++.....+.+..-+ --..+.-+++||++.+|++- ..|.++++.+++..+.
T Consensus 339 ~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 339 TLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred ceeeeecccCcceehhh-hhcCcceeeeCcccchheee-cCCceEEEEecCCCCC
Confidence 56555433333222211 22356678999999999864 4578999988765543
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.22 E-value=22 Score=37.53 Aligned_cols=197 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEee--------------cccceeeecccceEEEEEEc------cCCCeEEEEecCC
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLD--------------SLKVMSKIDLGFTVTACAIA------PDGSEAIVGGQNG 472 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~~s------~~~~~l~~~~~dg 472 (612)
+....+-...+..+-+..-...-..|. .......+....+|..++|. .....++..-...
T Consensus 28 ~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~ 107 (765)
T PF10214_consen 28 PILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTET 107 (765)
T ss_pred EEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEEEEcCC
Q ss_pred eEEEEE----------------ccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEec----CCcceeee
Q 007229 473 KLHIYS----------------ISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDR----VSKEVKLN 531 (612)
Q Consensus 473 ~v~i~d----------------~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~----~~~~~~~~ 531 (612)
.+.|+. +.-..+..+..-.....+..+++|+| +.+.||..+..|...||++ ........
T Consensus 108 st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~ 187 (765)
T PF10214_consen 108 STTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR 187 (765)
T ss_pred EEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee
Q ss_pred cccccccce------e----EEEecCCCcEEEEeecCcEEEEEEccCCCccee-eeecccccCeeeEEEe-cCceEEEcc
Q 007229 532 NMLFHTARI------N----CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRI-TIKNAHLGGVYGVAFM-DDFNVVSSG 599 (612)
Q Consensus 532 ~~~~~~~~i------~----~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~-~~~~l~s~~ 599 (612)
....+.+.+ . .+.|.++-+.|+.++... +.++|+++.. ..- .........|..+.-+ .+...+-.-
T Consensus 188 ~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~-~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL 265 (765)
T PF10214_consen 188 LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-LMLIDFESNW-QTEYLVTAKTWSWILDVKRSPDNPSHVFIL 265 (765)
T ss_pred eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc-eEEEECCCCC-ccchhccCCChhheeeEEecCCccceEEEE
Q ss_pred CCCeEEEEEecc
Q 007229 600 EDACIRVWRLAT 611 (612)
Q Consensus 600 ~d~~i~~w~~~~ 611 (612)
....|...++.+
T Consensus 266 Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 266 TSKEIIWLDVKS 277 (765)
T ss_pred ecCeEEEEEccC
|
These proteins are found in fungi. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.15 E-value=15 Score=35.26 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=55.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK 183 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 183 (612)
.|..+..++.|..++-.|.++ .+.++.-....+-..++.....|+|=.|.-+.+ +.+.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G---i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~--~ftss---------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG---LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER--FFTSS---------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCe---eEEEEchhhcCccceecCCCceEEEEeecccce--eeccC----------------
Confidence 466777788888888888777 222222111111122222222333333333322 22211
Q ss_pred ecccccccceEEEEECCCC---CeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 184 LSHREHSNFVNCIRFSPDG---SKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 184 ~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
..-.+..++|+|+. ..|..-+.|..+++||+.....+...
T Consensus 164 -----~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 -----TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred -----CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11235677888865 56777788999999999887766544
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=90.61 E-value=15 Score=34.43 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=62.0
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC------eEEEEecCCcceeeeccccc--------c
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR------EAIVWDRVSKEVKLNNMLFH--------T 537 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~--------~ 537 (612)
..+.+||..+++......+.. ...........++++.+.|+.+. .+..+++............. .
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPF-LGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECccCCC-CcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 468999998887644333321 11111122234677777776531 24455553322111111111 1
Q ss_pred cceeEEEecCCCcEEEEeecC----------------------cEEEEEEccCCCcceeeeecccccCeeeEEEe-cCce
Q 007229 538 ARINCLAWSPSSTMVATGSID----------------------TCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFN 594 (612)
Q Consensus 538 ~~i~~~~~s~~~~~l~s~~~d----------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 594 (612)
......+...++++.+.|+.+ ..+.+||.++..+..+..+.... -...+.. +++.
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~--~~~~~~~~~~~i 324 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL--AYGVSVSWNNGV 324 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--eeeEEEEcCCEE
Confidence 111111223477777888753 15778998874333333222111 1122333 7888
Q ss_pred EEEccCCC
Q 007229 595 VVSSGEDA 602 (612)
Q Consensus 595 l~s~~~d~ 602 (612)
++.||.+.
T Consensus 325 yv~GG~~~ 332 (346)
T TIGR03547 325 LLIGGENS 332 (346)
T ss_pred EEEeccCC
Confidence 88888653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.50 E-value=17 Score=35.00 Aligned_cols=105 Identities=9% Similarity=-0.003 Sum_probs=62.8
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCcee--eEe----c-cCCCceEEEEECCCC------CEEEEe--e-----
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHV--EFY----G-EHGYPVTVARYSPNG------EWIASA--D----- 78 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~--~~~----~-~h~~~v~~~~~s~d~------~~las~--~----- 78 (612)
....|+|.|||++|++-. .|.|++++..++... ..+ . ...+....|+++|+- ++|... .
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 567899999999888887 599999986654321 111 1 135778899999884 233332 1
Q ss_pred ---CcCeEEEeecCCC--ce--eeeeeeec----CCCeEEEEECCCCCEEEEEeCCC
Q 007229 79 ---VSGSVRIWGTHNG--FV--LKNEFKVL----SGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 79 ---~d~~i~iwd~~~~--~~--~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
....|.-|.+... .. ....+... ...-..|+|.|||+++++.|+.+
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 1234555555421 10 11122211 11245678999999888877763
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.45 E-value=1.5 Score=24.76 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=22.8
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecC--CeEEEE
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGED--FLVNFY 175 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~w 175 (612)
+......-....|+|||+.++.+...+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455677889999999877777777 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.43 E-value=11 Score=32.69 Aligned_cols=237 Identities=9% Similarity=-0.012 Sum_probs=146.6
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
-+....++-+|||..-..+. .+.|--.|..+|+..+.-.+....-..|..-|||..-++-+.. -|.-.|-++.+....
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 34556788899998777766 5777778999999888777777777788999999766665433 566667766654322
Q ss_pred eee--ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 97 EFK--VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 97 ~~~--~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
.+. .-........|.+.|..-.++...- +. .+| ....+..+... ...-+.|+..|+|. +-++.-.+..|
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~---yG---rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnai 212 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGA---YG---RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAI 212 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecccc---ce---ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccce
Confidence 222 2345788899999998877765432 11 222 22334444332 34457788899998 46665566667
Q ss_pred EEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 173 NFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 173 ~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
-.-|...+..... -......-..+--+|.|..-++....+.+..+|..... ..+...+ +....-.++.....++.-
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLP-gs~arpys~rVD~~grVW 290 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLP-GSKARPYSMRVDRHGRVW 290 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCC-CCCCCcceeeeccCCcEE
Confidence 6667655532211 11212334455556777777776667888888876554 3333222 444555666666666554
Q ss_pred EEEeCCCcEEEEEe
Q 007229 251 LTVSADKSAKVWEI 264 (612)
Q Consensus 251 ~~~~~dg~i~iw~~ 264 (612)
++--..|.|.-+|.
T Consensus 291 ~sea~agai~rfdp 304 (353)
T COG4257 291 LSEADAGAIGRFDP 304 (353)
T ss_pred eeccccCceeecCc
Confidence 44444466666665
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=90.21 E-value=16 Score=34.20 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=27.4
Q ss_pred CcEEEEEecC-----------CcEEEEEcCCceeeeeceeccc---ceEEE-EeeccEEEEecCC
Q 007229 340 QQTILSSSYD-----------GAIIKWIRGVGYSSKLEKKYDA---RIKCL-AAVEEVIFTAGFD 389 (612)
Q Consensus 340 ~~~l~~~~~d-----------g~i~~wd~~~~~~~~~~~~~~~---~i~~~-~~~~~~l~~~~~~ 389 (612)
+.+.+.|+.+ ..+..||..+..-......... ....+ ...+...+.++.+
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 6777777753 2477788887766554321111 12223 2366666666654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=89.99 E-value=23 Score=35.69 Aligned_cols=166 Identities=12% Similarity=0.122 Sum_probs=93.1
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--eeeeeeecCCCeEEEEECC------CCCEEEEEeC-CCCeee
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWSP------DGLRIVACGD-GKGKSF 128 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~-~~~~~~ 128 (612)
-.+.|..+.|.++++.+++.-.+|.|.+||...+.. ....-..++..+.--.|-+ ...++++.+. .+....
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 367899999999999999999999999999943321 1111112222222113333 2345665555 444445
Q ss_pred EEEEEe-cCCceeeeec---cCCceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCeeeeccccc-----c-cceEEEE
Q 007229 129 VRAFMW-DSGTTVGDFD---GHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFKFKLSHREH-----S-NFVNCIR 197 (612)
Q Consensus 129 i~i~~~-~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----~-~~v~~~~ 197 (612)
.+++.. .....+..+. .+........|.- +|. |.-- .++.|.+|++...+...++.-. . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~--LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK--LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCE--EEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 666666 2333333332 2222222333332 343 3322 6789999999988876664321 1 2333433
Q ss_pred ECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 198 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.|..++++. +.++.|.+.|+.-...+.++
T Consensus 285 -~~s~nRvLL-s~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 285 -PPSPNRVLL-SVNNKIYLLDLKFESILSEF 313 (670)
T ss_pred -cCCCCeEEE-EcCCEEEEEeehhhhhhhhh
Confidence 234444444 34688999998876666665
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.72 E-value=26 Score=35.96 Aligned_cols=149 Identities=12% Similarity=0.117 Sum_probs=89.4
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-C----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee------CcCe
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-G----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD------VSGS 82 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~------~d~~ 82 (612)
+....+.+..+.|+|||+.++..+ + ..+++.+.. + .+..+...|....|+|+|+.++... .++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 444567888999999999999988 3 245555555 3 3455777888999999999888721 2222
Q ss_pred -------EEEeecCCC-cee----------eeeeeecCCCeEEEEECCCCCEEEEEeCCCC--e--eeEEEEEecCCcee
Q 007229 83 -------VRIWGTHNG-FVL----------KNEFKVLSGRIDDLQWSPDGLRIVACGDGKG--K--SFVRAFMWDSGTTV 140 (612)
Q Consensus 83 -------i~iwd~~~~-~~~----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~--~--~~i~i~~~~~~~~~ 140 (612)
+.+|....+ +.. ..........+....+.+++..++....... . ....++.. ....+
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 208 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGEL 208 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCce
Confidence 445544444 210 0112223345666677777777776654432 1 11222222 34444
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
..+......+..+.|.++++.+.+.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 209 ESLTPGEGSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred EEEcCCCceeeeeeeCCCCCeeEEeccC
Confidence 5555566668899999999854444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 612 | ||||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 5e-87 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 9e-64 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 8e-49 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 1e-13 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-21 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-06 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-19 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-06 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-19 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-06 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-19 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-06 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-19 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-19 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-19 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-06 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-19 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-06 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-19 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-06 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-19 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 4e-06 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-19 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-06 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-19 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-19 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-19 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-06 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-19 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 5e-19 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 7e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-18 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-13 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-12 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 6e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-12 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 6e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 7e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 9e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-07 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-07 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-07 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-07 | ||
| 3dxk_C | 372 | Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN | 3e-07 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 4e-07 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 6e-04 | ||
| 1k8k_C | 372 | Crystal Structure Of Arp23 COMPLEX Length = 372 | 5e-07 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 9e-07 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 6e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 6e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 4e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 7e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 4e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 7e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 4e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-05 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 5e-06 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 5e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 8e-06 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 8e-06 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 4e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-05 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-05 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 6e-05 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-04 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 2e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 6e-04 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 3e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 4e-04 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 4e-04 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-04 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 6e-04 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 8e-04 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 8e-04 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 8e-04 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 9e-04 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 9e-04 |
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 612 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.98 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.94 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.93 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.92 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.92 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.91 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.9 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.89 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.88 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.87 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.87 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.87 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.82 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.82 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.79 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.79 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.79 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.78 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.78 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.77 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.77 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.77 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.76 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.76 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.75 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.75 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.75 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.74 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.74 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.73 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.72 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.71 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.71 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.7 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.7 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.69 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.68 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.68 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.68 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.67 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.67 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.67 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.67 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.64 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.64 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.64 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.63 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.63 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.6 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.59 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.56 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.55 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.53 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.51 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.5 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.5 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.49 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.49 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.48 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.48 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.48 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.47 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.46 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 99.45 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.44 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.43 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.41 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.39 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.38 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.36 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.36 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.36 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.33 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.31 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.27 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.25 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.25 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.24 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.21 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.2 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.15 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.1 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 99.1 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.09 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 99.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.06 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.02 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.01 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.01 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.98 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.98 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.98 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.98 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.95 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.94 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.92 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.91 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.88 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.87 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.83 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.83 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.82 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.81 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.81 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.81 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.79 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.79 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.79 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.77 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.77 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.75 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.74 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.73 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.72 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.72 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.7 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.69 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.64 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.61 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.61 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.61 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.6 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.57 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.52 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.49 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.48 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.43 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.42 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.33 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.29 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.28 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.27 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.24 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.23 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.23 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.22 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.17 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.13 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.12 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.11 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.1 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 98.09 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.05 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.03 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.03 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.02 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.88 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.83 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.75 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.68 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.65 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.57 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.54 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.49 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.45 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.45 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.33 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.32 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.3 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.3 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.25 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.21 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.2 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.12 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.1 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.08 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.03 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.86 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.54 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 96.49 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.44 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.37 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.34 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.32 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.27 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.2 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.75 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.69 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.56 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.37 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 93.81 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 93.43 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.4 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 92.99 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.32 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 90.08 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 89.91 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 88.77 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 88.51 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 88.48 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 87.4 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 87.23 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 87.12 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 87.05 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 85.99 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 85.48 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 85.34 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.54 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 81.17 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 80.41 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-88 Score=681.88 Aligned_cols=595 Identities=32% Similarity=0.605 Sum_probs=516.3
Q ss_pred ce-eEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 2 AE-VHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 2 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
|+ +.++.+|++.|.++++.+.+++|||||++||+++++.|++|++.+++....+.+|...|++++|||||++||+|+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d 80 (611)
T 1nr0_A 1 MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 80 (611)
T ss_dssp -CCCEEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCccccccEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCC
Confidence 55 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCC
Q 007229 81 GSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 81 ~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
++|+|||+.+++. +...+.+|.+.|.+++|+||+++|++++.+... ...++.|+.++....+.+|...|.+++|+|++
T Consensus 81 ~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~-~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~ 159 (611)
T 1nr0_A 81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR 159 (611)
T ss_dssp SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTTCCBCBCCCCCSSCEEEEEECSSS
T ss_pred CCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc-eeEEEEeeCCCCcceecCCCCCceEEEECCCC
Confidence 9999999976543 455788899999999999999999999876432 45799999999999999999999999999999
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec----cCCcc
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS----EDGHH 235 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~ 235 (612)
+++|++|+.|++|++||..++++...+.+|...|.+++|+|++++|++++.|++|++||+.+++....+.. ..+|.
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 86799999999999999999999999999999999999999999999999999999999999988877621 11699
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
..|.+++|+|++++|++++.|++|++||+ .+++.+..+.... ........+.+.+..+++++.++.+++|+...
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNV----ATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET----TTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeC----CCCceeeeecCCC--CccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 99999999999999999999999999999 8888888876543 23344566667889999999999999999665
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec-eecccceEEEEe-eccEEEEecCCCeEE
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE-KKYDARIKCLAA-VEEVIFTAGFDNKVW 393 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~i~~~~~-~~~~l~~~~~~~~i~ 393 (612)
. .....+.+|...|.+++|++ +++++++++.|+.|++||+.++...... ..|...+.++++ .+..+++++.|+.++
T Consensus 314 ~-~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~ 391 (611)
T 1nr0_A 314 G-SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK 391 (611)
T ss_dssp T-EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred C-CcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceE
Confidence 4 35667889999999999984 3899999999999999999998876654 348899999999 667899999999999
Q ss_pred EEecCCCCCCcc--ceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC
Q 007229 394 RVPLCEGECGDA--EHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471 (612)
Q Consensus 394 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 471 (612)
+|+......... ........+..+++++++...+. ...+.+.+|+..+ +..+.+...+.+++|+|||++||+|+.|
T Consensus 392 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~-~~~~~v~~~~~~~-~~~~~~~~~v~~va~spdg~~lasgs~D 469 (611)
T 1nr0_A 392 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA-ACYKHIAIYSHGK-LTEVPISYNSSCVALSNDKQFVAVGGQD 469 (611)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE-EESSEEEEEETTE-EEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred EeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE-EeCceEEEEeCCc-eeeeecCCCceEEEEeCCCCEEEEeCCC
Confidence 999887654321 11234456678889888855544 4667788888665 6666788889999999999999999999
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCC-cceeee-cccccccceeEEEecCCC
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVS-KEVKLN-NMLFHTARINCLAWSPSS 549 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~-~~~~~~~~i~~~~~s~~~ 549 (612)
+.|++||+.++....... .+|...|++++|+||+++|++++.|++|++||+.+ ++.... .+.+|...|.+++|+|||
T Consensus 470 ~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg 548 (611)
T 1nr0_A 470 SKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548 (611)
T ss_dssp SEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred CeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCC
Confidence 999999998776433334 67999999999999999999999999999999988 554422 244599999999999999
Q ss_pred cEEEEeecCcEEEEEEccCCCccee-eeeccc-ccCeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 550 TMVATGSIDTCVIIYEIGKPASSRI-TIKNAH-LGGVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 550 ~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~h-~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
++||+|+.|++|++||++.+. ... ..+.+| ...|.+++|+ ++. |++++.|++|++|++.
T Consensus 549 ~~lasgs~D~~v~lW~~~~~~-~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 549 VRLATGSLDNSVIVWNMNKPS-DHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SEEEEEETTSCEEEEETTCTT-SCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CEEEEEECCCcEEEEECCCcc-cccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999999999998844 444 678899 8999999999 555 9999999999999984
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-77 Score=609.23 Aligned_cols=579 Identities=32% Similarity=0.574 Sum_probs=513.8
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCC----ceeeEeccCCCc-eEEEEECC--CCCE
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKP----LHVEFYGEHGYP-VTVARYSP--NGEW 73 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~----~~~~~~~~h~~~-v~~~~~s~--d~~~ 73 (612)
|.+++++.++++.|..+++.|.+++|||||++|++++++.|.+||++++ +....+.+|... |++++|+| ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~ 80 (615)
T 1pgu_A 1 MSSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 80 (615)
T ss_dssp -CCEEEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCccchhhccCCCCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE
Confidence 8899999999999999999999999999999999999999999999998 889999999999 99999999 9999
Q ss_pred EEEeeCcCeEEEeecCCC-------ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC
Q 007229 74 IASADVSGSVRIWGTHNG-------FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH 146 (612)
Q Consensus 74 las~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 146 (612)
||+++.||.|++||+.++ ......+..|...|.+++|+|++++|++++.+... ...++.|+.++.+..+.+|
T Consensus 81 l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~v~~~d~~~~~~~~~~~ 159 (615)
T 1pgu_A 81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSGNSLGEVSGH 159 (615)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTCCEEEECCSC
T ss_pred EEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC-ccEEEEEECCCcceeeecC
Confidence 999999999999999755 22566778899999999999999999999977432 3579999999999999999
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc---ceEEEEECCC-CCeEEEEEcCCcEEEEecCCC
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN---FVNCIRFSPD-GSKLISVSSDRKGLIYDGKSG 222 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~ 222 (612)
...|.+++|+|++++++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.++
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999986799999999999999999999999999999 9999999999 999999999999999999999
Q ss_pred Ceeeeee-ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec-cCCEEE
Q 007229 223 EKIGEFS-SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW-QNDHLI 300 (612)
Q Consensus 223 ~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 300 (612)
+.+..+. ....|...|.+++|+ ++++|++++.||.|++||+ .+++.+..+..... .....+..+.+ .+..++
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV----TTSKCVQKWTLDKQ-QLGNQQVGVVATGNGRII 313 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET----TTTEEEEEEECCTT-CGGGCEEEEEEEETTEEE
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC----CCCcEEEEEcCCCC-cccCceeEEEeCCCCeEE
Confidence 9888772 111688999999999 9999999999999999999 88888888876532 22233344444 688999
Q ss_pred EEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-e
Q 007229 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-V 379 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~ 379 (612)
+++.++.+++|++.. ......+.+|...|.++++ + . +++++.||.|++|++. ... ..|...|.++++ +
T Consensus 314 ~~~~~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~-~--~--l~~~~~dg~i~~w~~~---~~~--~~~~~~v~~~~~~~ 382 (615)
T 1pgu_A 314 SLSLDGTLNFYELGH-DEVLKTISGHNKGITALTV-N--P--LISGSYDGRIMEWSSS---SMH--QDHSNLIVSLDNSK 382 (615)
T ss_dssp EEETTSCEEEEETTE-EEEEEEECCCSSCEEEEET-T--T--TEEEETTSCEEETTTT---EEE--CCCCSCEEEEECCS
T ss_pred EEECCCCEEEEECCC-CcEEEEEeCCCCCEEEEEe-c--C--cEEECCCCeEEEEEch---hhc--CcccCceEEEEECC
Confidence 999999999999776 4556788899999999999 6 4 9999999999999998 222 559999999999 5
Q ss_pred ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeeecccceEEEEE
Q 007229 380 EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 380 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~ 457 (612)
++.+++++.|+.+++|++.+..... .+..++++|++ ..++.+..+.+.+|+ .++.+..+.+...+.+++
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~~~--------~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEFGS--------QPKVASANNDG-FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEECSS--------CEEEEEECSSS-EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred CcEEEEEeCCCCEEEEEcccCcccC--------CceEEEEcCCC-CEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence 8899999999999999988765432 67788899988 455555788899998 788888888999999999
Q ss_pred EccCCCeEEEEec-CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc-
Q 007229 458 IAPDGSEAIVGGQ-NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF- 535 (612)
Q Consensus 458 ~s~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~- 535 (612)
|+ ++++++++. ||.|++||+.+++... ..+..|...|++++|+|++++|++++.||.|++||+.+++.+. .+.+
T Consensus 454 ~~--~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~ 529 (615)
T 1pgu_A 454 LS--QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT-SRWAF 529 (615)
T ss_dssp EC--SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-CCSCC
T ss_pred Ec--CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee-EeecC
Confidence 99 889999999 9999999999877633 6778899999999999999999999999999999999999874 4555
Q ss_pred cccceeEEEecC----------CCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeE
Q 007229 536 HTARINCLAWSP----------SSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACI 604 (612)
Q Consensus 536 ~~~~i~~~~~s~----------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i 604 (612)
|...|++++|+| ++++||+++.|+.|++||++++. +++..+.+|...|++++|+ ++. |++++.||.|
T Consensus 530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v 607 (615)
T 1pgu_A 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPST-LVSSGADACI 607 (615)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCE
T ss_pred CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcCccceEEEEEcCCCC-eEEecCCceE
Confidence 999999999999 99999999999999999999855 7888899999999999999 888 9999999999
Q ss_pred EEEEeccC
Q 007229 605 RVWRLATE 612 (612)
Q Consensus 605 ~~w~~~~~ 612 (612)
++|++++|
T Consensus 608 ~iw~~~~~ 615 (615)
T 1pgu_A 608 KRWNVVLE 615 (615)
T ss_dssp EEEEEC--
T ss_pred EEEeeecC
Confidence 99999875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-76 Score=591.52 Aligned_cols=557 Identities=22% Similarity=0.351 Sum_probs=476.6
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
++|++.|++++|||||++||+++ ++.|+|||. ++++++.+.+|...|++++|+|||++||+++.|++|+|||.. ++
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~- 89 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ- 89 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SC-
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-
Confidence 46899999999999999999998 799999995 678889999999999999999999999999999999999965 44
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
....+.+|...|.+++|+||+++|++++.++. +.+|.. .........+|...+..+.++|++. .+++++.++.++
T Consensus 90 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~---~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~ 164 (577)
T 2ymu_A 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT---VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVK 164 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSC---EEEEET-TCCEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEE
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEcCCCc---eeeccc-ccceeeeccCCCCceeeeeeecCCc-cceeccccccee
Confidence 55688899999999999999999999999883 455543 4556677888999999999999999 599999999999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
+|+.... .......|...|.+++|+|++++|++++.|+.|++||. +++.+..+ .+|...|.+++|+|++++|+++
T Consensus 165 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~---~~~~~~v~~~~~s~dg~~l~~~ 239 (577)
T 2ymu_A 165 LWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL---TGHSSSVRGVAFSPDGQTIASA 239 (577)
T ss_dssp EECTTSC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE---ECCSSCEEEEEECTTSSCEEEE
T ss_pred cccccee-eeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEE---ecCCCCEEEEEECCCCCEEEEE
Confidence 9996544 45556789999999999999999999999999999995 56776666 3899999999999999999999
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec--cCCEEEEEEcCCEEEEEEcCCCCCCceeecCccccee
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW--QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 331 (612)
+.|+.|++|+. +++.+..+..+. ..+.++.+ ++..+++++.++.+++|+.. ......+.+|...|.
T Consensus 240 ~~d~~i~~w~~-----~~~~~~~~~~~~-----~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v~ 307 (577)
T 2ymu_A 240 SDDKTVKLWNR-----NGQLLQTLTGHS-----SSVNGVAFRPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVW 307 (577)
T ss_dssp ETTSCEEEECT-----TSCEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECCCSSCEE
T ss_pred eCCCEEEEEeC-----CCCEEEEEecCC-----CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC--CcEEEEEecCCCCeE
Confidence 99999999996 456666655443 23444444 47789999999999999954 355677889999999
Q ss_pred EEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceec
Q 007229 332 TLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHID 409 (612)
Q Consensus 332 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (612)
++++++ ++..+++++.|+.|++||......... ..|...+.++++ +++.+++++.++.+++|+..... . .....
T Consensus 308 ~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~-~-~~~~~ 383 (577)
T 2ymu_A 308 GVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-L-QTLTG 383 (577)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTSCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE-E-EEEEC
T ss_pred EEEECC-CCCEEEEEeCCCeEEEEeCCCCeeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE-E-EEecC
Confidence 999983 278999999999999999877665444 348899999998 67899999999999999964322 1 23344
Q ss_pred cCCCcceeeecCCCCcEEEEEeeccEEEee-cccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc
Q 007229 410 VGSQPLDLSLALSSPELALVSTESGVILLD-SLKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE 487 (612)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 487 (612)
....+.+++++|++..++....+..+.+|+ ..+.+..+. +...|++++|+||+++|++++.|+.|++||..... .
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~---~ 460 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL---L 460 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE---E
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE---E
Confidence 566788899999998888777778899998 444444444 78899999999999999999999999999976433 4
Q ss_pred eeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
..+.+|..+|++++|+|++++|++++.|+.|++||. +++.+ ..+.+|...|++++|+||+++||+++.|+.|++||..
T Consensus 461 ~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEE-EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEE-EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 678899999999999999999999999999999996 45554 5678899999999999999999999999999999964
Q ss_pred CCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEE
Q 007229 568 KPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 568 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~ 608 (612)
+ +++..+.+|.+.|++++|+ |+++|+|++.|++|++||
T Consensus 539 --~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 --G-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp --S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 4 7889999999999999999 999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-68 Score=539.21 Aligned_cols=525 Identities=22% Similarity=0.357 Sum_probs=446.0
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeE
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i 129 (612)
+..+.|.||++.|++++|||||++||+|+.|++|+|||. +++ +...+.+|...|.+++|+||+++|++++.++ .+
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~-~~~~l~gh~~~V~~l~fspdg~~las~~~d~---~i 81 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDK---TV 81 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC-EEEEEeCCCCCEEEEEECCCCCEEEEEeCCC---EE
Confidence 345669999999999999999999999999999999996 455 5668999999999999999999999999887 46
Q ss_pred EEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE
Q 007229 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
++|+. +++.+..+.+|...|.+++|+|+++ .+++++.|+.+++|+..... .....++...+.++.++|+++.+++++
T Consensus 82 ~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (577)
T 2ymu_A 82 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASAS 158 (577)
T ss_dssp EEEET-TSCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCCE-EEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEC-CCCEEEEEECCCCCEEEEEECCCCC-EEEEEcCCCceeecccccce-eeeccCCCCceeeeeeecCCccceecc
Confidence 77764 6788999999999999999999999 59999999999999976554 445678899999999999999999999
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
.++.+++|+.......... .+...+..++|+|+++++++++.|+.|++||. +++.+..+..+. ..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~-----~~v 224 (577)
T 2ymu_A 159 DDKTVKLWNRNGQLLQTLT----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHS-----SSV 224 (577)
T ss_dssp TTSEEEEECTTSCEEEEEE----CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-----TSCEEEEEECCS-----SCE
T ss_pred cccceeccccceeeeeecc----CCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-----CCcEEEEEecCC-----CCE
Confidence 9999999996544333333 78899999999999999999999999999996 566666665543 234
Q ss_pred eeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 290 VGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 290 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
.++.+. +..+++++.++.+++|+.. ......+.+|...|.+++|.+ ++..+++++.|+.+++||.... ......
T Consensus 225 ~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~-~~~~~~ 300 (577)
T 2ymu_A 225 RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQ-LLQTLT 300 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-EEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc-EEEEEe
Confidence 444444 6789999999999999953 456678889999999999983 2789999999999999997654 444445
Q ss_pred ecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee-cccce
Q 007229 368 KYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD-SLKVM 444 (612)
Q Consensus 368 ~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 444 (612)
.|...|.++++ ++..+++++.|+.+++|+...... .........+..++++|++..++....++.+.+|+ +.+.+
T Consensus 301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~ 378 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 378 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEE
T ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEE
Confidence 58999999998 678999999999999999875543 22334456677899999998777777777788888 44444
Q ss_pred eeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 445 SKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 445 ~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
..+. +...|++++|+||+++|++++.|+.|++||... +. ...+.+|...|++++|+||+++|++++.|+.|++||+
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL--LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE--EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 5444 788999999999999999999999999999654 33 5678899999999999999999999999999999997
Q ss_pred CCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCC
Q 007229 524 VSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDA 602 (612)
Q Consensus 524 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~ 602 (612)
.. +.+ ..+.+|..+|++++|+||+++||+++.|+.|++||.. + +++..+.+|...|++++|+ ++++|++++.||
T Consensus 456 ~~-~~~-~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 456 NG-QLL-QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp TS-CEE-EEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CC-CEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC
Confidence 54 443 5577899999999999999999999999999999965 4 7888999999999999999 899999999999
Q ss_pred eEEEEEec
Q 007229 603 CIRVWRLA 610 (612)
Q Consensus 603 ~i~~w~~~ 610 (612)
.|++||.+
T Consensus 531 ~v~lwd~~ 538 (577)
T 2ymu_A 531 TVKLWNRN 538 (577)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99999965
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=536.87 Aligned_cols=526 Identities=15% Similarity=0.169 Sum_probs=429.3
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCc----CeEEEee
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVS----GSVRIWG 87 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d----~~i~iwd 87 (612)
..|.+.|++++|||||++||+++ ++.|+|||+.+++ ....+.+|.+.|.+++|+|||++||+++.+ +.|++||
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 35788999999999999999998 8999999997543 455688999999999999999999998765 4788898
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
.. + ....+.+|...|.+++|+|++. .|++++.++ .+++|+..+++.+..+.+|...|.+++|+|+++ +|+++
T Consensus 136 ~~--~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~---~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~ 208 (611)
T 1nr0_A 136 TG--T-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDN---TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFAST 208 (611)
T ss_dssp TC--C-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTS---CEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred CC--C-CcceecCCCCCceEEEECCCCCeEEEEEeCCC---eEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEE
Confidence 53 3 3346889999999999999997 599999988 578888778889999999999999999999999 69999
Q ss_pred ecCCeEEEEeCCCCeeeeccc-------ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 167 GEDFLVNFYEGPPFKFKLSHR-------EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+.|++|++||+.+++....+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+.....+.....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 999999999999998887773 7999999999999999999999999999999999998888754334555666
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
.+.| +++.+++++.|+.+++|+. ..++....+..+. ..+.++.++ +..+++++.++.|++||+....
T Consensus 289 ~~~~--~~~~l~s~s~d~~i~~~~~----~~~~~~~~~~gh~-----~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 289 GIIW--TKQALVSISANGFINFVNP----ELGSIDQVRYGHN-----KAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEEE--CSSCEEEEETTCCEEEEET----TTTEEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEE--cCCEEEEEeCCCcEEEEeC----CCCCcceEEcCCC-----CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 7777 6788999999999999998 7777666655443 345555554 7899999999999999987654
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec---eecccceEEEEe--eccEEEEecCCCeE
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE---KKYDARIKCLAA--VEEVIFTAGFDNKV 392 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---~~~~~~i~~~~~--~~~~l~~~~~~~~i 392 (612)
.......+|...+.++++++ +..+++++.|+.+++|+.......... ........++++ +++.++++ .++.+
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v 434 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTS--KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHI 434 (611)
T ss_dssp EEECSSCSCSSCEEEEEECT--TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEE
T ss_pred eeeecccCCcceEEEEEECC--CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE-eCceE
Confidence 43322367999999999995 568999999999999998875432211 113334566666 44455555 67789
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc----ceeeecccceEEEEEEccCCCeEEEE
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK----VMSKIDLGFTVTACAIAPDGSEAIVG 468 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~ 468 (612)
++|+.. . .........+.+++++|++..++..+.++.+.+|+... ......|...|++++|+||+++|+++
T Consensus 435 ~~~~~~--~---~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 435 AIYSHG--K---LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp EEEETT--E---EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCC--c---eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEE
Confidence 999832 1 12233556678899999998887777788899998321 12334588899999999999999999
Q ss_pred ecCCeEEEEEccC-cccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee-eccccc-ccceeEEEe
Q 007229 469 GQNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL-NNMLFH-TARINCLAW 545 (612)
Q Consensus 469 ~~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~-~~~i~~~~~ 545 (612)
+.|+.|++|++.+ +++........|...|.+++|+||+++||+++.|++|++||+.++.... ..+.+| ...|++++|
T Consensus 510 s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~f 589 (611)
T 1nr0_A 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 589 (611)
T ss_dssp ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEE
Confidence 9999999999987 5542221344599999999999999999999999999999999876432 456789 899999999
Q ss_pred cCCCcEEEEeecCcEEEEEEcc
Q 007229 546 SPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 546 s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
+||++ |++++.|++|++|++.
T Consensus 590 s~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 590 LNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EETTE-EEEEETTSCEEEEECC
T ss_pred cCCCE-EEEecCCCCEEEEecc
Confidence 99998 9999999999999974
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-68 Score=582.60 Aligned_cols=568 Identities=15% Similarity=0.198 Sum_probs=489.0
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.|.+.|++++|||||++|++++ ++.|++||+.+++.+..+.+|...|++++|+|||++||+++.||.|+|||+.+++ .
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~ 691 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-L 691 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-E
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-e
Confidence 5788999999999999999988 7999999999999999999999999999999999999999999999999999998 5
Q ss_pred eeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 95 KNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
...+.+|...|.+++|+| ++..+++++.++ .+.+|++++++.+..+.+|...|.+++|+|+++ .+++++.||.|
T Consensus 692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v 767 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF---FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTL 767 (1249)
T ss_dssp EEEEECCSSCEEEEEECSSSSCCEEEEEETTS---CEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEE
T ss_pred EEEEcCCCCcEEEEEEecCCCceEEEEEeCCC---eEEEEECCCcchhheecCCCCCEEEEEEecCCC-EEEEEECCCeE
Confidence 568889999999999999 556888888887 578899889999999999999999999999999 59999999999
Q ss_pred EEEeCCCCeeeecccc-------------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 173 NFYEGPPFKFKLSHRE-------------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
++||+.+++....+.. +...+.+++|+|+|+.+++++ ++.+.+||+.++.....+. .+|...+.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~--~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH--TGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE--CSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc--CCCCCceE
Confidence 9999998877655431 234788999999999999877 7899999999999888773 47899999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCC
Q 007229 240 AVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
+++|+|+++++++++.||.|++|++ .++..+..+..+. ..+.++.++ +..+++++.++.+++|++....
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~----~~~~~~~~~~~h~-----~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNI----DSRLKVADCRGHL-----SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEET----TTTEEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEc----CCCceeeecCCCc-----cceEEEEECCCCCEEEEEeCCCeEEEEEccccc
Confidence 9999999999999999999999999 8888887776543 345555554 6789999999999999965311
Q ss_pred CC------------------------------------ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 318 KA------------------------------------PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 318 ~~------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.. ......+...+.++++++ +++.+++|+.+|.|++||+.++.
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETTSCCEEEETTTTS
T ss_pred eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCCCCEEEEEcCCCc
Confidence 00 000112345677888873 28899999999999999999998
Q ss_pred eeeeceecccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee
Q 007229 362 SSKLEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD 439 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (612)
.......|...|.++++ +++++++++.|+.+++|++.++... ........+..+++++++ .++..+.++.+.+|+
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE--CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEE
T ss_pred eeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE--EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEE
Confidence 88877779999999999 7789999999999999999887654 233555667788888854 677777778899998
Q ss_pred --cccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC
Q 007229 440 --SLKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR 516 (612)
Q Consensus 440 --~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 516 (612)
+++....+. +...+++++|+|+++++++++.||.|++||+.+++. ...+.+|.+.|++++|+|++++|++++.||
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--LHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--SBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--eeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 455555555 788899999999999999999999999999998876 677889999999999999999999999999
Q ss_pred eEEEEecCCcceeeec--------ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEE
Q 007229 517 EAIVWDRVSKEVKLNN--------MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVA 588 (612)
Q Consensus 517 ~i~iwd~~~~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 588 (612)
.|++||+.+++.+... ..+|...|++++|+|||++|++++ |.|++||+.+ + +.+..+..|...|.+++
T Consensus 1150 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~-g-~~~~~~~~~~~~i~~~~ 1225 (1249)
T 3sfz_A 1150 EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVAT-G-DSSQTFYTNGTNLKKIH 1225 (1249)
T ss_dssp CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSS-C-BCCCCCCCSSCCCCCCE
T ss_pred EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCC-C-ceeeeeeccCCcccEEE
Confidence 9999999998875332 256899999999999999999885 8999999998 6 67888889999999999
Q ss_pred Ee-cCceEEEccCCCeEEEEEec
Q 007229 589 FM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 589 ~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
|+ ++++|++++.||.|++|++.
T Consensus 1226 ~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1226 VSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp ECSSSCCEEEECTTCCEEEECCC
T ss_pred ECCCCCEEEEecCCcEEEEEeec
Confidence 99 89999999999999999974
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-62 Score=508.27 Aligned_cols=580 Identities=11% Similarity=0.059 Sum_probs=416.0
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.|.+.|++++|+||+++||+++ ++.|+||+..+.+....+ .|...|++++|+| |++||+++.|++|+|||+.+++.+
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence 5678999999999999999998 899999999887766544 5889999999999 889999999999999999998744
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCcee-----------eeeccCCceEEEEEEcCCCCEEE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTV-----------GDFDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~l 163 (612)
..+. |...|++++|+|++++|++++.++ .+++|+.++++.. ..+.+|...|.+++|+|++..++
T Consensus 93 -~~~~-~~~~V~~v~~sp~g~~l~sgs~dg---~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 93 -TTVF-VPGKITSIDTDASLDWMLIGLQNG---SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp -EEEE-CSSCEEEEECCTTCSEEEEEETTS---CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred -EEEc-CCCCEEEEEECCCCCEEEEEcCCC---cEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 3444 778999999999999999999988 5678877776653 34578999999999999765579
Q ss_pred EEeecCCeEEEEeCCCCeeeeccccc------------------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHREH------------------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
++|+.|+.| +||+++++.+..+..| ...|.+++|+|+|++|++++.||.|++||+++++.+
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999 9999999988777655 578999999999999999999999999999999876
Q ss_pred ee--eeccC-------------CccccEEEEEEec----CC-CEEEEEeCC-----CcEEEEEeecCC------------
Q 007229 226 GE--FSSED-------------GHHGSIYAVSWSP----DG-KKVLTVSAD-----KSAKVWEILEDG------------ 268 (612)
Q Consensus 226 ~~--~~~~~-------------~~~~~v~~i~~~~----~~-~~l~~~~~d-----g~i~iw~~~~~~------------ 268 (612)
.. +.... .+..+|.+++|++ ++ .++++++.+ ..+.+|++....
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 53 21001 1355899999964 33 466777665 378899862110
Q ss_pred --CCCeeEeeeeccCccccceeeeee--------eccCCEEEEEEcCCEEEEEEcCCCCCCc------eeecCcccceeE
Q 007229 269 --SGGRVIKTFASSTSNAVEDMLVGC--------LWQNDHLITVSLGGIISIFSASNLDKAP------LSFSGHVKNVST 332 (612)
Q Consensus 269 --~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~v~~ 332 (612)
...+..+.+............... ..+...+++++.++.+++|++....... ..+..|...|++
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 011122222211111111111111 0124478899999999999985432111 123345455655
Q ss_pred EEEEe---------------------------------cCCcEEEEEecCCcEEEEEcCCceeee--ec---------ee
Q 007229 333 LTALK---------------------------------ISQQTILSSSYDGAIIKWIRGVGYSSK--LE---------KK 368 (612)
Q Consensus 333 ~~~~~---------------------------------~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~---------~~ 368 (612)
+++.+ ++++++++|+.|++|++||+..+.... .. ..
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 55521 237899999999999999998874321 01 14
Q ss_pred cccceEEEEe--eccEEEEecCCCeEEEEecCCCCCCcc------ceeccCCCcceeeecCCCCcEEEEEeeccEEEeec
Q 007229 369 YDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGECGDA------EHIDVGSQPLDLSLALSSPELALVSTESGVILLDS 440 (612)
Q Consensus 369 ~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (612)
|...|.++++ ++++|++++.|++|++|++.+.+.... ...........+...++ ..........-.+...
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g 564 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG--VLVDVRDRAPTGVRQG 564 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC--SEEECGGGCCTTCSEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc--ccccccccCCCCCCCc
Confidence 7789999999 688999999999999999987642100 00000000000100110 0000000000000001
Q ss_pred ccceeeec-ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc---eeec-cccCceEEEEEc-----CCC---c
Q 007229 441 LKVMSKID-LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE---MVLE-KHRGAITVIQYS-----PDV---S 507 (612)
Q Consensus 441 ~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~---~~~~-~~~~~i~~~~~s-----~~~---~ 507 (612)
.+.+..+. |...|++++||||| +||+|+.|++|++||+++..+... ..+. +|.+.|++++|+ ||| +
T Consensus 565 ~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 565 FMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred cceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 12233444 78899999999999 999999999999999987765211 2343 899999999999 885 8
Q ss_pred EEEEEcCCCeEEEEec---CCcceeeeccccc-----ccceeEEE-ec----------------------CCCcEEEEee
Q 007229 508 MFASADGNREAIVWDR---VSKEVKLNNMLFH-----TARINCLA-WS----------------------PSSTMVATGS 556 (612)
Q Consensus 508 ~l~~~~~d~~i~iwd~---~~~~~~~~~~~~~-----~~~i~~~~-~s----------------------~~~~~l~s~~ 556 (612)
+|++++.|++|++||+ .+++.. ..+.+| .++|.+++ |+ +++..|+++
T Consensus 644 ~l~sgs~D~tv~~wd~~p~~~g~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~- 721 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKILPASGGKFD-VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG- 721 (902)
T ss_dssp EEEEEETTSEEEEEEEEECGGGCEE-EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-
T ss_pred EEEEEecCCcEEEEEEecCCCCcEE-EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-
Confidence 9999999999999999 777765 344444 46777776 65 566555555
Q ss_pred cCcEEEEEEccCCCcceeeeecccccCeeeE---E------Ee-cCceEEEccCCCeEEEEEecc
Q 007229 557 IDTCVIIYEIGKPASSRITIKNAHLGGVYGV---A------FM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 557 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~---~------~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
+..||||++.+ + ++......|...+.++ . |+ ++..|++++.||+|++|++.+
T Consensus 722 -~~~ir~~~~~~-~-k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 722 -FDDIRLITLGK-S-KSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPD 783 (902)
T ss_dssp -SSEEEEECTTC-C-CEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTT
T ss_pred -ccceEEEeCcc-c-cceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcc
Confidence 77899999998 5 6666666777777776 5 67 788899999999999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-62 Score=538.55 Aligned_cols=539 Identities=18% Similarity=0.262 Sum_probs=454.5
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
...+.+|.+.|++++|+|||++||+|+.||+|++||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+.+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~v 683 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADK---KVKI 683 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCC---eEEE
Confidence 44578999999999999999999999999999999999998 4557889999999999999999999999988 6888
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
|++.+++.+..+.+|...|.+++|+|++ ..++++|+.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 8888999999999999999999999953 236999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCeeeeeecc----------CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 211 DRKGLIYDGKSGEKIGEFSSE----------DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
||.|++||+.+++....+... ......+.+++|+|+++.+++++ ++.+.+||+ .++.....+...
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~----~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDI----HTSGLLAEIHTG 838 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEET----TTCCEEEEEECS
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEe----cCCCceeEEcCC
Confidence 999999999998877665321 12234788999999999999886 689999999 888877777644
Q ss_pred CccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 281 TSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
....+ ........+..+++++.++.+++|++.. ......+.+|...|.+++|++ ++..+++++.||.+++|++...
T Consensus 839 ~~~~v--~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 839 HHSTI--QYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp SSSCC--CEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHH
T ss_pred CCCce--EEEEEcCCCCEEEEEeCCCeEEEEEcCC-CceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEcccc
Confidence 32221 2223333488999999999999999765 455677889999999999994 2789999999999999997542
Q ss_pred eeee-------------------------------------eceecccceEEEEe--eccEEEEecCCCeEEEEecCCCC
Q 007229 361 YSSK-------------------------------------LEKKYDARIKCLAA--VEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 361 ~~~~-------------------------------------~~~~~~~~i~~~~~--~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
.... ........+.++++ +++++++++.+|.+++|++.++.
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 1100 00113456777777 78899999999999999998876
Q ss_pred CCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEc
Q 007229 402 CGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSI 479 (612)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~ 479 (612)
.. .........+..++++|++..++..+.++.+.+|+ .++......+...+.+++++|++ .+++++.||.|++||+
T Consensus 995 ~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 995 VF-SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp CE-EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEET
T ss_pred ee-eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEEC
Confidence 54 33345566788999999998888888888899998 44445555688899999999976 5778899999999999
Q ss_pred cCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCc
Q 007229 480 SGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDT 559 (612)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~ 559 (612)
.+++. ...+.+|.+.|++++|+|++++|++++.|++|++||+.+++.. ..+.+|..+|++++|+|||++||+++.||
T Consensus 1073 ~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1073 ITGRI--ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-HELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp TTTCC--CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-BCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCce--eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee-eeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 99887 6778899999999999999999999999999999999998876 56778999999999999999999999999
Q ss_pred EEEEEEccCCCcceeeee---------cccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 560 CVIIYEIGKPASSRITIK---------NAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 560 ~i~iwd~~~~~~~~~~~~---------~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
.|++||+.+ + +.+..+ .+|.+.|++++|+ ++.+|++++ |.|++||++++
T Consensus 1150 ~i~vwd~~~-~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1150 EIRIWNVSD-G-QLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp CCCEEESSS-S-CCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEEEEECCC-C-ceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 999999998 4 444433 6799999999999 889999886 89999998763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-61 Score=492.08 Aligned_cols=510 Identities=16% Similarity=0.181 Sum_probs=431.6
Q ss_pred CCCCc-eeEEEEcc--CCCEEEEec-CCEEEEEeCCCC--------ceeeEeccCCCceEEEEECCCCCEEEEeeCc---
Q 007229 16 TERGR-GILISGNP--KTDTILYCN-GRSVLIRYLDKP--------LHVEFYGEHGYPVTVARYSPNGEWIASADVS--- 80 (612)
Q Consensus 16 ~~~~~-v~~~~~s~--d~~~l~~~~-~~~i~i~~~~~~--------~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--- 80 (612)
.|.+. |.+++|+| |+++|++++ ++.|++||+.++ +....+.+|...|.+++|+|++++|++++.+
T Consensus 61 ~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 140 (615)
T 1pgu_A 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 140 (615)
T ss_dssp TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC
T ss_pred cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC
Confidence 46778 99999999 999999998 899999999754 6677788999999999999999999999987
Q ss_pred -CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEEecCCceeeeeccCCc---eEEEEEE
Q 007229 81 -GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR---RVLSCEF 155 (612)
Q Consensus 81 -~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~---~v~~~~~ 155 (612)
+.|.+|| .++ ....+..|...|.+++|+|+++ .+++++.++ .+++|+..+++.+..+.+|.. .|.+++|
T Consensus 141 ~~~v~~~d--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (615)
T 1pgu_A 141 FGVFISWD--SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDG---SVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 214 (615)
T ss_dssp SEEEEETT--TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTT---EEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred ccEEEEEE--CCC-cceeeecCCccEEEEEECCCCCcEEEEEeCCC---cEEEEeCCCcceeeeecccCCCCceEEEEEE
Confidence 7899999 344 4557889999999999999998 788888887 678888889999999999999 9999999
Q ss_pred cCC-CCEEEEEeecCCeEEEEeCCCCeeeecc-c---ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 156 KPT-RPFRIATCGEDFLVNFYEGPPFKFKLSH-R---EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 156 ~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
+|+ ++ ++++++.|+.|++||+.+++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..
T Consensus 215 ~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 215 SPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp CSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999 88 5999999999999999999999888 6 899999999999 999999999999999999999998888743
Q ss_pred c-CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 231 E-DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 231 ~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
. ..+...+.++.|. +++++++++.||.|++||+ .+++.+..+..+. ..+.++.+ ++ +++++.+|.++
T Consensus 293 ~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~----~~~~~~~~~~~~~-----~~v~~~~~-~~-l~~~~~dg~i~ 360 (615)
T 1pgu_A 293 DKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL----GHDEVLKTISGHN-----KGITALTV-NP-LISGSYDGRIM 360 (615)
T ss_dssp CTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET----TEEEEEEEECCCS-----SCEEEEET-TT-TEEEETTSCEE
T ss_pred CCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC----CCCcEEEEEeCCC-----CCEEEEEe-cC-cEEECCCCeEE
Confidence 2 2235788888886 8899999999999999999 7777777776543 45677777 66 99999999999
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe--eccEEEEec
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA--VEEVIFTAG 387 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~ 387 (612)
+|++. .+ . .+|...|.++++.+ +..+++++.|+.+++|++...+... .+.++++ ++..++++
T Consensus 361 ~w~~~----~~-~-~~~~~~v~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~~~~~~~~~- 424 (615)
T 1pgu_A 361 EWSSS----SM-H-QDHSNLIVSLDNSK--AQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANNDGFTAVLT- 424 (615)
T ss_dssp ETTTT----EE-E-CCCCSCEEEEECCS--TTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECSSSEEEEEE-
T ss_pred EEEch----hh-c-CcccCceEEEEECC--CcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcCCCCEEEEe-
Confidence 99977 22 2 78999999999954 7899999999999999987665432 4566666 45445554
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe-eccEEEeeccc--ce-ee-ecccceEEEEEEccCC
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST-ESGVILLDSLK--VM-SK-IDLGFTVTACAIAPDG 462 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~-~~~~~~i~~~~~s~~~ 462 (612)
.++.+.+|+..++... ........+..++++ +..++.... ++.+.+|+... .. .. ..+...|++++|+|++
T Consensus 425 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 425 NDDDLLILQSFTGDII--KSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp TTSEEEEEETTTCCEE--EEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred CCCceEEEeccCCcee--eecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC
Confidence 8899999998766543 233456677788888 545555555 67788988332 21 22 2378899999999999
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeecc-ccCceEEEEEcC----------CCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEK-HRGAITVIQYSP----------DVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~i~~~~~s~----------~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
++|++++.||.|++||+.+++. ...+.+ |...|++++|+| ++++|++++.||.|++||+.++.....
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 578 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 578 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred CEEEEcCCCCeEEEeeCCCCcc--eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence 9999999999999999998877 566777 999999999999 999999999999999999999844446
Q ss_pred cccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.+.+|...|++++|+|+++ |++++.|+.|++|+++.
T Consensus 579 ~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 579 ALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred hhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 7888999999999999999 99999999999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-59 Score=488.32 Aligned_cols=511 Identities=14% Similarity=0.141 Sum_probs=382.9
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
..+|...|++++|+|++++||+|+.||+|+|||..+.+.. ....|...|.+++|+| |++|++++.++ .+++|++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--~~~~~~~~V~~l~fsp-g~~L~S~s~D~---~v~lWd~ 86 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--IKLEDRSAIKEMRFVK-GIYLVVINAKD---TVYVLSL 86 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--EECSSCCCEEEEEEET-TTEEEEEETTC---EEEEEET
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--EEcCCCCCEEEEEEcC-CCEEEEEECcC---eEEEEEC
Confidence 3489999999999999999999999999999999877632 2234788999999999 88999999988 6788888
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-----------ecccccccceEEEEECCC-C
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-----------LSHREHSNFVNCIRFSPD-G 202 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~-~ 202 (612)
++++.+..+. |...|++++|+|+++ .+++|+.||.|++||+.+++.. ..+.+|.++|.+++|+|+ +
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 8999988886 778999999999999 5999999999999999988764 345789999999999996 4
Q ss_pred CeEEEEEcCCcEEEEecCCCCeeeeeecc---------------CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecC
Q 007229 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSE---------------DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267 (612)
Q Consensus 203 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~ 267 (612)
..|++++.||.| +||+++++.+..+... ..|...|.+++|+|+|++|++++.||.|++||+
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~--- 240 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA--- 240 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET---
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC---
Confidence 789999999999 9999999888776311 123578999999999999999999999999999
Q ss_pred CCCCeeEeeeec-----cCc------c--ccceeeeeeecc----C---CEEEEEEcC-----CEEEEEEcCCC------
Q 007229 268 GSGGRVIKTFAS-----STS------N--AVEDMLVGCLWQ----N---DHLITVSLG-----GIISIFSASNL------ 316 (612)
Q Consensus 268 ~~~~~~~~~~~~-----~~~------~--~~~~~~~~~~~~----~---~~~~~~~~~-----~~i~~~~~~~~------ 316 (612)
.+++++..... +.. . .....+.++.|. + ..+++++.+ ..+.+|++...
T Consensus 241 -~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~ 319 (902)
T 2oaj_A 241 -NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319 (902)
T ss_dssp -TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred -CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence 77777653211 100 0 112346666663 2 345566554 37888884311
Q ss_pred -----------CCCceeec-CcccceeEEEEEe---------cCCcEEEEEecCCcEEEEEcCCceeeee-------cee
Q 007229 317 -----------DKAPLSFS-GHVKNVSTLTALK---------ISQQTILSSSYDGAIIKWIRGVGYSSKL-------EKK 368 (612)
Q Consensus 317 -----------~~~~~~~~-~~~~~v~~~~~~~---------~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------~~~ 368 (612)
......+. .+...+..+.+.+ .++..+++++.||.|++||+.++..... ...
T Consensus 320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~ 399 (902)
T 2oaj_A 320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW 399 (902)
T ss_dssp CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT
T ss_pred chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc
Confidence 01122222 3566777777643 2345788899999999999976643221 111
Q ss_pred cccceEEEEe------------------------------------eccEEEEecCCCeEEEEecCCCCCCccceeccCC
Q 007229 369 YDARIKCLAA------------------------------------VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412 (612)
Q Consensus 369 ~~~~i~~~~~------------------------------------~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 412 (612)
|...|.++++ +++.+++++.|++|++||+.++.........
T Consensus 400 ~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~--- 476 (902)
T 2oaj_A 400 LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFE--- 476 (902)
T ss_dssp BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEE---
T ss_pred cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEE---
Confidence 3344554443 4567777777777777777665321000000
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc--------
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL-------- 484 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~-------- 484 (612)
+.+. +.+ ...|...|++++|+||+++||+|+.||+|++|++.+++.
T Consensus 477 ----~~l~---------------------~~~-~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 477 ----VNLS---------------------RTL-NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp ----EEHH---------------------HHT-TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred ----eech---------------------hhc-CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence 0000 000 013556899999999999999999999999999987631
Q ss_pred -----------------------------------ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee
Q 007229 485 -----------------------------------TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK 529 (612)
Q Consensus 485 -----------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~ 529 (612)
.+...+.+|.+.|++++||||| +||+|+.|++|++||++++..+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence 1245678899999999999999 9999999999999999887764
Q ss_pred e----eccc-ccccceeEEEec-----CCC---cEEEEeecCcEEEEEEc---cCCCcceeeeecccc-----cCeeeEE
Q 007229 530 L----NNML-FHTARINCLAWS-----PSS---TMVATGSIDTCVIIYEI---GKPASSRITIKNAHL-----GGVYGVA 588 (612)
Q Consensus 530 ~----~~~~-~~~~~i~~~~~s-----~~~---~~l~s~~~d~~i~iwd~---~~~~~~~~~~~~~h~-----~~v~~~~ 588 (612)
. ..+. +|...|++++|+ ||| ++|++|+.|++|++||+ .+ + ++...+.+|. ++|.++.
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~-g-~~~~~~~~~~~~~~~~~v~~i~ 687 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG-G-KFDVQLMDITNVTSKGPIHKID 687 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG-G-CEEEEEEEEEECCSSCCCCEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC-C-cEEEEecCceecCCCCceEEEE
Confidence 3 2343 899999999999 886 89999999999999999 55 5 6777777774 6788777
Q ss_pred -Ee----------------------cCceEEEccCCCeEEEEEecc
Q 007229 589 -FM----------------------DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 589 -~~----------------------~~~~l~s~~~d~~i~~w~~~~ 611 (612)
|+ .+.+++.++ +..||+|++.+
T Consensus 688 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~ 732 (902)
T 2oaj_A 688 AFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGK 732 (902)
T ss_dssp EEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTC
T ss_pred eEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCcc
Confidence 54 133455555 77899999875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=454.66 Aligned_cols=477 Identities=17% Similarity=0.221 Sum_probs=382.8
Q ss_pred ceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
|.+.+.+.+. .|.+.|.+++|||||++||+++ ++.|.|||+.+++.+..+.+|...|++++|+|++++||+++.|
T Consensus 1 m~l~~~~~~~----~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 76 (814)
T 3mkq_A 1 MKLDIKKTFS----NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (814)
T ss_dssp -CCCCEEEEE----EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred CCcccceeee----cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC
Confidence 4455555553 4677999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcC-C
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKP-T 158 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~-~ 158 (612)
|.|++||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+++++ .....+.+|...|.+++|+| +
T Consensus 77 g~i~vw~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 77 FRIRVFNYNTGE-KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL---TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp SEEEEEETTTCC-EEEEEECCSSCEEEEEECSSSSEEEEEETTS---EEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred CeEEEEECCCCc-EEEEEecCCCCEEEEEEeCCCCEEEEEcCCC---EEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence 999999999998 5557888999999999999999999999988 6788888876 77788899999999999999 6
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecccccc-cceEEEEECC--CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-NFVNCIRFSP--DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
+. .+++++.||.|++||+.++.....+..+. ..+.+++|+| ++++|++++.||.|++||+.+++.+..+ .+|.
T Consensus 153 ~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~ 228 (814)
T 3mkq_A 153 PS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL---EGHM 228 (814)
T ss_dssp EE-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE---ECCS
T ss_pred CC-EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE---cCCC
Confidence 65 69999999999999999888777766554 8899999999 9999999999999999999999988887 3789
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
..|.+++|+|+++++++++.||.|++||+ .+++.+..+
T Consensus 229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~----~~~~~~~~~-------------------------------------- 266 (814)
T 3mkq_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNS----STYKVEKTL-------------------------------------- 266 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEET----TTCSEEEEE--------------------------------------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCCcEEEEe--------------------------------------
Confidence 99999999999999999999999999999 665554433
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe---E
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK---V 392 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~---i 392 (612)
..|...+.++++++.....+++.+.++.+.+|++..... ...+..++..+++++.+.. +
T Consensus 267 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~ 328 (814)
T 3mkq_A 267 --------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----------TLSLDPVGKLVWSGGKNAAASDI 328 (814)
T ss_dssp --------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC----------CEEECSSSEEEEECCTTSCTTCE
T ss_pred --------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc----------eeEECCCCCEEEECcccccceee
Confidence 345667888888853334445555577788888764432 2233334555555544331 1
Q ss_pred EEE------ecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEE
Q 007229 393 WRV------PLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAI 466 (612)
Q Consensus 393 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 466 (612)
... ++...... .........+...+.+++|+|+|++++
T Consensus 329 ~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~spdg~~la 372 (814)
T 3mkq_A 329 FTAVIRGNEEVEQDEPL------------------------------------SLQTKELGSVDVFPQSLAHSPNGRFVT 372 (814)
T ss_dssp EEEECCSCCCCCSSSCB------------------------------------CCCCEEECCCSSCCSEEEECTTSSEEE
T ss_pred eeeecccccccccCccc------------------------------------eeeeecCCCCccCCceeEECCCCCEEE
Confidence 111 11111000 000011112345688999999999999
Q ss_pred EEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEec
Q 007229 467 VGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS 546 (612)
Q Consensus 467 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 546 (612)
+++ +|.+.+|++..... .+.+.+.+++|+|+++++++++.++.|++|+ .+.+|...+.+++|+
T Consensus 373 ~~~-~~~~~i~~~~~~~~-------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~---------~~~~~~~~v~~~~~s 435 (814)
T 3mkq_A 373 VVG-DGEYVIYTALAWRN-------KAFGKCQDFVWGPDSNSYALIDETGQIKYYK---------NFKEVTSWSVPMHSA 435 (814)
T ss_dssp EEE-TTEEEEEETTTTEE-------EEEEECSEEEECTTSSCEEEECTTCCEEEEE---------TTEECTTCCCCCSSC
T ss_pred Eec-CCEEEEEECccccc-------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEE---------CCCCccceEEcCCcC
Confidence 988 89999999764332 2456789999999999999999999999995 244577889999999
Q ss_pred CCC---cEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEc------cCCCeEEEEE
Q 007229 547 PSS---TMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSS------GEDACIRVWR 608 (612)
Q Consensus 547 ~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~------~~d~~i~~w~ 608 (612)
|++ ++|++++.|+.|++||+.+ + +.+..+..|.. .+.|+ ++++|+++ +.++.+.+|-
T Consensus 436 ~dg~~~~~l~~~~~d~~v~~~d~~~-~-~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 436 IDRLFSGALLGVKSDGFVYFFDWDN-G-TLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp CCEEECSSSEEEEETTEEEEECTTT-C-CEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ccceecceEEEEecCCEEEEEECCc-C-cEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 998 6899999999999999998 6 77888887775 89999 89999999 6776666653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-51 Score=427.18 Aligned_cols=435 Identities=19% Similarity=0.276 Sum_probs=363.5
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeE
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i 129 (612)
+..+.+.+|.+.|++++|+|+|++||+++.||.|+|||+.+++ ....+..|...|.+++|+|++++|++++.++ .+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i 79 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-EVRSIQVTETPVRAGKFIARKNWIIVGSDDF---RI 79 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEEEGGGTEEEEEETTS---EE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCC---eE
Confidence 4566789999999999999999999999999999999999987 5568889999999999999999999999987 68
Q ss_pred EEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC-eeeecccccccceEEEEECC-CCCeEEE
Q 007229 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF-KFKLSHREHSNFVNCIRFSP-DGSKLIS 207 (612)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 207 (612)
.+|++++++.+..+.+|...|++++|+|+++ .+++++.||.|++||+.++ .....+.+|...|.+++|+| +++.|++
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 8899899999999999999999999999999 5999999999999999887 66777889999999999999 8899999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec--CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP--DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 285 (612)
++.||.|++||+.+++....+. ..+...+..++|+| +++++++++.||.|++||+ .+++.+..
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~~~~~~--------- 223 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----QTKSCVAT--------- 223 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET----TTTEEEEE---------
T ss_pred EeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC----CCCcEEEE---------
Confidence 9999999999999888777763 24558899999999 9999999999999999998 66555433
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
+.+|...+.+++|++. +..+++++.||.|++||+.++.....
T Consensus 224 -------------------------------------~~~~~~~v~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~ 265 (814)
T 3mkq_A 224 -------------------------------------LEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWNSSTYKVEKT 265 (814)
T ss_dssp -------------------------------------EECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred -------------------------------------EcCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3457788999999842 77999999999999999999888887
Q ss_pred ceecccceEEEEee--cc-EEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 366 EKKYDARIKCLAAV--EE-VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 366 ~~~~~~~i~~~~~~--~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
...+...+.++++. +. .+++.+.++.+.+|++....
T Consensus 266 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 304 (814)
T 3mkq_A 266 LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE----------------------------------------- 304 (814)
T ss_dssp ECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS-----------------------------------------
T ss_pred eecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC-----------------------------------------
Confidence 77788899999983 32 24666667778888875543
Q ss_pred ceeeecccceEEEEEEccCCCeEEEEecCCe---EEE------EEccCccc--ccceeeccccCceEEEEEcCCCcEEEE
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEAIVGGQNGK---LHI------YSISGNTL--TEEMVLEKHRGAITVIQYSPDVSMFAS 511 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---v~i------~d~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (612)
..++++|+++.+++++.+.. +.. |++..+.. .....+..+...+.+++|+|+|+++++
T Consensus 305 -----------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~ 373 (814)
T 3mkq_A 305 -----------PTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTV 373 (814)
T ss_dssp -----------CCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEE
T ss_pred -----------ceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEE
Confidence 23678888888888766542 221 22222222 112334566778999999999999999
Q ss_pred EcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-
Q 007229 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM- 590 (612)
Q Consensus 512 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~- 590 (612)
++ |+.+.+|++...... +.+.+.+++|+||+++||+++.++.|++|+.. .+|...+..+.|+
T Consensus 374 ~~-~~~~~i~~~~~~~~~------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~ 436 (814)
T 3mkq_A 374 VG-DGEYVIYTALAWRNK------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAI 436 (814)
T ss_dssp EE-TTEEEEEETTTTEEE------EEEECSEEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCC
T ss_pred ec-CCEEEEEECcccccc------CCCceEEEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCc
Confidence 98 899999998654432 45789999999999999999999999999632 3577788999999
Q ss_pred cC---ceEEEccCCCeEEEEEecc
Q 007229 591 DD---FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 591 ~~---~~l~s~~~d~~i~~w~~~~ 611 (612)
++ +.|++++.|+.|++||+++
T Consensus 437 dg~~~~~l~~~~~d~~v~~~d~~~ 460 (814)
T 3mkq_A 437 DRLFSGALLGVKSDGFVYFFDWDN 460 (814)
T ss_dssp CEEECSSSEEEEETTEEEEECTTT
T ss_pred cceecceEEEEecCCEEEEEECCc
Confidence 55 5899999999999999875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=350.25 Aligned_cols=292 Identities=15% Similarity=0.267 Sum_probs=258.5
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.+....+.+|.+.|++++|+||+++||+|+.||+|+|||+.+++ ....+..|...|.+++|+|++++|++++.++ .
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDN---I 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTC---E
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCC---e
Confidence 34567789999999999999999999999999999999999988 4557888999999999999999999999988 5
Q ss_pred EEEEEecCC----ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCe
Q 007229 129 VRAFMWDSG----TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSK 204 (612)
Q Consensus 129 i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 204 (612)
+++|+..++ +....+.+|...|.++.|+|++. +++++.|++|++||+.+++.+..+.+|...|.+++|+|++++
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 677777654 35667889999999999999874 899999999999999999999999999999999999999999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
+++++.|+.|++||+++++....+ .+|...|.+++|+|++++|++++.||.|++||+ ..++.+..+...
T Consensus 199 l~sg~~d~~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~----~~~~~~~~~~~~---- 267 (340)
T 1got_B 199 FVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATCRLFDL----RADQELMTYSHD---- 267 (340)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----TTTEEEEEECCT----
T ss_pred EEEEeCCCcEEEEECCCCeeEEEE---cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC----CCCcEEEEEccC----
Confidence 999999999999999999988888 489999999999999999999999999999998 433322211100
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
+
T Consensus 268 -----------------------------------------------------------------~-------------- 268 (340)
T 1got_B 268 -----------------------------------------------------------------N-------------- 268 (340)
T ss_dssp -----------------------------------------------------------------T--------------
T ss_pred -----------------------------------------------------------------C--------------
Confidence 0
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 269 -------------------------------------------------------------------------------- 268 (340)
T 1got_B 269 -------------------------------------------------------------------------------- 268 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
+...+++++|+|++++|++|+.||.|++||+.+++. ...+.+|.++|.+++|+|++++|++++.|++|++||
T Consensus 269 ----~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 ----IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ----CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE--eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 011478899999999999999999999999988776 677889999999999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=365.88 Aligned_cols=290 Identities=21% Similarity=0.344 Sum_probs=259.7
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
....+.+|..+|++++|+|+++ ++++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 3556789999999999999999 599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCE
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+ .++.++..+..
T Consensus 179 ~~~~~~~~~~---~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~----~~~~~~~~~~~------------------- 232 (410)
T 1vyh_C 179 FQGFECIRTM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV----QTGYCVKTFTG------------------- 232 (410)
T ss_dssp TTSSCEEECC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEET----TTCCEEEEEEC-------------------
T ss_pred CCCCceeEEE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC----CCCcEEEEEeC-------------------
Confidence 9999988887 489999999999999999999999999999998 44433322211
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
|
T Consensus 233 ---------------------------h---------------------------------------------------- 233 (410)
T 1vyh_C 233 ---------------------------H---------------------------------------------------- 233 (410)
T ss_dssp ---------------------------C----------------------------------------------------
T ss_pred ---------------------------C----------------------------------------------------
Confidence 1
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEE
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAI 458 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 458 (612)
...+.++++
T Consensus 234 -----------------------------------------------------------------------~~~v~~~~~ 242 (410)
T 1vyh_C 234 -----------------------------------------------------------------------REWVRMVRP 242 (410)
T ss_dssp -----------------------------------------------------------------------SSCEEEEEE
T ss_pred -----------------------------------------------------------------------CccEEEEEE
Confidence 123667889
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC--------------------CcEEEEEcCCCeE
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--------------------VSMFASADGNREA 518 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~d~~i 518 (612)
+|++++|++|+.|+.|++||+.+++. ...+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 99999999999999999999988876 5678899999999999996 6789999999999
Q ss_pred EEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 519 IVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 519 ~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
++||+.+++.+ ..+.+|...|++++|+|++++|++|+.|+.|++||+.+ + +++..+.+|...|++++|+ ++.+|++
T Consensus 321 ~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~-~~~~~~~~h~~~v~~l~~~~~~~~l~s 397 (410)
T 1vyh_C 321 KMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-K-RCMKTLNAHEHFVTSLDFHKTAPYVVT 397 (410)
T ss_dssp EEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT-S-CCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred EEEECCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-C-ceEEEEcCCCCcEEEEEEcCCCCEEEE
Confidence 99999999887 55778999999999999999999999999999999987 6 7888899999999999999 8889999
Q ss_pred ccCCCeEEEEEec
Q 007229 598 SGEDACIRVWRLA 610 (612)
Q Consensus 598 ~~~d~~i~~w~~~ 610 (612)
++.||+|++|++.
T Consensus 398 gs~D~~i~vW~~r 410 (410)
T 1vyh_C 398 GSVDQTVKVWECR 410 (410)
T ss_dssp EETTSEEEEEC--
T ss_pred EeCCCcEEEEeCC
Confidence 9999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=352.16 Aligned_cols=291 Identities=20% Similarity=0.300 Sum_probs=255.4
Q ss_pred ceeeeeccCCceEEEEEEcCC----CCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECCCCCeEEEEEcC
Q 007229 138 TTVGDFDGHSRRVLSCEFKPT----RPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
.....+.+|.+.|.+++|+|+ +. +|++|+.|++|++|++...+. ...+.+|...|.+++|+|++.++++++.|
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 345567899999999999985 44 699999999999999877654 44688999999999999999999999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
++|++||+++++.+..+. .+...+.+++|+|++++|++++.||.+++|++ .+++....+..
T Consensus 102 ~~i~lWd~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~----~~~~~~~~~~~------------ 162 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSID---AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV----ESGKKEYSLDT------------ 162 (321)
T ss_dssp SEEEEEETTTTEEEEEEE---CCTTCCCCEEECTTSSEEEEECTTSEEEEEET----TTCSEEEEEEC------------
T ss_pred CcEEEEECCCCCEEEEEe---CCCccEEEEEECCCCCEEEEEcCCCcEEEEEc----CCCceeEEecC------------
Confidence 999999999999888873 67788999999999999999999999999998 33322111100
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
T Consensus 163 -------------------------------------------------------------------------------- 162 (321)
T 3ow8_A 163 -------------------------------------------------------------------------------- 162 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
+..
T Consensus 163 -----------------------------------------------------------------------------~~~ 165 (321)
T 3ow8_A 163 -----------------------------------------------------------------------------RGK 165 (321)
T ss_dssp -----------------------------------------------------------------------------SSS
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 012
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
.+.+++|+|++++|++|+.||.|++||+.+++. ...+.+|..+|++++|+|++++|++++.|+.|++||+++++.. .
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-~ 242 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-G 242 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-E
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-E
Confidence 377899999999999999999999999998876 6778899999999999999999999999999999999998876 5
Q ss_pred cccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+.+|...|.+++|+|++++|++++.|++|++||+.+ + +++..+.+|.+.|.+++|+ ++++|++++.||.|++||+.
T Consensus 243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~-~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-R-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-T-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-C-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 6788999999999999999999999999999999998 6 7888999999999999999 88999999999999999974
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-47 Score=361.74 Aligned_cols=310 Identities=17% Similarity=0.263 Sum_probs=267.1
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
...+.+|..+|++++|+|++++||+|+.||+|+|||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~---~i~i 176 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADM---TIKL 176 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTS---CCCE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCCEEEEEeCCC---eEEE
Confidence 45578999999999999999999999999999999999988 5568899999999999999999999999998 5788
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
|+.++++.+..+.+|...|.+++|+|+++ .+++|+.|++|++||+.++.++..+.+|...|.++.|+|++++|++++.|
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 88889999999999999999999999999 59999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
+.|++||+.+++....+ .+|...|.+++|+|++.+.......+. ...
T Consensus 256 ~~v~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~--------------~~~---------------- 302 (410)
T 1vyh_C 256 QTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGS--------------ETK---------------- 302 (410)
T ss_dssp SCEEEEETTTCCEEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSC--------------C------------------
T ss_pred CeEEEEECCCCceeeEe---cCCCceEEEEEEcCcccccchhhhccc--------------ccc----------------
Confidence 99999999999988887 489999999999998754211110000 000
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
.....+.++++|+.|+.|++||+.++........
T Consensus 303 -------------------------------------------~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~--- 336 (410)
T 1vyh_C 303 -------------------------------------------KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--- 336 (410)
T ss_dssp ------------------------------------------------CCEEEEEETTSEEEEEETTTTEEEEEEEC---
T ss_pred -------------------------------------------ccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC---
Confidence 0000167899999999999999887654333221
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
|..
T Consensus 337 -----------------------------------------------------------------------------h~~ 339 (410)
T 1vyh_C 337 -----------------------------------------------------------------------------HDN 339 (410)
T ss_dssp -----------------------------------------------------------------------------CSS
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 334
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
.|++++|+|++++|++|+.||.|++||+.+++. ...+.+|...|++++|+|++++|++|+.|++|++|+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCC--CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 588999999999999999999999999988876 67888999999999999999999999999999999863
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=357.01 Aligned_cols=323 Identities=16% Similarity=0.166 Sum_probs=229.7
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC------cCeEEEeecCCCceee
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV------SGSVRIWGTHNGFVLK 95 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~------d~~i~iwd~~~~~~~~ 95 (612)
..+.+.+++.++...++.....|++.... ...|+..|++++|||||++||+++. |+.|++|+..++....
T Consensus 9 sg~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 9 SGVDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred cCCCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 45667777877777667888999986433 3579999999999999999999997 5566666665553211
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
.......+|...|.+++|+|++. +++++.||+|++|
T Consensus 85 ------------------------------------------~~~~~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lW 120 (357)
T 4g56_B 85 ------------------------------------------SLCTAGVQTEAGVTDVAWVSEKG--ILVASDSGAVELW 120 (357)
T ss_dssp ------------------------------------------GGCSEEEECSSCEEEEEEETTTE--EEEEETTSCEEEC
T ss_pred ------------------------------------------eEecccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEe
Confidence 01112235777788888888874 6678889999999
Q ss_pred eCCCCeeeec----ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC-EE
Q 007229 176 EGPPFKFKLS----HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK-KV 250 (612)
Q Consensus 176 d~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l 250 (612)
|+.+++.... ..+|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+|...|.+++|+|++. ++
T Consensus 121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY---NAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTCSSCE
T ss_pred eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEccCCCcee
Confidence 9988775543 3479999999999999999999999999999999999998888 48999999999999875 78
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
++++.||.|++||+ .+++....+...
T Consensus 198 ~s~~~dg~v~~wd~----~~~~~~~~~~~~-------------------------------------------------- 223 (357)
T 4g56_B 198 LSCGEDGRILLWDT----RKPKPATRIDFC-------------------------------------------------- 223 (357)
T ss_dssp EEEETTSCEEECCT----TSSSCBCBCCCT--------------------------------------------------
T ss_pred eeeccCCceEEEEC----CCCceeeeeeec--------------------------------------------------
Confidence 89999999999998 443322111100
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (357)
T 4g56_B 224 -------------------------------------------------------------------------------- 223 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC-CCeEEEEecCCeEEEEEccCccccccee
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD-GSEAIVGGQNGKLHIYSISGNTLTEEMV 489 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~v~i~d~~~~~~~~~~~ 489 (612)
.+...+++++|+|+ +.+|++|+.|+.|++||+.+++. ...
T Consensus 224 -------------------------------------~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~ 264 (357)
T 4g56_B 224 -------------------------------------ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS--AQT 264 (357)
T ss_dssp -------------------------------------TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG--CEE
T ss_pred -------------------------------------cccccccchhhhhcccceEEEeecccceeEEECCCCcE--eEE
Confidence 01124678899997 46788999999999999998876 678
Q ss_pred eccccCceEEEEEcCCC-cEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecC-CCcEEEEeecCcEEEEEEcc
Q 007229 490 LEKHRGAITVIQYSPDV-SMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP-SSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 490 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~d~~i~iwd~~ 567 (612)
+.+|...|++++|+|++ ++||+++.|++|+|||+++++.+ . ..+|...|++++|+| |+++|++++.|++|++|++.
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~-~-~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF-R-DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE-E-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe-E-ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 88999999999999987 68999999999999999999876 3 346999999999998 89999999999999999998
Q ss_pred CCC
Q 007229 568 KPA 570 (612)
Q Consensus 568 ~~~ 570 (612)
..+
T Consensus 343 ~~~ 345 (357)
T 4g56_B 343 SEG 345 (357)
T ss_dssp ---
T ss_pred CCC
Confidence 744
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=344.19 Aligned_cols=293 Identities=18% Similarity=0.263 Sum_probs=258.8
Q ss_pred ceeeEeccCCCceEEEEECCC----CCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCC
Q 007229 50 LHVEFYGEHGYPVTVARYSPN----GEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d----~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
...+.+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.+++. +...+.+|...|.+++|+|++..+++++.++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 334557799999999999985 67999999999999999987753 3446789999999999999999999999998
Q ss_pred CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCe
Q 007229 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSK 204 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 204 (612)
.+++|+..+++.+..+..|...+.+++|+|+++ .|++++.|+.|++|++++++....+..|...|.+++|+|++++
T Consensus 103 ---~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 103 ---HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp ---EEEEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred ---cEEEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 678888889999999999999999999999999 5999999999999999999999899999999999999999999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
|++++.|+.|++||+++++.+..+ .+|..+|.+++|+|++++|++++.|+.|++||+ ..++....+.
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~----~~~~~~~~~~------ 245 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTL---EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV----QHANLAGTLS------ 245 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE---CCCSSCCCEEEECTTSCEEEEECTTSCEEEEET----TTCCEEEEEC------
T ss_pred EEEEcCCCeEEEEECCCCcEEEEE---cccCCceeEEEEcCCCCEEEEEcCCCeEEEEEC----CCcceeEEEc------
Confidence 999999999999999999988888 489999999999999999999999999999998 3332221110
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
+
T Consensus 246 ----------------------------------------~--------------------------------------- 246 (321)
T 3ow8_A 246 ----------------------------------------G--------------------------------------- 246 (321)
T ss_dssp ----------------------------------------C---------------------------------------
T ss_pred ----------------------------------------C---------------------------------------
Confidence 0
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 247 -------------------------------------------------------------------------------- 246 (321)
T 3ow8_A 247 -------------------------------------------------------------------------------- 246 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
|...|.+++|+|++++|++++.|+.|++||+.+++. ...+.+|.+.|.+++|+|++++|++++.|++|++||..
T Consensus 247 ----h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 247 ----HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC--VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE--EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 122477899999999999999999999999998876 67788999999999999999999999999999999963
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-46 Score=345.31 Aligned_cols=292 Identities=17% Similarity=0.335 Sum_probs=255.8
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeE
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i 129 (612)
+..+.+.+|...|++++|+||+++||+|+.||+|+|||..+++ ....+..|...|.+++|+|+|++|++++.++ .+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~---~i 130 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSGCAIACGGLDN---KC 130 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTSSEEEEESTTS---EE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-cceEEecCCCCEEEEEECCCCCEEEEeeCCC---CE
Confidence 4567789999999999999999999999999999999999887 4457788999999999999999999999998 56
Q ss_pred EEEEecCC------ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECC--C
Q 007229 130 RAFMWDSG------TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP--D 201 (612)
Q Consensus 130 ~i~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~ 201 (612)
.+|.+... .....+.+|...|.+++|+|++. .+++++.|++|++||+++++.+..+.+|...|.+++|+| +
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 77776532 35667788999999999999998 599999999999999999999999999999999999988 5
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
+++|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.|++|++||+ ...+.+..+...
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~----~~~~~~~~~~~~- 281 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYPSGDAFASGSDDATCRLYDL----RADREVAIYSKE- 281 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----TTTEEEEEECCT-
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC----CCCcEEEEEcCC-
Confidence 689999999999999999999998887 489999999999999999999999999999998 332221111000
Q ss_pred ccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 282 SNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.
T Consensus 282 ----------------------------------------------------------~--------------------- 282 (354)
T 2pbi_B 282 ----------------------------------------------------------S--------------------- 282 (354)
T ss_dssp ----------------------------------------------------------T---------------------
T ss_pred ----------------------------------------------------------C---------------------
Confidence 0
Q ss_pred eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecc
Q 007229 362 SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
T Consensus 283 -------------------------------------------------------------------------------- 282 (354)
T 2pbi_B 283 -------------------------------------------------------------------------------- 282 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEE
Q 007229 442 KVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVW 521 (612)
Q Consensus 442 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iw 521 (612)
....+.+++|+|++++|++|+.|+.|++||+.+++. ...+.+|.+.|++++|+|++++|++++.|++|++|
T Consensus 283 -------~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 283 -------IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR--VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp -------CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred -------cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce--EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 001367899999999999999999999999988876 57788999999999999999999999999999999
Q ss_pred e
Q 007229 522 D 522 (612)
Q Consensus 522 d 522 (612)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-46 Score=339.08 Aligned_cols=295 Identities=19% Similarity=0.273 Sum_probs=253.9
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
+....+.+|.+.|.+++|+|+++ ++++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 34567889999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|+.+++.+..+ .+|...|.+++|+|++++|++++.||+|++||+ .++...
T Consensus 83 d~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~----~~~~~~----------------------- 132 (304)
T 2ynn_A 83 NYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW----ENNWAL----------------------- 132 (304)
T ss_dssp ETTTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG----GGTTEE-----------------------
T ss_pred ECCCCcEEEEE---eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC----CCCcch-----------------------
Confidence 99999998888 489999999999999999999999999999998 433211
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
...+.+|...|.+++|++.++..+++|+.|+.|++||+..........
T Consensus 133 ----------------------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~---------- 180 (304)
T 2ynn_A 133 ----------------------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT---------- 180 (304)
T ss_dssp ----------------------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE----------
T ss_pred ----------------------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec----------
Confidence 134567899999999996567899999999999999987544321110
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
..+...+..++
T Consensus 181 ---------------------------------------------------------------------~~~~~~v~~~~ 191 (304)
T 2ynn_A 181 ---------------------------------------------------------------------TGQERGVNYVD 191 (304)
T ss_dssp ---------------------------------------------------------------------CCCTTCEEEEE
T ss_pred ---------------------------------------------------------------------cCCcCcEEEEE
Confidence 01123467777
Q ss_pred Ecc--CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc
Q 007229 458 IAP--DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF 535 (612)
Q Consensus 458 ~s~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 535 (612)
++| ++++|++|+.|+.|++||+++++. ...+.+|...|.+++|+|++++|++++.||+|++||+.+++.+ ..+..
T Consensus 192 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~-~~~~~ 268 (304)
T 2ynn_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNV 268 (304)
T ss_dssp ECCSTTCCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE-EEECC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCCCcc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-eeccC
Confidence 876 788999999999999999998876 6788999999999999999999999999999999999999887 56777
Q ss_pred cccceeEEEecCCCc--EEEEeecCcEEEEEEccC
Q 007229 536 HTARINCLAWSPSST--MVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 536 ~~~~i~~~~~s~~~~--~l~s~~~d~~i~iwd~~~ 568 (612)
|...+.+++|+|++. ++|+|+.|| +.+|++..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 269 GLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp SSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 889999999999875 577777666 88888765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=358.61 Aligned_cols=316 Identities=19% Similarity=0.315 Sum_probs=267.4
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEE
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 117 (612)
+..+..|+..+..+.+.+.+|.+.|++++|+|++++||+|+.||+|+|||+.+++ ....+..|...|.+++|+|+|++|
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTSSEE
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCCCEE
Confidence 4556678888888889999999999999999999999999999999999999987 556888999999999999999999
Q ss_pred EEEeCCCCeeeEEEEEecCC-------ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc----
Q 007229 118 VACGDGKGKSFVRAFMWDSG-------TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH---- 186 (612)
Q Consensus 118 ~~~~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---- 186 (612)
++++.++ .+++|++.+. .....+.+|...|.++.|+|++...|++|+.|++|++||+.+++.+..+
T Consensus 124 as~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 124 ACGGLDS---ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp EECCSSS---CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred EEeeCCC---cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 9999998 4678877642 2445688999999999999986657999999999999999999887765
Q ss_pred -cccccceEEEEECC-CCCeEEEEEcCCcEEEEecC-CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 187 -REHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 187 -~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
.+|...|.+++|+| ++++|++|+.|+.|++||++ .++.+..+ .+|...|.+++|+|++++|++++.||+|++||
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE---CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 67999999999987 88999999999999999997 44566666 48999999999999999999999999999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
+ .+++.+..+.... ..
T Consensus 278 ~----~~~~~~~~~~~~~----------------------------------------------------------~~-- 293 (380)
T 3iz6_a 278 M----RTGHQLQVYNREP----------------------------------------------------------DR-- 293 (380)
T ss_dssp T----TTTEEEEEECCCC----------------------------------------------------------SS--
T ss_pred C----CCCcEEEEecccc----------------------------------------------------------cc--
Confidence 9 6555443332110 00
Q ss_pred EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 344 LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
.+
T Consensus 294 ----~~-------------------------------------------------------------------------- 295 (380)
T 3iz6_a 294 ----ND-------------------------------------------------------------------------- 295 (380)
T ss_dssp ----SC--------------------------------------------------------------------------
T ss_pred ----cc--------------------------------------------------------------------------
Confidence 00
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee----ccccCceEE
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL----EKHRGAITV 499 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~~i~~ 499 (612)
.+...+++++|+|++++|++|+.||.|++||+..++. ...+ .+|.+.|++
T Consensus 296 ------------------------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 296 ------------------------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM--VLNLGTLQNSHEGRISC 349 (380)
T ss_dssp ------------------------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE--EEEECCSCSSCCCCCCE
T ss_pred ------------------------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce--EEEEecccCCCCCceEE
Confidence 0001367899999999999999999999999987765 3333 679999999
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 500 IQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
++|+|++++|++|+.|++|++|++...+.
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 99999999999999999999999987643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=357.34 Aligned_cols=343 Identities=16% Similarity=0.184 Sum_probs=280.2
Q ss_pred CEEEEEeCCCCceeeEeccCCCceEEEEECCCCC-EEEEeeCcCeEEEeec----CCCce-----eeeeeee--------
Q 007229 39 RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGT----HNGFV-----LKNEFKV-------- 100 (612)
Q Consensus 39 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~----~~~~~-----~~~~~~~-------- 100 (612)
..+.+|+++..........|...|++++|+|+++ +||+++.||.|++||+ .+++. ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 3556788877665555566779999999999999 9999999999999999 87762 2223333
Q ss_pred --cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 101 --LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 101 --~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
|...|.+++|+|++++|++++.++ .+.+|+ .+++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENG---ELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVI 179 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTS---CEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETT
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEe-CCCCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECC
Confidence 677999999999999999999987 456666 57888999999999999999999999 59999999999999999
Q ss_pred CCeeeecccccccc---------------eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 179 PFKFKLSHREHSNF---------------VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 179 ~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
+++.+..+..+... +.+++|+|++ .+++++.++.|++||+.+++.+..+ ..|...|.+++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~---~~~~~~i~~~~~ 255 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL---IGHHGPISVLEF 255 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE---CCCSSCEEEEEE
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee---ccCCCceEEEEE
Confidence 99999888887777 9999999986 5888999999999999999888777 378999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
+|++++|++++.||.|++||+ ..++.+..+
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~----~~~~~~~~~---------------------------------------------- 285 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHG----GNGNSQNCF---------------------------------------------- 285 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECS----SSBSCSEEE----------------------------------------------
T ss_pred CCCCCEEEEEcCCCEEEEEEC----CCCccceEe----------------------------------------------
Confidence 999999999999999999998 332211110
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
.+
T Consensus 286 ~~------------------------------------------------------------------------------ 287 (425)
T 1r5m_A 286 YG------------------------------------------------------------------------------ 287 (425)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc
Q 007229 404 DAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT 483 (612)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 483 (612)
+...+.+++|+|++ ++++++.||.|++||+.+++
T Consensus 288 ---------------------------------------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 288 ---------------------------------------------HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp ---------------------------------------------CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred ---------------------------------------------CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 11247788899988 89999999999999998877
Q ss_pred cccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc--------------------eeeeccccccc--cee
Q 007229 484 LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE--------------------VKLNNMLFHTA--RIN 541 (612)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--------------------~~~~~~~~~~~--~i~ 541 (612)
. ...+..|..+|.+++|+|++++|++++.||.|++||+.+++ .+ ..+.+|.. .|+
T Consensus 322 ~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~ 398 (425)
T 1r5m_A 322 L--LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLY-ASYQSSQDNDYIF 398 (425)
T ss_dssp E--EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEE-EEECCTTCCCCEE
T ss_pred E--eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhh-hhhcCcccCCceE
Confidence 6 56777889999999999999999999999999999999887 44 55777866 999
Q ss_pred EEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 542 CLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 542 ~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
+++|+|++++|++++.||.|++||++
T Consensus 399 ~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 399 DLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=340.18 Aligned_cols=284 Identities=18% Similarity=0.255 Sum_probs=254.9
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc--
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-- 92 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-- 92 (612)
.|.+.|.+++|+||+++|++++ |+.|+|||+.+++.+..+..|...|.+++|+|++++||+|+.|+.|++||+.+.+
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 5788999999999999999998 8999999999999999999999999999999999999999999999999998764
Q ss_pred -eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 93 -VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 93 -~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
.....+.+|.+.|.++.|+++++ +++++.++ .+++|+..+++.+..+.+|...|.+++|+|+++ ++++|+.|+.
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~---~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~ 207 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDT---TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDAS 207 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETTE-EEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred ceeEEEecCCCccEEEEEECCCCc-EEEEECCC---cEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCc
Confidence 25567789999999999999886 77888777 578888889999999999999999999999999 5999999999
Q ss_pred EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
|++||+.++.....+.+|...|.+++|+|++++|++++.||+|++||+++++.+..+.. ..+...|.+++|+|++++|+
T Consensus 208 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-DNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEE
T ss_pred EEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEcc-CCcccceEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999888777631 13445799999999999999
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccccee
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 331 (612)
+++.||.|++||+ .+++.+ ..+.+|...|.
T Consensus 287 ~g~~d~~i~vwd~----~~~~~~----------------------------------------------~~~~~h~~~v~ 316 (340)
T 1got_B 287 AGYDDFNCNVWDA----LKADRA----------------------------------------------GVLAGHDNRVS 316 (340)
T ss_dssp EEETTSEEEEEET----TTCCEE----------------------------------------------EEEECCSSCEE
T ss_pred EECCCCeEEEEEc----ccCcEe----------------------------------------------eEeecCCCcEE
Confidence 9999999999998 554433 33456889999
Q ss_pred EEEEEecCCcEEEEEecCCcEEEEE
Q 007229 332 TLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 332 ~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
+++|++ ++.+|++|+.||.|++||
T Consensus 317 ~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 317 CLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEcC-CCCEEEEEcCCccEEecC
Confidence 999983 278999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-46 Score=342.29 Aligned_cols=293 Identities=13% Similarity=0.086 Sum_probs=243.3
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCC-----------CCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 12 CAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLD-----------KPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 12 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~-----------~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
..|..+...|.+++|||||++|++++++++++||.. ..........|...|.+++|+||+ .|++|+.|
T Consensus 24 ~~~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d 102 (344)
T 4gqb_B 24 NAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS 102 (344)
T ss_dssp CSCSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT
T ss_pred CCcccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC
Confidence 345567788999999999999999988777777632 111122233467889999999996 67899999
Q ss_pred CeEEEeecCCCcee---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC
Q 007229 81 GSVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP 157 (612)
Q Consensus 81 ~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (612)
|+|+|||+.+++.+ ...+.+|...|++++|+|+|++|++++.++ .+++|+.++++.+..+.+|...|.+++|+|
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~---~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI---CIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 99999999988753 234558999999999999999999999998 578999999999999999999999999999
Q ss_pred CCCEEEEEeecCCeEEEEeCCCCeeeeccc--ccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 158 TRPFRIATCGEDFLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 158 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
++..++++++.|++|++||+++++....+. .|...+.+++|+|+ +++|++|+.||.|++||+++++.+..+ .+|
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~---~~h 256 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS---AVH 256 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE---ECC
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE---cCC
Confidence 997679999999999999999998877754 45667999999995 567889999999999999999998888 489
Q ss_pred cccEEEEEEecCC-CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 235 HGSIYAVSWSPDG-KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 235 ~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
...|.+++|+|++ ++|++++.|++|++||+ .++++.
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~----~~~~~~--------------------------------------- 293 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDS----SLSELF--------------------------------------- 293 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECT----TCCEEE---------------------------------------
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEEC----CCCcEE---------------------------------------
Confidence 9999999999998 57999999999999998 555432
Q ss_pred CCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
.+.+|...|.+++|++.+..++++++.||+|++|++.+...
T Consensus 294 --------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 294 --------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp --------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred --------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 23469999999999965567888999999999999987543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=333.87 Aligned_cols=296 Identities=18% Similarity=0.259 Sum_probs=252.4
Q ss_pred ceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc
Q 007229 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS 80 (612)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d 80 (612)
|++.+++++. .|.+.|.+++|+||+++|++++ ++.|++||+++++.++.+.+|...|.+++|+|++++|++|+.|
T Consensus 1 ~~l~~~~~~~----~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 76 (304)
T 2ynn_A 1 MKLDIKKTFS----NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD 76 (304)
T ss_dssp -CCCCEEEEE----EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred CcceeEEeec----CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence 5666777665 4678999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcCCC
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
++|++||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|++.++ .....+.+|...|.+++|+|++
T Consensus 77 ~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 77 FRIRVFNYNTGE-KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL---TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp SEEEEEETTTCC-EEEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred CEEEEEECCCCc-EEEEEeCCCCcEEEEEEcCCCCEEEEECCCC---eEEEEECCCCcchhhhhcccCCcEEEEEECCCC
Confidence 999999999998 4557899999999999999999999999998 5788888876 5567789999999999999954
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeeccc-ccccceEEEEECC--CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHR-EHSNFVNCIRFSP--DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
..++++|+.|++|++||+.+......+. +|...+..+.|+| ++++|++++.|++|++||+++++++..+ .+|..
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~---~~h~~ 229 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMS 229 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE---ECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee---CCCCC
Confidence 3379999999999999998877665543 5668899999987 7789999999999999999999998888 48999
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
.|.+++|+|++++|++++.||.|++||+ .+++.+..+
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~----~~~~~~~~~--------------------------------------- 266 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNS----STYKVEKTL--------------------------------------- 266 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEET----TTCCEEEEE---------------------------------------
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEEC----CCCceeeec---------------------------------------
Confidence 9999999999999999999999999999 666665544
Q ss_pred CCCceeecCcccceeEEEEEecCCc-EEEEEecCCcEEEEEcCC
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQ-TILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~ 359 (612)
..|...+.++++++.++. ++++|+.| .+.+|++..
T Consensus 267 -------~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 267 -------NVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp -------CCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred -------cCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 345667788887744344 46666544 466666543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=353.86 Aligned_cols=354 Identities=13% Similarity=0.158 Sum_probs=283.2
Q ss_pred EEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC----CCCe------eeecccc----------c
Q 007229 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG----PPFK------FKLSHRE----------H 189 (612)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~----~~~~------~~~~~~~----------~ 189 (612)
.+|.|+..........|...|.+++|+|+++.+|++++.||.|++||+ .+++ ....+.. |
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (425)
T 1r5m_A 28 SSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107 (425)
T ss_dssp ------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------
T ss_pred ccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCC
Confidence 466666555555556677999999999999834999999999999999 8877 3444433 6
Q ss_pred ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 190 SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 190 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
...|.+++|+|++++|++++.||.|++|| .+++.+..+ ..|...|.+++|+|++++|++++.||.+++||+ .
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~----~ 179 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTILWNV----I 179 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCCEEEEET----T
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec---cCCCccEEEEEECCCCCEEEEEecCCeEEEEEC----C
Confidence 78999999999999999999999999999 677777777 379999999999999999999999999999999 7
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 349 (612)
+++.+..+........ .............+.++.+.+ +..+++++.+
T Consensus 180 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 226 (425)
T 1r5m_A 180 SGTVMQHFELKETGGS-------------------------------SINAENHSGDGSLGVDVEWVD--DDKFVIPGPK 226 (425)
T ss_dssp TTEEEEEECCC----------------------------------------------CCCBSCCEEEE--TTEEEEECGG
T ss_pred CCcEEEEeeccccCcc-------------------------------ceeeccccCCcceeeEEEEcC--CCEEEEEcCC
Confidence 8887776654431100 000011122333477788887 6778999999
Q ss_pred CcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 350 GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 350 g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
|.|++||+..+.......
T Consensus 227 g~i~~~d~~~~~~~~~~~-------------------------------------------------------------- 244 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLI-------------------------------------------------------------- 244 (425)
T ss_dssp GCEEEEETTCSSCSEEEC--------------------------------------------------------------
T ss_pred CeEEEEEcCCCceeeeec--------------------------------------------------------------
Confidence 999999887654322211
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEE
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (612)
.+...+.+++|+|++++|++++.||.|++||+.+++. ...+..|...|.+++|+|++ ++
T Consensus 245 ------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l 303 (425)
T 1r5m_A 245 ------------------GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD-KV 303 (425)
T ss_dssp ------------------CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC--SEEECCCSSCEEEEEEETTT-EE
T ss_pred ------------------cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc--ceEecCCCccEEEEEECCCC-EE
Confidence 1334689999999999999999999999999998876 67778899999999999999 99
Q ss_pred EEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc-----------------
Q 007229 510 ASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS----------------- 572 (612)
Q Consensus 510 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~----------------- 572 (612)
++++.|+.|++||+.+++.+ ..+..|..+|.+++|+|++++|++++.||.|++||+.+ . .
T Consensus 304 ~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~-~~~~~~~~~~~~~~~~~~ 380 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQNTLL-ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK-L-NSKSRSLYGNRDGILNPL 380 (425)
T ss_dssp EEEETTSEEEEEETTTTEEE-EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH-H-HC--------------CE
T ss_pred EEEeCCCcEEEEECCCCcEe-EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC-C-ccceeeeecccccccCcc
Confidence 99999999999999998876 55667899999999999999999999999999999987 4 4
Q ss_pred ---eeeeeccccc--CeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 573 ---RITIKNAHLG--GVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 573 ---~~~~~~~h~~--~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+..+.+|.. .|.+++|+ ++++|++++.||.|++|+++
T Consensus 381 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 381 PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7888999977 99999999 88999999999999999986
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=352.34 Aligned_cols=317 Identities=14% Similarity=0.201 Sum_probs=262.1
Q ss_pred CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
+..+..|+.....+..++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++....+ ..|...|.+++|+|+++
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~---~~h~~~v~~~~~s~~g~ 121 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI---KLHCPWVMECAFAPNGQ 121 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---ECCCTTCCCCEECTTSS
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE---ecCCCCEEEEEECCCCC
Confidence 344556777788888899999999999999999999999999999999999999988888 38899999999999999
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc
Q 007229 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK 328 (612)
Q Consensus 249 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 328 (612)
+|++++.|+.+++|++ ...... .........+.+|..
T Consensus 122 ~las~~~d~~v~iw~~----~~~~~~---------------------------------------~~~~~~~~~~~gh~~ 158 (380)
T 3iz6_a 122 SVACGGLDSACSIFNL----SSQADR---------------------------------------DGNMPVSRVLTGHKG 158 (380)
T ss_dssp EEEECCSSSCCEEEEC----CCCSSC---------------------------------------CCSSTTCCBCCCCSS
T ss_pred EEEEeeCCCcEEEEEC----CCCccc---------------------------------------cCCccceeeccCCCc
Confidence 9999999999999998 322110 011122355778999
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCcccee
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHI 408 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 408 (612)
.+.++.|.+..+..+++++.|++|++||+.+++....... .
T Consensus 159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-----------------------------~---------- 199 (380)
T 3iz6_a 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS-----------------------------E---------- 199 (380)
T ss_dssp CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-----------------------------C----------
T ss_pred ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-----------------------------c----------
Confidence 9999999865577899999999999999987765432210 0
Q ss_pred ccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCc-cccc
Q 007229 409 DVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGN-TLTE 486 (612)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~-~~~~ 486 (612)
....|...+.+++++| +++++++|+.||.|++||++.. ..
T Consensus 200 ------------------------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~-- 241 (380)
T 3iz6_a 200 ------------------------------------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA-- 241 (380)
T ss_dssp ------------------------------------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC--
T ss_pred ------------------------------------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc--
Confidence 0011344688999977 8899999999999999999743 33
Q ss_pred ceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccc-------ccceeEEEecCCCcEEEEeecCc
Q 007229 487 EMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFH-------TARINCLAWSPSSTMVATGSIDT 559 (612)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~s~~~d~ 559 (612)
...+.+|.+.|++++|+|++++|++++.|++|++||+.+++.+. .+..+ ...|++++|+|+|++|++|+.||
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ-VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE-EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE-EecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 57788999999999999999999999999999999999988763 23222 23489999999999999999999
Q ss_pred EEEEEEccCCCcceeeee----cccccCeeeEEEe-cCceEEEccCCCeEEEEEecc
Q 007229 560 CVIIYEIGKPASSRITIK----NAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 560 ~i~iwd~~~~~~~~~~~~----~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
.|++||+.. + +.+..+ .+|.+.|++++|+ ++.+|++|+.|++|++|+++.
T Consensus 321 ~i~vwd~~~-~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 321 DCYVWDTLL-A-EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CEEEEETTT-C-CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CEEEEECCC-C-ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999999987 4 454444 6899999999999 999999999999999999875
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=329.14 Aligned_cols=207 Identities=20% Similarity=0.252 Sum_probs=187.2
Q ss_pred ceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCce----eeeeeeecCCCeEEEEECCCCCEEEEEeCCC
Q 007229 50 LHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFV----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
.+...+.+|.+.|++++|+|++ ++|++|+.|++|++||+..... ....+.+|...|.+++|+|++++|++++.++
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3455689999999999999965 8999999999999999975322 3457889999999999999999999999998
Q ss_pred CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCC---
Q 007229 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPD--- 201 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--- 201 (612)
.+++|+..+++.+..+.+|...|.+++|+|++. ++++|+.|++|++||++ ++.+..+.+|...|.+++|+|+
T Consensus 88 ---~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 88 ---TLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp ---EEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred ---EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence 688888889999999999999999999999999 59999999999999996 4566778899999999999995
Q ss_pred ---CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 202 ---GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 202 ---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+.++++++.|+.|++||+++++....+ .+|...|.+++|+|++++|++++.||.|++||+
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 448999999999999999998888777 489999999999999999999999999999998
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=336.28 Aligned_cols=320 Identities=13% Similarity=0.172 Sum_probs=273.8
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee-
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK- 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~- 95 (612)
.+.|.+++|+|||++++++. ++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 45788999999999999887 56666666655544545568999999999999999999998 9999999998775322
Q ss_pred -eeee--ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 96 -NEFK--VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 96 -~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
..+. .|...|.+++|+|++++|++++.++ .+.+|+.++++ ....+..|...|.+++|+|+++ .+++++.||
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg 163 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDG 163 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSS---EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTS
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCC
Confidence 2222 6889999999999999999999887 57788777766 6777889999999999999999 599999999
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ .+...+.+++|+|+++++
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEE
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----cCCCceEEEEECCCCCEE
Confidence 9999999999999999999999999999999999999999999999999999988887 678889999999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
++++.++.+++||+ ...+... +.
T Consensus 240 ~~~~~~~~i~~~~~----~~~~~~~-----------------------------------------------~~------ 262 (337)
T 1gxr_A 240 AVGMESSNVEVLHV----NKPDKYQ-----------------------------------------------LH------ 262 (337)
T ss_dssp EEEETTSCEEEEET----TSSCEEE-----------------------------------------------EC------
T ss_pred EEEcCCCcEEEEEC----CCCCeEE-----------------------------------------------Ec------
Confidence 99999999999998 2221100 00
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
T Consensus 263 -------------------------------------------------------------------------------- 262 (337)
T 1gxr_A 263 -------------------------------------------------------------------------------- 262 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL 490 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~ 490 (612)
.+...+.+++|+|++++|++++.||.|++||+.+++.. ..
T Consensus 263 -------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~---~~ 302 (337)
T 1gxr_A 263 -------------------------------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---FQ 302 (337)
T ss_dssp -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EE
T ss_pred -------------------------------------CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE---EE
Confidence 01124788999999999999999999999999988762 34
Q ss_pred ccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 491 EKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
..|...|.+++|+|++++|++++.||.|++|++
T Consensus 303 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 558889999999999999999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=333.53 Aligned_cols=300 Identities=16% Similarity=0.184 Sum_probs=235.1
Q ss_pred EEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC----------CceeeeeeeecCCCeEEEEEC
Q 007229 42 LIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN----------GFVLKNEFKVLSGRIDDLQWS 111 (612)
Q Consensus 42 ~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~i~~~~~s 111 (612)
+.|++....+ ..|...|.+++|+|||++|++++ |+++++||... ..........+...|.+++|+
T Consensus 17 r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 17 REWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp ------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred cccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 4677654432 35788899999999999999887 67888887321 011222344577889999999
Q ss_pred CCCCEEEEEeCCCCeeeEEEEEecCCceeee----eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc
Q 007229 112 PDGLRIVACGDGKGKSFVRAFMWDSGTTVGD----FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR 187 (612)
Q Consensus 112 ~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 187 (612)
|++ .|++++.++ .|++|+.++++.+.. +.+|.+.|++++|+|+++ +|++|+.|++|++||+.+++.+..+.
T Consensus 92 ~d~-~l~~~s~dg---~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~ 166 (344)
T 4gqb_B 92 GER-GILVASDSG---AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYR 166 (344)
T ss_dssp TTT-EEEEEETTS---EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCC-eEEEEECCC---EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 986 677888887 688898888775544 458999999999999999 59999999999999999999999999
Q ss_pred ccccceEEEEECCCCC-eEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEee
Q 007229 188 EHSNFVNCIRFSPDGS-KLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 188 ~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~ 265 (612)
+|...|.+++|+|++. +|++++.|++|++||+++++....+... .+...+.+++|+| ++++|++++.||.|++||+
T Consensus 167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~- 244 (344)
T 4gqb_B 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT- 244 (344)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEES-
T ss_pred CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCCcEEEEEC-
Confidence 9999999999999885 6889999999999999999988877422 4566799999998 4567889999999999998
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
.+++++..+. +|
T Consensus 245 ---~~~~~~~~~~----------------------------------------------~h------------------- 256 (344)
T 4gqb_B 245 ---KSTSCVLSSA----------------------------------------------VH------------------- 256 (344)
T ss_dssp ---CC--CCEEEE----------------------------------------------CC-------------------
T ss_pred ---CCCcEEEEEc----------------------------------------------CC-------------------
Confidence 4433322211 11
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCc
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE 425 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (612)
T Consensus 257 -------------------------------------------------------------------------------- 256 (344)
T 4gqb_B 257 -------------------------------------------------------------------------------- 256 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeeccEEEeecccceeeecccceEEEEEEccCC-CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC
Q 007229 426 LALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG-SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
...|++++|+|++ ++|++|+.|++|++||+.++++ ..+.+|.+.|++++|+|
T Consensus 257 ------------------------~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~---~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 257 ------------------------SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL---FRSQAHRDFVRDATWSP 309 (344)
T ss_dssp ------------------------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE---EEECCCSSCEEEEEECS
T ss_pred ------------------------CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE---EEEcCCCCCEEEEEEeC
Confidence 1247788899987 5789999999999999998875 45789999999999999
Q ss_pred CCc-EEEEEcCCCeEEEEecCCcce
Q 007229 505 DVS-MFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 505 ~~~-~l~~~~~d~~i~iwd~~~~~~ 528 (612)
+++ +|++++.|++|++|++.+...
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCeEEEEEcCCCeEEEEECCCCCC
Confidence 886 577999999999999987654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=335.78 Aligned_cols=322 Identities=15% Similarity=0.193 Sum_probs=275.5
Q ss_pred CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
|.+.|.+++|+|||++++++..++.+.+|+........ ....|...|.+++|+|++++|++++ ++ .+++|+.+++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-dg---~i~iw~~~~~ 82 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTRHVYTGG-KG---CVKVWDISHP 82 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECSSSSEEEEEC-BS---EEEEEETTST
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEecCCcEEEEcC-CC---eEEEEECCCC
Confidence 56789999999999999999888888888776655333 4457999999999999999999998 55 5788887765
Q ss_pred cee---eeec--cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEc
Q 007229 138 TTV---GDFD--GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 138 ~~~---~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
+.. ..+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp TCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CceeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 533 3333 7999999999999999 59999999999999999887 56667889999999999999999999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
||.|++||+++++....+ ..|...+.+++|+|+++++++++.||.|++||+ .+++.+..+.
T Consensus 162 dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~~~~~~~~------------ 222 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL----REGRQLQQHD------------ 222 (337)
T ss_dssp TSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET----TTTEEEEEEE------------
T ss_pred CCcEEEEeCCCCceeeee---ecccCceEEEEECCCCCEEEEEecCCcEEEEEC----CCCceEeeec------------
Confidence 999999999999888887 378999999999999999999999999999998 3332221110
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
T Consensus 223 -------------------------------------------------------------------------------- 222 (337)
T 1gxr_A 223 -------------------------------------------------------------------------------- 222 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
+.
T Consensus 223 ------------------------------------------------------------------------------~~ 224 (337)
T 1gxr_A 223 ------------------------------------------------------------------------------FT 224 (337)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 11
Q ss_pred ceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee
Q 007229 451 FTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 530 (612)
..+.+++|+|+++++++++.+|.|++||+.+++. ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe---EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 2467889999999999999999999999998765 5677899999999999999999999999999999999988763
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
...|...|.+++|+|++++|++++.||.|++|++.
T Consensus 302 --~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 302 --QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp --EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred --EecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 33488999999999999999999999999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=339.79 Aligned_cols=291 Identities=14% Similarity=0.120 Sum_probs=239.5
Q ss_pred CCCCCCCceeEEEEccCCCEEEEec-------CCEEEEEeCCCCcee----eEeccCCCceEEEEECCCCCEEEEeeCcC
Q 007229 13 APSTERGRGILISGNPKTDTILYCN-------GRSVLIRYLDKPLHV----EFYGEHGYPVTVARYSPNGEWIASADVSG 81 (612)
Q Consensus 13 ~~~~~~~~v~~~~~s~d~~~l~~~~-------~~~i~i~~~~~~~~~----~~~~~h~~~v~~~~~s~d~~~las~~~d~ 81 (612)
.|..|...|.+++|||||++||+++ ++.|.+|+..++... ....+|...|++++|+|++++| +++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCC
Confidence 3556889999999999999999997 468999998876543 3345799999999999998755 567899
Q ss_pred eEEEeecCCCcee---eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC
Q 007229 82 SVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT 158 (612)
Q Consensus 82 ~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (612)
+|+|||+.+++.+ .....+|...|.+++|+|++++|++++.++ .+++|+.++++.+..+.+|...|.+++|+|+
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF---SVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 9999999987642 223457899999999999999999999998 5788888899999999999999999999999
Q ss_pred CCEEEEEeecCCeEEEEeCCCCeeeecc--cccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
++.++++++.|+.|++||+++++....+ ..|...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+ .+|.
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~ 269 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHS 269 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCS
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccc
Confidence 8767999999999999999998877654 4577789999999974 67889999999999999999988887 4899
Q ss_pred ccEEEEEEecCC-CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 236 GSIYAVSWSPDG-KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 236 ~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
..|.+++|+|++ ++|++++.|++|++||+ .+++.+..
T Consensus 270 ~~v~~l~~sp~~~~~lasgs~D~~i~iwd~----~~~~~~~~-------------------------------------- 307 (357)
T 4g56_B 270 QNITGLAYSYHSSPFLASISEDCTVAVLDA----DFSEVFRD-------------------------------------- 307 (357)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECT----TSCEEEEE--------------------------------------
T ss_pred eeEEEEEEcCCCCCEEEEEeCCCEEEEEEC----CCCcEeEE--------------------------------------
Confidence 999999999987 57899999999999998 66654432
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.+|...|++++|++.++.+|++++.||.|++|++....
T Consensus 308 ---------~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 308 ---------LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ---------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred ---------CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 25889999999996668999999999999999987543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=333.38 Aligned_cols=306 Identities=17% Similarity=0.264 Sum_probs=246.6
Q ss_pred Ceeeeccccccc-ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc
Q 007229 180 FKFKLSHREHSN-FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS 258 (612)
Q Consensus 180 ~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 258 (612)
.+++.++.+|.. .|.+++|+|+|++|++++.|++|++||++++..........+|...|.+++|+|++++|++++.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 345667888987 9999999999999999999999999999888654433223589999999999999999999999999
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI 338 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (612)
+++|++ ..+... ....+.+|...|.+++|++
T Consensus 85 v~iw~~----~~~~~~--------------------------------------------~~~~~~~h~~~v~~v~~sp- 115 (345)
T 3fm0_A 85 TCIWKK----NQDDFE--------------------------------------------CVTTLEGHENEVKSVAWAP- 115 (345)
T ss_dssp EEEEEE----CCC-EE--------------------------------------------EEEEECCCSSCEEEEEECT-
T ss_pred EEEEEc----cCCCeE--------------------------------------------EEEEccCCCCCceEEEEeC-
Confidence 999998 433211 1234567999999999984
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceee
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLS 418 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (612)
++++|++++.|+.|++||+..........
T Consensus 116 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------------------------------------------- 144 (345)
T 3fm0_A 116 SGNLLATCSRDKSVWVWEVDEEDEYECVS--------------------------------------------------- 144 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECTTSCEEEEE---------------------------------------------------
T ss_pred CCCEEEEEECCCeEEEEECCCCCCeEEEE---------------------------------------------------
Confidence 27899999999999999987543211100
Q ss_pred ecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceE
Q 007229 419 LALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAIT 498 (612)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~ 498 (612)
....|...|.+++|+|++++|++++.|+.|++||..++.......+.+|...|+
T Consensus 145 --------------------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 145 --------------------------VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198 (345)
T ss_dssp --------------------------EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred --------------------------EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE
Confidence 000134468999999999999999999999999998877655678899999999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCcc---------------eeeecccccccceeEEEecCCCcEEEEeecCcEEEE
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKE---------------VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII 563 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~i 563 (612)
+++|+|++++|++++.|++|++||..... ++......|...|.+++|+|++..|++++.|+.|++
T Consensus 199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~v 278 (345)
T 3fm0_A 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV 278 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEE
Confidence 99999999999999999999999964321 111112238889999999999999999999999999
Q ss_pred EEccCCCc--c-----eeeeecccccCeeeEEEe-cC-ceEEEccCCCeEEEEEecc
Q 007229 564 YEIGKPAS--S-----RITIKNAHLGGVYGVAFM-DD-FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 564 wd~~~~~~--~-----~~~~~~~h~~~v~~~~~~-~~-~~l~s~~~d~~i~~w~~~~ 611 (612)
|+...... . ......+|...|.+++|+ ++ .+|+|++.||+|++|++.+
T Consensus 279 w~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 279 FQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 99875220 1 122346899999999999 55 4899999999999999975
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=332.66 Aligned_cols=301 Identities=19% Similarity=0.284 Sum_probs=244.9
Q ss_pred CCC-ceeEEEEccCCCEEEEec-CCEEEEEeCCCCcee---eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCC
Q 007229 17 ERG-RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHV---EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 17 ~~~-~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~---~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~ 91 (612)
|.+ .|.+++|+|||++||+++ |+.|+|||++++... ....+|...|++++|+|+|++||+|+.|++|+|||+..+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD 93 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence 444 899999999999999998 899999999987643 224689999999999999999999999999999999876
Q ss_pred ce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC---ceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 92 FV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG---TTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 92 ~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
.. ....+.+|...|.+++|+|++++|++++.++ .+++|+.+.+ +.+..+.+|...|.+++|+|+++ +|++++
T Consensus 94 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s 169 (345)
T 3fm0_A 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK---SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASAS 169 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEE
T ss_pred CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC---eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEe
Confidence 53 4567889999999999999999999999998 5688887755 34677889999999999999999 599999
Q ss_pred cCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC---------------eeeeeec
Q 007229 168 EDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE---------------KIGEFSS 230 (612)
Q Consensus 168 ~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~ 230 (612)
.|+.|++||..+++ +...+.+|...|.+++|+|++++|++++.|++|++||..... ++..+
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL-- 247 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE--
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe--
Confidence 99999999998775 446788999999999999999999999999999999964322 12222
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEE
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISI 310 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 310 (612)
...|...|.+++|+|++..|++++.|+.|++|+.............+
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--------------------------------- 294 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL--------------------------------- 294 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE---------------------------------
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE---------------------------------
Confidence 22388899999999999999999999999999983211111110000
Q ss_pred EEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 311 FSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
......+|...|.+++|++.+..+|++++.||.|++|++..++...
T Consensus 295 --------~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 295 --------TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp --------EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred --------EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 0122357999999999996545799999999999999998876544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-44 Score=327.74 Aligned_cols=295 Identities=15% Similarity=0.250 Sum_probs=252.1
Q ss_pred CCCCCCCceeEEEEccCC-CEEEEec-CCEEEEEeCCC-----CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEE
Q 007229 13 APSTERGRGILISGNPKT-DTILYCN-GRSVLIRYLDK-----PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRI 85 (612)
Q Consensus 13 ~~~~~~~~v~~~~~s~d~-~~l~~~~-~~~i~i~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~i 85 (612)
....|.+.|.+++|+|++ ++|++++ |+.|++|++.. +..+..+.+|...|++++|+|+|++|++|+.|++|+|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 345789999999999976 7888888 89999999864 3346678999999999999999999999999999999
Q ss_pred eecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC-----
Q 007229 86 WGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP----- 160 (612)
Q Consensus 86 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 160 (612)
||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+.+ ++.+..+.+|...|.+++|+|...
T Consensus 92 wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~---~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 92 WDVATGE-TYQRFVGHKSDVMSVDIDKKASMIISGSRDK---TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EETTTTE-EEEEEECCSSCEEEEEECTTSCEEEEEETTS---CEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EECCCCC-eeEEEccCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999998 5568899999999999999999999999998 45666664 677888999999999999999543
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
..+++++.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+ .+...|.+
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~ 242 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL----SAQDEVFS 242 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE----ECCSCEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cCCCcEEE
Confidence 26999999999999999999999999999999999999999999999999999999999999998888 45678999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCc
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAP 320 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 320 (612)
++|+|++.++++++.+ .+++|++ .....+..+.... .
T Consensus 243 ~~~sp~~~~la~~~~~-~i~v~~~----~~~~~~~~~~~~~--------------------------------------~ 279 (319)
T 3frx_A 243 LAFSPNRYWLAAATAT-GIKVFSL----DPQYLVDDLRPEF--------------------------------------A 279 (319)
T ss_dssp EEECSSSSEEEEEETT-EEEEEEE----TTEEEEEEECCCC--------------------------------------T
T ss_pred EEEcCCCCEEEEEcCC-CcEEEEe----CcCeeeeccCccc--------------------------------------c
Confidence 9999999999888755 5999999 6665555443221 0
Q ss_pred eeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 321 LSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 321 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
.....|...+.+++|++ ++++|++|+.||.|++||+.+.
T Consensus 280 ~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 280 GYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEEC
T ss_pred ccccCcCcceeEEEECC-CCCEEEEeecCceEEEEEEeec
Confidence 11234667788899983 2899999999999999998653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=323.60 Aligned_cols=297 Identities=25% Similarity=0.427 Sum_probs=258.0
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
......+.+|...|++++|+|++++||+++.||.|++|++.+++ ....+.+|...|.+++|+|++++|++++.++ .
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDK---T 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTS---E
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCC---E
Confidence 34556688999999999999999999999999999999999887 5567889999999999999999999999998 6
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
+++|+.++++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|+++
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 78888889999999999999999999999999 59999999999999999999999999999999999999999999999
Q ss_pred EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 209 SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
+.||.|++||+.+++.+..+. ..+..++..++|+|++++|++++.||.|++||+ .+++.+..+..+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~~~~~~~~~~-------- 233 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTGH-------- 233 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEET----TTTEEEEEECSS--------
T ss_pred eCCCcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC----CCCcEEEEEEec--------
Confidence 999999999999998887762 356778999999999999999999999999999 555544333211
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
.....
T Consensus 234 --------------------------------------~~~~~------------------------------------- 238 (312)
T 4ery_A 234 --------------------------------------KNEKY------------------------------------- 238 (312)
T ss_dssp --------------------------------------CCSSS-------------------------------------
T ss_pred --------------------------------------CCceE-------------------------------------
Confidence 10000
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 239 -------------------------------------------------------------------------------- 238 (312)
T 4ery_A 239 -------------------------------------------------------------------------------- 238 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc--CCCeEEEEecC
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD--GNREAIVWDRV 524 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~~ 524 (612)
.+......+++++|++|+.||.|++||+.+++. ...+.+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 239 ---~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 239 ---CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI--VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---CCCEEEECSSSCEEEECCTTSCEEEEETTTCCE--EEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ---EEEEEEEeCCCcEEEEECCCCEEEEEECCCchh--hhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 011122335678899999999999999998876 678889999999999999999999986 69999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=329.71 Aligned_cols=286 Identities=17% Similarity=0.243 Sum_probs=255.3
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc-
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF- 92 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~- 92 (612)
..|.+.|.+++|+||+++|++++ |+.|+|||..+++....+..|...|.+++|+|+|++||+++.|+.+++|++....
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 36889999999999999999998 8999999999999999999999999999999999999999999999999986532
Q ss_pred ----eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCC--CCEEEEEe
Q 007229 93 ----VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPT--RPFRIATC 166 (612)
Q Consensus 93 ----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~ 166 (612)
.....+..|...|.+++|+|+++.|++++.++ .+++|+.++++.+..+.+|...|.+++|+|+ ++ ++++|
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~---~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~-~l~sg 216 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG---TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN-TFVSG 216 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC-EEEEE
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC-EEEEE
Confidence 13456788999999999999999999999998 6788888899999999999999999999884 55 69999
Q ss_pred ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC
Q 007229 167 GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 167 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
+.||.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++.++.+..+.. ..+...+.+++|+|+
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLS 295 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTT
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999998887766631 134457899999999
Q ss_pred CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCc
Q 007229 247 GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGH 326 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 326 (612)
+++|++++.|+.|++||+ .+++.+ ..+.+|
T Consensus 296 g~~l~~g~~d~~i~vwd~----~~~~~~----------------------------------------------~~l~~h 325 (354)
T 2pbi_B 296 GRLLFAGYNDYTINVWDV----LKGSRV----------------------------------------------SILFGH 325 (354)
T ss_dssp SSEEEEEETTSCEEEEET----TTCSEE----------------------------------------------EEECCC
T ss_pred CCEEEEEECCCcEEEEEC----CCCceE----------------------------------------------EEEECC
Confidence 999999999999999998 555443 234568
Q ss_pred ccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 327 VKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
...|.+++|++ ++.+|++++.||.|++|+
T Consensus 326 ~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 89999999983 278999999999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=327.92 Aligned_cols=298 Identities=18% Similarity=0.258 Sum_probs=232.4
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC--eeeecc-cc-cccceEEEEECCCCCeEEEEEcCC
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF--KFKLSH-RE-HSNFVNCIRFSPDGSKLISVSSDR 212 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~dg 212 (612)
.+.+..+.+|..+|.+++|+|+ +|++|+.|++|++||+..+ .....+ .+ |...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4567788999999999999998 6999999999999999875 344444 34 999999999999999999999999
Q ss_pred cEEEEecCCC-------CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc
Q 007229 213 KGLIYDGKSG-------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285 (612)
Q Consensus 213 ~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 285 (612)
+|++||++.. +.+..+ .+|...|.+++|+|++++|++++.|++|++||+.......+.+
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~----------- 146 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAII---EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI----------- 146 (330)
T ss_dssp CEEEEEC-------CCCEEEEEE---C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE-----------
T ss_pred cEEEEEcccCcCccccceeEEEE---cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE-----------
Confidence 9999998542 233344 4899999999999999999999999999999981100000000
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
..+.+
T Consensus 147 -----------------------------------~~~~~---------------------------------------- 151 (330)
T 2hes_X 147 -----------------------------------SVLQE---------------------------------------- 151 (330)
T ss_dssp -----------------------------------EEECC----------------------------------------
T ss_pred -----------------------------------EEecc----------------------------------------
Confidence 00000
Q ss_pred ceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccccee
Q 007229 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMS 445 (612)
Q Consensus 366 ~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (612)
T Consensus 152 -------------------------------------------------------------------------------- 151 (330)
T 2hes_X 152 -------------------------------------------------------------------------------- 151 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC--CcEEEEEcCCCeEEEEec
Q 007229 446 KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--VSMFASADGNREAIVWDR 523 (612)
Q Consensus 446 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~iwd~ 523 (612)
|...|.+++|+|++++|++++.|+.|++||..++.......+.+|.+.|.+++|+|+ +.+|++++.|++|++||+
T Consensus 152 ---h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 152 ---HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp ---CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred ---CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 223578899999999999999999999999887644446788999999999999998 779999999999999999
Q ss_pred CCc--------ceeeeccc-ccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCccee-eeeccccc-CeeeEEEec-
Q 007229 524 VSK--------EVKLNNML-FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRI-TIKNAHLG-GVYGVAFMD- 591 (612)
Q Consensus 524 ~~~--------~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~h~~-~v~~~~~~~- 591 (612)
..+ ... ..+. .|...|.+++|++++ +|++++.||.|++||...+..+.. ..+.+|.. .|.+++|++
T Consensus 229 ~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 229 MGDDEDDQQEWVCE-AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEECTTSCEEEEEE-EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred cCCCccccceeEEe-eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence 765 222 2333 389999999999765 899999999999999987321222 33467887 899999983
Q ss_pred --CceEEEccCCCeEEEEEecc
Q 007229 592 --DFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 592 --~~~l~s~~~d~~i~~w~~~~ 611 (612)
+++|++++.||+|++|++++
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEEecCCCcEEEEEecc
Confidence 56899999999999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=328.38 Aligned_cols=304 Identities=21% Similarity=0.318 Sum_probs=240.4
Q ss_pred ceeeeeccCCceEEEEEE-----cC-CCCEEEEEeecCCeEEEEeCCCC-------eeeecccccccceEEEEECCCCCe
Q 007229 138 TTVGDFDGHSRRVLSCEF-----KP-TRPFRIATCGEDFLVNFYEGPPF-------KFKLSHREHSNFVNCIRFSPDGSK 204 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~-----~~-~~~~~l~~~~~d~~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~ 204 (612)
+....+.+|.+.|++++| ++ +++ +|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 345678999999999999 77 777 6999999999999998753 455668899999999999999999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
|++++.|++|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+ .. ......
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~----~~-~~~~~~------- 155 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI----LG-ECKFSS------- 155 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEE---ECCCSCEEEEEECSSTTEEEEEETTSCEEEEES----SS-CEEEEC-------
T ss_pred EEEEcCCCcEEEEECCCCcEEEEE---cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec----cC-Cceeee-------
Confidence 999999999999999999998887 389999999999999999999999999999998 32 111110
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
....+|...+.+++|++....
T Consensus 156 ------------------------------------~~~~~~~~~v~~~~~~~~~~~----------------------- 176 (343)
T 2xzm_R 156 ------------------------------------AEKENHSDWVSCVRYSPIMKS----------------------- 176 (343)
T ss_dssp ------------------------------------CTTTSCSSCEEEEEECCCCCS-----------------------
T ss_pred ------------------------------------ecccCCCceeeeeeecccccc-----------------------
Confidence 001235555555555421000
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 177 -------------------------------------------------------------------------------- 176 (343)
T 2xzm_R 177 -------------------------------------------------------------------------------- 176 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
...+.|.+.++++++.||.|++||.. ... ...+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 177 ----------~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~--~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 177 ----------ANKVQPFAPYFASVGWDGRLKVWNTN-FQI--RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp ----------CSCCCSSCCEEEEEETTSEEEEEETT-TEE--EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred ----------ccccCCCCCEEEEEcCCCEEEEEcCC-Cce--eEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 00123455789999999999999954 333 46788999999999999999999999999999999995
Q ss_pred CcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec-----------ccccCeeeEEEe-cC
Q 007229 525 SKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN-----------AHLGGVYGVAFM-DD 592 (612)
Q Consensus 525 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~h~~~v~~~~~~-~~ 592 (612)
........+. +...|.+++|+|++.+|+++ .|+.|++||+.+.....+..+. +|...|.+++|+ ++
T Consensus 244 ~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 244 NLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321 (343)
T ss_dssp CCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS
T ss_pred CCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC
Confidence 5443323332 55679999999999887755 5777999999873311112332 788899999999 89
Q ss_pred ceEEEccCCCeEEEEEecc
Q 007229 593 FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 593 ~~l~s~~~d~~i~~w~~~~ 611 (612)
++|++|+.||.|++|++++
T Consensus 322 ~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCEEEEETTSEEEEEEEEE
T ss_pred CeEEEecCCceEEEEEEEc
Confidence 9999999999999999976
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=352.90 Aligned_cols=333 Identities=14% Similarity=0.192 Sum_probs=273.9
Q ss_pred CCCceEEEEECCCCC-EEEEe----------eCcCeEEEeecCCCcee-eeeeeecCCCeEEEEECCCCCEEEEEeCCCC
Q 007229 58 HGYPVTVARYSPNGE-WIASA----------DVSGSVRIWGTHNGFVL-KNEFKVLSGRIDDLQWSPDGLRIVACGDGKG 125 (612)
Q Consensus 58 h~~~v~~~~~s~d~~-~las~----------~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 125 (612)
+...|.+++|+|+++ +||++ +.|+.|+|||+.+++.. ......|...|.+++|+|++++|++++.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg- 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNG- 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSS-
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCC-
Confidence 345789999999997 99999 88999999999987531 112235889999999999999999999887
Q ss_pred eeeEEEEEecC----CceeeeeccCCceEEEEEEcCC-CCEEEEEeecCCeEEEEeCCCCe------eeec---cccccc
Q 007229 126 KSFVRAFMWDS----GTTVGDFDGHSRRVLSCEFKPT-RPFRIATCGEDFLVNFYEGPPFK------FKLS---HREHSN 191 (612)
Q Consensus 126 ~~~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~------~~~~---~~~~~~ 191 (612)
.+++|+.+. .+.+..+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++ .... +..|..
T Consensus 90 --~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 90 --SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp --CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred --eEEEeecccccccccchhhccCCccceEEEEEcCCCCC-EEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 467777776 4588899999999999999998 66 69999999999999999886 3333 467999
Q ss_pred ceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccC---CccccEEEEEEecCC-CEEEEEeCCC---cEEEEE
Q 007229 192 FVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSED---GHHGSIYAVSWSPDG-KKVLTVSADK---SAKVWE 263 (612)
Q Consensus 192 ~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~-~~l~~~~~dg---~i~iw~ 263 (612)
.|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.... +|...+.+++|+|++ .++++++.|+ .|++||
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 9999999999 7899999999999999999999888873211 127889999999997 6899999998 999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec-CcccceeEEEEEecCCcE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS-GHVKNVSTLTALKISQQT 342 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 342 (612)
+ ..+. .+...+. +
T Consensus 247 ~----~~~~---------------------------------------------~~~~~~~~~----------------- 260 (416)
T 2pm9_A 247 L----RNAN---------------------------------------------TPLQTLNQG----------------- 260 (416)
T ss_dssp T----TSTT---------------------------------------------SCSBCCCSC-----------------
T ss_pred C----CCCC---------------------------------------------CCcEEeecC-----------------
Confidence 8 3221 0000011 1
Q ss_pred EEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCC
Q 007229 343 ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALS 422 (612)
Q Consensus 343 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (612)
T Consensus 261 -------------------------------------------------------------------------------- 260 (416)
T 2pm9_A 261 -------------------------------------------------------------------------------- 260 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEE
Q 007229 423 SPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQ 501 (612)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~ 501 (612)
+...+.+++|+| ++++|++++.||.|++||+.+++. ...+..|...|.+++
T Consensus 261 --------------------------~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 261 --------------------------HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTK 312 (416)
T ss_dssp --------------------------CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEE
T ss_pred --------------------------ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEE
Confidence 123477889999 899999999999999999998876 677889999999999
Q ss_pred EcCCC-cEEEEEcCCCeEEEEecCCcceeeec----------------------------------ccccccceeEEEec
Q 007229 502 YSPDV-SMFASADGNREAIVWDRVSKEVKLNN----------------------------------MLFHTARINCLAWS 546 (612)
Q Consensus 502 ~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------------------~~~~~~~i~~~~~s 546 (612)
|+|++ .+|++++.|+.|++||+.+....... ...|..++++++|+
T Consensus 313 ~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 392 (416)
T 2pm9_A 313 FAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWA 392 (416)
T ss_dssp ECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEE
T ss_pred ECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEe
Confidence 99998 89999999999999999877643211 11156788899999
Q ss_pred CCCcEEEEeecCcEEEEEEccC
Q 007229 547 PSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 547 ~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|||++||+++.|+.|+||++.+
T Consensus 393 ~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 393 FGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp TTTEEECBCTTSSCBCCBCCCC
T ss_pred eCCeEEEEeCCCCeEEEEEecc
Confidence 9999999999999999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-45 Score=350.76 Aligned_cols=344 Identities=9% Similarity=0.094 Sum_probs=275.9
Q ss_pred CceEEEEEEcCCCCEEEEEe----------ecCCeEEEEeCCCCee---eecccccccceEEEEECCCCCeEEEEEcCCc
Q 007229 147 SRRVLSCEFKPTRPFRIATC----------GEDFLVNFYEGPPFKF---KLSHREHSNFVNCIRFSPDGSKLISVSSDRK 213 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~----------~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 213 (612)
...|.+++|+|+++.+++++ +.|+.|++||+.+++. +..+ .|...|.+++|+|++++|++++.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 35788999999987569999 8899999999998763 3333 58899999999999999999999999
Q ss_pred EEEEecCC----CCeeeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 214 GLIYDGKS----GEKIGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 214 i~vwd~~~----~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
|++||+.+ .+....+ .+|...|.+++|+|+ +++|++++.||.|++||+ ..++.....
T Consensus 91 v~vw~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~----~~~~~~~~~----------- 152 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARF---SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM----NKCTESPSN----------- 152 (416)
T ss_dssp EEEECCSSTTSCCCEEEEC---CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT----TTTSSCTTT-----------
T ss_pred EEEeecccccccccchhhc---cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC----CCCcccccc-----------
Confidence 99999987 3455555 489999999999998 899999999999999999 443310000
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
...........|...+.+++|++..+.++++++.||.|++||+++++.......
T Consensus 153 --------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 206 (416)
T 2pm9_A 153 --------------------------YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY 206 (416)
T ss_dssp --------------------------CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC
T ss_pred --------------------------ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec
Confidence 000011234568889999999965578999999999999999987665433220
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
+.. ...
T Consensus 207 ~~~--------------------------------------------------------------------------~~~ 212 (416)
T 2pm9_A 207 TSP--------------------------------------------------------------------------NSG 212 (416)
T ss_dssp CCC--------------------------------------------------------------------------SSC
T ss_pred ccc--------------------------------------------------------------------------ccc
Confidence 000 000
Q ss_pred ccceEEEEEEccCC-CeEEEEecCC---eEEEEEccCcccccceeec-cccCceEEEEEcC-CCcEEEEEcCCCeEEEEe
Q 007229 449 LGFTVTACAIAPDG-SEAIVGGQNG---KLHIYSISGNTLTEEMVLE-KHRGAITVIQYSP-DVSMFASADGNREAIVWD 522 (612)
Q Consensus 449 ~~~~i~~~~~s~~~-~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd 522 (612)
+...+.+++|+|++ .++++++.|+ .|++||++++.. ....+. +|...|++++|+| ++++|++++.|+.|++||
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 13468999999997 6899999998 999999998632 245666 8999999999999 999999999999999999
Q ss_pred cCCcceeeecccccccceeEEEecCCC-cEEEEeecCcEEEEEEccCCCcceee--------------------------
Q 007229 523 RVSKEVKLNNMLFHTARINCLAWSPSS-TMVATGSIDTCVIIYEIGKPASSRIT-------------------------- 575 (612)
Q Consensus 523 ~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------------- 575 (612)
+.+++.+ ..+.+|...|++++|+|++ .+|++++.|+.|++||+.... ....
T Consensus 292 ~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 292 PESAEQL-SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT-NTLDEQETETKQQESETDFWNNVSREESKE 369 (416)
T ss_dssp SSSCCEE-EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC-CSSCC----------------------CCS
T ss_pred CCCCccc-eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC-CCcccccccccccCCccccccccccccccc
Confidence 9999886 5577799999999999999 899999999999999998733 2111
Q ss_pred --------eecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 576 --------IKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 576 --------~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
....|..++.+++|+ ++++|++++.|+.|++|+++++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 011267788899999 9999999999999999999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=329.91 Aligned_cols=310 Identities=20% Similarity=0.284 Sum_probs=248.9
Q ss_pred EEEeecCCCceee---eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCc-----------
Q 007229 83 VRIWGTHNGFVLK---NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR----------- 148 (612)
Q Consensus 83 i~iwd~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~----------- 148 (612)
..+|+....+... .....|...|.+++|+|||++|++++++ .+++|...+++.+..+..|..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~~~----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 117 (393)
T 1erj_A 42 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK----TTQVYRVSDGSLVARLSDDSAANKDPENLNTS 117 (393)
T ss_dssp EEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBS----CEEEEETTTCCEEEEECC--------------
T ss_pred EEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEcCC----cEEEEEecCCCEEEEecCcccccccccccccc
Confidence 4466555443211 1223699999999999999999998754 378888889988888776542
Q ss_pred -------eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 149 -------RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 149 -------~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
.|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++
T Consensus 118 ~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 118 SSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp ---CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence 499999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEE
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (612)
++....+ .+...+.+++|+| ++++|++++.||.|++||+ .++..+..+....
T Consensus 197 ~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~----~~~~~~~~~~~~~------------------- 249 (393)
T 1erj_A 197 GQCSLTL----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS----ETGFLVERLDSEN------------------- 249 (393)
T ss_dssp TEEEEEE----ECSSCEEEEEECSTTCCEEEEEETTSCEEEEET----TTCCEEEEEC----------------------
T ss_pred CeeEEEE----EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC----CCCcEEEeecccc-------------------
Confidence 9988877 5677899999999 8999999999999999998 5554443321110
Q ss_pred EEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeec
Q 007229 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVE 380 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 380 (612)
....+|
T Consensus 250 --------------------~~~~~h------------------------------------------------------ 255 (393)
T 1erj_A 250 --------------------ESGTGH------------------------------------------------------ 255 (393)
T ss_dssp -----------------------CCC------------------------------------------------------
T ss_pred --------------------cCCCCC------------------------------------------------------
Confidence 000112
Q ss_pred cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 460 (612)
...|.+++|+|
T Consensus 256 ---------------------------------------------------------------------~~~v~~v~~~~ 266 (393)
T 1erj_A 256 ---------------------------------------------------------------------KDSVYSVVFTR 266 (393)
T ss_dssp ---------------------------------------------------------------------SSCEEEEEECT
T ss_pred ---------------------------------------------------------------------CCCEEEEEECC
Confidence 23466777777
Q ss_pred CCCeEEEEecCCeEEEEEccCccc----------ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQNGKLHIYSISGNTL----------TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~~~----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~ 530 (612)
++++|++|+.||.|++||+.+... .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 267 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~- 345 (393)
T 1erj_A 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL- 345 (393)
T ss_dssp TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-
Confidence 777777777788888887764321 123456789999999999999999999999999999999999886
Q ss_pred ecccccccceeEEEecC------CCcEEEEeecCcEEEEEEccC
Q 007229 531 NNMLFHTARINCLAWSP------SSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~------~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..+.+|...|.+++|++ ++++||+|+.||+|+||++..
T Consensus 346 ~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 346 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 56788999999999886 688999999999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=342.45 Aligned_cols=348 Identities=16% Similarity=0.184 Sum_probs=285.2
Q ss_pred eEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee
Q 007229 105 IDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL 184 (612)
Q Consensus 105 i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 184 (612)
+++++|+|++++|++++.++ .+++|+..+++....+..| ..+....|+|+++ +|++++.||.|++||+.+++...
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG---HDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT---EEEEEECCSEETTTTSCSC-CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEE
T ss_pred ccceeeeecCCeEEEEEcCC---cEEEEEecccceeeEEecC-CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceee
Confidence 45789999999999999988 5677777777777777766 5566668899998 59999999999999999999998
Q ss_pred cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.||.|++||+
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE---ECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE---cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 88999999999999999999999999999999999999988888 389999999999999999999999999999999
Q ss_pred ecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE
Q 007229 265 LEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344 (612)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 344 (612)
.+++.+..+.... .|...+.++.+.+.....
T Consensus 211 ----~~~~~~~~~~~~~-------------------------------------------~~~~~v~~~~~~~~~~~~-- 241 (420)
T 3vl1_A 211 ----GTGTTIHTFNRKE-------------------------------------------NPHDGVNSIALFVGTDRQ-- 241 (420)
T ss_dssp ----TTTEEEEEECBTT-------------------------------------------BTTCCEEEEEEEECCCSS--
T ss_pred ----CCCceeEEeecCC-------------------------------------------CCCCCccEEEEecCCcce--
Confidence 7777776654431 255566666665311110
Q ss_pred EEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCC
Q 007229 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424 (612)
Q Consensus 345 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (612)
+
T Consensus 242 -------~------------------------------------------------------------------------ 242 (420)
T 3vl1_A 242 -------L------------------------------------------------------------------------ 242 (420)
T ss_dssp -------C------------------------------------------------------------------------
T ss_pred -------e------------------------------------------------------------------------
Confidence 0
Q ss_pred cEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcC
Q 007229 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP 504 (612)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (612)
...+...+.+++|+|++++|++|+.||.|++||+.+++.. ......|...|++++|+|
T Consensus 243 ---------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 243 ---------------------HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDG 300 (420)
T ss_dssp ---------------------GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE-EEECCTTSSCEEEEEECS
T ss_pred ---------------------eecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee-EEcccccCCCceeEEEeC
Confidence 0001234677889999999999999999999999887652 233456889999999999
Q ss_pred CCc-EEEEEcCCCeEEEEecCCcceeeecccc-cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCc-------ceee
Q 007229 505 DVS-MFASADGNREAIVWDRVSKEVKLNNMLF-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS-------SRIT 575 (612)
Q Consensus 505 ~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~ 575 (612)
+++ +|++++.||.|++||+.+++.....+.. |...|.++.+ |++++|++++.|+.|++|++..+.. ....
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 379 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT 379 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCcc
Confidence 998 9999999999999999998653344544 6778888855 5788999999999999999987320 1233
Q ss_pred eecccccCeeeEEEe-cCc---eEEEccCCCeEEEEEecc
Q 007229 576 IKNAHLGGVYGVAFM-DDF---NVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 576 ~~~~h~~~v~~~~~~-~~~---~l~s~~~d~~i~~w~~~~ 611 (612)
.+..|.+.|.+++|+ ++. .+++++.+|.+.+|+++.
T Consensus 380 ~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 380 FLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 466788999999999 777 788899999999999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=331.90 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=244.8
Q ss_pred CCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCC------------------ceEEEEECCCCCEEEEe
Q 007229 16 TERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY------------------PVTVARYSPNGEWIASA 77 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~------------------~v~~~~~s~d~~~las~ 77 (612)
.|.+.|++++|||||++||+++++.+.+|++.+++.+..+.+|.. .|++++|+|||++||+|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 378899999999999999999999999999999998888876643 39999999999999999
Q ss_pred eCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC
Q 007229 78 DVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP 157 (612)
Q Consensus 78 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (612)
+.|+.|+|||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+..+++....+. +...+.+++|+|
T Consensus 142 ~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~ 216 (393)
T 1erj_A 142 AEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDR---TVRIWDLRTGQCSLTLS-IEDGVTTVAVSP 216 (393)
T ss_dssp ETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEEEEEE-CSSCEEEEEECS
T ss_pred cCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCC---cEEEEECCCCeeEEEEE-cCCCcEEEEEEC
Confidence 999999999999987 5567889999999999999999999999998 67888888888877776 567899999999
Q ss_pred -CCCEEEEEeecCCeEEEEeCCCCeeeecc-------cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe-----
Q 007229 158 -TRPFRIATCGEDFLVNFYEGPPFKFKLSH-------REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK----- 224 (612)
Q Consensus 158 -~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----- 224 (612)
++. ++++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++...
T Consensus 217 ~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 217 GDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp TTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCC-EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 677 6999999999999999998877665 57999999999999999999999999999999976432
Q ss_pred -------eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 225 -------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 225 -------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
...+ .+|...|.+++|+|++++|++++.|+.|++||+ .+++.+.
T Consensus 296 ~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~----~~~~~~~---------------------- 346 (393)
T 1erj_A 296 TPNSGTCEVTY---IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK----KSGNPLL---------------------- 346 (393)
T ss_dssp -----CEEEEE---ECCSSCEEEEEECGGGCEEEEEETTSEEEEEET----TTCCEEE----------------------
T ss_pred CCCCCcceEEE---ecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC----CCCeEEE----------------------
Confidence 2333 378899999999999999999999999999998 6555443
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe-----cCCcEEEEEecCCcEEEEEcCC
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK-----ISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
.+.+|...|.++++.+ +++.+|++|+.||.|++|++..
T Consensus 347 ------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 347 ------------------------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ------------------------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ------------------------EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 3456888899999874 2478999999999999998754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=338.94 Aligned_cols=282 Identities=10% Similarity=0.044 Sum_probs=240.4
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
.+++++|+|+|++|++++ ++.|++||+.+++....+..| ..+....|+|++++||+++.||.|++||+.+++ ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 355899999999999998 899999999988887777766 556666899999999999999999999999887 55566
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
..|...|.+++|+|++++|++++.++ .+++|+.++++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDM---QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECG 211 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCCCCEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETT
T ss_pred ccccCccEEEEECCCCCEEEEEeCCC---eEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECC
Confidence 78999999999999999999999988 678888889999999999999999999999999 59999999999999999
Q ss_pred CCeeeecccc---ccc---------------------ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 179 PFKFKLSHRE---HSN---------------------FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 179 ~~~~~~~~~~---~~~---------------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
+++.+..+.. |.. .+.+++|+|++++|++++.||.|++||+.+++....+ ...|
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~ 289 (420)
T 3vl1_A 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSKF 289 (420)
T ss_dssp TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCTT
T ss_pred CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--cccc
Confidence 9998888764 333 4444556889999999999999999999999888777 3468
Q ss_pred cccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 235 HGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 235 ~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
...|.+++|+|+++ +|++++.||.|++||+ .+++.
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~----~~~~~---------------------------------------- 325 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDL----RSPEC---------------------------------------- 325 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEET----TCTTS----------------------------------------
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEc----CCCcC----------------------------------------
Confidence 89999999999998 9999999999999999 44322
Q ss_pred CCCCCCceeecC-cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 314 SNLDKAPLSFSG-HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 314 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
+...+.+ |...+..+.+.+ +.++++++.||.|++|++...
T Consensus 326 -----~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 326 -----PVGEFLINEGTPINNVYFAA--GALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -----CSEEEEESTTSCEEEEEEET--TEEEEEETTTEEEEEEEECCT
T ss_pred -----chhhhhccCCCCceEEEeCC--CCEEEEecCCccEEEEeccCC
Confidence 1122223 566777776655 789999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=318.39 Aligned_cols=260 Identities=17% Similarity=0.217 Sum_probs=207.8
Q ss_pred CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeee-ee-cCCCeEEEEECCCCCEEEEEeCCC
Q 007229 48 KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEF-KV-LSGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 48 ~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~-~~-~~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
+.++++.+.+|.+.|.+++|+|+ +||+|+.|++|++||+..+.. +...+ .. |...|.+++|+|++++|++++.++
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45667889999999999999998 999999999999999987632 33344 33 999999999999999999999988
Q ss_pred CeeeEEEEEecC-------CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC----Ceeeecccccccce
Q 007229 125 GKSFVRAFMWDS-------GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP----FKFKLSHREHSNFV 193 (612)
Q Consensus 125 ~~~~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~----~~~~~~~~~~~~~v 193 (612)
.+++|+.+. .+.+..+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+++..+.+|...|
T Consensus 81 ---~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 81 ---TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ---CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred ---cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 567777642 356778899999999999999999 599999999999999943 35567788999999
Q ss_pred EEEEECCCCCeEEEEEcCCcEEEEecCCC--CeeeeeeccCCccccEEEEEEecC--CCEEEEEeCCCcEEEEEeecCCC
Q 007229 194 NCIRFSPDGSKLISVSSDRKGLIYDGKSG--EKIGEFSSEDGHHGSIYAVSWSPD--GKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
.+++|+|++++|++++.|++|++||..++ +++..+ .+|...|.+++|+|+ +.+|++++.|++|++|++.....
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL---NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc---cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 99999999999999999999999998876 455555 489999999999998 67899999999999999832111
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec-CcccceeEEEEEecCCcEEEEEec
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS-GHVKNVSTLTALKISQQTILSSSY 348 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 348 (612)
..... | .....+. .|...|.+++|++ +..+++++.
T Consensus 234 ~~~~~------------------------------------~------~~~~~~~~~h~~~v~~v~~s~--~~~l~s~~~ 269 (330)
T 2hes_X 234 DDQQE------------------------------------W------VCEAILPDVHKRQVYNVAWGF--NGLIASVGA 269 (330)
T ss_dssp TSCEE------------------------------------E------EEEEECCSCCSSCEEEEEECT--TSCEEEEET
T ss_pred cccce------------------------------------e------EEeeecccccccceEEEEEcC--CCEEEEEeC
Confidence 00000 0 0011222 3888999999985 568999999
Q ss_pred CCcEEEEEcCCc
Q 007229 349 DGAIIKWIRGVG 360 (612)
Q Consensus 349 dg~i~~wd~~~~ 360 (612)
||.|++||...+
T Consensus 270 dg~v~iw~~~~~ 281 (330)
T 2hes_X 270 DGVLAVYEEVDG 281 (330)
T ss_dssp TSCEEEEEEETT
T ss_pred CCEEEEEEcCCC
Confidence 999999987654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=318.96 Aligned_cols=298 Identities=16% Similarity=0.233 Sum_probs=240.8
Q ss_pred CCCCCCCceeEEEE-----cc-CCCEEEEec-CCEEEEEeCCCC-------ceeeEeccCCCceEEEEECCCCCEEEEee
Q 007229 13 APSTERGRGILISG-----NP-KTDTILYCN-GRSVLIRYLDKP-------LHVEFYGEHGYPVTVARYSPNGEWIASAD 78 (612)
Q Consensus 13 ~~~~~~~~v~~~~~-----s~-d~~~l~~~~-~~~i~i~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~las~~ 78 (612)
....|.+.|++++| +| |+++|++++ |+.|++||+.++ .....+.+|...|.+++|+|++++|++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 34468899999999 77 999999998 899999999753 34567899999999999999999999999
Q ss_pred CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee---ccCCceEEEEEE
Q 007229 79 VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF---DGHSRRVLSCEF 155 (612)
Q Consensus 79 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~ 155 (612)
.|++|++||+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+... ...... .+|...|.+++|
T Consensus 96 ~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~---~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 96 WDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQILSAGAER---EIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp TTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTTEEEEEETTS---CEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred CCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCCEEEEEcCCC---EEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999988 5567889999999999999999999999988 467776653 333333 379999999999
Q ss_pred cCCC----------CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCe
Q 007229 156 KPTR----------PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEK 224 (612)
Q Consensus 156 ~~~~----------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~ 224 (612)
+|++ + ++++++.|+.|++|| ...+....+.+|...|.+++|+|++++|++++.|+.|++||+.. ...
T Consensus 171 ~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 171 SPIMKSANKVQPFAP-YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp CCCCCSCSCCCSSCC-EEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred ccccccccccCCCCC-EEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 9987 5 599999999999999 45667778889999999999999999999999999999999944 444
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (612)
...+ .+...|.+++|+|+++++++ +.|+.+++|++ .+++.........
T Consensus 249 ~~~~----~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~----~~~~~~~~~~~~~----------------------- 296 (343)
T 2xzm_R 249 QREF----DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNL----MTQSKAPVCTIEA----------------------- 296 (343)
T ss_dssp SEEE----ECSSCEEEEEECSSSCEEEE-EESSCEEEEES----SSCCSCSEEECCC-----------------------
T ss_pred ceee----cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEe----CCCCCCceEEeec-----------------------
Confidence 4444 35567999999999987765 46788999999 5544332111110
Q ss_pred CCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
..........+|...+.+++|++. ++.|++|+.||.|++|+++++
T Consensus 297 ----------~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 297 ----------EPITKAEGQKGKNPQCTSLAWNAL-GKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ----------CSGGGBTTBCCSCCCEEEEEECSS-SCCEEEEETTSEEEEEEEEEE
T ss_pred ----------CcchhhhhhcCCCCceEEEEECCC-CCeEEEecCCceEEEEEEEcc
Confidence 000011223468889999999832 789999999999999998654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=312.25 Aligned_cols=285 Identities=17% Similarity=0.260 Sum_probs=249.1
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
..|.+.|.+++|+|+|++|++++ ++.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~- 98 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK- 98 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-
Confidence 46788999999999999999998 8999999999999999999999999999999999999999999999999999988
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
....+.+|...|.+++|+|++++|++++.++ .+++|+..+++.+..+..|..+|.+++|+|+++ ++++++.|+.|+
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~ 174 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCR 174 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEE
Confidence 5567889999999999999999999999988 578888889999999999999999999999999 599999999999
Q ss_pred EEeCCCCeeeecc-cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc---EEEEEEecCCCE
Q 007229 174 FYEGPPFKFKLSH-REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS---IYAVSWSPDGKK 249 (612)
Q Consensus 174 ~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~i~~~~~~~~ 249 (612)
+||+.+++.+..+ ..+..++.+++|+|++++|++++.|+.|++||+.+++.+..+. +|... +......+++++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT---GHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC---SSCCSSSCCCEEEECSSSCE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE---ecCCceEEEEEEEEeCCCcE
Confidence 9999998877765 4566789999999999999999999999999999999888773 44433 222333467889
Q ss_pred EEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccc
Q 007229 250 VLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKN 329 (612)
Q Consensus 250 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 329 (612)
|++++.||.|++||+ .+++.+. .+.+|...
T Consensus 252 l~sg~~dg~i~vwd~----~~~~~~~----------------------------------------------~~~~h~~~ 281 (312)
T 4ery_A 252 IVSGSEDNLVYIWNL----QTKEIVQ----------------------------------------------KLQGHTDV 281 (312)
T ss_dssp EEECCTTSCEEEEET----TTCCEEE----------------------------------------------EECCCSSC
T ss_pred EEEECCCCEEEEEEC----CCchhhh----------------------------------------------hhhccCCc
Confidence 999999999999999 6555443 34568888
Q ss_pred eeEEEEEecCCcEEEEEe--cCCcEEEEEcC
Q 007229 330 VSTLTALKISQQTILSSS--YDGAIIKWIRG 358 (612)
Q Consensus 330 v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~ 358 (612)
|.++++++. +..+++++ .|+.|++|+.+
T Consensus 282 v~~~~~~p~-~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 282 VISTACHPT-ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECSS-SSEEEEEECTTTCCEEEEECC
T ss_pred EEEEeecCc-CCceEEEEccCCccEEEecCC
Confidence 999998842 67888876 69999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=340.89 Aligned_cols=349 Identities=9% Similarity=-0.005 Sum_probs=244.6
Q ss_pred cCCCeEEEEECCCC---------CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 101 LSGRIDDLQWSPDG---------LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 101 ~~~~i~~~~~s~~~---------~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
+.+.|.+++|+|++ ++||+++.+... -..+|+++ ++++++.|++
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~-~laS~s~D~t 184 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE-MFDKEKHSSC 184 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------------CEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh-hhccCCCCce
Confidence 67899999999987 788887755310 01368888 6999999999
Q ss_pred EEEEeCCCCeee----ecccccccceEEEEECCC------CCeEEEEEcCCcEEEEecCCCCeee--------eeeccCC
Q 007229 172 VNFYEGPPFKFK----LSHREHSNFVNCIRFSPD------GSKLISVSSDRKGLIYDGKSGEKIG--------EFSSEDG 233 (612)
Q Consensus 172 i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~~~~~--------~~~~~~~ 233 (612)
|++||+.+++.. ..+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++... ......+
T Consensus 185 I~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~ 264 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL 264 (524)
T ss_dssp EEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC
T ss_pred EEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc
Confidence 999998877642 345677889999999997 5799999999999999998765320 0011247
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
|...|.+++|++++ .|++|+.||+|++||+ .++.
T Consensus 265 h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~----~~~~----------------------------------------- 298 (524)
T 2j04_B 265 ADSLITTFDFLSPT-TVVCGFKNGFVAEFDL----TDPE----------------------------------------- 298 (524)
T ss_dssp TTTCEEEEEESSSS-EEEEEETTSEEEEEET----TBCS-----------------------------------------
T ss_pred CCCCEEEEEecCCC-eEEEEeCCCEEEEEEC----CCCC-----------------------------------------
Confidence 88999999999864 7999999999999998 3221
Q ss_pred CCCCCCceeecCcccceeEEEEE-ecCC-cEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 314 SNLDKAPLSFSGHVKNVSTLTAL-KISQ-QTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 314 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
.+...+.+|...|.++++. ++++ .+|++++.|++|++||+++++.......|.
T Consensus 299 ----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------------------- 353 (524)
T 2j04_B 299 ----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------------------- 353 (524)
T ss_dssp ----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC---------------------
T ss_pred ----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc---------------------
Confidence 1223456799999999643 4445 799999999999999988765432211000
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 471 (612)
....+.+++|+|+++.+++++.|
T Consensus 354 ---------------------------------------------------------~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 354 ---------------------------------------------------------RGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp ---------------------------------------------------------SCCSCCCEEEETTTTEEEEECSS
T ss_pred ---------------------------------------------------------ccCcccceEeCCCcCeEEEeCCC
Confidence 00136789999999999999999
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc-----cccceeEEEec
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF-----HTARINCLAWS 546 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~s 546 (612)
++|++||++++.. ...+.+|.+.|++++|+|++++|++|+.|++|++||+..+.. ..... +...+.+++|+
T Consensus 377 ~tv~lwd~~~~~~--~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~--~~~~~~~~~~~~~~v~~v~~s 452 (524)
T 2j04_B 377 SSLRAVPSRAAFA--VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL--HGIKNSSATQKSLRLWKWDYS 452 (524)
T ss_dssp SEEEEEETTCTTC--CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT--TCC------CCCCEEEECBCC
T ss_pred CcEEEEECccccc--ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc--cccccCccceeeeEEEEeccC
Confidence 9999999998765 567889999999999999999999999999999999866422 11111 12257899999
Q ss_pred CCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cC---ceEEEccCCCeEEEEEeccC
Q 007229 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DD---FNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 547 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~---~~l~s~~~d~~i~~w~~~~~ 612 (612)
|+++.+.. . | .+++|+....+ .++..+.+|...|.+++|+ ++ ..+++|+.||.|+||++.-|
T Consensus 453 p~g~~~~~-~-~-~~~~~~~~~~g-~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 453 IKDDKYRI-D-S-SYEVYPLTVND-VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp SSSCEEEE-C-C-CCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCCeEEc-c-C-CceecccccCC-cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 99985532 2 2 24445443224 6778899999999999999 54 37999999999999999754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-41 Score=313.59 Aligned_cols=313 Identities=19% Similarity=0.243 Sum_probs=251.2
Q ss_pred EEEEEeCC--CCceeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCce----eeeeeeecCCCeEEEEECC
Q 007229 40 SVLIRYLD--KPLHVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFV----LKNEFKVLSGRIDDLQWSP 112 (612)
Q Consensus 40 ~i~i~~~~--~~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~s~ 112 (612)
.++++... +.++..+|+||.+.|++++|+|+ +++||||+.|++|+|||+.+.+. ....+.+|...|.+++|+|
T Consensus 17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 34444443 33455679999999999999997 68999999999999999987653 3456788999999999999
Q ss_pred CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-eccccccc
Q 007229 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-LSHREHSN 191 (612)
Q Consensus 113 ~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~ 191 (612)
++++|++++.++ .+.+|.............+...+..+.++++++ .+++++.|+.+++||....... ....+|..
T Consensus 97 dg~~l~s~~~d~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 97 DGQFALSGSWDG---TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp TSSEEEEEETTS---EEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred CCCEEEEEcccc---cceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 999999999998 577788888888888899999999999999999 5999999999999998766543 44678999
Q ss_pred ceEEEEECCCC--CeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 192 FVNCIRFSPDG--SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 192 ~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
.+..++|++++ .++++++.|+.|++||+++++....+ .+|..+|.+++|+|++++|++++.||.|++||+ .
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~----~ 245 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH---IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL----N 245 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTCEEEEEET----T
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe---cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe----c
Confidence 99999999865 47889999999999999999988887 489999999999999999999999999999999 6
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 349 (612)
+.+.+..+. +...+..+.+++ +..+++++.|
T Consensus 246 ~~~~~~~~~-----------------------------------------------~~~~v~~~~~~~--~~~~~~~~~d 276 (340)
T 4aow_A 246 EGKHLYTLD-----------------------------------------------GGDIINALCFSP--NRYWLCAATG 276 (340)
T ss_dssp TTEEEEEEE-----------------------------------------------CSSCEEEEEECS--SSSEEEEEET
T ss_pred cCceeeeec-----------------------------------------------CCceEEeeecCC--CCceeeccCC
Confidence 666655443 234677777876 5667788889
Q ss_pred CcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 350 GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 350 g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
+.|++||+++...........
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~----------------------------------------------------------- 297 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEV----------------------------------------------------------- 297 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC------------------------------------------------------------
T ss_pred CEEEEEECCCCeEEEeccccc-----------------------------------------------------------
Confidence 999999988765543322000
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT 483 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 483 (612)
.......+...|++++|+||+++|++|+.||.|+|||+++|.
T Consensus 298 ------------~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 298 ------------ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ------------eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 000011244579999999999999999999999999999875
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=323.98 Aligned_cols=346 Identities=18% Similarity=0.260 Sum_probs=271.8
Q ss_pred eeeeeccCCceE-EEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 139 TVGDFDGHSRRV-LSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 139 ~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
....+.+|...+ .++.|+ ++ ++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ +|++++.||+|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 456788998875 666664 44 69999999999999999999999999999999999999988 89999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEe--cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWS--PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
|+++++.+..+ .+|...|.+++|+ ++++++++++.||.|++||+ ...............
T Consensus 189 d~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~----~~~~~~~~~~~~~~~------------ 249 (464)
T 3v7d_B 189 DIKKGCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL----PKESSVPDHGEEHDY------------ 249 (464)
T ss_dssp ETTTTEEEEEE---CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEEC----CCCCCC------CCS------------
T ss_pred ECCCCcEEEEE---CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeC----CCCcccccccccCCc------------
Confidence 99999988888 4799999999999 47899999999999999999 554433322211100
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
................+.+|...+.++... +..+++++.||.|++||+.+++......
T Consensus 250 -----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~-------- 307 (464)
T 3v7d_B 250 -----------PLVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVAQMKCLYILS-------- 307 (464)
T ss_dssp -----------SEEESCGGGCTTEEEEECCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEEC--------
T ss_pred -----------ceEeeccCCCeEEEEEccCccceEEEEcCC---CCEEEEEeCCCeEEEEECCCCcEEEEec--------
Confidence 000000011122234556677777766433 6788888888888888877654432211
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
.+...+.+
T Consensus 308 ------------------------------------------------------------------------~~~~~v~~ 315 (464)
T 3v7d_B 308 ------------------------------------------------------------------------GHTDRIYS 315 (464)
T ss_dssp ------------------------------------------------------------------------CCSSCEEE
T ss_pred ------------------------------------------------------------------------CCCCCEEE
Confidence 13446899
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF 535 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 535 (612)
++|+|+++++++|+.||.|++||+.+++. ...+.+|...|.+++|+ +++|++++.||.|++||+.++..... . .
T Consensus 316 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~-~-~ 389 (464)
T 3v7d_B 316 TIYDHERKRCISASMDTTIRIWDLENGEL--MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-Y-H 389 (464)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-E-E
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee-e-c
Confidence 99999999999999999999999998876 67888999999999997 57999999999999999999876533 2 3
Q ss_pred cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceee-eecccccCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRIT-IKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 536 ~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
|...+..++|+|++++|++++ |+.|++||+++ + +.+. .+..|...|.+++|+++..+++++.||.+.+|-++
T Consensus 390 ~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~-g-~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 390 HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS-G-KLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT-C-CEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CCCCccEEEEEeCCCEEEEec-CCeEEEEECCC-C-cEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence 677888999999999999998 89999999998 5 5554 47789999999999866667777788887777654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=321.28 Aligned_cols=328 Identities=17% Similarity=0.262 Sum_probs=275.9
Q ss_pred CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee
Q 007229 48 KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS 127 (612)
Q Consensus 48 ~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 127 (612)
..+....+.+|.+.|.. +++++|++||+|+.||+|++||+.+++ ....+.+|...|.+++|+ +..|++++.++
T Consensus 107 ~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg--- 179 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMR--DNIIISGSTDR--- 179 (445)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEE--TTEEEEEETTS---
T ss_pred CcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc-EEEEEcCCCCCEEEEEec--CCEEEEEeCCC---
Confidence 34456678899987533 355678999999999999999999998 556788999999999997 56999999988
Q ss_pred eEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEE
Q 007229 128 FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 128 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
.+++|++++++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+++.+..+.+|...|.+++| +++++++
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEecCC---EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE
Confidence 5788988899999999999999999999754 5999999999999999999999999999999999999 6889999
Q ss_pred EEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
++.||.|++||+++++.+..+ .+|...|.+++| +++++++++.||.|++||+ .+++.+..+
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~----~~~~~~~~~---------- 315 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTL---QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV----ETGNCIHTL---------- 315 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEE---CCCSSCEEEEEE--CSSEEEEEETTSCEEEEET----TTCCEEEEE----------
T ss_pred EcCCCEEEEEECCCCcEeEEe---cCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC----CCCCEEEEE----------
Confidence 999999999999999988888 378999999999 7899999999999999999 666554433
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
.+|...+.++.+. ++.+++++.||.|++||+.+++......
T Consensus 316 ------------------------------------~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 316 ------------------------------------TGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp ------------------------------------CCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ------------------------------------cCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 3466667776664 6799999999999999987765433321
Q ss_pred ecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee
Q 007229 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI 447 (612)
Q Consensus 368 ~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (612)
.+ .
T Consensus 357 ~~-----------------------------------------------------------------------------~ 359 (445)
T 2ovr_B 357 GP-----------------------------------------------------------------------------N 359 (445)
T ss_dssp ST-----------------------------------------------------------------------------T
T ss_pred cC-----------------------------------------------------------------------------C
Confidence 00 0
Q ss_pred cccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceee-----ccccCceEEEEEcCCCcEEEEEcCCCe----E
Q 007229 448 DLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL-----EKHRGAITVIQYSPDVSMFASADGNRE----A 518 (612)
Q Consensus 448 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~d~~----i 518 (612)
.+...|++++|+ ++++++|+.||.|++||+.+++. ...+ ..|.+.|.+++|+|++.++|+++.||+ +
T Consensus 360 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 123468888885 57999999999999999998876 3444 478899999999999999999999997 9
Q ss_pred EEEecCCc
Q 007229 519 IVWDRVSK 526 (612)
Q Consensus 519 ~iwd~~~~ 526 (612)
.+||+...
T Consensus 436 ~v~df~~~ 443 (445)
T 2ovr_B 436 LVLDFDVD 443 (445)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-42 Score=330.67 Aligned_cols=372 Identities=12% Similarity=0.098 Sum_probs=275.0
Q ss_pred EEEccCCCEEEEecCCEEEEEeCCCCceeeEe-ccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCC---Cceee-ee
Q 007229 24 ISGNPKTDTILYCNGRSVLIRYLDKPLHVEFY-GEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHN---GFVLK-NE 97 (612)
Q Consensus 24 ~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~---~~~~~-~~ 97 (612)
..|+|+++.++.+. .|+ .+++.+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +.... ..
T Consensus 33 ~~f~~~~~~~~~~~-----~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 33 KEFGPIQEIVRSPN-----MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGGCCCCCCCCCCC-----GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hhcCCccccccccc-----ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 34788888888765 487 446777777 89999999999999 999999999999999999987 43221 12
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeeecc------------CCceEEEEE--EcCCCC
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDFDG------------HSRRVLSCE--FKPTRP 160 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~ 160 (612)
...|...|.+++|+|++++|++++.++ .+++|+.+ .++.+..+.+ +...+.++. ++|++.
T Consensus 107 ~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFDAFAVSSKDG---QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTS---EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred eccCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 226999999999999999999999998 67888874 5555544433 445555555 456777
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccc--cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 238 (612)
++++++.|+.|++||+++++.+..+.+ |...|.+++|+|++++|++++.||.|++||+++++.+..+. ..|..+|
T Consensus 184 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v 260 (437)
T 3gre_A 184 -LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS--FGDHAPI 260 (437)
T ss_dssp -EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB--CTTCEEE
T ss_pred -EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe--cCCCCce
Confidence 699999999999999999999999888 89999999999999999999999999999999998888762 2677799
Q ss_pred EEEEEec----CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 239 YAVSWSP----DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 239 ~~i~~~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
.+++|+| ++++|++++.||.|++||+ .+++.+..+..+.... ....+...
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~~~~~-----~~~~~~~~----------------- 314 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNF----VKGHCQYAFINSDEQP-----SMEHFLPI----------------- 314 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEET----TTTEEEEEEESSSSCC-----CGGGGSCB-----------------
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEc----CCCcEEEEEEcCCCCC-----ccceeccc-----------------
Confidence 9996654 6889999999999999999 8888888877553211 11111100
Q ss_pred CCCCCceeecC--cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 315 NLDKAPLSFSG--HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 315 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
........+.+ |...|.++++++ +.++++++.||.|++||+.+++.......+...
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-------------------- 372 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRF-------------------- 372 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--C--------------------
T ss_pred ccccccceecccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEeccccc--------------------
Confidence 00001112344 889999999994 789999999999999999887655443321110
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG 472 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 472 (612)
...+....++++..+++..
T Consensus 373 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~---- 391 (437)
T 3gre_A 373 ---------------------------------------------------------SDVFIPTQVTANLTMLLRK---- 391 (437)
T ss_dssp ---------------------------------------------------------CCEEEEEEEETTEEEEEEE----
T ss_pred ---------------------------------------------------------CceEEEEEeecceEEEEEe----
Confidence 1123445555555544443
Q ss_pred eEEEEEccCcccccceeeccccCceEEEEEcCC--CcEEEEEcCCCeEEEEe
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--VSMFASADGNREAIVWD 522 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~iwd 522 (612)
++...... ......|...|++++|+++ +.+|++++.||.|+||+
T Consensus 392 ----~~~~~~~~--~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 ----MKRTSTHS--VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ----cccccccc--cCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22222222 2445679999999999998 88999999999999995
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-43 Score=337.24 Aligned_cols=341 Identities=11% Similarity=0.093 Sum_probs=242.1
Q ss_pred CCceeEEEEccCC---------CEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 18 RGRGILISGNPKT---------DTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 18 ~~~v~~~~~s~d~---------~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.+.|.+++|+|++ ++||++..... . -..+|+++++|+++.|++|+|||+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~-------~---------------~~~~~~~~~laS~s~D~tI~iWd~ 190 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM-------D---------------EPLNEHLEMFDKEKHSSCIQIFKM 190 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------CEEEEEEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEeccc-------C---------------CccchhhhhhccCCCCceEEEEEc
Confidence 5688999999987 78888872210 0 013799999999999999999999
Q ss_pred CCCcee---eeeeeecCCCeEEEEECCC------CCEEEEEeCCCCeeeEEEEEecCCc-----------eeeeeccCCc
Q 007229 89 HNGFVL---KNEFKVLSGRIDDLQWSPD------GLRIVACGDGKGKSFVRAFMWDSGT-----------TVGDFDGHSR 148 (612)
Q Consensus 89 ~~~~~~---~~~~~~~~~~i~~~~~s~~------~~~l~~~~~~~~~~~i~i~~~~~~~-----------~~~~~~~~~~ 148 (612)
.+++.. ...+.+|.+.|..++|+|+ +.+||+++.++ .+++|+.+.++ +...+.+|..
T Consensus 191 ~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg---tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~ 267 (524)
T 2j04_B 191 NTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG---TINFLEIIDNATDVHVFKMCEKPSLTLSLADS 267 (524)
T ss_dssp ETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS---CEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred cCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC---eEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence 887632 2346678899999999997 57999999998 57888887553 2346789999
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe-eeecccccccceEEE--EECCCC-CeEEEEEcCCcEEEEecCCCCe
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSNFVNCI--RFSPDG-SKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
.|++++|+|++ .|++|+.||+|++||++++. ....+.+|...|.++ +|+|++ ++|++++.|++|++||+++++.
T Consensus 268 ~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 268 LITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp CEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred CEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 99999999865 59999999999999999764 344578999999999 578888 8999999999999999998877
Q ss_pred eeeeeccCCcc--ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE
Q 007229 225 IGEFSSEDGHH--GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV 302 (612)
Q Consensus 225 ~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (612)
...+. +|. ..|.+++|+|+++.+++++.|++|++||+ ..+.++..+
T Consensus 346 ~~~~~---~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~----~~~~~~~~l------------------------- 393 (524)
T 2j04_B 346 TKTTV---SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS----RAAFAVHPL------------------------- 393 (524)
T ss_dssp HCEEE---EECSCCSCCCEEEETTTTEEEEECSSSEEEEEET----TCTTCCEEE-------------------------
T ss_pred ccccc---cccccCcccceEeCCCcCeEEEeCCCCcEEEEEC----cccccceee-------------------------
Confidence 66552 343 34789999999999999999999999998 332221111
Q ss_pred EcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccE
Q 007229 303 SLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382 (612)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (612)
.+
T Consensus 394 ---------------------~g--------------------------------------------------------- 395 (524)
T 2j04_B 394 ---------------------VS--------------------------------------------------------- 395 (524)
T ss_dssp ---------------------EE---------------------------------------------------------
T ss_pred ---------------------ec---------------------------------------------------------
Confidence 11
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
|...|++++|+|++
T Consensus 396 ------------------------------------------------------------------H~~~V~sva~Sp~g 409 (524)
T 2j04_B 396 ------------------------------------------------------------------RETTITAIGVSRLH 409 (524)
T ss_dssp ------------------------------------------------------------------CSSCEEEEECCSSC
T ss_pred ------------------------------------------------------------------CCCceEEEEeCCCC
Confidence 12247788999999
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeecc-----ccCceEEEEEcCCCcEEEEEcCCCeEEEEecC-Ccceeeeccccc
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEK-----HRGAITVIQYSPDVSMFASADGNREAIVWDRV-SKEVKLNNMLFH 536 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~ 536 (612)
++|++|+.||+|++||+..+.+ ..... +...+.+++|+|+++.+.. .. ..++|+.. ++..+ ..+.+|
T Consensus 410 ~~l~Sgs~Dgtv~lwd~~~~~~---~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~-~~l~gh 482 (524)
T 2j04_B 410 PMVLAGSADGSLIITNAARRLL---HGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSK-AKIDAH 482 (524)
T ss_dssp CBCEEEETTTEEECCBSCSSTT---TCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC--------------C
T ss_pred CeEEEEECCCEEEEEechHhhc---cccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcce-eeecCC
Confidence 9999999999999999865422 21111 1225789999999985532 22 23444443 34443 567789
Q ss_pred ccceeEEEecCCCc---EEEEeecCcEEEEEEccC
Q 007229 537 TARINCLAWSPSST---MVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 537 ~~~i~~~~~s~~~~---~l~s~~~d~~i~iwd~~~ 568 (612)
..+|.+++|+|++. +||+|+.||.|+||++..
T Consensus 483 ~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 483 GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 99999999999964 999999999999999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=315.64 Aligned_cols=302 Identities=17% Similarity=0.220 Sum_probs=257.9
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
....+.+|...|++++|+|+++ +|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 4456889999999999999999 599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-----CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-----KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
+.+++.+..+ .+...+.+++|+|+++++++++.+ |.|++||+. .......+...
T Consensus 103 ~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~----~~~~~~~~~~~------------- 161 (369)
T 3zwl_B 103 VSNGQCVATW----KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE----RDSATHELTKV------------- 161 (369)
T ss_dssp TTTCCEEEEE----ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE----ECTTTCCEEEE-------------
T ss_pred CCCCcEEEEe----ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec----CCccceeeccc-------------
Confidence 9999999988 588899999999999999999998 999999982 21111000000
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
.......+
T Consensus 162 -----------------------------------------------------~~~~~~~~------------------- 169 (369)
T 3zwl_B 162 -----------------------------------------------------SEEPIHKI------------------- 169 (369)
T ss_dssp -----------------------------------------------------CSSCSEEE-------------------
T ss_pred -----------------------------------------------------ccceeeec-------------------
Confidence 00000000
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceE
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTV 453 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 453 (612)
........+
T Consensus 170 -----------------------------------------------------------------------~~~~~~~~~ 178 (369)
T 3zwl_B 170 -----------------------------------------------------------------------ITHEGLDAA 178 (369)
T ss_dssp -----------------------------------------------------------------------ECCTTCCCE
T ss_pred -----------------------------------------------------------------------cCCcCccce
Confidence 000001258
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccC-cccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeec
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 532 (612)
.+++|+|++++|++++.||.|++||+.+ ... ...+..|...|.+++|+|++++|++++.|+.|++||+.+++.+. .
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~ 255 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK-K 255 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-E
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee-e
Confidence 8999999999999999999999999987 444 67788899999999999999999999999999999999988763 3
Q ss_pred ccccccceeEEEecCCCcEEEEeecCc--------------EEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEE
Q 007229 533 MLFHTARINCLAWSPSSTMVATGSIDT--------------CVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~~~~l~s~~~d~--------------~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s 597 (612)
+. +...+.+++|+|+++++++++.++ .+++||..+ + +.+..+.+|...|++++|+ ++++|++
T Consensus 256 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~-~~~~~~~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 256 YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-E-EEIGRVQGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp EE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-C-CEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-C-cchhheecccCcEEEEEECCCCCEEEE
Confidence 44 788999999999999999999888 899999998 6 7888899999999999999 8999999
Q ss_pred ccCCCeEEEEEecc
Q 007229 598 SGEDACIRVWRLAT 611 (612)
Q Consensus 598 ~~~d~~i~~w~~~~ 611 (612)
++.||.|++|++++
T Consensus 333 ~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 333 GGEDGFIRLHHFEK 346 (369)
T ss_dssp EETTSEEEEEEECH
T ss_pred EcCCCeEEEEECcc
Confidence 99999999999974
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=345.82 Aligned_cols=525 Identities=12% Similarity=0.063 Sum_probs=375.1
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc------CeEEEeecCCC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS------GSVRIWGTHNG 91 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d------~~i~iwd~~~~ 91 (612)
.+.+...+||| +.|++.+.+.|++|++.+++.. .+.+|...|.+++|||||++||+++.+ ..|.+||+.++
T Consensus 14 ~~~~~~~~~S~--~~iaf~~~~~l~~~~~~gg~~~-~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g 90 (1045)
T 1k32_A 14 PNLLLNPDIHG--DRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 90 (1045)
T ss_dssp CCCCEEEEEET--TEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred cceEeCcEEeC--CEEEEEECCcEEEEECCCCcEE-EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCC
Confidence 55788999996 5899999899999999988754 477899999999999999999988643 47999999987
Q ss_pred ceeeeeeeecCCCe-------EEEEECCCCCEEEEEeCCCCe-eeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEE
Q 007229 92 FVLKNEFKVLSGRI-------DDLQWSPDGLRIVACGDGKGK-SFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 92 ~~~~~~~~~~~~~i-------~~~~~s~~~~~l~~~~~~~~~-~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
+ ...+..|...+ ..++|+|||+.+++++.+... ....+|.|+ .+.....+..+. ...++|+| | +
T Consensus 91 ~--~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~~~~~~sp-G--~ 163 (1045)
T 1k32_A 91 E--IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP--ATHILFAD-G--R 163 (1045)
T ss_dssp E--EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS--CSEEEEET-T--E
T ss_pred C--eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCC--cceeeeCC-C--E
Confidence 5 34677888888 999999999955555543100 023577766 233334444333 23567999 7 5
Q ss_pred EEEeec------------CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCeeeeee
Q 007229 163 IATCGE------------DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEKIGEFS 229 (612)
Q Consensus 163 l~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~ 229 (612)
+++++. +...++|....+.....+.+|...+.++.|+++ .++++++.++.+.+|.+.. +.....+.
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~ 242 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT 242 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec
Confidence 777652 334566653332344456889999999999988 6667777889999998753 33444441
Q ss_pred ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
.+. .+...+|+|||++++++ .++.|.+|++ ...+.. .+....
T Consensus 243 ---~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~----~~~~l~-~l~~~~---------------------------- 284 (1045)
T 1k32_A 243 ---SFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP----DTEKIE-KIEIGD---------------------------- 284 (1045)
T ss_dssp ---CCC-SSCEEEEEESSSCEEEE-ETTEEEEECT----TTCCEE-ECCCCC----------------------------
T ss_pred ---CCC-CcceeeEcCCCCEEEEE-eCCEEEEecC----CceEee-eeccCc----------------------------
Confidence 333 45677999999999887 5889999997 333322 222110
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc-ceEEEEe-eccEEEEec
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA-RIKCLAA-VEEVIFTAG 387 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~i~~~~~-~~~~l~~~~ 387 (612)
.........|...+..++|++++++.+++++ ++.+.+|+...+....... +.. .+..+.+ +++.++.++
T Consensus 285 -------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~sdg~~l~~~s 355 (1045)
T 1k32_A 285 -------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPE-PLRIRYVRRGGDTKVAFIHGT 355 (1045)
T ss_dssp -------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSC-CSCEEEEEECSSSEEEEEEEE
T ss_pred -------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccC-CCcceEEeeeEcCCCeEEEEE
Confidence 0001112246667889999823366677666 7899999998877665443 455 7777777 566788888
Q ss_pred CCCeEE-EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee--cccceeee-cccceEEEEEEccCCC
Q 007229 388 FDNKVW-RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVMSKI-DLGFTVTACAIAPDGS 463 (612)
Q Consensus 388 ~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~i~~~~~s~~~~ 463 (612)
.+..++ +|+......... .........++++|++..++....+..+.+|+ +++..... .+...+.+++|||||+
T Consensus 356 ~~~~l~~~~d~~~~~~~~l--~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 356 REGDFLGIYDYRTGKAEKF--EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 433 (1045)
T ss_dssp TTEEEEEEEETTTCCEEEC--CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred CCCceEEEEECCCCCceEe--cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC
Confidence 788888 999877653211 13345677899999998888877777899988 44444444 4667789999999999
Q ss_pred eEEEEecCC----------eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce-----
Q 007229 464 EAIVGGQNG----------KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV----- 528 (612)
Q Consensus 464 ~l~~~~~dg----------~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~----- 528 (612)
+|++++.++ .|++||+.+++. ..+..|...+..++|+|||++|++++.++...+|+......
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~---~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~ 510 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKI---FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 510 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTEE---EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCcE---EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccC
Confidence 999887754 899999998763 56677888899999999999999999877777775432211
Q ss_pred -------------------------------------eeecccccccceeEEEecCCCcEEEE-------------eecC
Q 007229 529 -------------------------------------KLNNMLFHTARINCLAWSPSSTMVAT-------------GSID 558 (612)
Q Consensus 529 -------------------------------------~~~~~~~~~~~i~~~~~s~~~~~l~s-------------~~~d 558 (612)
....+..|...+..++++|||+++++ ...+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~ 590 (1045)
T 1k32_A 511 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK 590 (1045)
T ss_dssp BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC
T ss_pred ceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCC
Confidence 01123336677889999999998875 1235
Q ss_pred cEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 559 TCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 559 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
..+++||+.+ + + ...+. ..+.+++|+ |+++|++++.| .|++||++++
T Consensus 591 ~~l~~~d~~~-~-~-~~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~ 638 (1045)
T 1k32_A 591 GVLLKYDVKT-R-K-VTEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEK 638 (1045)
T ss_dssp EEEEEEETTT-C-C-EEEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSC
T ss_pred ceEEEEECCC-C-c-EEEee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccC
Confidence 5788888887 3 2 23333 568899999 99999998877 7999999753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=307.39 Aligned_cols=297 Identities=21% Similarity=0.330 Sum_probs=250.0
Q ss_pred CCCCCCceeEEEEccC-CCEEEEec-CCEEEEEeCCCCc-----eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEe
Q 007229 14 PSTERGRGILISGNPK-TDTILYCN-GRSVLIRYLDKPL-----HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIW 86 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d-~~~l~~~~-~~~i~i~~~~~~~-----~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iw 86 (612)
..+|++.|++++|+|+ +++|++++ |+.|+|||+.+++ +.+.+.+|...|.+++|+|||++|++++.|+.|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 3579999999999998 68999888 8999999997654 456788999999999999999999999999999999
Q ss_pred ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcCCCC-EEEE
Q 007229 87 GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKPTRP-FRIA 164 (612)
Q Consensus 87 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~l~ 164 (612)
+..... .......+...+....+++++++|++++.++ .+.+|+.... .....+.+|...+..++|++++. .+++
T Consensus 114 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 114 DLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK---TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp ETTTTE-EEEEEECCSSCEEEEEECTTSSCEEEEETTS---CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred eecccc-eeeeecCCCCceeEEEEeecCccceeecCCC---eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999887 4556777888999999999999999999988 3455555433 34455678999999999998753 2588
Q ss_pred EeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 165 TCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
+++.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+...+.+++|+
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~ 265 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL----DGGDIINALCFS 265 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE----ECSSCEEEEEEC
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee----cCCceEEeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999998888 566789999999
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec
Q 007229 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS 324 (612)
Q Consensus 245 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (612)
|++. +++++.|+.|++||+ +.+..+..+.... ......
T Consensus 266 ~~~~-~~~~~~d~~i~iwd~----~~~~~~~~~~~~~-------------------------------------~~~~~~ 303 (340)
T 4aow_A 266 PNRY-WLCAATGPSIKIWDL----EGKIIVDELKQEV-------------------------------------ISTSSK 303 (340)
T ss_dssp SSSS-EEEEEETTEEEEEET----TTTEEEEEECCC--------------------------------------------
T ss_pred CCCc-eeeccCCCEEEEEEC----CCCeEEEeccccc-------------------------------------eeeecc
Confidence 9876 556668999999999 7777766554321 123345
Q ss_pred CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 325 GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
+|...|++++|++ ++++|++|+.||.|++||+.++.
T Consensus 304 ~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 304 AEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 7899999999983 27899999999999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=318.56 Aligned_cols=311 Identities=15% Similarity=0.171 Sum_probs=250.8
Q ss_pred EEeCCCCceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCceeeeeee--ecCCCeEEEEECC-CCCEEE
Q 007229 43 IRYLDKPLHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFVLKNEFK--VLSGRIDDLQWSP-DGLRIV 118 (612)
Q Consensus 43 i~~~~~~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~s~-~~~~l~ 118 (612)
+|++.+.+....+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++.. ..+. +|...|.+++|+| ++++|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-SFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-EEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-eeeecCCcCCceeEEEeCCCCCCEEE
Confidence 44556667778899999999999999999 99999999999999999988743 3333 6999999999999 789999
Q ss_pred EEeCCCCeeeEEEEEecCCceeeeecc---CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEE
Q 007229 119 ACGDGKGKSFVRAFMWDSGTTVGDFDG---HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNC 195 (612)
Q Consensus 119 ~~~~~~~~~~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 195 (612)
+++.++ .+++|+.+. ..+..+.. |...|.+++|+|+++ .+++++.|+.|++||+ +++.+..+.+|...|.+
T Consensus 136 s~~~d~---~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 136 VSSIRG---ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEETTT---EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred EEeCCC---EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 999888 567776664 55555544 448899999999999 5999999999999999 57788889999999999
Q ss_pred EEECCCCC-eEEEEEcCCcEEEEecCC----CCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecCCC
Q 007229 196 IRFSPDGS-KLISVSSDRKGLIYDGKS----GEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 196 ~~~s~~~~-~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
++|+|+++ +|++++.|+.|++||+++ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+ .
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~----~ 281 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS----Y 281 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEET----T
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC----C
Confidence 99999999 899999999999999998 5566666 7899999999999 9999999999999999999 5
Q ss_pred CCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC
Q 007229 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD 349 (612)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 349 (612)
+++....+..+. .....|...+. +.|+
T Consensus 282 ~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~-~~~~------------- 308 (383)
T 3ei3_B 282 DWSKPDQIIIHP---------------------------------------HRQFQHLTPIK-ATWH------------- 308 (383)
T ss_dssp BTTSCSEEEECC---------------------------------------BCCCTTSCCCC-CEEC-------------
T ss_pred CCcccccccccc---------------------------------------ccccccccceE-Eecc-------------
Confidence 555443333221 00001111111 0111
Q ss_pred CcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEE
Q 007229 350 GAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429 (612)
Q Consensus 350 g~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (612)
|
T Consensus 309 -----------------------------------------------------------------------p-------- 309 (383)
T 3ei3_B 309 -----------------------------------------------------------------------P-------- 309 (383)
T ss_dssp -----------------------------------------------------------------------S--------
T ss_pred -----------------------------------------------------------------------C--------
Confidence 1
Q ss_pred EeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc--ccCceEEEEEcCCCc
Q 007229 430 STESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK--HRGAITVIQYSPDVS 507 (612)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~ 507 (612)
...+..++++|++++ +++.||.|++||+.+++. ...+.+ |...+..++|+|+++
T Consensus 310 --------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~~~~s~~g~ 365 (383)
T 3ei3_B 310 --------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISLNKFSPTGD 365 (383)
T ss_dssp --------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCEEEECTTSS
T ss_pred --------------------CCCceEEEecCCccc--ccCCCCeEEEEecCCCce--eeeecCCCCCceEEEEEEecCcc
Confidence 123566889999998 899999999999998887 455554 667888889999999
Q ss_pred EEEEEcCCCeEEEEecCC
Q 007229 508 MFASADGNREAIVWDRVS 525 (612)
Q Consensus 508 ~l~~~~~d~~i~iwd~~~ 525 (612)
+|++++ |+.|++||+++
T Consensus 366 ~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 366 VLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEEE-TTEEEEEECC-
T ss_pred EEEEec-CCcEEEEecCC
Confidence 999997 99999999875
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=317.13 Aligned_cols=324 Identities=16% Similarity=0.255 Sum_probs=263.3
Q ss_pred ceeeEeccCCCce-EEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 50 LHVEFYGEHGYPV-TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 50 ~~~~~~~~h~~~v-~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.....+.+|...| .++.+ ++++|++|+.||+|++||+.+++ ....+.+|.+.|.+++|+|++ .|++++.++ .
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg---~ 184 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGG-ILVSGSTDR---T 184 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSTT-EEEEEETTS---C
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCC---C
Confidence 3456788998885 66555 66799999999999999999998 556788999999999999998 899999888 5
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcC--CCCEEEEEeecCCeEEEEeCCCCee-----------------------e
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKP--TRPFRIATCGEDFLVNFYEGPPFKF-----------------------K 183 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~-----------------------~ 183 (612)
+++|+.++++.+..+.+|...|.+++|++ +++ .+++++.|+.|++||+.++.. .
T Consensus 185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEEEECCCCcEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 78898889999999999999999999994 556 699999999999999987653 3
Q ss_pred ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 184 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
..+.+|...+.++ +++++++++++.|+.|++||+.+++.+..+ .+|...|.+++|+|+++++++++.||.|++||
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 4567888888887 577999999999999999999999998888 47999999999999999999999999999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
+ .+++.+..+ .+|...
T Consensus 339 ~----~~~~~~~~~----------------------------------------------~~h~~~-------------- 354 (464)
T 3v7d_B 339 L----ENGELMYTL----------------------------------------------QGHTAL-------------- 354 (464)
T ss_dssp T----TTTEEEEEE----------------------------------------------CCCSSC--------------
T ss_pred C----CCCcEEEEE----------------------------------------------eCCCCc--------------
Confidence 9 555444322 123323
Q ss_pred EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 344 LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
T Consensus 355 -------------------------------------------------------------------------------- 354 (464)
T 3v7d_B 355 -------------------------------------------------------------------------------- 354 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEc
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s 503 (612)
+.+++++ +++|++++.||.|++||+.++.. .. ...|...+..++|+
T Consensus 355 -----------------------------v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--~~-~~~~~~~~~~~~~~ 400 (464)
T 3v7d_B 355 -----------------------------VGLLRLS--DKFLVSAAADGSIRGWDANDYSR--KF-SYHHTNLSAITTFY 400 (464)
T ss_dssp -----------------------------EEEEEEC--SSEEEEEETTSEEEEEETTTCCE--EE-EEECTTCCCEEEEE
T ss_pred -----------------------------EEEEEEc--CCEEEEEeCCCcEEEEECCCCce--ee-eecCCCCccEEEEE
Confidence 4444554 35677777777777777766543 12 12356678889999
Q ss_pred CCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 504 PDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 504 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
|+++++++++ ||.|++||+.+++.+......|...|.+++|+ +..++++++.|+.+.+|-+
T Consensus 401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 401 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred eCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 9999999998 89999999999999866677799999999997 4456667777887666544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=315.10 Aligned_cols=316 Identities=15% Similarity=0.165 Sum_probs=255.1
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
+.+.|.+++|+||+++|++++ ++.|++||+++++ .+..+.+|...|++++|+|++++|++++.||.|++||+.+++.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 677899999999999999996 8999999999987 7888999999999999999999999999999999999988863
Q ss_pred e-eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce----eeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 94 L-KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 94 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
. ...+..|...|.+++|+|++++|++++.++ .+.+|+++.++. ......|...|.+++|+|+++ ++++++.
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 162 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSC 162 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCC---EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcC
Confidence 2 223467899999999999999999999887 578888887662 333467899999999999999 5999999
Q ss_pred CCeEEEEeC------------------CCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 169 DFLVNFYEG------------------PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 169 d~~i~~wd~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
|+.|++||+ ..++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 241 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA- 241 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-
Confidence 999999995 4678888888999999999999999999999999999999999999988883
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC--Ce--eEeeeeccCccccceeeeeeeccCCEEEEEEcCC
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG--GR--VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (612)
.|..++.+++|+|++++++++ .|+.+++|++ .. +. .+..+...... ......
T Consensus 242 --~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~----~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 297 (372)
T 1k8k_C 242 --SETLPLLAVTFITESSLVAAG-HDCFPVLFTY----DSAAGKLSFGGRLDVPKQS-----------------SQRGLT 297 (372)
T ss_dssp --CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE----ETTTTEEEECCCCCCC-------------------------C
T ss_pred --cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc----cCcCceEEEeeccCccccc-----------------hhhhcc
Confidence 788899999999999988877 8999999999 44 32 22222111000 000011
Q ss_pred EEEEE---EcCCCCCC------ceeecCcccceeEEEEEecCC---cEEEEEecCCcEEEEEcCCcee
Q 007229 307 IISIF---SASNLDKA------PLSFSGHVKNVSTLTALKISQ---QTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 307 ~i~~~---~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
.+.+| +... ... .....+|...|.++++.+.++ .+|++++.||.|++|++.+.+.
T Consensus 298 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 298 ARERFQNLDKKA-SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp HHHHHHHCCCCC----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhhhhhhccccc-ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 12222 1000 000 122348999999999886556 8999999999999999876543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=314.92 Aligned_cols=297 Identities=14% Similarity=0.105 Sum_probs=223.8
Q ss_pred CCceEEEEECCCCCEEEEeeCcC-------eEEEeecCCCcee---------eeeeeecCCCeEEEEECCCCCEEEEEeC
Q 007229 59 GYPVTVARYSPNGEWIASADVSG-------SVRIWGTHNGFVL---------KNEFKVLSGRIDDLQWSPDGLRIVACGD 122 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~-------~i~iwd~~~~~~~---------~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 122 (612)
..+|.+++|+|||++||+|+.+. .|++|++...... ...+..|...+.++++ +++.++++..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 46899999999999999987543 5999999865431 1123345555555544 3445555443
Q ss_pred CCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee---------cccccccce
Q 007229 123 GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL---------SHREHSNFV 193 (612)
Q Consensus 123 ~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---------~~~~~~~~v 193 (612)
++. . .+++++.|+.+++|++....... ....+...+
T Consensus 92 ~~~----------------------------------~-~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (365)
T 4h5i_A 92 ENS----------------------------------T-KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYT 136 (365)
T ss_dssp CCH----------------------------------H-HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCE
T ss_pred CCc----------------------------------c-EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCE
Confidence 321 1 35666778888888865543211 122345668
Q ss_pred EEEEECCCCCeEEEEE--cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC
Q 007229 194 NCIRFSPDGSKLISVS--SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG 271 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 271 (612)
.+++|||||++|++++ .|++|++||+++++.+..+ .|...|.+++|+|||+++++++.+ .+.+|+. .++
T Consensus 137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~----~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~----~~~ 207 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI----ETRGEVKDLHFSTDGKVVAYITGS-SLEVIST----VTG 207 (365)
T ss_dssp EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE----ECSSCCCEEEECTTSSEEEEECSS-CEEEEET----TTC
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe----CCCCceEEEEEccCCceEEeccce-eEEEEEe----ccC
Confidence 9999999999987655 6899999999999999888 678889999999999999998754 5677766 333
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 351 (612)
+.+.... ..+
T Consensus 208 ~~~~~~~--------------------------------------------~~~-------------------------- 217 (365)
T 4h5i_A 208 SCIARKT--------------------------------------------DFD-------------------------- 217 (365)
T ss_dssp CEEEEEC--------------------------------------------CCC--------------------------
T ss_pred cceeeee--------------------------------------------cCC--------------------------
Confidence 2211100 000
Q ss_pred EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST 431 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
T Consensus 218 -------------------------------------------------------------------------------- 217 (365)
T 4h5i_A 218 -------------------------------------------------------------------------------- 217 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC----eEEEEEccCccc--ccceeeccccCceEEEEEcCC
Q 007229 432 ESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG----KLHIYSISGNTL--TEEMVLEKHRGAITVIQYSPD 505 (612)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~v~i~d~~~~~~--~~~~~~~~~~~~i~~~~~s~~ 505 (612)
+...+.+++|+|+++++++++.|+ .+++|++..... .....+.+|..+|++++|+||
T Consensus 218 -----------------~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd 280 (365)
T 4h5i_A 218 -----------------KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK 280 (365)
T ss_dssp -----------------TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred -----------------CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence 122467788899999998888877 678888876543 223567789999999999999
Q ss_pred CcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 506 VSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 506 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|++||+|+.|++|+|||+++++++...+.+|..+|++++|||||++||+|+.|++|+|||++.
T Consensus 281 g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 281 GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999988666788999999999999999999999999999999976
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=323.67 Aligned_cols=321 Identities=11% Similarity=0.099 Sum_probs=251.0
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS 136 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~ 136 (612)
.-...|.+++|||||+++||++.|++|+ |...++ .+.+|...|.+++|+|+| .++ .|.+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~----~l~gh~~~v~~V~FsPdg-------~~~------~~~~~~ 73 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK----DINCNSKNLFHVKEFPLE-------FEN------KLDFEL 73 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS----CCSSBGGGTEEEEEECCC-------CCC------TTTTSC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc----eecCCCccEEEEEECCCC-------Ccc------eEEEEe
Confidence 4567899999999999999999999999 755554 446899999999999999 222 455554
Q ss_pred Cceeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc-----ceEEEEECCCCCeEEEEEc
Q 007229 137 GTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN-----FVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 137 ~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~ 210 (612)
++....+. .|...|.+++|+|+|. +||+++.||.|++||.+. ++..+. |.. .+.+++|||||++|++|+.
T Consensus 74 ~~~~~~~~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 74 AQQNGLLNSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp CCSSCSSTTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CCCceEeecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 44433443 5689999999999999 599999999999999655 555566 665 4999999999999999999
Q ss_pred CCcEEEEecCCCCe-------eeeeec-cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 211 DRKGLIYDGKSGEK-------IGEFSS-EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 211 dg~i~vwd~~~~~~-------~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
||+|++||+.++.. +..+.. ..+|...|.+++|+||| +++++.|+++++|++ ..+...
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~----~~~~~~-------- 215 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV----SASSHQ-------- 215 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC----CSSSSC--------
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC----CCCccc--------
Confidence 99999999998753 344311 13688899999999999 888899999999998 333311
Q ss_pred cccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee-cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce
Q 007229 283 NAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF-SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361 (612)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 361 (612)
.....+ .+|...|.+++|+ ++.+++++ ++.|++||+.+++
T Consensus 216 -----------------------------------~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~ 256 (588)
T 2j04_A 216 -----------------------------------PVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYS 256 (588)
T ss_dssp -----------------------------------CCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTE
T ss_pred -----------------------------------cceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCe
Confidence 001223 3577899999998 57888887 6999999988766
Q ss_pred eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecc
Q 007229 362 SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (612)
......
T Consensus 257 ~~~~~~-------------------------------------------------------------------------- 262 (588)
T 2j04_A 257 ISSLKT-------------------------------------------------------------------------- 262 (588)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEEc--------------------------------------------------------------------------
Confidence 532221
Q ss_pred cceeeecccceEEEEEE--ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 442 KVMSKIDLGFTVTACAI--APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 442 ~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
.|...+..++| +||+..+++++++|+ ++|..+ .++|+||+..+++. |++++
T Consensus 263 ------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------------~~~~spd~~l~a~~--d~~v~ 315 (588)
T 2j04_A 263 ------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------------ELHVTADNIIAPYL--EKKFK 315 (588)
T ss_dssp ------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------------------SEEEECCCSSHHHH--HHHHH
T ss_pred ------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------------cEEECCCceEEEEc--CCEEE
Confidence 13345778899 999999999999999 999876 15689999888875 88999
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeec
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 557 (612)
+|+...+.. ..+. +...|.+++|||||+.+|+++.
T Consensus 316 lW~~~g~~l--~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 316 KWSTIWNEF--NNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HTTTTTTSS--SSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCCce--eeec-cceEEEEEEECCCCCEEEEEEe
Confidence 998866653 3444 3677999999999999998863
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=315.52 Aligned_cols=322 Identities=18% Similarity=0.268 Sum_probs=270.5
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
....+.+|.+.+.. ++++++++|++++.++ .+++|++.+++.+..+.+|...|.+++|+++ ++++|+.||.|+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~~~dg~i~ 182 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDN---TLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLK 182 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTS---CEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCC---cEEEEECCCCcEEEEEcCCCCCEEEEEecCC---EEEEEeCCCeEE
Confidence 34567889887533 3556799999999988 5789998899999999999999999999843 699999999999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
+||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++||+.+++.+..+ .+|...+.+++| ++++++++
T Consensus 183 vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 183 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL---MGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE---ECCSSCEEEEEE--CSSCEEEE
T ss_pred EEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE---cCCcccEEEEEE--CCCEEEEE
Confidence 99999999999999999999999996 668999999999999999999998887 389999999999 78899999
Q ss_pred eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 254 SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 254 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
+.||.|++||+ .+++.+.. +.+|...+.++
T Consensus 256 ~~dg~i~iwd~----~~~~~~~~----------------------------------------------~~~~~~~v~~~ 285 (445)
T 2ovr_B 256 AYDFMVKVWDP----ETETCLHT----------------------------------------------LQGHTNRVYSL 285 (445)
T ss_dssp ETTSCEEEEEG----GGTEEEEE----------------------------------------------ECCCSSCEEEE
T ss_pred cCCCEEEEEEC----CCCcEeEE----------------------------------------------ecCCCCceEEE
Confidence 99999999999 65555433 34577788888
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
.+ + +..+++++.||.|++||+.+++.......|
T Consensus 286 ~~-~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------------------------- 318 (445)
T 2ovr_B 286 QF-D--GIHVVSGSLDTSIRVWDVETGNCIHTLTGH-------------------------------------------- 318 (445)
T ss_dssp EE-C--SSEEEEEETTSCEEEEETTTCCEEEEECCC--------------------------------------------
T ss_pred EE-C--CCEEEEEeCCCeEEEEECCCCCEEEEEcCC--------------------------------------------
Confidence 88 3 889999999999999999876654332211
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc-
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK- 492 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~- 492 (612)
...+.++.+ +++++++|+.||.|++||+.+++. ...+..
T Consensus 319 ------------------------------------~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~ 358 (445)
T 2ovr_B 319 ------------------------------------QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQC--LQTLQGP 358 (445)
T ss_dssp ------------------------------------CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE--EEEECST
T ss_pred ------------------------------------cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcE--EEEEccC
Confidence 123444544 567899999999999999988776 455554
Q ss_pred --ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc----cccccceeEEEecCCCcEEEEeecCcE----EE
Q 007229 493 --HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM----LFHTARINCLAWSPSSTMVATGSIDTC----VI 562 (612)
Q Consensus 493 --~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~s~~~d~~----i~ 562 (612)
|..+|++++|+ +++|++++.||.|++||+.+++.+.... .+|.+.|.+++|+|++.+||+|+.||+ +.
T Consensus 359 ~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~ 436 (445)
T 2ovr_B 359 NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 436 (445)
T ss_dssp TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence 88899999995 5799999999999999999998764331 468899999999999999999999997 99
Q ss_pred EEEccC
Q 007229 563 IYEIGK 568 (612)
Q Consensus 563 iwd~~~ 568 (612)
+||++.
T Consensus 437 v~df~~ 442 (445)
T 2ovr_B 437 VLDFDV 442 (445)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999986
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=317.67 Aligned_cols=300 Identities=17% Similarity=0.225 Sum_probs=248.4
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe------eeecccccccceEEEEECCC----C---CeEE
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK------FKLSHREHSNFVNCIRFSPD----G---SKLI 206 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l~ 206 (612)
...+.+|...|++++|+| + +|++++.||.|++||+.+++ ....+.+|..+|.+++|+|+ + ++|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 456789999999999999 4 69999999999999999887 67788899999999999999 9 9999
Q ss_pred EEEcCCcEEEEecCCCCe-----eeeeeccCCc-----cccEEEEEEe----cCCCE-EEEEeCCCcEEEEEeecCCCC-
Q 007229 207 SVSSDRKGLIYDGKSGEK-----IGEFSSEDGH-----HGSIYAVSWS----PDGKK-VLTVSADKSAKVWEILEDGSG- 270 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~~~dg~i~iw~~~~~~~~- 270 (612)
+++.|+.|++||+.+++. ...+ ..| ...|.+++|+ |++++ |++++.||.|++||+ ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~ 158 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKL---DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF----HPF 158 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEE---CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE----ESS
T ss_pred EEcCCCCEEEEEccCCcccccccceee---cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC----Ccc
Confidence 999999999999998886 6666 356 5899999999 99999 999999999999999 32
Q ss_pred -----CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 271 -----GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 271 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
++.+. +. ...-+.
T Consensus 159 ~~~~~~~~~~-----------------------------------------------------------~~---~~~~~~ 176 (397)
T 1sq9_A 159 ADESNSLTLN-----------------------------------------------------------WS---PTLELQ 176 (397)
T ss_dssp SSHHHHTTTC-----------------------------------------------------------CC---CEEEEE
T ss_pred ccccccceee-----------------------------------------------------------cc---Ccceee
Confidence 11000 00 000000
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCc
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE 425 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (612)
+. +.
T Consensus 177 ~~----~~------------------------------------------------------------------------ 180 (397)
T 1sq9_A 177 GT----VE------------------------------------------------------------------------ 180 (397)
T ss_dssp EE----EC------------------------------------------------------------------------
T ss_pred ee----ec------------------------------------------------------------------------
Confidence 00 00
Q ss_pred EEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc---c---cCceEE
Q 007229 426 LALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK---H---RGAITV 499 (612)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~---~~~i~~ 499 (612)
....+...+.+++|+|++ ++++++.||.|++||+.+++. ...+.. | ...|.+
T Consensus 181 -------------------~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 181 -------------------SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP--LYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp -------------------CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE--EEEEECCC---CCCCCEEE
T ss_pred -------------------cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce--eEEEeccccccccCCccce
Confidence 000123458899999999 999999999999999998776 566777 8 999999
Q ss_pred EEEcCCCcEEEEEcCC---CeEEEEecCCcceeeecccc-------------cccceeEEEecCCCcEEEEeecCcEEEE
Q 007229 500 IQYSPDVSMFASADGN---REAIVWDRVSKEVKLNNMLF-------------HTARINCLAWSPSSTMVATGSIDTCVII 563 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~s~~~d~~i~i 563 (612)
++|+|++++|++++.| +.|++||+.+++.+ ..+.+ |...|.+++|+|++++|++++.|+.|++
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999999 99999999998876 45666 8999999999999999999999999999
Q ss_pred EEccCCCcceeeeec------cc---------------ccCeeeEEEe-cC----------ceEEEccCCCeEEEEEecc
Q 007229 564 YEIGKPASSRITIKN------AH---------------LGGVYGVAFM-DD----------FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 564 wd~~~~~~~~~~~~~------~h---------------~~~v~~~~~~-~~----------~~l~s~~~d~~i~~w~~~~ 611 (612)
||+.+ + +++..+. +| ...|.+++|+ ++ .+|++++.||.|++|++++
T Consensus 318 wd~~~-~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 318 WDVKT-K-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EETTT-T-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EEcCC-C-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 99998 6 7777787 77 9999999999 66 6999999999999999987
Q ss_pred C
Q 007229 612 E 612 (612)
Q Consensus 612 ~ 612 (612)
+
T Consensus 396 g 396 (397)
T 1sq9_A 396 G 396 (397)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=336.85 Aligned_cols=292 Identities=20% Similarity=0.310 Sum_probs=240.7
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC-----eeeecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF-----KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
...+.+|.+.|++++|+|++..+|++|+.|++|++||+.+. .....+.+|...|.+++|+|++++|++++.|++|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 34688999999999999987557999999999999998763 3455688999999999999999999999999999
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
++||+.+++....+ .+|...|.+++|+|++++|++++.|++|++||. ...... .+..
T Consensus 455 ~vwd~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~----~~~~~~-~~~~--------------- 511 (694)
T 3dm0_A 455 RLWDLAAGVSTRRF---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT----LGECKY-TISE--------------- 511 (694)
T ss_dssp EEEETTTTEEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECT----TSCEEE-EECS---------------
T ss_pred EEEECCCCcceeEE---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC----CCCcce-eecc---------------
Confidence 99999999988887 389999999999999999999999999999997 211100 0000
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
...+
T Consensus 512 ---------------------------~~~~------------------------------------------------- 515 (694)
T 3dm0_A 512 ---------------------------GGEG------------------------------------------------- 515 (694)
T ss_dssp ---------------------------STTS-------------------------------------------------
T ss_pred ---------------------------CCCC-------------------------------------------------
Confidence 0000
Q ss_pred EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEE
Q 007229 375 CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVT 454 (612)
Q Consensus 375 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 454 (612)
|...|.
T Consensus 516 --------------------------------------------------------------------------h~~~v~ 521 (694)
T 3dm0_A 516 --------------------------------------------------------------------------HRDWVS 521 (694)
T ss_dssp --------------------------------------------------------------------------CSSCEE
T ss_pred --------------------------------------------------------------------------CCCcEE
Confidence 122477
Q ss_pred EEEEccCC--CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeec
Q 007229 455 ACAIAPDG--SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNN 532 (612)
Q Consensus 455 ~~~~s~~~--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 532 (612)
+++|+|++ ..+++++.|+.|++||+.+++. ...+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+. .
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~-~ 598 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-S 598 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE-C
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-E
Confidence 88888876 5799999999999999988776 67788999999999999999999999999999999999998864 3
Q ss_pred ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccc-------------------cCeeeEEEe-cC
Q 007229 533 MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHL-------------------GGVYGVAFM-DD 592 (612)
Q Consensus 533 ~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~-------------------~~v~~~~~~-~~ 592 (612)
+. +...|.+++|+|++.+|++++ |+.|++||+++ + ..+..+..+. ..+++++|+ ++
T Consensus 599 ~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 599 LE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES-K-SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp CB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT-T-EEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred ec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC-C-CChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 44 456899999999998887765 55699999998 4 4554443221 237889999 99
Q ss_pred ceEEEccCCCeEEEEEecc
Q 007229 593 FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 593 ~~l~s~~~d~~i~~w~~~~ 611 (612)
++|++++.||.|++|++..
T Consensus 675 ~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp SEEEEEETTSEEEEEEC--
T ss_pred CEEEEEcCCCeEEEEeccC
Confidence 9999999999999999864
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=311.78 Aligned_cols=294 Identities=16% Similarity=0.201 Sum_probs=239.8
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK 220 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 220 (612)
+..|..+|.+++|+|+++ ++++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 455899999999999999 59999999999999999987 788899999999999999999999999999999999999
Q ss_pred CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEE
Q 007229 221 SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLI 300 (612)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (612)
+++....+.. ..|...|.+++|+|++++|++++.||.+++||+ ..........
T Consensus 83 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~----~~~~~~~~~~---------------------- 135 (372)
T 1k8k_C 83 GRTWKPTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYF----EQENDWWVCK---------------------- 135 (372)
T ss_dssp TTEEEEEEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE----ETTTTEEEEE----------------------
T ss_pred CCeeeeeEEe-ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe----cCCCcceeee----------------------
Confidence 8875554432 378899999999999999999999999999998 2221100000
Q ss_pred EEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeec
Q 007229 301 TVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVE 380 (612)
Q Consensus 301 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~ 380 (612)
....+|
T Consensus 136 --------------------~~~~~~------------------------------------------------------ 141 (372)
T 1k8k_C 136 --------------------HIKKPI------------------------------------------------------ 141 (372)
T ss_dssp --------------------EECTTC------------------------------------------------------
T ss_pred --------------------eeeccc------------------------------------------------------
Confidence 000011
Q ss_pred cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 460 (612)
...+.+++|+|
T Consensus 142 ---------------------------------------------------------------------~~~i~~~~~~~ 152 (372)
T 1k8k_C 142 ---------------------------------------------------------------------RSTVLSLDWHP 152 (372)
T ss_dssp ---------------------------------------------------------------------CSCEEEEEECT
T ss_pred ---------------------------------------------------------------------CCCeeEEEEcC
Confidence 22467777888
Q ss_pred CCCeEEEEecCCeEEEEEcc------------------CcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 461 DGSEAIVGGQNGKLHIYSIS------------------GNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~------------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
++++|++++.||.|++||+. .++. ...+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL--MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE--EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh--eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 88888888888888888853 3333 566778999999999999999999999999999999
Q ss_pred cCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC--CCc-----------------------------
Q 007229 523 RVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK--PAS----------------------------- 571 (612)
Q Consensus 523 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~~~----------------------------- 571 (612)
+.+++.+ ..+..|..+|.+++|+|++++|+++ .|+.|++|++.. +..
T Consensus 231 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 231 ADKKMAV-ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGGTTEE-EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCCcee-EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 9999876 5567799999999999999988888 899999999987 210
Q ss_pred -ce-------eeeecccccCeeeEEEe--cC---ceEEEccCCCeEEEEEecc
Q 007229 572 -SR-------ITIKNAHLGGVYGVAFM--DD---FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 572 -~~-------~~~~~~h~~~v~~~~~~--~~---~~l~s~~~d~~i~~w~~~~ 611 (612)
.. .....+|...|++++|. ++ .+|++++.||.|++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 00 12225899999999977 44 8999999999999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=307.77 Aligned_cols=298 Identities=17% Similarity=0.224 Sum_probs=240.1
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeec---CCeEEEEeCCCCeeeec-ccccccceEEEEECCC---CCeEEEEEcCCc
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGE---DFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPD---GSKLISVSSDRK 213 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~---~~~l~~~~~dg~ 213 (612)
..+.+|...|.+++|+|+++.++++++. |+.|++||+.+++.... ..+|..+|.+++|+|+ +++|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 3457799999999999999877778877 99999999998876654 3379999999999998 699999999999
Q ss_pred EEEEecCCCC-eeeeeeccCCccccEEEEEE------ecCCCEEEEEeCCCcEEEEEeecCCCCCe-eEeeeeccCcccc
Q 007229 214 GLIYDGKSGE-KIGEFSSEDGHHGSIYAVSW------SPDGKKVLTVSADKSAKVWEILEDGSGGR-VIKTFASSTSNAV 285 (612)
Q Consensus 214 i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~ 285 (612)
|++||+.+++ .+..+ .+|...|.+++| +|++++|++++.||.|++||+ ..++ .+..+....
T Consensus 92 i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~----~~~~~~~~~~~~~~---- 160 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSV---KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP----RQKDDPVANMEPVQ---- 160 (357)
T ss_dssp EEEECTTSCSSCSEEE---CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT----TSCSSCSEEECCCT----
T ss_pred EEEEeCCCCCccEEEE---EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeC----CCCCCcceeccccC----
Confidence 9999999988 66666 489999999955 678999999999999999999 5443 333322211
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEE---ecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL---KISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
..+...+.++.+. .+++.++++++.||.|++||+++++.
T Consensus 161 --------------------------------------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 161 --------------------------------------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL 202 (357)
T ss_dssp --------------------------------------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred --------------------------------------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence 0123367777753 24588999999999999999887654
Q ss_pred eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 363 SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
...
T Consensus 203 ~~~----------------------------------------------------------------------------- 205 (357)
T 3i2n_A 203 RWE----------------------------------------------------------------------------- 205 (357)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred eee-----------------------------------------------------------------------------
Confidence 221
Q ss_pred ceeeecccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCcccccce---eeccccCceEEEEEcCCCc-EEEEEcCC
Q 007229 443 VMSKIDLGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTLTEEM---VLEKHRGAITVIQYSPDVS-MFASADGN 515 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~-~l~~~~~d 515 (612)
..+...+.+++|+| +++++++++.||.|++||+.+++..... .+.+|...|++++|+|+++ +|++++.|
T Consensus 206 ----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 206 ----TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp ----EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred ----cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence 11334689999999 9999999999999999999887652221 2338999999999999998 89999999
Q ss_pred CeEEEEecCCcce------------------eeecccccccceeEEEecCCCcEEE-EeecCcEEEEEEccC
Q 007229 516 REAIVWDRVSKEV------------------KLNNMLFHTARINCLAWSPSSTMVA-TGSIDTCVIIYEIGK 568 (612)
Q Consensus 516 ~~i~iwd~~~~~~------------------~~~~~~~~~~~i~~~~~s~~~~~l~-s~~~d~~i~iwd~~~ 568 (612)
|.|++||+..+.. ....+.+|..+|++++|+|++++|+ +++.|+.|++||+.+
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 9999999986432 2345677999999999999999998 899999999999987
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=304.84 Aligned_cols=301 Identities=14% Similarity=0.155 Sum_probs=253.4
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
..|++.|++++|+|+|++|++++ ++.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 35788999999999999999998 89999999999999999999999999999999999999999999999999999884
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCC-----CCeeeEEEEEecCCc-----------eeeeeccCCc--eEEEEEE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDG-----KGKSFVRAFMWDSGT-----------TVGDFDGHSR--RVLSCEF 155 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-----~~~~~i~i~~~~~~~-----------~~~~~~~~~~--~v~~~~~ 155 (612)
+ ..+. +...+.+++|+|+++++++++.+ + .+.+|+.+.+. .+..+..|.. .+.+++|
T Consensus 109 ~-~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 109 V-ATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPG---SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp E-EEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCC---EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred E-EEee-cCCCeEEEEEccCCCEEEEecCCccCCCC---EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 3 3444 88999999999999999999887 5 56777776443 4455666766 9999999
Q ss_pred cCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCc
Q 007229 156 KPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234 (612)
Q Consensus 156 ~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 234 (612)
+|+++ .+++++.||.|++||+.+ ++....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ .+
T Consensus 184 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~ 258 (369)
T 3zwl_B 184 STKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY----ET 258 (369)
T ss_dssp CGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----EC
T ss_pred cCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee----cC
Confidence 99999 599999999999999998 7888889999999999999999999999999999999999999999888 57
Q ss_pred cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
...+..++|+|+++++++++.++...+|.. ... .....+.+|+..
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~-------------------------------~~~~~i~~~d~~ 303 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTT----SAN-------------------------------EGKFEARFYHKI 303 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC------------------------------------------------CEEEEEETT
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEE----ecC-------------------------------CCcceeEEEecC
Confidence 889999999999999999999987666655 110 011245666644
Q ss_pred CCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 315 NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
. ......+.+|...|.+++|++ ++++|++++.||.|++|++..+..
T Consensus 304 ~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 304 F-EEEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp T-CCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred C-CcchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence 3 344566778999999999984 278999999999999999987653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=319.75 Aligned_cols=322 Identities=13% Similarity=0.135 Sum_probs=233.5
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCC--ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc--
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKP--LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-- 92 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-- 92 (612)
.+.|.+++|+|||++|++++ ++.|+|||+.++ +.+..+.+|...|++++|+|++++||+++.|+.|++||+.+++
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 46899999999999999996 899999999988 7788899999999999999999999999999999999999876
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc---eeeeecc-CCceEEEEEEcCCCCEEEEEeec
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT---TVGDFDG-HSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
.....+..|...|.+++|+|++++|++++.++ .+++|++++++ ....+.+ |...|.+++|+|+++ +|++++.
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~ 166 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR---VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCA 166 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEESSS---CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEES
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEecCC---eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeC
Confidence 13345678999999999999999999999988 46777777666 4677887 999999999999998 5999999
Q ss_pred CCeEEEEeCC------------------CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe----ee
Q 007229 169 DFLVNFYEGP------------------PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK----IG 226 (612)
Q Consensus 169 d~~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~ 226 (612)
|+.|++||+. .++++..+ +|...|.+++|+|++++|++++.|+.|++||+.+++. +.
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 245 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI 245 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence 9999999985 35566667 8999999999999999999999999999999999987 55
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc----------eeeeeeeccC
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE----------DMLVGCLWQN 296 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 296 (612)
.+ ..|..+|.+++|+|++++|++++.++ +.+|+.... ..+....+......... ....++.+.
T Consensus 246 ~~---~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 318 (377)
T 3dwl_C 246 TV---KLSQLPLRSLLWANESAIVAAGYNYS-PILLQGNES--GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT- 318 (377)
T ss_dssp CE---ECSSSCEEEEEEEETTEEEEEESSSS-EEEECCCC-----CCSBCCCSCCCCCCBSSSSSBCCCCCC--------
T ss_pred ee---cCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEeCCC--ceEEEeeecccccccccccccccccccccccccccc-
Confidence 55 48899999999999999998887655 557776211 11111111111100000 000000000
Q ss_pred CEEEEEEcCCEEEEEEcCCC-CCCceeecCcccceeEEEEEecCCc---EEEEEecCCcEEEEEc
Q 007229 297 DHLITVSLGGIISIFSASNL-DKAPLSFSGHVKNVSTLTALKISQQ---TILSSSYDGAIIKWIR 357 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg~i~~wd~ 357 (612)
.........+.... .........|...|+++.+.+..+. .+++++.||.|++||+
T Consensus 319 ------~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ------ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ------cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00011111111100 0122334569999999998743344 7999999999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-40 Score=307.57 Aligned_cols=204 Identities=10% Similarity=0.108 Sum_probs=175.1
Q ss_pred eEeccCCCceEEEEECCCCCE-EEEeeC---cCeEEEeecCCCceeeeeeeecCCCeEEEEECCC---CCEEEEEeCCCC
Q 007229 53 EFYGEHGYPVTVARYSPNGEW-IASADV---SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD---GLRIVACGDGKG 125 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~-las~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~~~ 125 (612)
..+.+|...|.+++|+|+++. +++++. |+.|+|||+.+++........|...|.+++|+|+ +++|++++.++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg- 90 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG- 90 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS-
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC-
Confidence 345789999999999999965 456665 9999999999988655555689999999999999 69999999888
Q ss_pred eeeEEEEEecCCc-eeeeeccCCceEEEEE------EcCCCCEEEEEeecCCeEEEEeCCCCe-eeeccccccc----ce
Q 007229 126 KSFVRAFMWDSGT-TVGDFDGHSRRVLSCE------FKPTRPFRIATCGEDFLVNFYEGPPFK-FKLSHREHSN----FV 193 (612)
Q Consensus 126 ~~~i~i~~~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~----~v 193 (612)
.+++|+.++++ .+..+.+|...|.+++ |+|+++ .|++++.||.|++||+.+++ ....+..|.+ .+
T Consensus 91 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 91 --NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp --CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred --eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 46788877777 8899999999999995 578888 59999999999999999887 5666655544 89
Q ss_pred EEEE----ECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec---CCCEEEEEeCCCcEEEEEe
Q 007229 194 NCIR----FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP---DGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 194 ~~~~----~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~dg~i~iw~~ 264 (612)
.+++ |+|++++|++++.||.|++||+++++..... .|...|.+++|+| +++++++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET----NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec----CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 9998 7899999999999999999999999886665 7889999999999 9999999999999999999
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=320.57 Aligned_cols=323 Identities=13% Similarity=0.147 Sum_probs=247.2
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-cccccceEEEEECC-CCCeEEEEEcCCcEEEEecCC---CCe---e
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-REHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKS---GEK---I 225 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~---~~~---~ 225 (612)
.|+|++.. +++++ .|+ .+++.+..+ .+|.+.|.+++|+| ++++|++|+.||+|++||+.+ +.. .
T Consensus 34 ~f~~~~~~-~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GGCCCCCC-CCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred hcCCcccc-ccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee
Confidence 36777773 55554 387 556777777 89999999999999 999999999999999999877 442 2
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (612)
..+ .|...|.+++|+|++++|++++.||.|++||+... ..++....+...
T Consensus 106 ~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~------------------------- 155 (437)
T 3gre_A 106 LTY----DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHY-QQESEVKFLNCE------------------------- 155 (437)
T ss_dssp EEE----ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEE-EETTEEEEEEEE-------------------------
T ss_pred eec----cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccc-cCCceeeccccc-------------------------
Confidence 333 68999999999999999999999999999998311 022333222211
Q ss_pred CEEEEEEcCCCCCCceeecC--cccceeEEEEE-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccE
Q 007229 306 GIISIFSASNLDKAPLSFSG--HVKNVSTLTAL-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382 (612)
Q Consensus 306 ~~i~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (612)
.+.-+. +.. +...+.++.+. .+++..+++++.||.|++||+++++.......
T Consensus 156 -~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------- 210 (437)
T 3gre_A 156 -CIRKIN----------LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-------------- 210 (437)
T ss_dssp -EEEEEE----------GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC--------------
T ss_pred -eeEEEE----------ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc--------------
Confidence 011111 111 55667777766 45588999999999999999887654333220
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
..+...|++++|+|++
T Consensus 211 ----------------------------------------------------------------~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 211 ----------------------------------------------------------------SPRHGAVSSICIDEEC 226 (437)
T ss_dssp ----------------------------------------------------------------CGGGCCEEEEEECTTS
T ss_pred ----------------------------------------------------------------CCCCCceEEEEECCCC
Confidence 0134568999999999
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeec-cccCceEEEEEc----CCCcEEEEEcCCCeEEEEecCCcceeeecc----
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAITVIQYS----PDVSMFASADGNREAIVWDRVSKEVKLNNM---- 533 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---- 533 (612)
++|++|+.||.|++||+++++. ...+. .|..+|++++|+ |++.+|++++.||.|++||+.+++.+....
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVL--IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEE--EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred CEEEEEcCCCeEEEEEcCCccE--EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 9999999999999999998776 45444 677899999555 578899999999999999999887653221
Q ss_pred -------------------cc--cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc-------------
Q 007229 534 -------------------LF--HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA------------- 579 (612)
Q Consensus 534 -------------------~~--~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------- 579 (612)
.+ |...|++++|+ ++++|++++.|+.|++||+.+ + ++...+.+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~-~~~~~~~~~~~~~~~~~~~~~ 381 (437)
T 3gre_A 305 QPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-L-SSSKAVISPSRFSDVFIPTQV 381 (437)
T ss_dssp CCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-G-GGCEEEECC--CCCEEEEEEE
T ss_pred CCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-c-ccceEEecccccCceEEEEEe
Confidence 12 67789999999 789999999999999999988 4 44444443
Q ss_pred ------------------------cccCeeeEEEe-c--CceEEEccCCCeEEEEE
Q 007229 580 ------------------------HLGGVYGVAFM-D--DFNVVSSGEDACIRVWR 608 (612)
Q Consensus 580 ------------------------h~~~v~~~~~~-~--~~~l~s~~~d~~i~~w~ 608 (612)
|.+.|++++|+ + +.+|++++.||.|++|+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 89999999999 5 66899999999999995
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=330.24 Aligned_cols=303 Identities=19% Similarity=0.281 Sum_probs=244.4
Q ss_pred CCCCCceeEEEEccCC-CEEEEec-CCEEEEEeCCCC-----ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 15 STERGRGILISGNPKT-DTILYCN-GRSVLIRYLDKP-----LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~-~~l~~~~-~~~i~i~~~~~~-----~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
..|++.|++++|+|++ ++|++++ |+.|++||+.+. ...+.+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4689999999999975 6888887 899999999753 34567899999999999999999999999999999999
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee---eccCCceEEEEEEcCCCC-EEE
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD---FDGHSRRVLSCEFKPTRP-FRI 163 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~l 163 (612)
+.+++ ....+.+|...|.+++|+|++++|++++.++ .+++|+......... ..+|...|.+++|+|++. ..+
T Consensus 459 ~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 459 LAAGV-STRRFVGHTKDVLSVAFSLDNRQIVSASRDR---TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp TTTTE-EEEEEECCSSCEEEEEECTTSSCEEEEETTS---CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred CCCCc-ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 99987 5567889999999999999999999999998 355555433322222 257999999999999872 369
Q ss_pred EEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
++++.|++|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+ .+...+.+++|
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~ 610 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL----EANSVIHALCF 610 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC----BCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe----cCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999988877 56678999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
+|++.++++++ ++.|++||+ .+++.+..+........... ........
T Consensus 611 sp~~~~l~~~~-~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 658 (694)
T 3dm0_A 611 SPNRYWLCAAT-EHGIKIWDL----ESKSIVEDLKVDLKAEAEKA---------------------------DNSGPAAT 658 (694)
T ss_dssp CSSSSEEEEEE-TTEEEEEET----TTTEEEEEECCCCC-----------------------------------------
T ss_pred cCCCcEEEEEc-CCCEEEEEC----CCCCChhhhccccccccccc---------------------------cccccccC
Confidence 99998777665 567999999 88888777654321100000 00000011
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
..+...+++++|++ ++++|++|+.||.|++|++.
T Consensus 659 ~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 12333467788873 28999999999999999975
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=307.39 Aligned_cols=298 Identities=16% Similarity=0.139 Sum_probs=239.1
Q ss_pred cCCceeeeeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCCCeeeeccc--ccccceEEEEECC-CCCeEEEEEc
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSP-DGSKLISVSS 210 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~ 210 (612)
+..+....+.+|...|.+++|+|++ + +|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cccceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 3455677889999999999999999 6 69999999999999999887776654 6999999999999 7899999999
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
|+.|++||+++ .....+.....+...|.+++|+|++++|++++.|+.|++||+ . ++.+
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~-~~~~---------------- 197 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL----D-GHEI---------------- 197 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET----T-SCEE----------------
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC----C-CCEE----------------
Confidence 99999999985 555555434456688999999999999999999999999998 2 2222
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
..+.+|...|.+++|++....++++++.|+.|++||+++.....
T Consensus 198 ------------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------ 241 (383)
T 3ei3_B 198 ------------------------------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN------ 241 (383)
T ss_dssp ------------------------------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT------
T ss_pred ------------------------------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc------
Confidence 33446888999999995434499999999999999987632110
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
.....+.+.
T Consensus 242 -----------------------------------------------------------------------~~~~~~~~~ 250 (383)
T 3ei3_B 242 -----------------------------------------------------------------------SYIAEMPHE 250 (383)
T ss_dssp -----------------------------------------------------------------------CEEEEEECS
T ss_pred -----------------------------------------------------------------------ceEEEecCC
Confidence 011122345
Q ss_pred ceEEEEEEcc-CCCeEEEEecCCeEEEEEccCcccccceeecccc-----------------CceEEEEEcCCCcEEEEE
Q 007229 451 FTVTACAIAP-DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHR-----------------GAITVIQYSPDVSMFASA 512 (612)
Q Consensus 451 ~~i~~~~~s~-~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~ 512 (612)
..+++++|+| ++++|++++.|+.|++||+.+++. ...+..|. +.+..++|+|++++ ++
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~ 326 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK--PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL 326 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS--CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc--ccccccccccccccccceEEeccCCCCceEEEecCCccc--cc
Confidence 5799999999 999999999999999999988765 23333332 34455777777777 78
Q ss_pred cCCCeEEEEecCCcceeeecccc--cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 513 DGNREAIVWDRVSKEVKLNNMLF--HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+.|+.|++||+.+++.+. .+.+ |...+..++|+|++++|++++ |+.|++||+++
T Consensus 327 s~d~~i~iwd~~~~~~~~-~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 327 NDKRTIDIYDANSGGLVH-QLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCCCEEEEETTTCCEEE-EECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCCeEEEEecCCCceee-eecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 899999999999998864 4544 567788889999999999997 99999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-40 Score=305.27 Aligned_cols=295 Identities=12% Similarity=0.062 Sum_probs=217.7
Q ss_pred ceeEEEEccCCCEEEEecC--------CEEEEEeCCCCcee----------eEeccCCCceEEEEECCCCCEEEEee---
Q 007229 20 RGILISGNPKTDTILYCNG--------RSVLIRYLDKPLHV----------EFYGEHGYPVTVARYSPNGEWIASAD--- 78 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~--------~~i~i~~~~~~~~~----------~~~~~h~~~v~~~~~s~d~~~las~~--- 78 (612)
.|.+++|+|||++|++|++ +.|++|++..+... ..+.+|+..|.+++++ ++.+++|.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence 5899999999999999863 36999998755321 2367888999888765 45677664
Q ss_pred --------CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceE
Q 007229 79 --------VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRV 150 (612)
Q Consensus 79 --------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v 150 (612)
.|+.+++|++........... ... ......+...+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------~~~------------------------------~~~~~~~~~~~ 136 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLT-------SVD------------------------------FDASTNADDYT 136 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEE-------EEC------------------------------SSCCCCTTCCE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEee-------eec------------------------------eeecCCcccCE
Confidence 455666666654432111000 000 01123355678
Q ss_pred EEEEEcCCCCEE-EEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 151 LSCEFKPTRPFR-IATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 151 ~~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
.+++|+|||+++ +++++.|++|++||+++++++..+. |...|.+++|+|||++|++++. +.+++|+..+++......
T Consensus 137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKT 214 (365)
T ss_dssp EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeee
Confidence 899999999963 2356689999999999999988875 7788999999999999999875 567777777777765432
Q ss_pred ccCCccccEEEEEEecCCCEEEEEeCCC----cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVSADK----SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (612)
...|...|.+++|+|+++++++++.|+ .+++|++ ........
T Consensus 215 -~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~----~~~~~~~~----------------------------- 260 (365)
T 4h5i_A 215 -DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI----KSGNTSVL----------------------------- 260 (365)
T ss_dssp -CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE----ETTEEEEE-----------------------------
T ss_pred -cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc----ccceecce-----------------------------
Confidence 237888999999999999999998876 4666665 11110000
Q ss_pred CEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEE
Q 007229 306 GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFT 385 (612)
Q Consensus 306 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 385 (612)
...
T Consensus 261 -----------------------------------------------~~~------------------------------ 263 (365)
T 4h5i_A 261 -----------------------------------------------RSK------------------------------ 263 (365)
T ss_dssp -----------------------------------------------EEE------------------------------
T ss_pred -----------------------------------------------eee------------------------------
Confidence 000
Q ss_pred ecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE
Q 007229 386 AGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA 465 (612)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 465 (612)
....+...|++++|+|||++|
T Consensus 264 -----------------------------------------------------------~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 264 -----------------------------------------------------------QVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp -----------------------------------------------------------EEESSCSCEEEEEECTTSCEE
T ss_pred -----------------------------------------------------------eecCCCCCeEeEEECCCCCce
Confidence 000122358899999999999
Q ss_pred EEEecCCeEEEEEccCccccccee-eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 466 IVGGQNGKLHIYSISGNTLTEEMV-LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 466 ~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
|+|+.|+.|+|||+.++++ ... +.+|..+|++++|||||++||+++.|++|+|||+....
T Consensus 285 asgs~D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSM--SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEETTSCEEEEETTTTEE--EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EEEcCCCEEEEEECCCCcE--EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 9999999999999998876 444 57899999999999999999999999999999996543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=306.93 Aligned_cols=304 Identities=19% Similarity=0.240 Sum_probs=240.0
Q ss_pred eccCCCc--eEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 55 YGEHGYP--VTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 55 ~~~h~~~--v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
..+|... +.+++|++ ..+++++.|+.|++||+.+++........|...|.+++|+|++++|++++.++ .+.+|
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw 161 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG---LVDIY 161 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS---CEEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC---eEEEE
Confidence 3356554 44566665 45778889999999999999854433344889999999999999999999888 57888
Q ss_pred EecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC-CCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 133 MWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP-PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
+.++++.+..+.+|...|.+++|++ . .+++++.||.|++||+. .......+.+|...|.+++|+|++++|++++.|
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECcCCeEEEEecCCCCceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 8889999999999999999999954 4 69999999999999998 566677788999999999999999999999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC-EEEEEe--CCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
+.|++||+.+++....+ ..|...|.+++|+|++. ++++++ .|+.|++||+ .+++.+..+.
T Consensus 239 ~~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~----~~~~~~~~~~---------- 301 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTK---TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA----ATGARVNTVD---------- 301 (401)
T ss_dssp SCEEEEETTCSSEEEEE---CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET----TTCCEEEEEE----------
T ss_pred CeEEEccCCCCCccEEe---cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC----CCCCEEEEEe----------
Confidence 99999999999888877 37899999999999765 445544 6999999998 4333222110
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEccCCCeEEE--EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc
Q 007229 449 LGFTVTACAIAPDGSEAIV--GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK 526 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~ 526 (612)
+...+.+++|+|+++++++ |+.||.|++||+.++.......+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 1124778999999999999 55899999999998777656678899999999999999999999999999999999998
Q ss_pred ceeeecccccccceeEE
Q 007229 527 EVKLNNMLFHTARINCL 543 (612)
Q Consensus 527 ~~~~~~~~~~~~~i~~~ 543 (612)
+.+......+..+...+
T Consensus 382 ~~~~~~~~~~~~~~~~i 398 (401)
T 4aez_A 382 DHVKRPIPITKTPSSSI 398 (401)
T ss_dssp -----------------
T ss_pred ccccccccccCCCccce
Confidence 87654444344444443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=297.37 Aligned_cols=290 Identities=18% Similarity=0.227 Sum_probs=244.9
Q ss_pred CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEE
Q 007229 136 SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL 215 (612)
Q Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 215 (612)
..+....+.+|...|.+++| |+++ ++++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 34677889999999999999 8888 599999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+|++..............|...|.+++| +++++++++.||.|++||. ++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~------~~~~--------------------- 135 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE------GSLV--------------------- 135 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET------TEEE---------------------
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC------CcEE---------------------
Confidence 9998775432222222589999999999 5779999999999999984 2222
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
..+..|...+.++.+.+.+++.+++++.||.|++||.... ....
T Consensus 136 -------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~--------- 179 (313)
T 3odt_A 136 -------------------------YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV--IKTF--------- 179 (313)
T ss_dssp -------------------------EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE--EEEE---------
T ss_pred -------------------------EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce--EEEE---------
Confidence 2344578889999998767899999999999999983211 1110
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
...+...+.+
T Consensus 180 ----------------------------------------------------------------------~~~~~~~i~~ 189 (313)
T 3odt_A 180 ----------------------------------------------------------------------SGIHNDVVRH 189 (313)
T ss_dssp ----------------------------------------------------------------------CSSCSSCEEE
T ss_pred ----------------------------------------------------------------------eccCcccEEE
Confidence 0113346899
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF 535 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 535 (612)
++|+|++. +++++.||.|++||+.+++. ...+..|..+|++++|+|++ .|++++.||.|++||+.+++.. ..+..
T Consensus 190 ~~~~~~~~-~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~ 264 (313)
T 3odt_A 190 LAVVDDGH-FISCSNDGLIKLVDMHTGDV--LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLK-QVITL 264 (313)
T ss_dssp EEEEETTE-EEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEE-EEEEC
T ss_pred EEEcCCCe-EEEccCCCeEEEEECCchhh--hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCcee-EEEec
Confidence 99999998 99999999999999998876 67788899999999999999 6889999999999999999886 55677
Q ss_pred cccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 536 ~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|..+|.+++|+|+++ +++++.||.|++||+++
T Consensus 265 ~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 265 PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp SSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 899999999999998 66789999999999987
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=315.83 Aligned_cols=262 Identities=10% Similarity=-0.000 Sum_probs=208.4
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
+....|.+++|||||+++|+++ |++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+.+... +
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L 79 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence 4567899999999999999998 78888 755554 447999999999999999 46666666554332 1
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCc-----eEEEEEEcCCCCEEEEEeecC
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR-----RVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d 169 (612)
. .+ .|...|.+++|||||++||+++.++. +..|+....+..+. |.. .|.+++|||+|+ +|++|+.|
T Consensus 80 ~-~~-~~~~~V~~vawSPdG~~LAs~s~dg~-----V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~D 150 (588)
T 2j04_A 80 L-NS-QPVCYPRVCKPSPIDDWMAVLSNNGN-----VSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNED 150 (588)
T ss_dssp S-TT-SCSCCEEEEEECSSSSCEEEEETTSC-----EEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETT
T ss_pred e-ec-CCCCcEEEEEECCCCCEEEEEeCCCc-----EEEEeCCceeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCC
Confidence 1 22 45889999999999999999999983 44555444777777 766 499999999999 59999999
Q ss_pred CeEEEEeCCCCee-------eecc----cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee---eeeeccCCcc
Q 007229 170 FLVNFYEGPPFKF-------KLSH----REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI---GEFSSEDGHH 235 (612)
Q Consensus 170 ~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~ 235 (612)
|+|++||+.++.. +.++ .+|...|.+++|+||| +++++.|+++++||+.+++.. ..+ ..+|.
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL--~~~h~ 226 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI--QNASR 226 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE--ECCCS
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee--ccccc
Confidence 9999999998753 4554 6788999999999999 888899999999999887743 233 12678
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
..|.+++|+ ++.+++++ +++|++||+ .+++...
T Consensus 227 ~~V~svaFs--g~~LASa~-~~tIkLWd~----~~~~~~~---------------------------------------- 259 (588)
T 2j04_A 227 RKITDLKIV--DYKVVLTC-PGYVHKIDL----KNYSISS---------------------------------------- 259 (588)
T ss_dssp SCCCCEEEE--TTEEEEEC-SSEEEEEET----TTTEEEE----------------------------------------
T ss_pred CcEEEEEEE--CCEEEEEe-CCeEEEEEC----CCCeEEE----------------------------------------
Confidence 899999999 68888887 699999998 4444321
Q ss_pred CCCCceeecCcccceeEEEE--EecCCcEEEEEecCCcEEEEEcC
Q 007229 316 LDKAPLSFSGHVKNVSTLTA--LKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
...+|...+..+++ + +++..+++++.+|+ ++|..+
T Consensus 260 ------~~~gh~~~V~~va~~~s-~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 260 ------LKTGSLENFHIIPLNHE-KESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ------EECSCCSCCCEEEETTC-SSCEEEEECSSCEE-EEEESS
T ss_pred ------EEcCCCceEEEEEeeeC-CCCCEEEEEcCCCC-EEEeec
Confidence 11258899999999 5 33678999999999 999765
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=317.08 Aligned_cols=298 Identities=15% Similarity=0.167 Sum_probs=231.6
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECC-CCCeEEEEEcCCcEE
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGL 215 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 215 (612)
......+|...|++++|+|.++.+||+|+.||.|++||+.+++. ...+.+|.+.|.+++|+| ++++|++++.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34455678999999999996554799999999999999987654 345678999999999998 688999999999999
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
+||++++... .+.....+...+.+++|+|++++|++++.||.|++||+ .. +.
T Consensus 191 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~----~~-~~---------------------- 242 (435)
T 4e54_B 191 LQDFKGNILR-VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM----DG-KE---------------------- 242 (435)
T ss_dssp EEETTSCEEE-EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES----SS-CB----------------------
T ss_pred EeeccCCcee-EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc----Cc-ce----------------------
Confidence 9999765443 33222345567889999999999999999999999998 32 11
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
+..+.+|...|.+++|++....++++++.|+.|++||++........
T Consensus 243 ------------------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~--------- 289 (435)
T 4e54_B 243 ------------------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF--------- 289 (435)
T ss_dssp ------------------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC---------
T ss_pred ------------------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE---------
Confidence 23456789999999999655678999999999999998765432211
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
.....|...|++
T Consensus 290 --------------------------------------------------------------------~~~~~h~~~v~~ 301 (435)
T 4e54_B 290 --------------------------------------------------------------------LYSLPHRHPVNA 301 (435)
T ss_dssp --------------------------------------------------------------------SBCCBCSSCEEE
T ss_pred --------------------------------------------------------------------EEeeeccccccc
Confidence 111224567999
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccC------ceEEEEEcCCCcEEEEEc------------CCCe
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG------AITVIQYSPDVSMFASAD------------GNRE 517 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~------------~d~~ 517 (612)
++|+|++++|++++.||.|++||+.++.. ...+..|.. .+....|+|++.+++++. .++.
T Consensus 302 ~~~spdg~~l~s~~~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 302 ACFSPDGARLLTTDQKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp CCBCTTSSEEEEEESSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred eeECCCCCeeEEEcCCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 99999999999999999999999988765 233333321 123345666666655553 3467
Q ss_pred EEEEecCCcceeeecccccccceeEE-EecCCCcEEEEeecCcEEEEEEccC
Q 007229 518 AIVWDRVSKEVKLNNMLFHTARINCL-AWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 518 i~iwd~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|++||..+++.+.....+|...|.++ +|+|+|++||+|+ |+.|+||++++
T Consensus 380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 99999999998866677899999988 6999999999886 78899999987
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=292.94 Aligned_cols=246 Identities=20% Similarity=0.307 Sum_probs=211.2
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCC--CceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeecC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDK--PLHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~~ 89 (612)
..|.+.|.+++|+|||++||+++ |+.|+|||+++ ++.+..+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 45788999999999999999998 89999999974 3677889999999999999874 8999999999999999999
Q ss_pred CCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCC------
Q 007229 90 NGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPT------ 158 (612)
Q Consensus 90 ~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~------ 158 (612)
+++. ....+..|...|.+++|+|+ +.+|++++.++ .+++|++..+. ....+.+|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC---cEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 8742 33456789999999999998 89999999998 57888877553 24667899999999999997
Q ss_pred -------CCEEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECCCC---CeEEEEEcCCcEEEEecCCCCe
Q 007229 159 -------RPFRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSPDG---SKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 159 -------~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
++ +|++|+.|++|++||+.+++ ....+.+|...|.+++|+|++ ++|++++.|++|++||++++..
T Consensus 163 ~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 163 EHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp -------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 34 69999999999999988765 566788999999999999985 7999999999999999987532
Q ss_pred --eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 225 --IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 225 --~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.........|...|.+++|+|++++|++++.||.|++|+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 1112111367889999999999999999999999999998
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=292.75 Aligned_cols=289 Identities=15% Similarity=0.215 Sum_probs=245.1
Q ss_pred CceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 49 ~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.+..+.+.+|.+.|++++| |++++||+++.||.|++||+.+++ ....+..|...|.+++|+|++++|++++.++ .
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~ 82 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-LGTVVYTGQGFLNSVCYDSEKELLLFGGKDT---M 82 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-EEEEEEECSSCEEEEEEETTTTEEEEEETTS---C
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-EEEEeecCCccEEEEEECCCCCEEEEecCCC---e
Confidence 3667889999999999999 999999999999999999998877 5667889999999999999999999999998 4
Q ss_pred EEEEEec---CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECC-CCCe
Q 007229 129 VRAFMWD---SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP-DGSK 204 (612)
Q Consensus 129 i~i~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 204 (612)
+.+|... .++.+..+.+|...|.+++|. ++ .+++++.|+.|++|| .++....+..|...+.+++|+| ++++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence 5666655 346788899999999999994 45 699999999999999 6777888889999999999998 8999
Q ss_pred EEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 205 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
+++++.|+.|++|| .++....+. ..|...+.+++|+|++. +++++.||.|++||+ .+++.+..+..
T Consensus 158 l~~~~~d~~i~i~d--~~~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~----~~~~~~~~~~~----- 223 (313)
T 3odt_A 158 FLTASADKTIKLWQ--NDKVIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM----HTGDVLRTYEG----- 223 (313)
T ss_dssp EEEEETTSCEEEEE--TTEEEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSEEEEEET----TTCCEEEEEEC-----
T ss_pred EEEEECCCCEEEEe--cCceEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCeEEEEEC----Cchhhhhhhhc-----
Confidence 99999999999999 445555552 24889999999999998 889999999999998 43332221110
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (313)
T 3odt_A 224 -------------------------------------------------------------------------------- 223 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 224 -------------------------------------------------------------------------------- 223 (313)
T 3odt_A 224 -------------------------------------------------------------------------------- 223 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
+...+++++|+|++ .+++++.||.|++||+.+++. ...+..|..+|.+++|+|+++ +++++.||.|++||+.
T Consensus 224 ----~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 224 ----HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL--KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ----CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE--EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred ----CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce--eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 11247788999998 688999999999999998876 677788999999999999998 5678899999999999
Q ss_pred Cccee
Q 007229 525 SKEVK 529 (612)
Q Consensus 525 ~~~~~ 529 (612)
+++..
T Consensus 296 ~~~~~ 300 (313)
T 3odt_A 296 KSRWA 300 (313)
T ss_dssp GGGCC
T ss_pred CCcee
Confidence 88765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=304.20 Aligned_cols=307 Identities=16% Similarity=0.216 Sum_probs=240.1
Q ss_pred eEeccCCCceEEEEECCC----CCEEEEeeCcCeEEEeecCCCceeeeeeee-----cCCCeEEEEECCC----CCEEEE
Q 007229 53 EFYGEHGYPVTVARYSPN----GEWIASADVSGSVRIWGTHNGFVLKNEFKV-----LSGRIDDLQWSPD----GLRIVA 119 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d----~~~las~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~s~~----~~~l~~ 119 (612)
....+|...|++++|+|+ ...+++++.++.|++||+.+++.+ ..+.. |...|.+++|+|+ +++|++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 345689999999999984 455666666779999999987743 34443 5578999999999 678999
Q ss_pred EeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCeeeecc---cccccceEE
Q 007229 120 CGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFKFKLSH---REHSNFVNC 195 (612)
Q Consensus 120 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~ 195 (612)
++.++ .+.+|+.++++.+..+.+|...|.+++|+| ++. ++++++.||.|++||+.+++.+..+ .+|...|.+
T Consensus 91 ~~~dg---~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 91 AGSRG---IIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166 (366)
T ss_dssp EETTC---EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred ecCCC---EEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence 99888 578888889999999999999999999999 777 6999999999999999999988887 789999999
Q ss_pred EEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee-------------------------ccCCccccEEEEEEecCCCEE
Q 007229 196 IRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS-------------------------SEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~v~~i~~~~~~~~l 250 (612)
++|+|++++|++++.||.|++||+++++....+. ....|...|.+++|+ ++++
T Consensus 167 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 167 ADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred EEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 9999999999999999999999999876554331 112378888889888 6788
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccce
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v 330 (612)
++++.||.|++||+ ...... ......+...+
T Consensus 245 ~~~~~d~~i~~wd~----~~~~~~---------------------------------------------~~~~~~~~~~~ 275 (366)
T 3k26_A 245 LSKSCENAIVCWKP----GKMEDD---------------------------------------------IDKIKPSESNV 275 (366)
T ss_dssp EEECSSSEEEEEEE----SSTTCC---------------------------------------------GGGCCTTCCCE
T ss_pred EEEecCCEEEEEeC----CCcccc---------------------------------------------ccccccCCcch
Confidence 88888999999988 332211 11111111111
Q ss_pred eEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceecc
Q 007229 331 STLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 331 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
..+...
T Consensus 276 ~~~~~~-------------------------------------------------------------------------- 281 (366)
T 3k26_A 276 TILGRF-------------------------------------------------------------------------- 281 (366)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred heeccc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC--CCeEEEEecCCeEEEEEccCcccc--c
Q 007229 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD--GSEAIVGGQNGKLHIYSISGNTLT--E 486 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~v~i~d~~~~~~~--~ 486 (612)
..+...+++++|+|+ +++|++|+.||.|++||+.+++.. .
T Consensus 282 ------------------------------------~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 282 ------------------------------------DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp ------------------------------------ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred ------------------------------------cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 002234777889998 999999999999999999987642 2
Q ss_pred ceeeccc--cCceEEEEEcCCCcEEEEEcCCCeEEEEecCC
Q 007229 487 EMVLEKH--RGAITVIQYSPDVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 487 ~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 525 (612)
...+..| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 2356666 79999999999999999999999999999853
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=304.47 Aligned_cols=308 Identities=16% Similarity=0.133 Sum_probs=255.0
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc------eeeEeccCCCceEEEEECCC----C---CEEEEeeC
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL------HVEFYGEHGYPVTVARYSPN----G---EWIASADV 79 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~------~~~~~~~h~~~v~~~~~s~d----~---~~las~~~ 79 (612)
...|.+.|++++|+| ++|++++ ++.|++||+.+++ .+..+.+|...|++++|+|+ + ++|++++.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 346889999999999 7888887 8999999999988 77888899999999999999 9 99999999
Q ss_pred cCeEEEeecCCCce----eeeeeeec-----CCCeEEEEEC----CCCCE-EEEEeCCCCeeeEEEEEecC------Cce
Q 007229 80 SGSVRIWGTHNGFV----LKNEFKVL-----SGRIDDLQWS----PDGLR-IVACGDGKGKSFVRAFMWDS------GTT 139 (612)
Q Consensus 80 d~~i~iwd~~~~~~----~~~~~~~~-----~~~i~~~~~s----~~~~~-l~~~~~~~~~~~i~i~~~~~------~~~ 139 (612)
||.|++||+.+++. ....+..| ...|.+++|+ |++++ |++++.++ .+.+|+..+ ++.
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---TTYIWKFHPFADESNSLT 166 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS---CEEEEEEESSSSHHHHTT
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC---cEEEEeCCccccccccce
Confidence 99999999998873 15567778 5899999999 99999 99999887 578888888 777
Q ss_pred ee-----ee-------ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc---c---ccceEEEEECCC
Q 007229 140 VG-----DF-------DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE---H---SNFVNCIRFSPD 201 (612)
Q Consensus 140 ~~-----~~-------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~---~~~v~~~~~s~~ 201 (612)
+. .+ ..|...|.+++|+|++ ++++++.|+.|++||+.+++.+..+.. | ...|.+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 66 77 4589999999999999 599999999999999999999999988 9 999999999999
Q ss_pred CCeEEEEEcC---CcEEEEecCCCCeeeeeeccCC-------------ccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 202 GSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDG-------------HHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 202 ~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
+++|++++.| +.|++||+.+++.+..+. . |...|.+++|+|++++|++++.||.|++||+
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~- 320 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLS---VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV- 320 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEEC---BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET-
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceec---cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc-
Confidence 9999999999 999999999999888883 4 8999999999999999999999999999999
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCC-----
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ----- 340 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 340 (612)
.+++.+..+.......... . ............|...|.+++|++...
T Consensus 321 ---~~~~~~~~~~~~~~~~~~~----------------~---------~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~ 372 (397)
T 1sq9_A 321 ---KTKERITTLNMHCDDIEIE----------------E---------DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372 (397)
T ss_dssp ---TTTEEEEEEECCGGGCSSG----------------G---------GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred ---CCCceeEEEecccCcccch----------------h---------hhhccccccccccCCceeEEEecccccccccc
Confidence 8888887776211000000 0 000001122344689999999995321
Q ss_pred ----cEEEEEecCCcEEEEEcCCc
Q 007229 341 ----QTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 341 ----~~l~~~~~dg~i~~wd~~~~ 360 (612)
.++++++.||.|++|+++++
T Consensus 373 ~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 373 ADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=311.75 Aligned_cols=202 Identities=13% Similarity=0.165 Sum_probs=171.0
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc-eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
+..|.++|++++|+|++++||+++.|+.|+|||+.++. .....+.+|...|.+++|+|++++|++++.++ .+++|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR---NAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS---SEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC---eEEEEE
Confidence 44577899999999999999999999999999999873 36668889999999999999999999999988 467777
Q ss_pred ecCCc---eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe---eeecccc-cccceEEEEECCCCCeEE
Q 007229 134 WDSGT---TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK---FKLSHRE-HSNFVNCIRFSPDGSKLI 206 (612)
Q Consensus 134 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~ 206 (612)
.++++ ....+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |...|.+++|+|++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 77766 6778889999999999999999 59999999999999999887 3566777 999999999999999999
Q ss_pred EEEcCCcEEEEecCCC------------------CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 207 SVSSDRKGLIYDGKSG------------------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+++.|+.|++||+..+ +.+..+ .|...|.+++|+|++++|++++.||.|++||+
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 9999999999998632 333333 78999999999999999999999999999999
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=307.70 Aligned_cols=359 Identities=13% Similarity=0.122 Sum_probs=249.5
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCeeeeccc-------------ccccceE
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------------EHSNFVN 194 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------------~~~~~v~ 194 (612)
+++|.++.++....+.+|.+.|.+++|+| +++ +|++++.||.|++||+.+++....+. +|...|.
T Consensus 25 ~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (408)
T 4a11_B 25 RRVLGLELNKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE 103 (408)
T ss_dssp HHHHTEEECTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred ceeeccccCcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence 35667777888888999999999999999 888 59999999999999999887665543 5999999
Q ss_pred EEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC---CCEEEEEeCCCcEEEEEeecCCCC
Q 007229 195 CIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD---GKKVLTVSADKSAKVWEILEDGSG 270 (612)
Q Consensus 195 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~ 270 (612)
+++|+| ++++|++++.||.|++||+.+++....+ .+...+.++.|+|. +.++++++.||.|++||+ .+
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~----~~ 175 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL----KS 175 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES----SS
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec----cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC----CC
Confidence 999999 7789999999999999999999998888 57788999999984 449999999999999998 54
Q ss_pred CeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCC
Q 007229 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
++.+ ..+.+|...|.+++|++....++++++.||
T Consensus 176 ~~~~----------------------------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 176 GSCS----------------------------------------------HILQGHRQEILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp SCCC----------------------------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred ccee----------------------------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence 4333 334568889999999964445799999999
Q ss_pred cEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEE
Q 007229 351 AIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVS 430 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (612)
.|++||++........ ++.......
T Consensus 210 ~i~i~d~~~~~~~~~~----------------------------~~~~~~~~~--------------------------- 234 (408)
T 4a11_B 210 RVKLWDVRRASGCLIT----------------------------LDQHNGKKS--------------------------- 234 (408)
T ss_dssp CEEEEETTCSSCCSEE----------------------------CCTTTTCSC---------------------------
T ss_pred cEEEEECCCCCccccc----------------------------ccccccccc---------------------------
Confidence 9999999875421111 000000000
Q ss_pred eeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec---cccCceEEEEEcCCCc
Q 007229 431 TESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE---KHRGAITVIQYSPDVS 507 (612)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~ 507 (612)
.........+...|.+++|+|++++|++++.||.|++||+.+++........ .....+........+.
T Consensus 235 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 235 ---------QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp ---------CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred ---------eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence 0000011225567999999999999999999999999999987652221111 1112222233334556
Q ss_pred EEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeE
Q 007229 508 MFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGV 587 (612)
Q Consensus 508 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 587 (612)
.+++++.|+.|++||+.+++.+ ..+.+|...|++++|+|++++|++++.||.|++||+++ . +.+.....+.. ...+
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~-~~~~~~~~~~~-~~~~ 381 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQI-TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL-Y-EPVPDDDETTT-KSQL 381 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCEE-EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------
T ss_pred eEEEEecCCEEEEEECcCCcce-eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC-C-CccCCCCceEe-cccc
Confidence 7777788999999999999887 56778999999999999999999999999999999998 4 44433332221 2222
Q ss_pred EEecCceEEEccCCCeEEEEEec
Q 007229 588 AFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 588 ~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
.......+.+.+.|+.+++|+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 382 NPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------------
T ss_pred ccccceeecccCccCceeecCCc
Confidence 22244556778889999999864
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=311.61 Aligned_cols=287 Identities=16% Similarity=0.201 Sum_probs=221.8
Q ss_pred CCCceeEEEEcc-CCCEEEEec-CCEEEEEeCCCCceee--EeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCC
Q 007229 17 ERGRGILISGNP-KTDTILYCN-GRSVLIRYLDKPLHVE--FYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 17 ~~~~v~~~~~s~-d~~~l~~~~-~~~i~i~~~~~~~~~~--~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~ 91 (612)
+..+|+|++|+| ++++||+|+ +|.|+|||+.+++... .+.+|.+.|++++|+| ++++|++++.||+|++||+.++
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 566899999999 567899987 8999999998776443 4568999999999998 7899999999999999999876
Q ss_pred ceeeeeeee--cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FVLKNEFKV--LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. +...... +...+.+++|+|++++|++++.++ .+.+|+. .++.+..+.+|...|.+++|+|+++.++++|+.|
T Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~i~~wd~-~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 198 I-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVG---NVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp E-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSS---BEEEEES-SSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred c-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCC---cEeeecc-CcceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 4 3222222 334678999999999999999888 4566665 4567888999999999999999998789999999
Q ss_pred CeEEEEeCCCCeeeec---ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc------ccEEE
Q 007229 170 FLVNFYEGPPFKFKLS---HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH------GSIYA 240 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~v~~ 240 (612)
+.|++||+.+.+.... ..+|...|.+++|+|+|++|++++.||.|++||+.+++....+. .|. ..+..
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~ 349 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI---PHPHRHFQHLTPIK 349 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC---CCCCCCCSSSCCCB
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe---cccccccccceeEE
Confidence 9999999988765443 35799999999999999999999999999999999988776652 222 12344
Q ss_pred EEEecCCCEEEEEeC------------CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 241 VSWSPDGKKVLTVSA------------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 241 i~~~~~~~~l~~~~~------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
..|+|++..++++.. ++.|++||. .+++.+..+
T Consensus 350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~----~~g~~~~~l------------------------------- 394 (435)
T 4e54_B 350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG----NSGKMMCQL------------------------------- 394 (435)
T ss_dssp CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS----SSCCEEEEE-------------------------------
T ss_pred EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC----CCCcEEEEE-------------------------------
Confidence 567777777766642 235666666 444444332
Q ss_pred EEEEcCCCCCCceeecCcccceeEEE-EEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLT-ALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
..+|...|.++. |+ +++.+|++|+ |+.|++|+++.++.
T Consensus 395 --------------~~~~~~~v~s~~~fs-pdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 395 --------------YDPESSGISSLNEFN-PMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp --------------CCSSCCCCCCEEEEC-TTSSCEEEEC-SSEEEECCCC----
T ss_pred --------------eCCCCCcEEEEEEEC-CCCCEEEEEc-CCcEEEEECCcCee
Confidence 235777777774 55 3377888765 78999999987754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=304.41 Aligned_cols=351 Identities=16% Similarity=0.213 Sum_probs=255.1
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCceeeeee------------eecCCC
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEF------------KVLSGR 104 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~ 104 (612)
++.+++|+++.++....+.+|.+.|++++|+| ++++||+++.||.|++||+.+++...... .+|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45677888888888888999999999999999 99999999999999999999876432111 249999
Q ss_pred eEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC--EEEEEeecCCeEEEEeCCCCe
Q 007229 105 IDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP--FRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 105 i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~ 181 (612)
|.+++|+| ++++|++++.++ .+++|+.++++.+..+. +...+.++.|+|.+. .++++++.|+.|++||+.+++
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDK---TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTS---EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred EEEEEEccCCCcEEEEEeCCC---eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 99999999 778999999887 57888888888887776 788899999998543 159999999999999999999
Q ss_pred eeecccccccceEEEEECCCCCe-EEEEEcCCcEEEEecCCCCe-eeeee------------ccCCccccEEEEEEecCC
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSK-LISVSSDRKGLIYDGKSGEK-IGEFS------------SEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~-~~~~~------------~~~~~~~~v~~i~~~~~~ 247 (612)
.+..+.+|...|.+++|+|++++ +++++.||.|++||++++.. ...+. ....|...|.+++|+|++
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 99999999999999999999984 88999999999999987652 22221 013688999999999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc-ceeeeee-eccCCEEEEEEcCCEEEEEEcCCCCCCceeecC
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV-EDMLVGC-LWQNDHLITVSLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
++|++++.||.|++||+ .+++....+........ ....... ......+++++.++.+++|++.. ......+.+
T Consensus 258 ~~l~~~~~dg~i~vwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~ 332 (408)
T 4a11_B 258 LHLLTVGTDNRMRLWNS----SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS-GEQITMLKG 332 (408)
T ss_dssp SEEEEEETTSCEEEEET----TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT-CCEEEEECC
T ss_pred CEEEEecCCCeEEEEEC----CCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC-Ccceeeecc
Confidence 99999999999999999 66665444332221111 1111111 22367788889999999999765 456678889
Q ss_pred cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-eccEEEEecCCCeEEEEecCC
Q 007229 326 HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLCE 399 (612)
Q Consensus 326 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~~ 399 (612)
|...|.+++|++. +.+|++++.||.|++||+.+.+........... ..+.. ........+.++.+++|+.+.
T Consensus 333 ~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 333 HYKTVDCCVFQSN-FQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp CSSCEEEEEEETT-TTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred CCCeEEEEEEcCC-CCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccccccceeecccCccCceeecCCcc
Confidence 9999999999932 789999999999999999998776544322222 22333 445566777889999998653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=295.83 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=240.3
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEecc-CCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGE-HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
.+.+++|++ +.+++.+.++.|++||+.+++....+.. |...|++++|+|++++||+|+.||.|++||+.+++ ....+
T Consensus 95 ~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 172 (401)
T 4aez_A 95 YLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-KLRTM 172 (401)
T ss_dssp TCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEE
T ss_pred eEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-EEEEe
Confidence 355677776 3455555699999999999998877765 89999999999999999999999999999999988 55578
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 177 (612)
..|...|.+++| ++++|++++.++ .+.+|+.. .+..+..+.+|...|.+++|+|+++ .+++++.|+.|++||+
T Consensus 173 ~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 173 AGHQARVGCLSW--NRHVLSSGSRSG---AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDA 246 (401)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred cCCCCceEEEEE--CCCEEEEEcCCC---CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccC
Confidence 899999999999 567999999988 56777777 5777889999999999999999999 5999999999999999
Q ss_pred CCCeeeecccccccceEEEEECCCCCeE-EEEE--cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 178 PPFKFKLSHREHSNFVNCIRFSPDGSKL-ISVS--SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
.+++....+.+|...|.+++|+|++..+ ++++ .|+.|++||+.+++.+..+ .+...+.+++|+|+++++++++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV----DAGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEECSSSSEEEEEE
T ss_pred CCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE----eCCCcEEEEEECCCCCeEEEEe
Confidence 9999999999999999999999977544 5544 6999999999999999888 5778899999999999999954
Q ss_pred --CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 255 --ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 255 --~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
.||.|++|++ .+++..... .+.+|...|.+
T Consensus 323 g~~dg~i~v~~~----~~~~~~~~~--------------------------------------------~~~~h~~~v~~ 354 (401)
T 4aez_A 323 GFPDNNLSIWSY----SSSGLTKQV--------------------------------------------DIPAHDTRVLY 354 (401)
T ss_dssp CTTTCEEEEEEE----ETTEEEEEE--------------------------------------------EEECCSSCCCE
T ss_pred ecCCCcEEEEec----CCccceeEE--------------------------------------------EecCCCCCEEE
Confidence 8999999999 554433322 23468889999
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
++|++ ++.++++++.||.|++|++.+++....
T Consensus 355 ~~~s~-dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 355 SALSP-DGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEECT-TSSEEEEECTTSEEEEEECCC------
T ss_pred EEECC-CCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99983 288999999999999999998776553
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=300.70 Aligned_cols=287 Identities=17% Similarity=0.263 Sum_probs=242.4
Q ss_pred CCCCCceeEEEEccC---CC--EEEEecCCEEEEEeCCCCceeeEecc-----CCCceEEEEECCC----CCEEEEeeCc
Q 007229 15 STERGRGILISGNPK---TD--TILYCNGRSVLIRYLDKPLHVEFYGE-----HGYPVTVARYSPN----GEWIASADVS 80 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d---~~--~l~~~~~~~i~i~~~~~~~~~~~~~~-----h~~~v~~~~~s~d----~~~las~~~d 80 (612)
..|.+.|.+++|+|+ +. ++++++++.|++||+.+++.+..+.. |...|++++|+|+ +++|++|+.|
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence 367899999999984 43 55556688999999998887776654 5578999999999 7799999999
Q ss_pred CeEEEeecCCCceeeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCCceeeee---ccCCceEEEEEEc
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSGTTVGDF---DGHSRRVLSCEFK 156 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~ 156 (612)
|.|++||+.+++ ....+..|...|.+++|+| ++++|++++.++ .+++|+.++++.+..+ .+|...|.+++|+
T Consensus 95 g~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 95 GIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDH---ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp CEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTS---CEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred CEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCC---eEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999988 5557888999999999999 999999999988 5788888889988888 7899999999999
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeecccc----------------------------cccceEEEEECCCCCeEEEE
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE----------------------------HSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------------------~~~~v~~~~~s~~~~~l~~~ 208 (612)
|+++ .+++++.||.|++||+.+++....+.. |...|.+++|+ +++|+++
T Consensus 171 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 171 LLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp TTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 9999 599999999999999998876655544 99999999999 7799999
Q ss_pred EcCCcEEEEecCCCCe--------------eeeeeccCCccccEEEEEEecC--CCEEEEEeCCCcEEEEEeecCCCCCe
Q 007229 209 SSDRKGLIYDGKSGEK--------------IGEFSSEDGHHGSIYAVSWSPD--GKKVLTVSADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 209 ~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~ 272 (612)
+.|+.|++||+.+++. +..+ ..|...|.+++|+|+ +++|++++.||.|++||+ ..++
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~----~~~~ 320 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF---DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL----EVED 320 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE---ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC----CSSS
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccc---cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC----CCCC
Confidence 9999999999988754 3333 478888999999999 999999999999999999 5443
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCc--ccceeEEEEEecCCcEEEEEecCC
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGH--VKNVSTLTALKISQQTILSSSYDG 350 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg 350 (612)
.... ....+.+| ...|.+++|++ ++++|++++.||
T Consensus 321 ~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg 357 (366)
T 3k26_A 321 PHKA------------------------------------------KCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDA 357 (366)
T ss_dssp GGGC------------------------------------------EEEEECCTTCCSCEEEEEECT-TSSEEEEEETTS
T ss_pred Cccc------------------------------------------cceEEcccccCCceEEEEeCC-CCCeEEEEeCCC
Confidence 2211 01223344 78999999984 288999999999
Q ss_pred cEEEEEcC
Q 007229 351 AIIKWIRG 358 (612)
Q Consensus 351 ~i~~wd~~ 358 (612)
.|++||+.
T Consensus 358 ~i~iwd~~ 365 (366)
T 3k26_A 358 SIWRWDRL 365 (366)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEec
Confidence 99999975
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=296.73 Aligned_cols=282 Identities=19% Similarity=0.292 Sum_probs=237.8
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
-.+.++||++ ++||+|.|++|+|||+.+++..+.+. +|...|++++|+|||++||+|+.||+|+|||+.+++ ....
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 3567999986 58999999999999999999877654 678889999999999999999999999999999998 5567
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEe
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE 176 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd 176 (612)
+.+|...+.++++ ++..|++++.++ .+.+|+.. ....+..+.+|...+..+.++|++. .+++++.|+.+++|+
T Consensus 185 ~~~h~~~v~~~s~--~~~~l~sgs~d~---~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 185 MTSHSARVGSLSW--NSYILSSGSRSG---HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWP 258 (420)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred EeCCCCceEEEee--CCCEEEEEeCCC---ceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEe
Confidence 8899999998877 567999999888 45666655 4567788999999999999999999 599999999999999
Q ss_pred CCCCee----eecccccccceEEEEECCCCC-eEEEE--EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 177 GPPFKF----KLSHREHSNFVNCIRFSPDGS-KLISV--SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 177 ~~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
..+++. +.....|...|.+++|+|++. .++++ +.|++|++||+.+++....+ .+...+.++.|+|+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~----~~~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKE 334 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----ECSSCEEEEEEETTTTE
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----ccccceeeeeecCCCCe
Confidence 887653 344667899999999999765 44443 46999999999999999888 56678999999999999
Q ss_pred EEEEe--CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc
Q 007229 250 VLTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV 327 (612)
Q Consensus 250 l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 327 (612)
+++++ .|+.|++||+ .+++++. .+.+|.
T Consensus 335 lv~~sg~~d~~I~iwd~----~~~~~v~----------------------------------------------~l~gH~ 364 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKY----PTMAKVA----------------------------------------------ELKGHT 364 (420)
T ss_dssp EEEEECTTTCCEEEEET----TTCCEEE----------------------------------------------EECCCS
T ss_pred EEEEEecCCCEEEEEEC----CCCcEEE----------------------------------------------EEcCCC
Confidence 88875 6899999999 6655543 455799
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
..|.+++|++ ++.+|++|+.|++|++||+.......
T Consensus 365 ~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 365 SRVLSLTMSP-DGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp SCEEEEEECT-TSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred CCEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCccc
Confidence 9999999983 27899999999999999987655443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=291.87 Aligned_cols=247 Identities=18% Similarity=0.251 Sum_probs=207.0
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECC--CCCEEEEeeCcCeEEE
Q 007229 11 ACAPSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSP--NGEWIASADVSGSVRI 85 (612)
Q Consensus 11 ~~~~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~--d~~~las~~~d~~i~i 85 (612)
......|.+.|.+++|+|+|++||+++ |+.|+|||+.++. .+..+.+|...|.+++|+| ++++||+|+.|++|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 334456889999999999999999998 8999999998775 4567899999999999986 4899999999999999
Q ss_pred eecCCCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCCc---eeeeeccCCceEEEEEEcCCC
Q 007229 86 WGTHNGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSGT---TVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 86 wd~~~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~ 159 (612)
||+.+++. ....+.+|...|.+++|+|+ +.+|++++.++ .+++|+...+. ....+.+|...|.+++|+|+.
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~---~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG---AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS---CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC---CEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 99998742 34467789999999999998 78999999988 56888877653 245678899999999999983
Q ss_pred -----------------CEEEEEeecCCeEEEEeCCCC---eeeecccccccceEEEEECCCC----CeEEEEEcCCcEE
Q 007229 160 -----------------PFRIATCGEDFLVNFYEGPPF---KFKLSHREHSNFVNCIRFSPDG----SKLISVSSDRKGL 215 (612)
Q Consensus 160 -----------------~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~ 215 (612)
. +|++|+.|++|++||+... +....+.+|...|.+++|+|++ ++|++++.|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred CCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 4 5999999999999998754 4667789999999999999986 7899999999999
Q ss_pred EEecCCCC---e-eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 216 IYDGKSGE---K-IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 216 vwd~~~~~---~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+|++++.. . ...+ ..|...|.+++|+|++++|++++.||.|++|+.
T Consensus 242 iw~~~~~~~~~~~~~~~---~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLL---HKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EEECSSTTCCCCBCCEE---EECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred EEEccCccccchhhhhh---hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 99987632 1 1222 267889999999999999999999999999998
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=324.52 Aligned_cols=519 Identities=13% Similarity=0.033 Sum_probs=356.6
Q ss_pred CCCCceeEEEEccCCCEEEEecC-------CEEEEEeCCCCceeeEeccCCCce-------EEEEECCCCCEEEEeeCc-
Q 007229 16 TERGRGILISGNPKTDTILYCNG-------RSVLIRYLDKPLHVEFYGEHGYPV-------TVARYSPNGEWIASADVS- 80 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~-------~~i~i~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~las~~~d- 80 (612)
.+.+.+.+++|||||++||+++. ..|++||+.+++ .+.+..|...+ ..++|||||+++++++.+
T Consensus 50 ~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 50 SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcC
Confidence 35678999999999999999852 389999999887 45688899888 999999999977887754
Q ss_pred -----CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC---------eeeEEEEEecCCceeeeeccC
Q 007229 81 -----GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG---------KSFVRAFMWDSGTTVGDFDGH 146 (612)
Q Consensus 81 -----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~---------~~~i~i~~~~~~~~~~~~~~~ 146 (612)
..|.+||+.+++. . .+..+ ....++|+| | .+++++.+.. .....+|....+.....+.+|
T Consensus 129 ~~~~~~~l~~~~~~~g~~-~-~l~~~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINF-V-PLNLG--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEE-E-ECCSC--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred CCcccceEEEEECCCCCe-E-EecCC--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 3588888877752 2 23322 234677999 8 7777642110 012467776655666777999
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
...+.++.|+++ .++++++.++.+++|.+.. +.....+..|. .+...+|+|||++|+++ .++.|++||+...+ +
T Consensus 203 ~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l 277 (1045)
T 1k32_A 203 STHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-I 277 (1045)
T ss_dssp SSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-E
T ss_pred CCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-e
Confidence 999999999998 3678888899999997643 33344455554 46677999999999887 58999999985443 3
Q ss_pred eeeeccC--------CccccEEEEEEe-cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-
Q 007229 226 GEFSSED--------GHHGSIYAVSWS-PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ- 295 (612)
Q Consensus 226 ~~~~~~~--------~~~~~v~~i~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (612)
..+.... .|...+.+++|+ |||+++++++ ++.+.+|++ ..++... +.... ...+..+.|+
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~----~~~~~~~-~~~~~----~~~~~~~~~sd 347 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV----SGTYVLK-VPEPL----RIRYVRRGGDT 347 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT----TSSBEEE-CSCCS----CEEEEEECSSS
T ss_pred eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC----CCCceEE-ccCCC----cceEEeeeEcC
Confidence 3442100 134468899999 9999999887 789999998 5555433 22111 1133344444
Q ss_pred CCEEEEEEcCCEEE-EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 296 NDHLITVSLGGIIS-IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 296 ~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
+..++.++.++.+. +|+..... ...+.+|...+..++|++ +++.+++++.++.|++||+.+++.......+...+.
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred CCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 55677777777888 88876533 233447778899999983 288999999999999999999988777756888888
Q ss_pred EEEe--eccEEEEecCC----------CeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc
Q 007229 375 CLAA--VEEVIFTAGFD----------NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442 (612)
Q Consensus 375 ~~~~--~~~~l~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (612)
++++ ++++++.++.+ +.+++||+.++.. ............++++|++..++..........|+...
T Consensus 425 ~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~--~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE--EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 8888 77788877664 3999999987642 12222233345566777776666555555544454322
Q ss_pred ceeeecccceEEEEEEccCCCeE--EEEecC-CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEE--------
Q 007229 443 VMSKIDLGFTVTACAIAPDGSEA--IVGGQN-GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS-------- 511 (612)
Q Consensus 443 ~~~~~~~~~~i~~~~~s~~~~~l--~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-------- 511 (612)
.-........+..+.+++++... +....+ -....|++.+. ......+..|.+.+..++++||++++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~ 581 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM-YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 581 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG-GGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCH-hHceEEcCCCCCChhheEEcCCCeEEEEecccCccc
Confidence 22222233444555555544332 222111 11123444431 1223455667788999999999988875
Q ss_pred -----EcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 512 -----ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 512 -----~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
......+.+||+.+++... +. ..+.+++|||||++|++++.+ .+++||+.+
T Consensus 582 ~~~~~~~~~~~l~~~d~~~~~~~~--l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~ 637 (1045)
T 1k32_A 582 AYYQGAPEKGVLLKYDVKTRKVTE--VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 637 (1045)
T ss_dssp HHHHCCCCCEEEEEEETTTCCEEE--EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred ccccccCCCceEEEEECCCCcEEE--ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence 1235678899998887642 22 668899999999999999877 699999987
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=294.09 Aligned_cols=298 Identities=14% Similarity=0.211 Sum_probs=230.0
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc--cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
....++|++++ +|++|. |++|++||..+++....+ .+|...|++++|+|+|++|++|+.||.|++||+++++.+.
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 35678999864 577665 999999999999887664 4678889999999999999999999999999999999988
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCC
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (612)
.+ .+|...+.+++++ +..+++++.|+.+++||. ...
T Consensus 184 ~~---~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~----~~~----------------------------------- 219 (420)
T 4gga_A 184 NM---TSHSARVGSLSWN--SYILSSGSRSGHIHHHDV----RVA----------------------------------- 219 (420)
T ss_dssp EE---CCCSSCEEEEEEE--TTEEEEEETTSEEEEEET----TSS-----------------------------------
T ss_pred EE---eCCCCceEEEeeC--CCEEEEEeCCCceeEeee----ccc-----------------------------------
Confidence 88 4899999988775 678999999999999998 322
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEe
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 386 (612)
......+.+|...+..+.+.+ ++..+++++.|+.+++|+...++.....
T Consensus 220 ----------~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~-------------------- 268 (420)
T 4gga_A 220 ----------EHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVP-------------------- 268 (420)
T ss_dssp ----------SCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCC--------------------
T ss_pred ----------ceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeecccccccee--------------------
Confidence 122244567888888888873 2789999999999999998765432110
Q ss_pred cCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC-eE
Q 007229 387 GFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS-EA 465 (612)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l 465 (612)
......+...|.+++|+|++. ++
T Consensus 269 --------------------------------------------------------~~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 269 --------------------------------------------------------LQTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp --------------------------------------------------------SEEECCCSSCEEEEEECTTCTTEE
T ss_pred --------------------------------------------------------eeeecccCCceeeeeeCCCcccEE
Confidence 011112445689999999665 44
Q ss_pred EE--EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc--CCCeEEEEecCCcceeeeccccccccee
Q 007229 466 IV--GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD--GNREAIVWDRVSKEVKLNNMLFHTARIN 541 (612)
Q Consensus 466 ~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 541 (612)
++ |+.|+.|++||+.+++. ...+.. ...+.++.|+|+++.+++++ .|+.|+|||+.+++++ ..+.+|.++|+
T Consensus 293 a~~~gs~D~~I~iwd~~t~~~--~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-~~l~gH~~~V~ 368 (420)
T 4gga_A 293 ATGGGTSDRHIRIWNVCSGAC--LSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVL 368 (420)
T ss_dssp EEEECTTTCEEEEEETTTTEE--EEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCEE
T ss_pred EEEeecCCCEEEEEeCCcccc--ceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE-EEEcCCCCCEE
Confidence 44 45799999999999886 444443 45789999999999888765 7899999999999987 56888999999
Q ss_pred EEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeee
Q 007229 542 CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYG 586 (612)
Q Consensus 542 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 586 (612)
+++|+|||++||||+.|++|+|||+.. . .+......+...+..
T Consensus 369 ~l~~spdg~~l~S~s~D~tvriWdv~~-~-~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 369 SLTMSPDGATVASAAADETLRLWRCFE-L-DPARRREREKASAAK 411 (420)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSC-S-SCC------------
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCC-C-CccchhhhccCCccc
Confidence 999999999999999999999999986 3 334444444444433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=280.50 Aligned_cols=277 Identities=18% Similarity=0.266 Sum_probs=232.8
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
.++|+||+++ +||++.|++|+|||++++++++.+. +|...|++++|+|++++||+|+.||+|++||+.+++ ....+
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEEe
Confidence 4679999987 8999999999999999999887664 678889999999999999999999999999999998 55578
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 177 (612)
.+|...+.++. +++..+++++.++ .+.++.... ...+..+.+|...+..+.++++++ .+++++.|+.|++||+
T Consensus 106 ~~h~~~~~~~~--~~~~~l~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 106 TSHSARVGSLS--WNSYILSSGSRSG---HIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPS 179 (318)
T ss_dssp ECCSSCEEEEE--EETTEEEEEETTS---EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEES
T ss_pred cCccceEEEee--cCCCEEEEEecCC---ceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEEC
Confidence 88988887655 4667899998887 345555553 466778899999999999999999 5999999999999999
Q ss_pred CCCeee----ecccccccceEEEEECCCCCeE---EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 178 PPFKFK----LSHREHSNFVNCIRFSPDGSKL---ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 178 ~~~~~~----~~~~~~~~~v~~~~~s~~~~~l---~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.+++.. .....+...|.+++++|++..+ ++++.++.|++||.......... .+...+..+.|+|+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTTTEE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc----cceeeeeeeeecccccce
Confidence 887643 3345678899999999987644 35567899999999998888777 678889999999999988
Q ss_pred EEEe--CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc
Q 007229 251 LTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK 328 (612)
Q Consensus 251 ~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 328 (612)
++++ .|+.|++||+ .+++++. .+.+|..
T Consensus 256 ~~~sg~~d~~i~iwd~----~~~~~~~----------------------------------------------~l~gH~~ 285 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKY----PTMAKVA----------------------------------------------ELKGHTS 285 (318)
T ss_dssp EEEECTTTCCEEEEET----TTCCEEE----------------------------------------------EECCCSS
T ss_pred EEEEEcCCCEEEEEEC----CCCcEEE----------------------------------------------EEcCCCC
Confidence 8765 7899999999 6665543 3456899
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEcCCc
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 360 (612)
.|++++|++ ++.+|++++.||+|++||+...
T Consensus 286 ~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 286 RVLSLTMSP-DGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEECT-TSSCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEEcC-CCCEEEEEecCCeEEEEECCCC
Confidence 999999983 2789999999999999998654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=275.02 Aligned_cols=254 Identities=17% Similarity=0.217 Sum_probs=209.2
Q ss_pred eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc-eeeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeE
Q 007229 53 EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF-VLKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFV 129 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i 129 (612)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+.. .....+.+|.+.|.+++|+|+ +++|++++.|+ .+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~---~v 79 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---KV 79 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT---EE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC---EE
Confidence 4578999999999999999999999999999999997542 255688999999999999874 89999999998 57
Q ss_pred EEEEecCC--ceeeeeccCCceEEEEEEcCC--CCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECCC--
Q 007229 130 RAFMWDSG--TTVGDFDGHSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPD-- 201 (612)
Q Consensus 130 ~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~-- 201 (612)
++|+.+++ ..+..+.+|...|.+++|+|+ +. +|++++.|+.|++||+++... ...+.+|...|.+++|+|+
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 88887766 366778899999999999998 67 699999999999999987632 3457789999999999997
Q ss_pred -----------CCeEEEEEcCCcEEEEecCCCC----eeeeeeccCCccccEEEEEEecCC---CEEEEEeCCCcEEEEE
Q 007229 202 -----------GSKLISVSSDRKGLIYDGKSGE----KIGEFSSEDGHHGSIYAVSWSPDG---KKVLTVSADKSAKVWE 263 (612)
Q Consensus 202 -----------~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~~~dg~i~iw~ 263 (612)
+++|++++.|++|++||+++++ ....+ .+|...|.+++|+|++ ++|++++.|++|++||
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l---~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE---CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe---cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 5799999999999999998876 33344 4899999999999984 8999999999999999
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
+ .......... ......|...+.+++|++ ++++|
T Consensus 236 ~----~~~~~~~~~~-----------------------------------------~~~~~~~~~~v~~~~~s~-~g~~l 269 (297)
T 2pm7_B 236 Q----DNEQGPWKKT-----------------------------------------LLKEEKFPDVLWRASWSL-SGNVL 269 (297)
T ss_dssp E----SSTTSCCEEE-----------------------------------------ESSSSCCSSCEEEEEECS-SSCCE
T ss_pred e----CCCCCcccee-----------------------------------------eeecccCCCcEEEEEECC-CCCEE
Confidence 8 3321000000 000134677899999983 27899
Q ss_pred EEEecCCcEEEEEcCC
Q 007229 344 LSSSYDGAIIKWIRGV 359 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~ 359 (612)
++++.||.|++|+...
T Consensus 270 as~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 270 ALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEETTSCEEEEEECT
T ss_pred EEEcCCCcEEEEEECC
Confidence 9999999999998763
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=296.34 Aligned_cols=199 Identities=17% Similarity=0.287 Sum_probs=167.8
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce----------eeeeeeecC------------CCeEEEEECCCC
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV----------LKNEFKVLS------------GRIDDLQWSPDG 114 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~----------~~~~~~~~~------------~~i~~~~~s~~~ 114 (612)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. +...+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4788999999999999999999999999999998762 456788898 889999999998
Q ss_pred --CEEEEEeCCCCeeeEEEEEecCCcee---------------------------------------ee-eccCCceEEE
Q 007229 115 --LRIVACGDGKGKSFVRAFMWDSGTTV---------------------------------------GD-FDGHSRRVLS 152 (612)
Q Consensus 115 --~~l~~~~~~~~~~~i~i~~~~~~~~~---------------------------------------~~-~~~~~~~v~~ 152 (612)
.+|++++.++ .+++|+.+.+... .. ..+|...|.+
T Consensus 106 ~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 106 NAAQFLLSTNDK---TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp SSSEEEEEECSS---CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CcceEEEeCCCC---eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 7899999888 5778877654332 12 3689999999
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCC-Ceeee-------cccccccceEEEEECCCC-CeEEEEEcCCcEEEEecCCCC
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKL-------SHREHSNFVNCIRFSPDG-SKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~-------~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~ 223 (612)
++|+|+++ +|++| .|+.|++||+.+ ++... .+.+|...|.+++|+|++ ++|++++.||.|++||+++++
T Consensus 183 ~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 183 ISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp EEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred EEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 99999999 58888 799999999994 44433 367899999999999998 999999999999999999988
Q ss_pred e----eeeeeccCCccc------------cEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 224 K----IGEFSSEDGHHG------------SIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 224 ~----~~~~~~~~~~~~------------~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
. ...+ ..|.. .|.+++|+|++++|++++. +.|++||+
T Consensus 261 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~ 313 (447)
T 3dw8_B 261 LCDRHSKLF---EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDL 313 (447)
T ss_dssp SSCTTCEEE---CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEET
T ss_pred cccceeeEe---ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeC
Confidence 6 4555 35554 8999999999999999998 99999998
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=287.11 Aligned_cols=295 Identities=16% Similarity=0.184 Sum_probs=236.8
Q ss_pred cCCceeeeeccCCceEEEEEEcCCC---CEEEEEeecCCeEEEEeCCC-Ceee-ecccccccceEEEEECCCCCeEEEEE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTR---PFRIATCGEDFLVNFYEGPP-FKFK-LSHREHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
...+.+..+.+|.+.|++++|+|++ + +|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++++|++++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 3566788889999999999999994 6 699999999999999987 5444 67889999999999999999999999
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEE--ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW--SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED 287 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (612)
.||.|++||+++++..... .|...|.+++| +|++++|++++.||.|++||+ .+++.+..+...
T Consensus 106 ~dg~v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~~~~~~~~~~------- 170 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT----RSSNPMMVLQLP------- 170 (368)
T ss_dssp TTSEEEEEETTTTEEEEEE----ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS----SCSSCSEEEECS-------
T ss_pred CCCcEEEEEcCCCCceeec----cccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC----CCCcEEEEEecC-------
Confidence 9999999999999888766 79999999999 889999999999999999999 666555444322
Q ss_pred eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 288 MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
..+.++.+. ...+++++.++.+.+|++..........
T Consensus 171 ----------------------------------------~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 207 (368)
T 3mmy_A 171 ----------------------------------------ERCYCADVI---YPMAVVATAERGLIVYQLENQPSEFRRI 207 (368)
T ss_dssp ----------------------------------------SCEEEEEEE---TTEEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred ----------------------------------------CCceEEEec---CCeeEEEeCCCcEEEEEeccccchhhhc
Confidence 133344443 5678888888899999887643221110
Q ss_pred ecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeee
Q 007229 368 KYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKI 447 (612)
Q Consensus 368 ~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (612)
..
T Consensus 208 ------------------------------------------------------------------------------~~ 209 (368)
T 3mmy_A 208 ------------------------------------------------------------------------------ES 209 (368)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccceEEEEEEccCCCe----EEEEecCCeEEEEEccCccc-ccceeeccccC------------ceEEEEEcCCCcEEE
Q 007229 448 DLGFTVTACAIAPDGSE----AIVGGQNGKLHIYSISGNTL-TEEMVLEKHRG------------AITVIQYSPDVSMFA 510 (612)
Q Consensus 448 ~~~~~i~~~~~s~~~~~----l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~------------~i~~~~~s~~~~~l~ 510 (612)
.......++++.++... +++++.||.|++|++..... .....+..|.. +|++++|+|++++|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 289 (368)
T 3mmy_A 210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA 289 (368)
T ss_dssp SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE
T ss_pred cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEE
Confidence 01123455555555544 99999999999999987743 33566677765 799999999999999
Q ss_pred EEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 511 SADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 511 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
+++.||.|++||+.+++.+ ..+.+|..+|++++|+|+|++|++++.|+..+.|++.
T Consensus 290 s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 290 TVGSDGRFSFWDKDARTKL-KTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEETTSCEEEEETTTTEEE-EECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEccCCeEEEEECCCCcEE-EEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 9999999999999999887 5677899999999999999999999998865555543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-37 Score=285.29 Aligned_cols=285 Identities=12% Similarity=0.048 Sum_probs=232.8
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe---eeecccccccceEEEEECCCCC-eEEEEEcCCcEEEE
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK---FKLSHREHSNFVNCIRFSPDGS-KLISVSSDRKGLIY 217 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw 217 (612)
...+|.+.|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|.+++|+|+++ +|++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3468999999999999999 59999999999999998876 3444568999999999999999 99999999999999
Q ss_pred ec-CCCCeeeeeeccCC--ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 218 DG-KSGEKIGEFSSEDG--HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 218 d~-~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
|+ .+++. ..+ .+ |...|.+++|+| ++++++++.|+.|++||+ .+...
T Consensus 85 d~~~~~~~-~~~---~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~----~~~~~--------------------- 134 (342)
T 1yfq_A 85 DLIGSPSF-QAL---TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP----RNYGD--------------------- 134 (342)
T ss_dssp CSSSSSSE-EEC---BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH----HHHTT---------------------
T ss_pred EeccCCce-Eec---cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc----ccccc---------------------
Confidence 99 87766 333 26 999999999999 999999999999999998 21000
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~ 374 (612)
......
T Consensus 135 ---------------------------------------------~~~~~~----------------------------- 140 (342)
T 1yfq_A 135 ---------------------------------------------GVIAVK----------------------------- 140 (342)
T ss_dssp ---------------------------------------------BCEEEE-----------------------------
T ss_pred ---------------------------------------------cccccc-----------------------------
Confidence 000000
Q ss_pred EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEE
Q 007229 375 CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVT 454 (612)
Q Consensus 375 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 454 (612)
.+.+..+.+...+.
T Consensus 141 ------------------------------------------------------------------~~~~~~~~~~~~v~ 154 (342)
T 1yfq_A 141 ------------------------------------------------------------------NLNSNNTKVKNKIF 154 (342)
T ss_dssp ------------------------------------------------------------------ESCSSSSSSCCCEE
T ss_pred ------------------------------------------------------------------CCeeeEEeeCCceE
Confidence 00000111233577
Q ss_pred EEEEccCCCeEEEEecCCeEEEEEccC-cccccceeeccccCceEEEEEcC-CCcEEEEEcCCCeEEEEecCCc------
Q 007229 455 ACAIAPDGSEAIVGGQNGKLHIYSISG-NTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNREAIVWDRVSK------ 526 (612)
Q Consensus 455 ~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~------ 526 (612)
+++|+|++ +++++.|+.|++||+.+ +..........|...|.+++|+| +++++++++.||.|++|++...
T Consensus 155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 88888887 88899999999999987 55433445567888999999999 9999999999999999999887
Q ss_pred ceeeeccccccc---------ceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccc-ccCeeeEEEecCceEE
Q 007229 527 EVKLNNMLFHTA---------RINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVV 596 (612)
Q Consensus 527 ~~~~~~~~~~~~---------~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~l~ 596 (612)
+.. ..+..|.. .|++++|+|++++|++++.||.|++||+.+ + +++..+.+| ...|.+++ .++++|+
T Consensus 233 ~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~-~~~~~~~~~h~~~v~~~~-~~~~~l~ 308 (342)
T 1yfq_A 233 SKR-FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT-R-KKIKNFAKFNEDSVVKIA-CSDNILC 308 (342)
T ss_dssp TTC-EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT-T-EEEEECCCCSSSEEEEEE-ECSSEEE
T ss_pred ccc-eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc-H-hHhhhhhcccCCCceEec-CCCCeEE
Confidence 433 44555654 999999999999999999999999999998 6 778889998 99999999 8888999
Q ss_pred EccCCCe
Q 007229 597 SSGEDAC 603 (612)
Q Consensus 597 s~~~d~~ 603 (612)
+++.||.
T Consensus 309 s~s~Dg~ 315 (342)
T 1yfq_A 309 LATSDDT 315 (342)
T ss_dssp EEEECTH
T ss_pred EEecCCc
Confidence 9999998
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=280.16 Aligned_cols=251 Identities=16% Similarity=0.223 Sum_probs=203.8
Q ss_pred EeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeeeEE
Q 007229 54 FYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 54 ~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~ 130 (612)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++. ....+.+|.+.|.+++|+| ++++|++++.++ .++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~---~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR---KVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS---CEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC---EEE
Confidence 4679999999999999999999999999999999988753 4567889999999999986 489999999998 467
Q ss_pred EEEecCC--ceeeeeccCCceEEEEEEcCC--CCEEEEEeecCCeEEEEeCCCCe---eeecccccccceEEEEECCC--
Q 007229 131 AFMWDSG--TTVGDFDGHSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEGPPFK---FKLSHREHSNFVNCIRFSPD-- 201 (612)
Q Consensus 131 i~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~-- 201 (612)
+|+..++ +.+..+.+|...|.+++|+|+ +. +|++|+.|++|++||+..+. ....+.+|...|.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 7777665 467788899999999999998 66 59999999999999988753 24557789999999999997
Q ss_pred ---------------CCeEEEEEcCCcEEEEecCCCC---eeeeeeccCCccccEEEEEEecCC----CEEEEEeCCCcE
Q 007229 202 ---------------GSKLISVSSDRKGLIYDGKSGE---KIGEFSSEDGHHGSIYAVSWSPDG----KKVLTVSADKSA 259 (612)
Q Consensus 202 ---------------~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~dg~i 259 (612)
+++|++++.|+.|++||++.+. ....+ .+|...|.+++|+|++ ++|++++.||+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l---~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v 240 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL---EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC---BCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec---ccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence 4789999999999999997653 33344 5899999999999986 789999999999
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
++|++ ...... ......+..|...|.+++|++.
T Consensus 241 ~iw~~----~~~~~~------------------------------------------~~~~~~~~~~~~~v~~v~~sp~- 273 (316)
T 3bg1_A 241 FIWTC----DDASSN------------------------------------------TWSPKLLHKFNDVVWHVSWSIT- 273 (316)
T ss_dssp EEEEC----SSTTCC------------------------------------------CCBCCEEEECSSCEEEEEECTT-
T ss_pred EEEEc----cCcccc------------------------------------------chhhhhhhcCCCcEEEEEEcCC-
Confidence 99998 331100 0001223457788999999832
Q ss_pred CcEEEEEecCCcEEEEEcC
Q 007229 340 QQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~ 358 (612)
+.+|++++.|+.|++|+..
T Consensus 274 g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 274 ANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCCEEEEESSSCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEEC
Confidence 7899999999999999975
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=274.15 Aligned_cols=283 Identities=17% Similarity=0.261 Sum_probs=234.6
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCe
Q 007229 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 272 (612)
.++|+||+++ +|++| .|++|+|||+++++.+..+.. .+|...|.+++|+|++++|++|+.||.|++|++ .+++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~-~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~----~~~~ 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQM-EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV----QQQK 100 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEEC-CSTTCCEEEEEECTTSSEEEEEETTSEEEEEET----TTTE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEe-cCCCCeEEEEEECCCCCEEEEEECCCcEEEeec----CCce
Confidence 4679999886 66655 599999999999998887743 378889999999999999999999999999999 8999
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcE
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 352 (612)
.+..+..+. ..+......+..+++++.++.+.+|+..........+.+|...+..+.+... +..+++++.||.|
T Consensus 101 ~~~~~~~h~-----~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i 174 (318)
T 4ggc_A 101 RLRNMTSHS-----ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-GRHLASGGNDNLV 174 (318)
T ss_dssp EEEEEECCS-----SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred eEEEecCcc-----ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC-CCEEEEEecCcce
Confidence 988887654 3455666778999999999999999988888888889999999999988832 7899999999999
Q ss_pred EEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEee
Q 007229 353 IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE 432 (612)
Q Consensus 353 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (612)
++||+.+++......
T Consensus 175 ~iwd~~~~~~~~~~~----------------------------------------------------------------- 189 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPL----------------------------------------------------------------- 189 (318)
T ss_dssp EEEESSCBTTBSCCS-----------------------------------------------------------------
T ss_pred eEEECCCCcccccce-----------------------------------------------------------------
Confidence 999987654322111
Q ss_pred ccEEEeecccceeeecccceEEEEEEccCCCeE---EEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEE
Q 007229 433 SGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA---IVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509 (612)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (612)
.....+...+.+++++|++..+ ++++.++.|++||...... .....+...+..+.|+|+++.+
T Consensus 190 -----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 190 -----------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp -----------EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE---EEEEECSSCEEEEEEETTTTEE
T ss_pred -----------eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc---cccccceeeeeeeeecccccce
Confidence 0111133467888898876644 4567889999999987765 3445577889999999999888
Q ss_pred EEEc--CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 510 ASAD--GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 510 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
++++ .|+.|++||+.+++++ ..+.+|.++|++++|+|||++||+|+.||+|+|||+.+
T Consensus 256 ~~~sg~~d~~i~iwd~~~~~~~-~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEECTTTCCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEEcCCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 7654 7999999999999987 56888999999999999999999999999999999976
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=291.92 Aligned_cols=314 Identities=10% Similarity=0.133 Sum_probs=233.5
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc-----------eeeEeccCC------------CceEEEEECCC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL-----------HVEFYGEHG------------YPVTVARYSPN 70 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~-----------~~~~~~~h~------------~~v~~~~~s~d 70 (612)
..+.+.|++++|+|+|++||+++ ++.|+|||+.+++ ....+.+|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 34678999999999999999998 8999999999877 477788998 88999999999
Q ss_pred C--CEEEEeeCcCeEEEeecCCCcee---------------------------------------eeeeeecCCCeEEEE
Q 007229 71 G--EWIASADVSGSVRIWGTHNGFVL---------------------------------------KNEFKVLSGRIDDLQ 109 (612)
Q Consensus 71 ~--~~las~~~d~~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~i~~~~ 109 (612)
+ .+|++++.|++|++||+.++... .....+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 89999999999999999874421 012357999999999
Q ss_pred ECCCCCEEEEEeCCCCeeeEEEEEec-CCceee-------eeccCCceEEEEEEcCCC-CEEEEEeecCCeEEEEeCCCC
Q 007229 110 WSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVG-------DFDGHSRRVLSCEFKPTR-PFRIATCGEDFLVNFYEGPPF 180 (612)
Q Consensus 110 ~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~-------~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~ 180 (612)
|+|++++|+++ .++ .+++|+.+ .++.+. .+.+|...|.+++|+|++ . ++++|+.||.|++||+.++
T Consensus 185 ~~~~~~~l~s~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 185 INSDYETYLSA-DDL---RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp ECTTSSEEEEE-CSS---EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETTSCEEEEETTTC
T ss_pred EcCCCCEEEEe-CCC---eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCCCeEEEEECcCC
Confidence 99999999998 555 56777776 344444 367899999999999998 6 6999999999999999998
Q ss_pred ee----eeccccccc------------ceEEEEECCCCCeEEEEEcCCcEEEEecCC-CCeeeeeeccCCcccc------
Q 007229 181 KF----KLSHREHSN------------FVNCIRFSPDGSKLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGS------ 237 (612)
Q Consensus 181 ~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~------ 237 (612)
+. ...+.+|.. .|.+++|+|++++|++++. +.|++||+++ ++.+..+. .|...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~ 335 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ---VHEYLRSKLCS 335 (447)
T ss_dssp SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE---SCGGGTTTHHH
T ss_pred ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee---ccccccccccc
Confidence 86 666777776 8999999999999999998 9999999997 77777773 44321
Q ss_pred ---------EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEE
Q 007229 238 ---------IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308 (612)
Q Consensus 238 ---------v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 308 (612)
+..++|+|++++|++++.||.|++||+ .+++.+. +........... ......+..++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~----~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~---- 402 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR----NTKRDIT-LEASRENNKPRT----VLKPRKVCASGK---- 402 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET----TTCCEEE-EECCSTTCCTTC----BCCCCCEECSSC----
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEc----CCCccee-eeeccccccccc----ccCCccccccCC----
Confidence 334999999999999999999999999 7766653 222211000000 000111111100
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
............+...+..++|++. +.+|++++.++ +++|..
T Consensus 403 -----~~~~~~~~~~~~~~~~i~~~~~~p~-~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 403 -----RKKDEISVDSLDFNKKILHTAWHPK-ENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp -----CCTTCEEGGGCCTTSCCCEEEECSS-SSEEEEECSSC-EEEEEC
T ss_pred -----cccccccccccccCCceeEEEECCC-CCEEEEEecce-eeeecc
Confidence 0001111112235668899999942 77888887765 777754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=287.60 Aligned_cols=285 Identities=17% Similarity=0.249 Sum_probs=237.0
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
+...|.++++ |+++|++++ ++.|++||+.+++....+.+|...|++++| ++++|++|+.||.|++||+.+++ ..
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-~~ 206 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE-ML 206 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-EE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-EE
Confidence 4456777766 899999988 899999999999999999999999999999 88899999999999999999998 55
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCcee---eeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTV---GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
..+..|...|.+++|++ ..+++++.++ .+.+|+..+++.. ..+.+|...|.+++| +++ .+++|+.||.|
T Consensus 207 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i 278 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFNN--GMMVTCSKDR---SIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTI 278 (435)
T ss_dssp EEECCCCSCEEEEECCT--TEEEEEETTS---CEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETTSEE
T ss_pred EEEcCCCCcEEEEEEcC--CEEEEeeCCC---cEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCeE
Confidence 67889999999999974 5899999888 5788888776655 678899999999999 555 69999999999
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
++||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++||+++++.+..+ .+|...|.+++| ++++|++
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL---EGHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEC--CSSEEEE
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE---eCCcCcEEEEEe--cCCEEEE
Confidence 999999999999999999999999994 789999999999999999999999888 479999999999 7889999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
++.||.|++||+ ..+..... .........+.+|...|.+
T Consensus 352 g~~dg~i~vwd~----~~~~~~~~-------------------------------------~~~~~~~~~~~~h~~~v~~ 390 (435)
T 1p22_A 352 GAYDGKIKVWDL----VAALDPRA-------------------------------------PAGTLCLRTLVEHSGRVFR 390 (435)
T ss_dssp EETTSCEEEEEH----HHHTSTTS-------------------------------------CTTTTEEEEECCCSSCCCC
T ss_pred EeCCCcEEEEEC----CCCCCccc-------------------------------------cccchheeeccCCCCCeEE
Confidence 999999999998 32220000 0011123456679999999
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
+++ + +..+++++.||.|++||+.+......
T Consensus 391 l~~-~--~~~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 391 LQF-D--EFQIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp EEE-C--SSCEEECCSSSEEEEEC---------
T ss_pred EEe-C--CCEEEEEeCCCEEEEEECCCCCCccc
Confidence 998 3 78899999999999999987665443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=277.73 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=233.9
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc---eeeEeccCCCceEEEEECCCCC-EEEEeeCcCeEEEeec
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL---HVEFYGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGT 88 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~ 88 (612)
+..|.+.|.+++|+|++++|++++ ++.|++||+.+++ ....+.+|...|++++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 346788999999999999999987 8999999999877 3445668999999999999999 9999999999999999
Q ss_pred -CCCceeeeeeee--cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC---------CceeeeeccCCceEEEEEEc
Q 007229 89 -HNGFVLKNEFKV--LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS---------GTTVGDFDGHSRRVLSCEFK 156 (612)
Q Consensus 89 -~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~---------~~~~~~~~~~~~~v~~~~~~ 156 (612)
.+++. ..+.. |...|.+++|+| +++|++++.++ .+++|+..+ ++++..+. |...|.+++|+
T Consensus 87 ~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 87 IGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDG---LIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp SSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTS---EEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEEC
T ss_pred ccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCC---eEEEEcccccccccccccCCeeeEEe-eCCceEEEEec
Confidence 88763 56777 999999999999 99999999988 567777666 77777777 99999999999
Q ss_pred CCCCEEEEEeecCCeEEEEeCCC-Cee--eecccccccceEEEEECC-CCCeEEEEEcCCcEEEEecCCC------Ceee
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPP-FKF--KLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSG------EKIG 226 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------~~~~ 226 (612)
|++ +++++.|+.|++||+.+ +.. ......|...+.+++|+| +++++++++.||.+++|+++.. +...
T Consensus 160 ~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 160 SSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp SSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred CCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 985 89999999999999988 543 333456888999999999 9999999999999999999887 6666
Q ss_pred eeeccCCc---------cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 227 EFSSEDGH---------HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 227 ~~~~~~~~---------~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
.+. .| ...|.+++|+|++++|++++.||.|++||+ .+++.+..+
T Consensus 237 ~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~----~~~~~~~~~-------------------- 289 (342)
T 1yfq_A 237 AFR---CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL----QTRKKIKNF-------------------- 289 (342)
T ss_dssp EEE---CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEEC--------------------
T ss_pred eee---cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC----ccHhHhhhh--------------------
Confidence 653 44 349999999999999999999999999999 666665443
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCc-ccceeEEEEEecCCcEEEEEecCCc-EEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGH-VKNVSTLTALKISQQTILSSSYDGA-IIKWI 356 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~-i~~wd 356 (612)
.+| ...|.+++ +++.++++++.||. .+.+.
T Consensus 290 --------------------------~~~h~~~v~~~~---~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 290 --------------------------AKFNEDSVVKIA---CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --------------------------CCCSSSEEEEEE---ECSSEEEEEEECTHHHHCSS
T ss_pred --------------------------hcccCCCceEec---CCCCeEEEEecCCccccccc
Confidence 345 77788887 33888999999988 54444
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=279.62 Aligned_cols=313 Identities=15% Similarity=0.181 Sum_probs=243.5
Q ss_pred EEeCCCCceeeEeccCCCceEEEEECCC---CCEEEEeeCcCeEEEeecCC-CceeeeeeeecCCCeEEEEECCCCCEEE
Q 007229 43 IRYLDKPLHVEFYGEHGYPVTVARYSPN---GEWIASADVSGSVRIWGTHN-GFVLKNEFKVLSGRIDDLQWSPDGLRIV 118 (612)
Q Consensus 43 i~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 118 (612)
.++....+.+..+.+|.+.|++++|+|+ |++||+|+.||.|+|||+.+ +..+...+.+|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3455666778889999999999999999 69999999999999999998 5545578899999999999999999999
Q ss_pred EEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEE--cCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEE
Q 007229 119 ACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEF--KPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCI 196 (612)
Q Consensus 119 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 196 (612)
+++.++ .+++|+.++++.+. +.+|...|.+++| +|++. ++++++.||.|++||+.+++.+..+..+. .+.++
T Consensus 103 s~~~dg---~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 103 TASCDK---TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp EEETTS---EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred EEcCCC---cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence 999988 57788877777665 6679999999999 88888 59999999999999999999888887664 56676
Q ss_pred EECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE----EEEEeCCCcEEEEEeecCCCCCe
Q 007229 197 RFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK----VLTVSADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 197 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~----l~~~~~dg~i~iw~~~~~~~~~~ 272 (612)
.+. ...+++++.++.+++|++.......... ...+...+..+++.++... +++++.||.+++|++ ....
T Consensus 177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~----~~~~ 249 (368)
T 3mmy_A 177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI----NPPN 249 (368)
T ss_dssp EEE--TTEEEEEEGGGCEEEEECSSSCEEEEEC-CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES----SCSC
T ss_pred Eec--CCeeEEEeCCCcEEEEEeccccchhhhc-cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec----CCCC
Confidence 666 4578889999999999998766544332 1244556667777665554 888889999999998 3321
Q ss_pred eEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcE
Q 007229 273 VIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352 (612)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 352 (612)
.. .....+.+|......
T Consensus 250 ~~-------------------------------------------~~~~~~~~~~~~~~~-------------------- 266 (368)
T 3mmy_A 250 PA-------------------------------------------KDNFTFKCHRSNGTN-------------------- 266 (368)
T ss_dssp HH-------------------------------------------HHSEEEECSEEC-----------------------
T ss_pred cc-------------------------------------------ccceeeeeeeccccc--------------------
Confidence 10 000111111100000
Q ss_pred EEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEee
Q 007229 353 IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE 432 (612)
Q Consensus 353 ~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (612)
T Consensus 267 -------------------------------------------------------------------------------- 266 (368)
T 3mmy_A 267 -------------------------------------------------------------------------------- 266 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE
Q 007229 433 SGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
.....+...|++++|+|++++|++++.||.|++||+.+++. ...+..|..+|++++|+|++++|+++
T Consensus 267 -----------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 267 -----------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK--LKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp ------------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE--EEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred -----------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE--EEEecCCCCCceEEEECCCCCeEEEE
Confidence 00001223589999999999999999999999999998876 67788999999999999999999999
Q ss_pred cCCCeEEEEecC
Q 007229 513 DGNREAIVWDRV 524 (612)
Q Consensus 513 ~~d~~i~iwd~~ 524 (612)
+.|+..+.|++.
T Consensus 334 s~d~~~~~~~~~ 345 (368)
T 3mmy_A 334 SSYDWSKGHEFY 345 (368)
T ss_dssp ECCCSTTCGGGC
T ss_pred eccccccccccc
Confidence 998765555543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=277.30 Aligned_cols=253 Identities=16% Similarity=0.297 Sum_probs=218.7
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCC----ceeeEeccCCCceEEEEECC--CCCEEEEeeCcCeEEEee
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLDKP----LHVEFYGEHGYPVTVARYSP--NGEWIASADVSGSVRIWG 87 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~s~--d~~~las~~~d~~i~iwd 87 (612)
..|.+.|++++|+|++++|++++ ++.|++||+.++ +....+.+|...|++++|+| |+++|++++.||.|++||
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 46889999999999999999998 899999999976 45667789999999999999 699999999999999999
Q ss_pred cCCCc--------eeeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCCceeeeec-------------
Q 007229 88 THNGF--------VLKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSGTTVGDFD------------- 144 (612)
Q Consensus 88 ~~~~~--------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~------------- 144 (612)
+.+++ .....+..|...|.+++|+|+ +++|++++.++ .+++|+..+++.+..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG---ILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC---EEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC---cEEEecCCChHHhccccccccccccccccC
Confidence 98864 245577789999999999999 99999999988 57888877776554443
Q ss_pred cCCceEEEEEEcCC---CCEEEEEeecCCeEEEEeCCCCee--eecccccccceEEEEECCCC----CeEEEEEcCCcEE
Q 007229 145 GHSRRVLSCEFKPT---RPFRIATCGEDFLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDG----SKLISVSSDRKGL 215 (612)
Q Consensus 145 ~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~ 215 (612)
.|...+.+++|+|+ +. ++++++.++.+.+|+...++. ...+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus 165 ~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 68899999999997 66 699999999999998887765 66688999999999999998 8999999999999
Q ss_pred EEecCCC----------------------------------------------CeeeeeeccCCccccEEEEEEecCCCE
Q 007229 216 IYDGKSG----------------------------------------------EKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 216 vwd~~~~----------------------------------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
+||+.++ +.+..+ .+|...|.+++|+|++++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH---DDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEE---CTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE---ecccccEEEEEEcCCCCE
Confidence 9999875 233333 478999999999999999
Q ss_pred EEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 250 VLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 250 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
|++++.||.|++|++ ..++....+.
T Consensus 321 l~s~~~dg~v~iw~~----~~~~~~~~~~ 345 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKA----TYSNEFKCMS 345 (351)
T ss_dssp EEEEETTSCEEEEEE----CTTSCEEEEE
T ss_pred EEEecCCCcEEEEec----CcCcchhhee
Confidence 999999999999999 6665555443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=282.34 Aligned_cols=277 Identities=21% Similarity=0.313 Sum_probs=238.9
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
..+|...|.|+.+ ++++|++|+.||.|++||+.+++ ....+.+|...|.+++| ++++|++++.++ .+++|++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg---~i~vwd~ 200 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQY--DERVIITGSSDS---TVRVWDV 200 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-EEEEECCCSSCEEEEEC--CSSEEEEEETTS---CEEEEES
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-EEEEEcCCCCcEEEEEE--CCCEEEEEcCCC---eEEEEEC
Confidence 3456778988887 89999999999999999999988 55678899999999999 788999999998 5789999
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee---ecccccccceEEEEECCCCCeEEEEEcC
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK---LSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
++++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+++.. ..+.+|...|.+++| +++++++++.|
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCCcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 999999999999999999999854 6999999999999999987765 567889999999999 68899999999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
|.|++||+++++.+..+ .+|...|.+++|+ ++++++++.||.|++||+ .+++.+..
T Consensus 276 g~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~----~~~~~~~~--------------- 331 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTL---NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI----ECGACLRV--------------- 331 (435)
T ss_dssp SEEEEEETTTCCEEEEE---ECCSSCEEEEEEE--TTEEEEEETTSCEEEEET----TTCCEEEE---------------
T ss_pred CeEEEEECCcCcEEEEE---cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEEC----CCCCEEEE---------------
Confidence 99999999999999888 3789999999994 679999999999999999 66555433
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCce---------e
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY---------S 362 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---------~ 362 (612)
+.+|...|.++.+ + +..+++|+.||.|++||+..+. .
T Consensus 332 -------------------------------~~~h~~~v~~~~~-~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 332 -------------------------------LEGHEELVRCIRF-D--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp -------------------------------ECCCSSCEEEEEC-C--SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred -------------------------------EeCCcCcEEEEEe-c--CCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 3457788888888 3 8899999999999999997765 5
Q ss_pred eeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCC
Q 007229 363 SKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGEC 402 (612)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 402 (612)
......|...|.++++++..+++++.||.|++||+.+...
T Consensus 378 ~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 378 LRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------
T ss_pred eeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCC
Confidence 5555669999999999999999999999999999987654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=279.76 Aligned_cols=263 Identities=19% Similarity=0.253 Sum_probs=211.7
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--CCeeeecccccccceEEEEECCC--CCeEEEEEcCC
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFKLSHREHSNFVNCIRFSPD--GSKLISVSSDR 212 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg 212 (612)
|+.+..+.+|...|++++|+|+++ +|++++.||.|++||+. +++....+.+|...|.+++|+|+ +++|++++.||
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 356678899999999999999999 59999999999999998 66777788999999999999987 89999999999
Q ss_pred cEEEEecCCCC--eeeeeeccCCccccEEEEEEecC--CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccccee
Q 007229 213 KGLIYDGKSGE--KIGEFSSEDGHHGSIYAVSWSPD--GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288 (612)
Q Consensus 213 ~i~vwd~~~~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (612)
.|++||+.+++ ....+ ..|...|.+++|+|+ ++++++++.||.|++||+ .......
T Consensus 80 ~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~----~~~~~~~------------- 139 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF----KENGTTS------------- 139 (379)
T ss_dssp CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC----CTTSCCC-------------
T ss_pred EEEEEEcCCCceeEeeee---cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec----CCCCcee-------------
Confidence 99999999987 44444 378999999999999 999999999999999999 4332211
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec------------CCcEEEEEecCCcEEEEE
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI------------SQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~i~~wd 356 (612)
...+.+|...+.+++|++. ++..+++++.||.|++||
T Consensus 140 -------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 140 -------------------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188 (379)
T ss_dssp -------------------------------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred -------------------------------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence 1234467888899988864 578888888899999888
Q ss_pred cCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEE
Q 007229 357 RGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436 (612)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (612)
++.+......
T Consensus 189 ~~~~~~~~~~---------------------------------------------------------------------- 198 (379)
T 3jrp_A 189 YNSDAQTYVL---------------------------------------------------------------------- 198 (379)
T ss_dssp EETTTTEEEE----------------------------------------------------------------------
T ss_pred ecCCCcceee----------------------------------------------------------------------
Confidence 7654321110
Q ss_pred Eeecccceeee-cccceEEEEEEccC---CCeEEEEecCCeEEEEEccCccc---ccceeeccccCceEEEEEcCCCcEE
Q 007229 437 LLDSLKVMSKI-DLGFTVTACAIAPD---GSEAIVGGQNGKLHIYSISGNTL---TEEMVLEKHRGAITVIQYSPDVSMF 509 (612)
Q Consensus 437 ~~~~~~~~~~~-~~~~~i~~~~~s~~---~~~l~~~~~dg~v~i~d~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l 509 (612)
...+ .|...|.+++|+|+ +++|++++.||.|++||+.++.. ........|...|.+++|+|++++|
T Consensus 199 -------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 199 -------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 271 (379)
T ss_dssp -------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred -------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence 0111 14457999999999 89999999999999999988642 1123334588999999999999999
Q ss_pred EEEcCCCeEEEEecCCcce
Q 007229 510 ASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 510 ~~~~~d~~i~iwd~~~~~~ 528 (612)
++++.||.|++|++.....
T Consensus 272 ~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 272 ALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EEEESSSSEEEEEEEETTE
T ss_pred EEecCCCcEEEEeCCCCCc
Confidence 9999999999999986543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=282.07 Aligned_cols=283 Identities=17% Similarity=0.217 Sum_probs=225.8
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECC-CCCeEEEEEcCCcEEEEecCCC--
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSG-- 222 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-- 222 (612)
...++++|+...++++++.||.|++|++.... ....+.+|...|.+++|+| ++++|++++.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34578888876556678999999999986643 3345778999999999999 9999999999999999999988
Q ss_pred -----CeeeeeeccCCccccEEEEEEecCC-CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 223 -----EKIGEFSSEDGHHGSIYAVSWSPDG-KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 223 -----~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
+.+..+ .+|...|.+++|+|++ ++|++++.||.|++||+ .+++.+..+..
T Consensus 117 ~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~----------------- 172 (402)
T 2aq5_A 117 VLPLREPVITL---EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV----GTGAAVLTLGP----------------- 172 (402)
T ss_dssp SSCBCSCSEEE---ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET----TTTEEEEEECT-----------------
T ss_pred ccccCCceEEe---cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC----CCCCccEEEec-----------------
Confidence 445555 4899999999999998 69999999999999998 44433322100
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
.+
T Consensus 173 ---------------------------~~--------------------------------------------------- 174 (402)
T 2aq5_A 173 ---------------------------DV--------------------------------------------------- 174 (402)
T ss_dssp ---------------------------TT---------------------------------------------------
T ss_pred ---------------------------CC---------------------------------------------------
Confidence 00
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
+...|.++
T Consensus 175 ------------------------------------------------------------------------~~~~v~~~ 182 (402)
T 2aq5_A 175 ------------------------------------------------------------------------HPDTIYSV 182 (402)
T ss_dssp ------------------------------------------------------------------------CCSCEEEE
T ss_pred ------------------------------------------------------------------------CCCceEEE
Confidence 12347889
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceee-ccccCc-eEEEEEcCCCcEEEEE---cCCCeEEEEecCCcceee-
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL-EKHRGA-ITVIQYSPDVSMFASA---DGNREAIVWDRVSKEVKL- 530 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~---~~d~~i~iwd~~~~~~~~- 530 (612)
+|+|++++|++++.||.|++||+++++. ...+ ..|.+. +.+++|+|++++|+++ +.|+.|++||+.+.+...
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~ 260 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence 9999999999999999999999998876 4555 677766 8999999999999999 899999999999876522
Q ss_pred ecccccccceeEEEecCCCcEEEE-eecCcEEEEEEccCCCcceeeeecc--cccCeeeEEEe-cCceEEEccCCCeEEE
Q 007229 531 NNMLFHTARINCLAWSPSSTMVAT-GSIDTCVIIYEIGKPASSRITIKNA--HLGGVYGVAFM-DDFNVVSSGEDACIRV 606 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~~-~~~~l~s~~~d~~i~~ 606 (612)
.....|...+.+++|+|++++|++ ++.|+.|++||+.++. ..+..+.. |...|.+++|+ ++.++++ .|+.+++
T Consensus 261 ~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~-~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~ 337 (402)
T 2aq5_A 261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA-PFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARF 337 (402)
T ss_dssp EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST-TCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEE
T ss_pred EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC-cceEeecccccCCcccceEEeccccccee--cceeEEE
Confidence 222347788999999999999875 5579999999999843 33444444 45899999999 6666654 4679999
Q ss_pred EEecc
Q 007229 607 WRLAT 611 (612)
Q Consensus 607 w~~~~ 611 (612)
|++.+
T Consensus 338 ~~l~~ 342 (402)
T 2aq5_A 338 YKLHE 342 (402)
T ss_dssp EEEET
T ss_pred EEcCC
Confidence 99875
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=279.67 Aligned_cols=246 Identities=21% Similarity=0.309 Sum_probs=214.2
Q ss_pred CCCCCceeEEEEccCCCEEEEec-CCEEEEEeCC--CCceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeecC
Q 007229 15 STERGRGILISGNPKTDTILYCN-GRSVLIRYLD--KPLHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~~ 89 (612)
..|.+.|.+++|+|++++||+++ ++.|+|||+. +++.+..+.+|...|++++|+|+ +++|++++.||.|++||+.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 87 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 87 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence 46788999999999999999997 8999999998 56777789999999999999987 9999999999999999999
Q ss_pred CCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCC--ceeeeeccCCceEEEEEEcC-------
Q 007229 90 NGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSG--TTVGDFDGHSRRVLSCEFKP------- 157 (612)
Q Consensus 90 ~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~------- 157 (612)
+++. ....+..|...|.+++|+|+ +++|++++.++ .+.+|+...+ .....+.+|...|.+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC---cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 8862 34466779999999999999 99999999988 5778887765 34556789999999999999
Q ss_pred ------CCCEEEEEeecCCeEEEEeCCCCe----eeecccccccceEEEEECCC---CCeEEEEEcCCcEEEEecCCCCe
Q 007229 158 ------TRPFRIATCGEDFLVNFYEGPPFK----FKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 158 ------~~~~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
++. ++++++.|+.|++||+.++. ....+.+|...|.+++|+|+ +++|++++.||.|++||+.+++.
T Consensus 165 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 165 EHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp -----CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred cccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 577 69999999999999987654 44567889999999999999 89999999999999999998752
Q ss_pred ee--eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 225 IG--EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 225 ~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.. .......|...|.+++|+|++++|++++.||.|++|++
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 21 12112358889999999999999999999999999999
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=278.94 Aligned_cols=240 Identities=15% Similarity=0.089 Sum_probs=203.8
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCc---eeeEecc--------------------------------------
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPL---HVEFYGE-------------------------------------- 57 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~---~~~~~~~-------------------------------------- 57 (612)
..+.+++|+|||++|+++.++.|.+||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 46789999999998888889999999999998 5554443
Q ss_pred ----------------CCCceEEEEECCCCCEE-EEeeCcCeEEEeecC--CCceeeeeee--ecCCCeEEEEECCCCCE
Q 007229 58 ----------------HGYPVTVARYSPNGEWI-ASADVSGSVRIWGTH--NGFVLKNEFK--VLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 58 ----------------h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~--~~~~~~~~~~--~~~~~i~~~~~s~~~~~ 116 (612)
|...|++++|+|++++| |+++.||.|+|||+. +++. ...+. .|...|.+++|+|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSSE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCCE
Confidence 34479999999999996 899999999999999 7764 33454 56789999999999999
Q ss_pred EEEEeCCCCeeeEEEEEecCCcee----eeeccCCceEEEEEEcCC---CCEEEEEeecCCeEEEEeCCCCeeeec-ccc
Q 007229 117 IVACGDGKGKSFVRAFMWDSGTTV----GDFDGHSRRVLSCEFKPT---RPFRIATCGEDFLVNFYEGPPFKFKLS-HRE 188 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~ 188 (612)
|++++.++ .+.+|...+++.. ..+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++.+.. +.+
T Consensus 164 l~~~~~~g---~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 164 VIIADKFG---DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEEEETTS---EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred EEEEeCCC---cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 99999877 3455554455543 378899999999999999 77 599999999999999999988877 668
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC----------------------CccccEEEEEEecC
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED----------------------GHHGSIYAVSWSPD 246 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------------------~~~~~v~~i~~~~~ 246 (612)
|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.... .....+..++|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 99999999999999999999999887774210 23457899999999
Q ss_pred CCEEEEEe-CCCcEEEEEe
Q 007229 247 GKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 247 ~~~l~~~~-~dg~i~iw~~ 264 (612)
++++++++ .++.|++|++
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 99999998 8999999998
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=271.31 Aligned_cols=292 Identities=14% Similarity=0.106 Sum_probs=204.9
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE-EE
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV-LT 252 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~ 252 (612)
+|++.+.+.+.....|...|.+++|+|||++|++|+.++ +++||+++++..... .+ ..+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ----EM-RHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE----EC-SCCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee----ec-CCeEEEEEcCCCCEEEEE
Confidence 456666777777789999999999999999999888665 889999887766554 11 247778888888877 45
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
++.|+.|++||. .+++.+..+. +...|.+
T Consensus 77 ~~~d~~v~iWd~----~~~~~~~~~~-----------------------------------------------~~~~v~~ 105 (355)
T 3vu4_A 77 TGVKEVVHIWDD----VKKQDVSRIK-----------------------------------------------VDAPVKD 105 (355)
T ss_dssp CSSTTEEEEEET----TTTEEEEEEE-----------------------------------------------CSSCEEE
T ss_pred ECCccEEEEEEC----CCCcEEEEEE-----------------------------------------------CCCceEE
Confidence 677899999999 7777665543 3346677
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCc-eeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccC
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVG-YSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG 411 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 411 (612)
+.+++ +.++.+ .++.|++||+.+. +......
T Consensus 106 v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~-------------------------------------------- 137 (355)
T 3vu4_A 106 LFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDI-------------------------------------------- 137 (355)
T ss_dssp EEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCE--------------------------------------------
T ss_pred EEEcC---CEEEEE-EcCEEEEEECCCCceeeEEec--------------------------------------------
Confidence 77663 334433 3678888887765 3222211
Q ss_pred CCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE--EecCCeEEEEEccCccc-----
Q 007229 412 SQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV--GGQNGKLHIYSISGNTL----- 484 (612)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~v~i~d~~~~~~----- 484 (612)
. +...+++++ .++++ |+.+|.|++||+.++..
T Consensus 138 -------------------------------------~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~ 176 (355)
T 3vu4_A 138 -------------------------------------R--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQD 176 (355)
T ss_dssp -------------------------------------E--EEEEEEEET--TEEEEEESSCTTCEEEEECCC--------
T ss_pred -------------------------------------c--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccc
Confidence 0 122345555 55655 57889999999887540
Q ss_pred --------cc-ceeeccccCceEEEEEcCCCcEEEEEcCCCe-EEEEecCCcceeeecccc-cccceeEEEecCCCcEEE
Q 007229 485 --------TE-EMVLEKHRGAITVIQYSPDVSMFASADGNRE-AIVWDRVSKEVKLNNMLF-HTARINCLAWSPSSTMVA 553 (612)
Q Consensus 485 --------~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~ 553 (612)
.+ ...+.+|.++|++++|+|++++||+++.|++ |++||+.+++.+.....+ |...|++++|+||+++|+
T Consensus 177 ~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~ 256 (355)
T 3vu4_A 177 QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLA 256 (355)
T ss_dssp ----------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEE
T ss_pred ccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEE
Confidence 11 4678899999999999999999999999998 999999999987443325 999999999999999999
Q ss_pred EeecCcEEEEEEccCCCcceeeeecc---------------------cccCeeeEEEe-cCceEEEccCCCeEEEEEecc
Q 007229 554 TGSIDTCVIIYEIGKPASSRITIKNA---------------------HLGGVYGVAFM-DDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 554 s~~~d~~i~iwd~~~~~~~~~~~~~~---------------------h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~ 611 (612)
+++.|++|++||++.+.......+.. +......++|+ +++.|++++.||.+++|++..
T Consensus 257 s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 257 VVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 99999999999997633122222111 12234678999 888999999999999999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=273.09 Aligned_cols=303 Identities=17% Similarity=0.199 Sum_probs=222.8
Q ss_pred eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce---eeeeeeecCCCeEEEEECC--CCCEEEEEeCCCC
Q 007229 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV---LKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKG 125 (612)
Q Consensus 51 ~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~ 125 (612)
....+.+|.+.|++++|+|++++||+++.||.|++||+.++.. +...+.+|...|.+++|+| |+++|++++.++
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg- 81 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK- 81 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS-
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC-
Confidence 3456789999999999999999999999999999999997642 5556788999999999999 699999999988
Q ss_pred eeeEEEEEecCC---------ceeeeeccCCceEEEEEEcCC--CCEEEEEeecCCeEEEEeCCCCeeeeccc-------
Q 007229 126 KSFVRAFMWDSG---------TTVGDFDGHSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEGPPFKFKLSHR------- 187 (612)
Q Consensus 126 ~~~i~i~~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------- 187 (612)
.+++|+.+.+ +.+..+.+|...|.+++|+|+ +. ++++++.||.|++||+.+++.+..+.
T Consensus 82 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 82 --TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp --CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred --eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 5788888876 568888999999999999999 88 59999999999999998877655443
Q ss_pred ------ccccceEEEEECCC---CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC----CEEEEEe
Q 007229 188 ------EHSNFVNCIRFSPD---GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG----KKVLTVS 254 (612)
Q Consensus 188 ------~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~l~~~~ 254 (612)
.|...+.+++|+|+ ++++++++.++.+.+|+...++..... ...+|...|.+++|+|++ ++|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAA-KLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEE-ECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeee-ecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 67889999999997 899999999999988887777652222 224899999999999998 8999999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccc-cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNA-VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTL 333 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 333 (612)
.||.|++||+ ..+............. .................+.....+.+|+ .........+.+|...|.++
T Consensus 238 ~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~ 312 (351)
T 3f3f_A 238 KDGRIRIFKI----TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS-NLQVELLSEHDDHNGEVWSV 312 (351)
T ss_dssp TTSCEEEEEE----EECC---------------------------------------CC-SEEEEEEEEECTTSSCEEEE
T ss_pred CCCeEEEEeC----CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc-cccccEEEEEecccccEEEE
Confidence 9999999999 3332222111110000 0000000000011111222223333333 12234456678899999999
Q ss_pred EEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 334 TALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 334 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
+|++. +++|++++.||.|++|++..+....
T Consensus 313 ~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 313 SWNLT-GTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EECSS-SCCEEEEETTSCEEEEEECTTSCEE
T ss_pred EEcCC-CCEEEEecCCCcEEEEecCcCcchh
Confidence 99942 7899999999999999998765443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=279.91 Aligned_cols=288 Identities=18% Similarity=0.200 Sum_probs=234.3
Q ss_pred ceeEEEEccCCCEEEEe-c-CCEEEEEeCCCC----ceeeEeccCCCceEEEEECC-CCCEEEEeeCcCeEEEeecCCCc
Q 007229 20 RGILISGNPKTDTILYC-N-GRSVLIRYLDKP----LHVEFYGEHGYPVTVARYSP-NGEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~-~-~~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~s~-d~~~las~~~d~~i~iwd~~~~~ 92 (612)
....++++|+...+++. + +|.|.||++.+. ..+..+.+|...|++++|+| ++++||+|+.||.|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 44568899988766653 3 799999999754 34556789999999999999 99999999999999999999873
Q ss_pred ------eeeeeeeecCCCeEEEEECCCC-CEEEEEeCCCCeeeEEEEEecCCceeeee--ccCCceEEEEEEcCCCCEEE
Q 007229 93 ------VLKNEFKVLSGRIDDLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDF--DGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 93 ------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l 163 (612)
.....+.+|...|.+++|+|++ .+|++++.++ .+++|+.++++.+..+ .+|...|.+++|+|+++ +|
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 191 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN---VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LI 191 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS---CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS-CE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC---EEEEEECCCCCccEEEecCCCCCceEEEEECCCCC-EE
Confidence 2455788999999999999998 6899999888 5788888899999999 89999999999999999 59
Q ss_pred EEeecCCeEEEEeCCCCeeeecc-cccccc-eEEEEECCCCCeEEEE---EcCCcEEEEecCCCCeeeeeeccCCccccE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSH-REHSNF-VNCIRFSPDGSKLISV---SSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 238 (612)
++++.|+.|++||+++++.+..+ .+|.+. +.+++|+|++++|+++ +.|+.|++||+.+++...... ...+...+
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v 270 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGV 270 (402)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSC
T ss_pred EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccCCCce
Confidence 99999999999999999998888 788776 8999999999999998 689999999999876522221 11577889
Q ss_pred EEEEEecCCCEEEEE-eCCCcEEEEEeecCCCCCee-EeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 239 YAVSWSPDGKKVLTV-SADKSAKVWEILEDGSGGRV-IKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
.+++|+|++++|+++ +.||.|++|++ .+++. +..+..
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~----~~~~~~~~~l~~------------------------------------- 309 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEI----TSEAPFLHYLSM------------------------------------- 309 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEE----CSSTTCEEEEEE-------------------------------------
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEe----cCCCcceEeecc-------------------------------------
Confidence 999999999998755 47999999999 54442 222211
Q ss_pred CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
+ .|...+.+++|++. +.+++ +.++.+++|++.++...
T Consensus 310 ------~-~~~~~v~~~~~sp~-~~~~~--s~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 310 ------F-SSKESQRGMGYMPK-RGLEV--NKCEIARFYKLHERKCE 346 (402)
T ss_dssp ------E-CCSSCCSEEEECCG-GGSCG--GGTEEEEEEEEETTEEE
T ss_pred ------c-ccCCcccceEEecc-cccce--ecceeEEEEEcCCCcEE
Confidence 1 15678899999852 44444 45679999998876543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=266.97 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=190.4
Q ss_pred EEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEE
Q 007229 32 TILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ 109 (612)
Q Consensus 32 ~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 109 (612)
.+++++ ++.|++||+++++.+..+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++. ...+..+. .+.+++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-CccceE
Confidence 455555 7999999999999998888775 48999999999987 6777999999999999874 44454444 999999
Q ss_pred ECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc
Q 007229 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH 189 (612)
Q Consensus 110 ~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 189 (612)
|+|++++|++++.+.. .+.+|+.++++.+..+..+ ..+.+++|+|++++++++++.++.|++||+.+++.+..+..+
T Consensus 81 ~spdg~~l~~~~~~~~--~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASS--TLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp ECTTSSEEEEEETTTT--EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCEEEEEECCCC--EEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 9999999977765433 4777777788888877755 467999999999976689999999999999999988887765
Q ss_pred ccceEEEEECCCCCeE-EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe---CCCcEEEEEee
Q 007229 190 SNFVNCIRFSPDGSKL-ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS---ADKSAKVWEIL 265 (612)
Q Consensus 190 ~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~i~iw~~~ 265 (612)
..+.+++|+|++++| ++++.++.|++||+++++....+ .+...+.+++|+|+++++++++ .++.|++||+
T Consensus 158 -~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~- 231 (391)
T 1l0q_A 158 -RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT- 231 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET-
T ss_pred -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE----ecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC-
Confidence 457999999999988 56677899999999999888777 5667899999999999999888 6899999998
Q ss_pred cCCCCCeeEee
Q 007229 266 EDGSGGRVIKT 276 (612)
Q Consensus 266 ~~~~~~~~~~~ 276 (612)
.+++.+..
T Consensus 232 ---~~~~~~~~ 239 (391)
T 1l0q_A 232 ---GTNKITAR 239 (391)
T ss_dssp ---TTTEEEEE
T ss_pred ---CCCeEEEE
Confidence 55554433
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=267.69 Aligned_cols=357 Identities=14% Similarity=0.057 Sum_probs=264.3
Q ss_pred cCCCceEEEEECCCCCEEEEeeC-cCeEEEeecCCCceeeeeeeecCCCeEEEE---ECCCCCEEEEEeCCCCe-ee---
Q 007229 57 EHGYPVTVARYSPNGEWIASADV-SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ---WSPDGLRIVACGDGKGK-SF--- 128 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~~~~~~~~~-~~--- 128 (612)
.....|..+.+.|....++.... ....+++. ......+..++ |+|+++.++........ ..
T Consensus 25 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (433)
T 3bws_A 25 KNGTEIVKFSIHPYKGTVIRLGEEILPFKVLE-----------MDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRI 93 (433)
T ss_dssp --CEEEEEEEEECCTTCEEEETTEECCEEEEE-----------EETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEE
T ss_pred cCCcEEEEEecccccCceEEcCceecceeeee-----------cccCCccEEEEEeeccCCCcEEEEEEccccCcceeee
Confidence 34556777888886443433321 11122221 12334567777 88887776655432211 01
Q ss_pred -------EEEEEecC--C--ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-----cccccccc
Q 007229 129 -------VRAFMWDS--G--TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-----SHREHSNF 192 (612)
Q Consensus 129 -------i~i~~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-----~~~~~~~~ 192 (612)
+.+|.++. + +.+..+..+. .+.+++|+|++. ++++++.++.|++||+.+++... .+.+|...
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 171 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGF 171 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCE
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCc
Confidence 25677764 4 4555565554 455999999554 78899999999999999998877 45688899
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCC
Q 007229 193 VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGG 271 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~ 271 (612)
|.+++|+|+++++++++.|+.|++||+++++.+..+. .|...+.+++|+|+++++++++ .++.|++||+ .++
T Consensus 172 v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~----~~~ 244 (433)
T 3bws_A 172 VETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD---LTGKWSKILLYDPIRDLVYCSNWISEDISVIDR----KTK 244 (433)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE---CSSSSEEEEEEETTTTEEEEEETTTTEEEEEET----TTT
T ss_pred eeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc---CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC----CCC
Confidence 9999999999999999999999999999999888873 6788999999999999886555 7899999998 443
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA 351 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 351 (612)
+.+..+..
T Consensus 245 ~~~~~~~~------------------------------------------------------------------------ 252 (433)
T 3bws_A 245 LEIRKTDK------------------------------------------------------------------------ 252 (433)
T ss_dssp EEEEECCC------------------------------------------------------------------------
T ss_pred cEEEEecC------------------------------------------------------------------------
Confidence 33221110
Q ss_pred EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe
Q 007229 352 IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST 431 (612)
Q Consensus 352 i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
T Consensus 253 -------------------------------------------------------------------------------- 252 (433)
T 3bws_A 253 -------------------------------------------------------------------------------- 252 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccEEEeecccceeeecccceEEEEEEccCCCeEEEEe--------cCCeEEEEEccCcccccceeeccccCceEEEEEc
Q 007229 432 ESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG--------QNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYS 503 (612)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--------~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s 503 (612)
...+.+++|+|+++++++++ .||.|++||+.+++. .. ...|...+.+++|+
T Consensus 253 ------------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~-~~~~~~~~~~~~~~ 311 (433)
T 3bws_A 253 ------------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL--ID-TIGPPGNKRHIVSG 311 (433)
T ss_dssp ------------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE--EE-EEEEEECEEEEEEC
T ss_pred ------------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE--Ee-eccCCCCcceEEEC
Confidence 01256788899998888887 488999999998875 22 33556689999999
Q ss_pred CCCcE-EEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec---------------CcEEEEEEcc
Q 007229 504 PDVSM-FASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI---------------DTCVIIYEIG 567 (612)
Q Consensus 504 ~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---------------d~~i~iwd~~ 567 (612)
|+++. +++++.|+.|++||+.+++.. ..+. +...+.+++|+|++++|++++. ||.|++||+.
T Consensus 312 ~~g~~l~~~~~~~~~v~v~d~~~~~~~-~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 312 NTENKIYVSDMCCSKIEVYDLKEKKVQ-KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp SSTTEEEEEETTTTEEEEEETTTTEEE-EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CCCCEEEEEecCCCEEEEEECCCCcEE-EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 99975 466789999999999988876 3343 6778999999999999988876 5799999998
Q ss_pred CCCcceeeeecccccCeeeEEEe-cCceEEEcc-CCCeEEEEEecc
Q 007229 568 KPASSRITIKNAHLGGVYGVAFM-DDFNVVSSG-EDACIRVWRLAT 611 (612)
Q Consensus 568 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~-~d~~i~~w~~~~ 611 (612)
+ + +.+..+.. ...+.+++|+ ++++|++++ .|+.|++|+++.
T Consensus 390 ~-~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 390 T-D-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp T-T-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred C-C-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8 5 66666665 4579999999 888888776 599999999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=271.03 Aligned_cols=357 Identities=12% Similarity=0.057 Sum_probs=221.9
Q ss_pred CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce--eeeeeeecCCCeEEEEEC---CCCCEEEEEeCCCCee------
Q 007229 59 GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV--LKNEFKVLSGRIDDLQWS---PDGLRIVACGDGKGKS------ 127 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~~~~~~------ 127 (612)
..++++++|+|||++|+++ .++.|++||+.+++. ....+..+........+. .++..+.....+....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977766 577999999999872 112333332212222221 1122222211111000
Q ss_pred eEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC--CCeeeeccc--ccccceEEEEECCCCC
Q 007229 128 FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFKLSHR--EHSNFVNCIRFSPDGS 203 (612)
Q Consensus 128 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~--~~~~~v~~~~~s~~~~ 203 (612)
.+.-..+.........++|...|.+++|+|++++++++++.||.|++||+. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 000001111122234467888999999999999756999999999999999 888887776 5678999999999999
Q ss_pred eEEEEEcCCcEEEEecCCCCeee-eeeccCCccccEEEEEEecC---CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 204 KLISVSSDRKGLIYDGKSGEKIG-EFSSEDGHHGSIYAVSWSPD---GKKVLTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
+|++++.+|.+++|++.+++... ......+|...|.+++|+|+ +++|++++.|+.|++||+ .+++.+..+
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~----~~~~~~~~~-- 236 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY----PQCFIVDKW-- 236 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE----SCTTCEEEE--
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC----CCCceeeee--
Confidence 99999999999999998887654 11122478899999999999 999999999999999999 544433221
Q ss_pred cCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 280 STSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
+.+|...|.+++|+ ++.+|++++.|+.|++||+.+
T Consensus 237 -------------------------------------------~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 237 -------------------------------------------LFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp -------------------------------------------CCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT
T ss_pred -------------------------------------------ecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC
Confidence 23466666666666 466666666666666666654
Q ss_pred ceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEee
Q 007229 360 GYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD 439 (612)
Q Consensus 360 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (612)
++....
T Consensus 272 ~~~~~~-------------------------------------------------------------------------- 277 (450)
T 2vdu_B 272 GKNLST-------------------------------------------------------------------------- 277 (450)
T ss_dssp CCEEEE--------------------------------------------------------------------------
T ss_pred CcEeee--------------------------------------------------------------------------
Confidence 332111
Q ss_pred cccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc-CCCeE
Q 007229 440 SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD-GNREA 518 (612)
Q Consensus 440 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i 518 (612)
+.....+..+.+... ...... ...........|.+++|+|++++|++++ .|+.|
T Consensus 278 -------~~~~~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 278 -------FDYNSLIKPYLNDQH-----------------LAPPRF-QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp -------EECHHHHGGGCCTTS-----------------BC-----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred -------ecchhhhhhhhhhcc-----------------cccccc-cccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence 000000000000000 000000 0000012345789999999999999998 89999
Q ss_pred EEEec--CCc---ceeeecccccccceeEEEecCCCcEEEEeec------CcEEEEEEccC
Q 007229 519 IVWDR--VSK---EVKLNNMLFHTARINCLAWSPSSTMVATGSI------DTCVIIYEIGK 568 (612)
Q Consensus 519 ~iwd~--~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------d~~i~iwd~~~ 568 (612)
++|++ .++ +.+ ..+..| ..|.+++|+|++.++++++. +..|.+|.+..
T Consensus 333 ~iw~~~~~~~~~l~~~-~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 333 IILEMSEKQKGDLALK-QIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECSSSTTCEEEE-EEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEeccCCCCceeec-cEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999 544 333 445556 88999999996544444443 45589998875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=263.38 Aligned_cols=356 Identities=13% Similarity=0.101 Sum_probs=258.7
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEE---ECCCCCEEEE--------------eeCc
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVAR---YSPNGEWIAS--------------ADVS 80 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~las--------------~~~d 80 (612)
...+..+.++|....++...+..+...- + -......+..++ |+|+++.++. ++.+
T Consensus 27 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~------~--~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (433)
T 3bws_A 27 GTEIVKFSIHPYKGTVIRLGEEILPFKV------L--EMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEE 98 (433)
T ss_dssp CEEEEEEEEECCTTCEEEETTEECCEEE------E--EEETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGG
T ss_pred CcEEEEEecccccCceEEcCceecceee------e--ecccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCC
Confidence 3467788888876666655543221110 0 112334556666 7776665543 2344
Q ss_pred C--eEEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceee-----eeccCCceEEE
Q 007229 81 G--SVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVG-----DFDGHSRRVLS 152 (612)
Q Consensus 81 ~--~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~v~~ 152 (612)
+ .|..||..++.. ....+. ....+.+++|+|+++.+++++.++ .+.+|+.++++... .+.+|...|.+
T Consensus 99 ~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~---~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~ 174 (433)
T 3bws_A 99 LNEKLIALDKEGITHRFISRFK-TGFQPKSVRFIDNTRLAIPLLEDE---GMDVLDINSGQTVRLSPPEKYKKKLGFVET 174 (433)
T ss_dssp GTTCEEECCBTTCSEEEEEEEE-CSSCBCCCEESSSSEEEEEBTTSS---SEEEEETTTCCEEEECCCHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCcceEEEEEc-CCCCceEEEEeCCCeEEEEeCCCC---eEEEEECCCCeEeeecCcccccccCCceeE
Confidence 4 444444443421 233333 344567999999666666655554 46788877888877 55689999999
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeecc
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSE 231 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~ 231 (612)
++|+|++. ++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+++++.+..+
T Consensus 175 ~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--- 250 (433)
T 3bws_A 175 ISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT--- 250 (433)
T ss_dssp EEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---
T ss_pred EEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---
Confidence 99999988 699999999999999999999988888999999999999999886555 7999999999999888877
Q ss_pred CCccccEEEEEEecCCCEEEEEe--------CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVS--------ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS 303 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
.....+.+++|+|+++++++++ .||.|++||+ .+++.+..+
T Consensus 251 -~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~----~~~~~~~~~-------------------------- 299 (433)
T 3bws_A 251 -DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM----DKEKLIDTI-------------------------- 299 (433)
T ss_dssp -CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET----TTTEEEEEE--------------------------
T ss_pred -cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC----CCCcEEeec--------------------------
Confidence 4456699999999999999888 4889999998 666554332
Q ss_pred cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEE
Q 007229 304 LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVI 383 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l 383 (612)
.|...+..++|++....++++++.++.|++||+.+++......
T Consensus 300 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---------------- 342 (433)
T 3bws_A 300 ---------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---------------- 342 (433)
T ss_dssp ---------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE----------------
T ss_pred ---------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec----------------
Confidence 1334566777774333566777899999999988665432211
Q ss_pred EEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC
Q 007229 384 FTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS 463 (612)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 463 (612)
+...+.+++|+|+++
T Consensus 343 -----------------------------------------------------------------~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 343 -----------------------------------------------------------------VFDKPNTIALSPDGK 357 (433)
T ss_dssp -----------------------------------------------------------------CSSSEEEEEECTTSS
T ss_pred -----------------------------------------------------------------CCCCCCeEEEcCCCC
Confidence 223467888999998
Q ss_pred eEEEEec---------------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC-CCeEEEEecCC
Q 007229 464 EAIVGGQ---------------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG-NREAIVWDRVS 525 (612)
Q Consensus 464 ~l~~~~~---------------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~iwd~~~ 525 (612)
++++++. ||.|++||+.+++. ...+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus 358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEEecCCCccccccccccccceEEEEEECCCCcE--EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8888776 57999999998876 344444 457899999999999988765 99999999864
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=271.69 Aligned_cols=243 Identities=20% Similarity=0.238 Sum_probs=212.0
Q ss_pred CCCCceeEEEEccC-CCEEEEec-CCEEEEEeCCC----------CceeeEeccCCCceEEEEECCCCC-EEEEeeCcCe
Q 007229 16 TERGRGILISGNPK-TDTILYCN-GRSVLIRYLDK----------PLHVEFYGEHGYPVTVARYSPNGE-WIASADVSGS 82 (612)
Q Consensus 16 ~~~~~v~~~~~s~d-~~~l~~~~-~~~i~i~~~~~----------~~~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~ 82 (612)
.|.+.|++++|+|+ +++||+++ ++.|++||+.+ .+.+..+.+|...|.+++|+|+++ +|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 46789999999998 67888887 79999999986 577788899999999999999998 9999999999
Q ss_pred EEEeecCCCce------eeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCC---ceeeeeccCCceEEE
Q 007229 83 VRIWGTHNGFV------LKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSG---TTVGDFDGHSRRVLS 152 (612)
Q Consensus 83 i~iwd~~~~~~------~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~v~~ 152 (612)
|++||+.++.. ....+..|...|.+++|+| ++..|++++.++ .+++|+..++ +.+..+..|...|.+
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ---KLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC---eEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 99999987432 1345668999999999999 677888888887 5777777765 677888899999999
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCC-CeeeecccccccceEEEEECCCCC-eEEEEEcCCcEEEEecCCC--------
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKLSHREHSNFVNCIRFSPDGS-KLISVSSDRKGLIYDGKSG-------- 222 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~-------- 222 (612)
++|+|++++++++|+.||.|++||+++ ...+..+..|...|.+++|+|+++ +|++++.|+.|++||+...
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 999999987899999999999999998 566777889999999999999985 6899999999999999872
Q ss_pred ------CeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEe
Q 007229 223 ------EKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEI 264 (612)
Q Consensus 223 ------~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~ 264 (612)
+.+..+ .+|...|.+++|+|+++ ++++++.||.|++|++
T Consensus 363 ~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 363 AEDGPPELLFIH---GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp HHHCCTTEEEEC---CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred cccCCcceEEEc---CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 344444 47889999999999999 8999999999999999
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=259.04 Aligned_cols=306 Identities=15% Similarity=0.133 Sum_probs=235.5
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE-EEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL-ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
+++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+ .+...+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~----~~~~~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----PAGSSPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----ECSSSEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----ECCCCcc
Confidence 579999999999999999999998887765 48999999999987 56668999999999999998888 3444899
Q ss_pred EEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC
Q 007229 240 AVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK 318 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 318 (612)
+++|+|+++++++++ .++.|++||+ .+++.+..+.
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~----~~~~~~~~~~---------------------------------------- 113 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDT----TSNTVAGTVK---------------------------------------- 113 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEET----TTTEEEEEEE----------------------------------------
T ss_pred ceEECCCCCEEEEEECCCCEEEEEEC----CCCeEEEEEe----------------------------------------
Confidence 999999999886555 5699999999 7666654433
Q ss_pred CceeecCcccceeEEEEEecCCcEE-EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEec
Q 007229 319 APLSFSGHVKNVSTLTALKISQQTI-LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPL 397 (612)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~ 397 (612)
+...+.+++|++. ++.+ ++++.++.|++||+.+++......
T Consensus 114 -------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~------------------------------ 155 (391)
T 1l0q_A 114 -------TGKSPLGLALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTVS------------------------------ 155 (391)
T ss_dssp -------CSSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEE------------------------------
T ss_pred -------CCCCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEe------------------------------
Confidence 2234677778743 4544 788889999999988765433221
Q ss_pred CCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE-EEEecCCeEEE
Q 007229 398 CEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA-IVGGQNGKLHI 476 (612)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~v~i 476 (612)
....+.+++|+|+++++ ++++.++.|++
T Consensus 156 ---------------------------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~v~~ 184 (391)
T 1l0q_A 156 ---------------------------------------------------VGRSPKGIAVTPDGTKVYVANFDSMSISV 184 (391)
T ss_dssp ---------------------------------------------------CCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ---------------------------------------------------cCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 11246789999999988 56778899999
Q ss_pred EEccCcccccceeeccccCceEEEEEcCCCcEEEEEc---CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE-
Q 007229 477 YSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD---GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV- 552 (612)
Q Consensus 477 ~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l- 552 (612)
||+.+++. ...+ .+...+.+++|+|++++|++++ .++.|++||+.+++.+ ..+..|. .+.+++|+|++++|
T Consensus 185 ~d~~~~~~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~-~~~~~~~s~dg~~l~ 259 (391)
T 1l0q_A 185 IDTVTNSV--IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVGP-DPAGIAVTPDGKKVY 259 (391)
T ss_dssp EETTTTEE--EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECCS-SEEEEEECTTSSEEE
T ss_pred EECCCCeE--EEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-EEEecCC-CccEEEEccCCCEEE
Confidence 99998876 3333 3556789999999999999888 6899999999998876 3444444 57899999999977
Q ss_pred EEeecCcEEEEEEccCCCcceeeeecccccCee---------------eEEEe-cC----------ceEEEccCCCeEEE
Q 007229 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVY---------------GVAFM-DD----------FNVVSSGEDACIRV 606 (612)
Q Consensus 553 ~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~---------------~~~~~-~~----------~~l~s~~~d~~i~~ 606 (612)
++++.|+.|++||+.+ + +.+..+..|..+.. ...|+ +. -.+...+.|..+++
T Consensus 260 ~s~~~d~~v~v~d~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (391)
T 1l0q_A 260 VALSFXNTVSVIDTAT-N-TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK 337 (391)
T ss_dssp EEETTTTEEEEEETTT-T-EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE
T ss_pred EEcCCCCEEEEEECCC-C-cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEE
Confidence 6778899999999998 5 66666665544321 12233 21 24666778999999
Q ss_pred EEecc
Q 007229 607 WRLAT 611 (612)
Q Consensus 607 w~~~~ 611 (612)
|++..
T Consensus 338 W~~~~ 342 (391)
T 1l0q_A 338 WDFGD 342 (391)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 99864
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=246.32 Aligned_cols=298 Identities=12% Similarity=0.018 Sum_probs=202.1
Q ss_pred ceeEEEEccCCC---EEEEecCCEEEEEeCCCC---ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 20 RGILISGNPKTD---TILYCNGRSVLIRYLDKP---LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 20 ~v~~~~~s~d~~---~l~~~~~~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
.++++-|-.-|- -|++++...|.+|+..++ +.++.+.+|+.+|..++++||..-|+...- +
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~-- 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------G-- 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------C--
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-----------c--
Confidence 345555544444 677788999999999999 888999999999999999998643332211 0
Q ss_pred eeeeeeecCCCeEEEEECCC----CCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee--
Q 007229 94 LKNEFKVLSGRIDDLQWSPD----GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-- 167 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-- 167 (612)
.-+...|..++|+|| ++++++++.+ +.+|.+.+++ ++.+++
T Consensus 108 -----~~~~~~v~sla~spd~~~~~~~l~s~g~~-----~~v~~l~~g~-----------------------lv~ss~~g 154 (356)
T 2w18_A 108 -----NLEIREIRALFCSSDDESEKQVLLKSGNI-----KAVLGLTKRR-----------------------LVSSSGTL 154 (356)
T ss_dssp -----SSSEEEEEEECC------CCEEEEEEEEE-----EEEEEETTTE-----------------------EEEEESSS
T ss_pred -----cccccceEEEEECCCccccccEEEeCCCe-----EEEEecCCCc-----------------------EEEecccC
Confidence 113347899999999 9999997743 3455433333 333322
Q ss_pred cCCeEEEEeC-CCCeeeecccccccceEEEEECC---CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 168 EDFLVNFYEG-PPFKFKLSHREHSNFVNCIRFSP---DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 168 ~d~~i~~wd~-~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
.|+.|++|++ +.++.+..+.+|...+..++|+| ++.+|++++.|++|+|||+++|+.+..+.....+...+.+++|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 4666777776 33666667778999999999999 7799999999999999999999999998421123456788899
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceee
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 323 (612)
+|+|+++++++.+.. +|+
T Consensus 235 SpdG~~lvs~s~~~~--~w~------------------------------------------------------------ 252 (356)
T 2w18_A 235 SEMGLLFIVLSHPCA--KES------------------------------------------------------------ 252 (356)
T ss_dssp EETTEEEEEEC---------------------------------------------------------------------
T ss_pred CCCCCEEEEeccCCC--cce------------------------------------------------------------
Confidence 999999888775432 243
Q ss_pred cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
+++|+.|++|++||..+++...... +.++.+.
T Consensus 253 -------------------laSGs~D~tIklWd~~tgk~l~v~~---------------------------~~~p~Gh-- 284 (356)
T 2w18_A 253 -------------------ESLRSPVFQLIVINPKTTLSVGVML---------------------------YCLPPGQ-- 284 (356)
T ss_dssp ------------------------CCEEEEEEETTTTEEEEEEE---------------------------ECCCTTC--
T ss_pred -------------------eeccCCCcEEEEEECCCCEEEEEEE---------------------------eeccCCC--
Confidence 3466677778888777665432210 0000000
Q ss_pred ccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc
Q 007229 404 DAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT 483 (612)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 483 (612)
...+.+..+ ++.++|+|+.|++|+|||+.+++
T Consensus 285 ----------------------------------------------~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 285 ----------------------------------------------AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp ----------------------------------------------CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCS
T ss_pred ----------------------------------------------cceeEcccc--CCCEEEEEcCCCcEEEEECCCCc
Confidence 001222223 37889999999999999999998
Q ss_pred cccceeeccccCceE-EEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 484 LTEEMVLEKHRGAIT-VIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 484 ~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
. ..++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 317 ~--l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 C--TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred E--EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 7 677888887655 6899999999999999999999995
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=255.39 Aligned_cols=285 Identities=16% Similarity=0.187 Sum_probs=212.3
Q ss_pred CCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCce
Q 007229 15 STERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 15 ~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~ 93 (612)
..|.+.|.+++|||||++||+++++.++|||+++++...... ...+..+++++++++++ +++.|++|+|||..+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 357889999999999999999998889999999876655433 23588999999998885 677889999999999984
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeeeccCCceEEEEEEcCCCCEEEEE-eecCCe
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDFDGHSRRVLSCEFKPTRPFRIAT-CGEDFL 171 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~ 171 (612)
+. .+. +...|.+++|+++. ++++.++ .+++|+..++ +.+..+.. +...+++++ .+++++ |+.||.
T Consensus 94 ~~-~~~-~~~~v~~v~~~~~~--~~~~~~~----~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~ 160 (355)
T 3vu4_A 94 VS-RIK-VDAPVKDLFLSREF--IVVSYGD----VISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQ 160 (355)
T ss_dssp EE-EEE-CSSCEEEEEECSSE--EEEEETT----EEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTC
T ss_pred EE-EEE-CCCceEEEEEcCCE--EEEEEcC----EEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcE
Confidence 43 444 67799999999874 4445443 4677877777 77766665 555667777 433443 789999
Q ss_pred EEEEeCCCCe----------------eeecccccccceEEEEECCCCCeEEEEEcCCc-EEEEecCCCCeeeeeeccCC-
Q 007229 172 VNFYEGPPFK----------------FKLSHREHSNFVNCIRFSPDGSKLISVSSDRK-GLIYDGKSGEKIGEFSSEDG- 233 (612)
Q Consensus 172 i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~- 233 (612)
|++||+.+++ .+..+.+|..+|.+++|+|++++|++++.|++ |++||+++++.+..+. .+
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~--~g~ 238 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR--RGL 238 (355)
T ss_dssp EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE--CTT
T ss_pred EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--cCC
Confidence 9999999865 26678899999999999999999999999998 9999999999998882 13
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeE----------------eeeeccCccccceeeeeeeccCC
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVI----------------KTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|...|.+++|+|++++|++++.|+.|++||+.......... ..+.............+...+++
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~ 318 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS 318 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE
T ss_pred CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC
Confidence 89999999999999999999999999999994321111000 00001100000112222233366
Q ss_pred EEEEEEcCCEEEEEEcCCC
Q 007229 298 HLITVSLGGIISIFSASNL 316 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~ 316 (612)
.+++++.+|.+.+|++...
T Consensus 319 ~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 319 LVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EEEEETTTTEEEEEEEEEE
T ss_pred EEEEEeCCCeEEEEEEEcC
Confidence 8999999999999986543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=267.53 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=182.5
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee-----ecccccccceEEEEECC--------CCCeEEEEEcCC
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK-----LSHREHSNFVNCIRFSP--------DGSKLISVSSDR 212 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg 212 (612)
|...+....+++++. ++++++.|++|++||..+++.. ..+.+|.+.|.+++|+| |+++|++++.|+
T Consensus 88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 444445555666665 6999999999999999887643 45789999999999998 889999999999
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
+|+|||+.++.....+ ..|..++.+++|+|++. +|++++.||+|++||+ .+++............. .....
T Consensus 167 tv~~Wd~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~----~t~~~~~~~~~~~~~~~-~~~~s 238 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAG---YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDW----TLNLSAEENSQTELVKN-PWLLT 238 (393)
T ss_dssp EEEEEEEETTEEEEEE---EECSSCEEEEEEETTEEEEEEEEETTSEEEEEET----TCCC----------CSC-CCSEE
T ss_pred eEEEEECCCCceeeee---cCCCCCcEEEEECCCCCceEEecCCCCEEEEEEC----CCCcccccccccCCccc-ceEEe
Confidence 9999999888776666 27889999999999874 7999999999999999 66655443332211000 00000
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
. + ...........+|...+.++.|...++..+++++.|+.+++||+..++.......+..
T Consensus 239 ~-------------------~-~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~ 298 (393)
T 4gq1_A 239 L-------------------N-TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM 298 (393)
T ss_dssp E-------------------E-SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------
T ss_pred c-------------------c-cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC
Confidence 0 0 0001111234578889999999966699999999999999999987765544333333
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
.+..+.+..+. +......
T Consensus 299 ~~~~~~~~~~~--------------------------------------------------------------~~~~~~~ 316 (393)
T 4gq1_A 299 KLGPKNLLPNV--------------------------------------------------------------QGISLFP 316 (393)
T ss_dssp -----CCSCSE--------------------------------------------------------------EEECSSC
T ss_pred ccccEEEcccc--------------------------------------------------------------ccccccC
Confidence 33222221100 0000001
Q ss_pred eEEEEEEcc--CCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecC
Q 007229 452 TVTACAIAP--DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 452 ~i~~~~~s~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
......++| ++.++++|+.||.|++||+.+++. ...+..|..+|++++|+|||++||+++.+| +.+|.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 112223333 455677888999999999998876 566778899999999999999999998765 6666654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=266.13 Aligned_cols=266 Identities=19% Similarity=0.265 Sum_probs=213.0
Q ss_pred eEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCC----------CceeeeeeeecCCCeEEEEECCCCC-EEEEE
Q 007229 53 EFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHN----------GFVLKNEFKVLSGRIDDLQWSPDGL-RIVAC 120 (612)
Q Consensus 53 ~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~ 120 (612)
....+|.+.|++++|+|+ +++||+++.||.|++||+.+ .. ....+.+|...|.+++|+|+++ +|+++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCC-CSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCC-CcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 345679999999999997 78999999999999999986 33 4557889999999999999998 89999
Q ss_pred eCCCCeeeEEEEEecCCce-------eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC---eeeecccccc
Q 007229 121 GDGKGKSFVRAFMWDSGTT-------VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF---KFKLSHREHS 190 (612)
Q Consensus 121 ~~~~~~~~i~i~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~ 190 (612)
+.++ .+.+|+.+.+.. ...+.+|...|.+++|+|++..++++++.|+.|++||++++ +....+..|.
T Consensus 201 ~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 201 SDDH---TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp CTTS---CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred eCCC---eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 8887 467777775322 45677999999999999955557999999999999999987 4666677899
Q ss_pred cceEEEEECCCCC-eEEEEEcCCcEEEEecCC-CCeeeeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecC
Q 007229 191 NFVNCIRFSPDGS-KLISVSSDRKGLIYDGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILED 267 (612)
Q Consensus 191 ~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~ 267 (612)
..|.+++|+|+++ ++++++.||.|++||+++ ++.+..+ ..|...|.+++|+|+++ +|++++.||.|++||+.
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~-- 352 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS-- 352 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG--
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC--
Confidence 9999999999987 688999999999999998 4556666 37899999999999985 68999999999999993
Q ss_pred CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEe
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSS 347 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 347 (612)
............ ...........+|...|.+++|++....++++++
T Consensus 353 --~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 353 --KIGEEQSTEDAE--------------------------------DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp --GTTCCCCHHHHH--------------------------------HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred --CCccccCccccc--------------------------------cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 311110000000 0111233455678999999999954344999999
Q ss_pred cCCcEEEEEcCCce
Q 007229 348 YDGAIIKWIRGVGY 361 (612)
Q Consensus 348 ~dg~i~~wd~~~~~ 361 (612)
.||.|++|++....
T Consensus 399 ~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 399 EDNIMQVWQMAENV 412 (430)
T ss_dssp TTSEEEEEEECHHH
T ss_pred CCCCEEEeEccccc
Confidence 99999999987543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=239.21 Aligned_cols=276 Identities=14% Similarity=0.069 Sum_probs=203.0
Q ss_pred EEEEeecCCeEEEEeCCCC---eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccE
Q 007229 162 RIATCGEDFLVNFYEGPPF---KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 238 (612)
.+++++ ...|++|+...+ +.++++.+|+.+|..+.+.||..-|+...-. +-+...|
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------~~~~~~v 114 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG--------------------NLEIREI 114 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC--------------------SSSEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec--------------------cccccce
Confidence 355555 458999999888 8999999999999999999987666554321 1355678
Q ss_pred EEEEEecC----CCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcC
Q 007229 239 YAVSWSPD----GKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 239 ~~i~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 314 (612)
.+++|+|| ++++++++.+ +++|++ .+++.+.... .+.++.|++|++.
T Consensus 115 ~sla~spd~~~~~~~l~s~g~~--~~v~~l----~~g~lv~ss~-----------------------~g~d~~V~~~~~s 165 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLKSGNI--KAVLGL----TKRRLVSSSG-----------------------TLSDQQVEVMTFA 165 (356)
T ss_dssp EEECC------CCEEEEEEEEE--EEEEEE----TTTEEEEEES-----------------------SSTTCEEEEEEEC
T ss_pred EEEEECCCccccccEEEeCCCe--EEEEec----CCCcEEEecc-----------------------cCCCCcEEEEEEC
Confidence 99999999 9999998754 888988 5554443211 0148899999997
Q ss_pred CCCCCceeecCcccceeEEEEE--ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeE
Q 007229 315 NLDKAPLSFSGHVKNVSTLTAL--KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV 392 (612)
Q Consensus 315 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i 392 (612)
...+....+.+|...+..++|+ +.++..|++++.|++|++||+.+++.......+...+
T Consensus 166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v------------------- 226 (356)
T 2w18_A 166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ------------------- 226 (356)
T ss_dssp TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----------------------
T ss_pred CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce-------------------
Confidence 7777778888999999998888 4567999999999999999999988766543211110
Q ss_pred EEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE-------
Q 007229 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA------- 465 (612)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l------- 465 (612)
..+.+++|+|+|+++
T Consensus 227 ----------------------------------------------------------~~v~~vafSpdG~~lvs~s~~~ 248 (356)
T 2w18_A 227 ----------------------------------------------------------ASVCHKAYSEMGLLFIVLSHPC 248 (356)
T ss_dssp ----------------------------------------------------------CCCEEEEEEETTEEEEEEC---
T ss_pred ----------------------------------------------------------eeeEEEEECCCCCEEEEeccCC
Confidence 124455666666554
Q ss_pred -----EEEecCCeEEEEEccCccccccee---eccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccc
Q 007229 466 -----IVGGQNGKLHIYSISGNTLTEEMV---LEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHT 537 (612)
Q Consensus 466 -----~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 537 (612)
++|+.|++|++||..+++...... ..+|...+.+..+ ++.++|+++.|++|+|||+.+++.+ ..+.+|.
T Consensus 249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l-~tL~gH~ 325 (356)
T 2w18_A 249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCT-ALLPPVS 325 (356)
T ss_dssp ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEE-EEECCC-
T ss_pred CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEE-EEecCCC
Confidence 678899999999999887632221 1466666554444 4789999999999999999999987 5677787
Q ss_pred ccee-EEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 538 ARIN-CLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 538 ~~i~-~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
..+. +++|+|||++|++|+.|++|+|||+.
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 7655 58999999999999999999999963
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=289.47 Aligned_cols=247 Identities=21% Similarity=0.307 Sum_probs=214.0
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCC--CCceeeEeccCCCceEEEEECCC--CCEEEEeeCcCeEEEeec
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLD--KPLHVEFYGEHGYPVTVARYSPN--GEWIASADVSGSVRIWGT 88 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~s~d--~~~las~~~d~~i~iwd~ 88 (612)
...|.+.|++++|+|+|++|++++ +|.|+|||+. +++....+.+|.+.|++++|+|+ +++|++|+.||.|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 457889999999999999999997 8999999998 55677789999999999999998 999999999999999999
Q ss_pred CCCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecCC--ceeeeeccCCceEEEEEEcC------
Q 007229 89 HNGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDSG--TTVGDFDGHSRRVLSCEFKP------ 157 (612)
Q Consensus 89 ~~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~------ 157 (612)
.+++. ....+..|...|.+++|+|+ ++.+++++.++ .+++|+...+ .....+.+|...|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC---cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 98752 34467789999999999999 99999999988 5778877765 34556789999999999999
Q ss_pred -------CCCEEEEEeecCCeEEEEeCCCC----eeeecccccccceEEEEECCC---CCeEEEEEcCCcEEEEecCCCC
Q 007229 158 -------TRPFRIATCGEDFLVNFYEGPPF----KFKLSHREHSNFVNCIRFSPD---GSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 158 -------~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
++. .+++|+.||.|++||+.++ .....+.+|..+|.+++|+|+ +++|++++.||.|++||+.+++
T Consensus 162 ~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 162 GEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -----CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred cccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 466 5999999999999998876 556678899999999999999 8999999999999999998874
Q ss_pred eee--eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 224 KIG--EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 224 ~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
... .......|...|.+++|+|+++++++++.||.|++|++
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 221 11112368889999999999999999999999999999
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=287.17 Aligned_cols=260 Identities=18% Similarity=0.215 Sum_probs=213.1
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeeeecCCCeEEEEECCC--CCEEEEEeCCCCeee
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPD--GLRIVACGDGKGKSF 128 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~~~~~ 128 (612)
+..+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++.. ....+.+|.+.|.+++|+|+ +++|++++.++ .
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg---~ 78 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---K 78 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS---C
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC---e
Confidence 345789999999999999999999999999999999984322 55678899999999999998 99999999998 5
Q ss_pred EEEEEecCCc--eeeeeccCCceEEEEEEcCC--CCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECC--
Q 007229 129 VRAFMWDSGT--TVGDFDGHSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSP-- 200 (612)
Q Consensus 129 i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~-- 200 (612)
+++|+.++++ .+..+.+|...|.+++|+|+ +. .+++|+.||.|++||+.++. ....+.+|...|.+++|+|
T Consensus 79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 7888888876 78888999999999999999 88 69999999999999998873 3344678999999999999
Q ss_pred -----------CCCeEEEEEcCCcEEEEecCCCCeeee-eeccCCccccEEEEEEecC---CCEEEEEeCCCcEEEEEee
Q 007229 201 -----------DGSKLISVSSDRKGLIYDGKSGEKIGE-FSSEDGHHGSIYAVSWSPD---GKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 201 -----------~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~iw~~~ 265 (612)
+++++++++.||.|++||++++..... .....+|..+|.+++|+|+ ++++++++.||.|++||+
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~- 236 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ- 236 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE-
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC-
Confidence 589999999999999999988743221 1122489999999999999 899999999999999999
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
..+.... .........|...+.+++|++ ++.++++
T Consensus 237 ---~~~~~~~-----------------------------------------~~~~~~~~~~~~~v~~l~~sp-dg~~l~s 271 (753)
T 3jro_A 237 ---DNEQGPW-----------------------------------------KKTLLKEEKFPDVLWRASWSL-SGNVLAL 271 (753)
T ss_dssp ---SSSSSCC-----------------------------------------BCCBSSSSCCSSCCCCEEECT-TTCCEEE
T ss_pred ---CCCCCcc-----------------------------------------eeEEeccCCCCCceEEEEEcC-CCCEEEE
Confidence 4432110 011123345888899999984 2789999
Q ss_pred EecCCcEEEEEcCCce
Q 007229 346 SSYDGAIIKWIRGVGY 361 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~ 361 (612)
++.||.|++|++....
T Consensus 272 ~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 272 SGGDNKVTLWKENLEG 287 (753)
T ss_dssp ECSSSCEECCBCCSSS
T ss_pred EcCCCEEEEEecCCCC
Confidence 9999999999998644
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=256.76 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=192.8
Q ss_pred eEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecC---------CC
Q 007229 22 ILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTH---------NG 91 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~---------~~ 91 (612)
...++.+|+++|++++ |+.|++||+++++.+..+. ...|.++.|+|+ +++++.|++|++|+.. ++
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 3345567899999998 8999999999999888776 567889999999 9999999999999765 44
Q ss_pred ceeeeeeeecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeec
Q 007229 92 FVLKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
+.+......|...|.+++|+| +++++++++.++ .+++|+.++++.+.... .|...+.+++|+|++. ++++|+.
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~ 190 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG---TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSP 190 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTC---CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECT
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcC
Confidence 423333346778999999999 999999999988 57888888888877664 4556899999999999 6999999
Q ss_pred CCeEEEEeCCCCeee-ecccc-cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE--EEEEe
Q 007229 169 DFLVNFYEGPPFKFK-LSHRE-HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY--AVSWS 244 (612)
Q Consensus 169 d~~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~--~i~~~ 244 (612)
||.|++||+++++.. ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++++....+.....|...+. +++|+
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence 999999999999887 67887 999999999999999999999 55999999999887766532222334443 69999
Q ss_pred cCCCEEEEEeC-CCcEEEEEe
Q 007229 245 PDGKKVLTVSA-DKSAKVWEI 264 (612)
Q Consensus 245 ~~~~~l~~~~~-dg~i~iw~~ 264 (612)
|++++|++++. |+.+++|++
T Consensus 270 ~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 270 DSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEEE
Confidence 99999999998 999999998
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=255.91 Aligned_cols=245 Identities=9% Similarity=0.039 Sum_probs=188.6
Q ss_pred EECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEee
Q 007229 197 RFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 197 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 276 (612)
.+.+++++|++|+.||.|++||+++++.+..+. ...|.++.|+|+ +++++.|+++++|+. ..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~----~~------ 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYP----GN------ 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEET----TT------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEc----cC------
Confidence 445678899999999999999999999988883 466778888887 999999999999997 22
Q ss_pred eeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe-cCCcEEEEEecCCcEEEE
Q 007229 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK-ISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~w 355 (612)
.+.+|+............+|...|.++++++ .+++++++++.||.|++|
T Consensus 105 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w 154 (343)
T 3lrv_A 105 ------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154 (343)
T ss_dssp ------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE
T ss_pred ------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence 3344554433322233346778899999884 348899999999999999
Q ss_pred EcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccE
Q 007229 356 IRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGV 435 (612)
Q Consensus 356 d~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (612)
|+++++......
T Consensus 155 d~~~~~~~~~~~-------------------------------------------------------------------- 166 (343)
T 3lrv_A 155 SYEDDSQYIVHS-------------------------------------------------------------------- 166 (343)
T ss_dssp ESSSSCEEEEEC--------------------------------------------------------------------
T ss_pred ECCCCcEEEEEe--------------------------------------------------------------------
Confidence 998765532211
Q ss_pred EEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc-ccCceEEEEEcCCCcEEEEEcC
Q 007229 436 ILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK-HRGAITVIQYSPDVSMFASADG 514 (612)
Q Consensus 436 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~ 514 (612)
..+...+++++|+|++++|++|+.||.|++||+++++.. ...+.. |.++|++++|+|++.+|++++.
T Consensus 167 -----------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~~ 234 (343)
T 3lrv_A 167 -----------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVECD 234 (343)
T ss_dssp -----------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred -----------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 012235889999999999999999999999999988752 145666 9999999999999999999995
Q ss_pred CCeEEEEecCCcceeee--ccccccccee--EEEecCCCcEEEEeec-CcEEEEEEccCCC
Q 007229 515 NREAIVWDRVSKEVKLN--NMLFHTARIN--CLAWSPSSTMVATGSI-DTCVIIYEIGKPA 570 (612)
Q Consensus 515 d~~i~iwd~~~~~~~~~--~~~~~~~~i~--~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~ 570 (612)
+.|++||+++++.... .+..|..++. +++|+|+|++|++++. |+.+++|++....
T Consensus 235 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 235 -QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp -SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred -CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 5999999999876522 1222444555 6999999999999988 9999999997633
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=255.65 Aligned_cols=331 Identities=12% Similarity=0.098 Sum_probs=252.2
Q ss_pred EECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEe--cCCceeeee
Q 007229 66 RYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMW--DSGTTVGDF 143 (612)
Q Consensus 66 ~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~--~~~~~~~~~ 143 (612)
+|+|+++++++++.|++|.+||..+++. ...+..+.. +..++|+|||++|++++.++ .+.+|+. .+++.+..+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-~~~i~~g~~-~~~v~~spdg~~l~v~~~d~---~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-VKVIDTGYA-VHISRMSASGRYLLVIGRDA---RIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-EEEEECSTT-EEEEEECTTSCEEEEEETTS---EEEEEETTSSSCEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-EEEEecCcc-cceEEECCCCCEEEEECCCC---eEEEEECcCCCCcEEEEE
Confidence 4899999999999999999999999984 445553333 88999999999999999885 6888888 678888888
Q ss_pred ccCCceEEEEEEcC----CCCEEEEEeecCCeEEEEeCCCCeeeecccc----------cc-cceEEEEECCCCCeE-EE
Q 007229 144 DGHSRRVLSCEFKP----TRPFRIATCGEDFLVNFYEGPPFKFKLSHRE----------HS-NFVNCIRFSPDGSKL-IS 207 (612)
Q Consensus 144 ~~~~~~v~~~~~~~----~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------~~-~~v~~~~~s~~~~~l-~~ 207 (612)
. +...+..++|+| +|++++++...+++|.+||..+++++..+.. |. ..+.++.++|++..+ ++
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 7 456689999999 9996444444689999999999998887654 22 378999999987654 55
Q ss_pred EEcCCcEEEEecCCCCeee--eeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 208 VSSDRKGLIYDGKSGEKIG--EFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
...++.|.+||+.+++.+. .+ .+...+..++|+|+|+++++++ .+++|.+||. .+++++..+....
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~----~tg~l~~~i~~g~--- 366 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSI----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDS----KDRRLSALVDVGK--- 366 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEE----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEET----TTTEEEEEEECSS---
T ss_pred ECCCCeEEEEEecCCCcceeEEe----ccCcCccCceECCCCCEEEEEecCCCeEEEEEC----CCCeEEEeeccCC---
Confidence 6678999999998876554 33 3456677899999999877665 5789999999 6666655443211
Q ss_pred cceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
..|..
T Consensus 367 ---------------------------------------~ph~g------------------------------------ 371 (543)
T 1nir_A 367 ---------------------------------------TPHPG------------------------------------ 371 (543)
T ss_dssp ---------------------------------------SBCCT------------------------------------
T ss_pred ---------------------------------------CCCCC------------------------------------
Confidence 00100
Q ss_pred eceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccce
Q 007229 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVM 444 (612)
Q Consensus 365 ~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (612)
T Consensus 372 -------------------------------------------------------------------------------- 371 (543)
T 1nir_A 372 -------------------------------------------------------------------------------- 371 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccceEEEEEEccC-CCeEEEEe-cCCeEEEEEccC-------cccccceeeccccCceEEEEEcCCCcEEEEEc--
Q 007229 445 SKIDLGFTVTACAIAPD-GSEAIVGG-QNGKLHIYSISG-------NTLTEEMVLEKHRGAITVIQYSPDVSMFASAD-- 513 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~-~~~l~~~~-~dg~v~i~d~~~-------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-- 513 (612)
....+ ++|+ +..++++. .|++|.+||+.+ .+. ...+..|.+.+..++|+|++++|++++
T Consensus 372 -------~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~--v~~l~~~g~~~~~v~~~pdg~~l~v~~~~ 441 (543)
T 1nir_A 372 -------RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK--VAELQGQGGGSLFIKTHPKSSHLYVDTTF 441 (543)
T ss_dssp -------TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE--EEEEECSCSCCCCEECCTTCCEEEECCTT
T ss_pred -------CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE--EEEEEcCCCCceEEEcCCCCCcEEEecCC
Confidence 00111 3455 44555554 578899999877 444 678888888889999999999999987
Q ss_pred -----CCCeEEEEecCCcceeeecc--------cccccceeEEEecCCCcEEEEee-----cCcEEEEEEccCCCcceee
Q 007229 514 -----GNREAIVWDRVSKEVKLNNM--------LFHTARINCLAWSPSSTMVATGS-----IDTCVIIYEIGKPASSRIT 575 (612)
Q Consensus 514 -----~d~~i~iwd~~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~ 575 (612)
.+++|.+||+.+++...+.+ ..+...+..++|+|||+.|+++. .|+.|.|||..+ + +++.
T Consensus 442 ~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t-~-~~~~ 519 (543)
T 1nir_A 442 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT-L-KLKA 519 (543)
T ss_dssp CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT-T-EEEE
T ss_pred CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC-c-eEEE
Confidence 26799999999988763332 34678899999999999988663 479999999998 6 6777
Q ss_pred eeccc
Q 007229 576 IKNAH 580 (612)
Q Consensus 576 ~~~~h 580 (612)
.++.+
T Consensus 520 ~i~~~ 524 (543)
T 1nir_A 520 VVKDP 524 (543)
T ss_dssp EECCT
T ss_pred eecCC
Confidence 77643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-31 Score=256.32 Aligned_cols=329 Identities=11% Similarity=0.058 Sum_probs=249.7
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEec--CCCCeeeeeecc
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG--KSGEKIGEFSSE 231 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~ 231 (612)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+..+
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--- 218 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--- 218 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE---
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE---
Confidence 3888886 699999999999999999999988873333 889999999999999999999999999 888888887
Q ss_pred CCccccEEEEEEec----CCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCC
Q 007229 232 DGHHGSIYAVSWSP----DGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306 (612)
Q Consensus 232 ~~~~~~v~~i~~~~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (612)
.+...+..++|+| ||+++++++. +++|.+||. .+.+++..+......
T Consensus 219 -~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~----~t~~~~~~i~~~g~~----------------------- 270 (543)
T 1nir_A 219 -KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG----ETLEPKQIVSTRGMT----------------------- 270 (543)
T ss_dssp -ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET----TTCCEEEEEECCEEC-----------------------
T ss_pred -ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec----cccccceeecccCcc-----------------------
Confidence 3556789999999 9999999885 899999999 888888776542100
Q ss_pred EEEEEEcCCCCCCceeecCcc-cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEE
Q 007229 307 IISIFSASNLDKAPLSFSGHV-KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFT 385 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 385 (612)
......|. ..+..+.+++.++.++++...++.|.+||..+.......
T Consensus 271 -------------~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~------------------- 318 (543)
T 1nir_A 271 -------------VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT------------------- 318 (543)
T ss_dssp -------------SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-------------------
T ss_pred -------------cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-------------------
Confidence 00000122 267778887555677888888899999988764322110
Q ss_pred ecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeE
Q 007229 386 AGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEA 465 (612)
Q Consensus 386 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 465 (612)
.+.+...+..++|+|+|+++
T Consensus 319 ------------------------------------------------------------~i~~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 319 ------------------------------------------------------------SIGAAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp ------------------------------------------------------------EEECCSSCCCEEECTTSCEE
T ss_pred ------------------------------------------------------------EeccCcCccCceECCCCCEE
Confidence 01111235678999999987
Q ss_pred EEEe-cCCeEEEEEccCcccccceeecc----ccCceEEEEEcCC-CcEEEEEc-CCCeEEEEecCC-------cceeee
Q 007229 466 IVGG-QNGKLHIYSISGNTLTEEMVLEK----HRGAITVIQYSPD-VSMFASAD-GNREAIVWDRVS-------KEVKLN 531 (612)
Q Consensus 466 ~~~~-~dg~v~i~d~~~~~~~~~~~~~~----~~~~i~~~~~s~~-~~~l~~~~-~d~~i~iwd~~~-------~~~~~~ 531 (612)
++++ .+++|.+||+.++++. ..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ .+.+ .
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~--~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v-~ 414 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLS--ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV-A 414 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEE--EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE-E
T ss_pred EEEecCCCeEEEEECCCCeEE--EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE-E
Confidence 7655 5889999999999873 33432 55444443 5676 67777775 689999999988 6665 6
Q ss_pred cccccccceeEEEecCCCcEEEEee-------cCcEEEEEEccCCCcceeeee--------cccccCeeeEEEe-cCceE
Q 007229 532 NMLFHTARINCLAWSPSSTMVATGS-------IDTCVIIYEIGKPASSRITIK--------NAHLGGVYGVAFM-DDFNV 595 (612)
Q Consensus 532 ~~~~~~~~i~~~~~s~~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~--------~~h~~~v~~~~~~-~~~~l 595 (612)
.+..|...+..++|+||+++|++++ .+++|.+||+.+.. .....+ ..+...+.++.|+ +++.|
T Consensus 415 ~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~ 493 (543)
T 1nir_A 415 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD-AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 493 (543)
T ss_dssp EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT-SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEE
T ss_pred EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC-CCeEEeechhhcccCCCCCceEeccCCCCCCEE
Confidence 6777888899999999999999987 37799999999833 322443 4567889999999 88887
Q ss_pred EEc-----cCCCeEEEEEeccC
Q 007229 596 VSS-----GEDACIRVWRLATE 612 (612)
Q Consensus 596 ~s~-----~~d~~i~~w~~~~~ 612 (612)
+.+ +.|+.|.+||.++.
T Consensus 494 ~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 494 WFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp EEEEECCTTSCCEEEEEETTTT
T ss_pred EEEeecCCCCCCeEEEEECCCc
Confidence 754 35899999998863
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=250.21 Aligned_cols=270 Identities=11% Similarity=0.070 Sum_probs=175.6
Q ss_pred ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee--eeccCCccccEEEEEEec--------CCCEEEEEeCCC
Q 007229 188 EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE--FSSEDGHHGSIYAVSWSP--------DGKKVLTVSADK 257 (612)
Q Consensus 188 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~v~~i~~~~--------~~~~l~~~~~dg 257 (612)
.|........+++++++|++++.|++|++||.++++.... +....+|.+.|.+++|+| |+++|++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 4555556666777888999999999999999998876432 333468999999999998 889999999999
Q ss_pred cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEe
Q 007229 258 SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 337 (612)
+|++||+ .++..+. .+.+|...+.+++|++
T Consensus 167 tv~~Wd~----~~~~~~~----------------------------------------------~~~~~~~~v~~v~~~p 196 (393)
T 4gq1_A 167 TLIIWRL----TDEGPIL----------------------------------------------AGYPLSSPGISVQFRP 196 (393)
T ss_dssp EEEEEEE----ETTEEEE----------------------------------------------EEEECSSCEEEEEEET
T ss_pred eEEEEEC----CCCceee----------------------------------------------eecCCCCCcEEEEECC
Confidence 9999999 4444332 2334778899999996
Q ss_pred cCCcEEEEEecCCcEEEEEcCCceeeeeceecccceE--EEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcc
Q 007229 338 ISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK--CLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPL 415 (612)
Q Consensus 338 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~--~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (612)
.+..+|++++.||.|++||+.+++.......+..... ++.... .
T Consensus 197 ~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~--------~-------------------------- 242 (393)
T 4gq1_A 197 SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT--------L-------------------------- 242 (393)
T ss_dssp TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES--------G--------------------------
T ss_pred CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc--------c--------------------------
Confidence 5467899999999999999988765443321111000 000000 0
Q ss_pred eeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEc-cCCCeEEEEecCCeEEEEEccCcccccceeecccc
Q 007229 416 DLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA-PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHR 494 (612)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 494 (612)
+ .........+...+.+++|+ ||++.+++++.|+.+++||+..++. ...+..|.
T Consensus 243 -----~------------------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~--~~~l~~~~ 297 (393)
T 4gq1_A 243 -----P------------------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND--YNEISDST 297 (393)
T ss_dssp -----G------------------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred -----c------------------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC--CceEeeec
Confidence 0 00000011234567788886 7999999999999999999987654 33444444
Q ss_pred CceEEEEE------------------cC--CCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEE
Q 007229 495 GAITVIQY------------------SP--DVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVAT 554 (612)
Q Consensus 495 ~~i~~~~~------------------s~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 554 (612)
..+..+.+ +| ++.++++++.||.|++||+.+++... .+.+|..+|.+++|+|||++||+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~-~~~~~~~~V~svafspdG~~LA~ 376 (393)
T 4gq1_A 298 MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS-IPIQLGMPIVDFCWHQDGSHLAI 376 (393)
T ss_dssp ------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE-EEEECSSCEEEEEECTTSSEEEE
T ss_pred CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE-EecCCCCcEEEEEEcCCCCEEEE
Confidence 44433333 33 44577889999999999999998864 45568899999999999999999
Q ss_pred eecCcEEEEEEccC
Q 007229 555 GSIDTCVIIYEIGK 568 (612)
Q Consensus 555 ~~~d~~i~iwd~~~ 568 (612)
++.|| +.+|.+..
T Consensus 377 as~~G-v~lvrL~g 389 (393)
T 4gq1_A 377 ATEGS-VLLTRLMG 389 (393)
T ss_dssp EESSE-EEEEEEGG
T ss_pred EeCCC-eEEEEEeC
Confidence 98777 77777653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.98 E-value=7.5e-30 Score=242.49 Aligned_cols=238 Identities=11% Similarity=-0.006 Sum_probs=187.3
Q ss_pred CceeEEEEccCCCEEE-Eec-----CC----EEEEEeC--CCCcee--eEeccCCCceEEEEECC--------------C
Q 007229 19 GRGILISGNPKTDTIL-YCN-----GR----SVLIRYL--DKPLHV--EFYGEHGYPVTVARYSP--------------N 70 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~-~~~-----~~----~i~i~~~--~~~~~~--~~~~~h~~~v~~~~~s~--------------d 70 (612)
+.+...+|+++|..++ +++ +| .+++||+ .+++++ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4778888999887544 553 46 8999999 888877 45889999998888875 2
Q ss_pred CCEEEEeeCc------CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeec
Q 007229 71 GEWIASADVS------GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD 144 (612)
Q Consensus 71 ~~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~ 144 (612)
+..++.++.+ +.|++||+.... ...+..|...+.+++|+|||++|++++.++....+.+|+.++++.. .+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence 5666666554 799999998653 3577889999999999999999999998754335667776677664 577
Q ss_pred cCCceEEEEEEcCCCCEEEEEeecCCe--EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-CC--cEEEEec
Q 007229 145 GHSRRVLSCEFKPTRPFRIATCGEDFL--VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DR--KGLIYDG 219 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~vwd~ 219 (612)
.|...+.+++|+|+|+.++++++.++. |++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 788899999999999965557776654 99999998876 456778889999999999999998886 44 6778898
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC---CcEEEEEe
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD---KSAKVWEI 264 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~iw~~ 264 (612)
.+++..... .+...+.+++|+|+|++|++++.+ ..|.+||+
T Consensus 299 ~~~~~~~l~----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 299 NGGAPQRIT----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp TSSCCEECC----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred CCCCEEEEe----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 887754333 566788999999999999988764 35666766
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=255.06 Aligned_cols=327 Identities=11% Similarity=0.080 Sum_probs=234.2
Q ss_pred CCceEEEEECCCCCEEEEeeC-cC-----eEEEeecCCCceeeeeeeecCC------------------------CeEEE
Q 007229 59 GYPVTVARYSPNGEWIASADV-SG-----SVRIWGTHNGFVLKNEFKVLSG------------------------RIDDL 108 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~------------------------~i~~~ 108 (612)
...|.+++|||||++||+++. |+ .|.+||+.+++. ...+..+.. .+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT-RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE-EEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce-eEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999988 88 899999999873 334443332 37899
Q ss_pred EECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc
Q 007229 109 QWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 109 ~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 186 (612)
+|||||++|++++.. .+.+|+.+++. ....+..|...+..++|+|||++ |+.++ ++.|++||+.+++.....
T Consensus 115 ~~SpDg~~l~~~~~~----~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGG----ELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF-VSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECTTSSEEEEEETT----EEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE-EEEEE-TTEEEEEETTTTEEEECC
T ss_pred EECCCCCEEEEEeCC----cEEEEECCCCCcceEEEcccCCcccccccCCCCCCE-EEEEe-CCcEEEEecCCCCEEEec
Confidence 999999999999873 34555555553 56678888899999999999995 77666 468999999998876655
Q ss_pred cccccc----------------eEEEEECCCCCeEEEEEcCC---------------------------------cEEEE
Q 007229 187 REHSNF----------------VNCIRFSPDGSKLISVSSDR---------------------------------KGLIY 217 (612)
Q Consensus 187 ~~~~~~----------------v~~~~~s~~~~~l~~~~~dg---------------------------------~i~vw 217 (612)
..+... +.+++|||||++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 444332 47899999999999988765 78999
Q ss_pred ecCC-CCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-----CCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 218 DGKS-GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-----DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 218 d~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
|+.+ ++...... ...+...+..++| |||++|++++. +..|.+||+ .+++....+...
T Consensus 269 d~~~~~~~~~~~~-~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~----~~g~~~~~~~~~----------- 331 (741)
T 2ecf_A 269 SPAEQAQTQWIDL-GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL----ASNQQRVLAHET----------- 331 (741)
T ss_dssp CSSTTCCCEEECC-CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET----TTCCEEEEEEEE-----------
T ss_pred ECCCCCceEEecC-CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC----CCCceEEEEEcC-----------
Confidence 9988 77554331 1147788999999 99999987764 334555655 322211111000
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
.++.+
T Consensus 332 --------------------------------------------------------~~~~~------------------- 336 (741)
T 2ecf_A 332 --------------------------------------------------------SPTWV------------------- 336 (741)
T ss_dssp --------------------------------------------------------CSSCC-------------------
T ss_pred --------------------------------------------------------CCCcC-------------------
Confidence 00000
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
.
T Consensus 337 -------------------------------------------------------------------------------~ 337 (741)
T 2ecf_A 337 -------------------------------------------------------------------------------P 337 (741)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccC-cccccceeeccccCceEEE-EEcCCCcEEEE-EcCCC--eEEEEecCC-
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISG-NTLTEEMVLEKHRGAITVI-QYSPDVSMFAS-ADGNR--EAIVWDRVS- 525 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~-~~~d~--~i~iwd~~~- 525 (612)
.+..++|+|||++++++..+|.++||.++. +. ...+..|...+..+ .|+|+++.|+. ++.++ .++||++..
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence 133578999999989999999877777652 22 35666777888887 59999987754 44455 899999864
Q ss_pred cceeeecccccccceeEEEecCCCcEEEEeecC----cEEEEEEccC
Q 007229 526 KEVKLNNMLFHTARINCLAWSPSSTMVATGSID----TCVIIYEIGK 568 (612)
Q Consensus 526 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d----~~i~iwd~~~ 568 (612)
+... ..+.. ...+..++|||||++|+....+ ..+++|+...
T Consensus 415 g~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 415 GGQP-QRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp CCCC-EECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred CCCe-eeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 3322 33443 5668899999999998866543 4688998764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=235.98 Aligned_cols=299 Identities=13% Similarity=0.064 Sum_probs=227.9
Q ss_pred CceEEEEEEcCCCCEEEEEee----cCC----eEEEEeC--CCCeee--ecccccccceEEEEECC--------------
Q 007229 147 SRRVLSCEFKPTRPFRIATCG----EDF----LVNFYEG--PPFKFK--LSHREHSNFVNCIRFSP-------------- 200 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~----~d~----~i~~wd~--~~~~~~--~~~~~~~~~v~~~~~s~-------------- 200 (612)
...+...+|.+.+..++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 346677788888876677876 457 9999999 888877 44788888888777765
Q ss_pred CCCeEEEEEcC------CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC---cEEEEEeecCCCCC
Q 007229 201 DGSKLISVSSD------RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK---SAKVWEILEDGSGG 271 (612)
Q Consensus 201 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~ 271 (612)
.+..++.++.+ +.|++||+..+. ...+ ..|...+.+++|+|||++|++++.++ .|++||+ .++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l---~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~----~tg 213 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL----ANG 213 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE---EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----TTC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE---eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEEC----CCC
Confidence 25667776664 799999997544 4444 26888999999999999999999875 8999998 555
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEE-EEecCC
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL-SSSYDG 350 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg 350 (612)
+... +..|...+.+++|++. ++.|+ +++.++
T Consensus 214 ~~~~-----------------------------------------------l~~~~~~~~~~~~spd-g~~la~~~~~~g 245 (415)
T 2hqs_A 214 AVRQ-----------------------------------------------VASFPRHNGAPAFSPD-GSKLAFALSKTG 245 (415)
T ss_dssp CEEE-----------------------------------------------EECCSSCEEEEEECTT-SSEEEEEECTTS
T ss_pred cEEE-----------------------------------------------eecCCCcccCEEEcCC-CCEEEEEEecCC
Confidence 4321 2235567788888843 55555 666665
Q ss_pred c--EEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEE
Q 007229 351 A--IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELAL 428 (612)
Q Consensus 351 ~--i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (612)
. |++||+.+++...+..
T Consensus 246 ~~~i~~~d~~~~~~~~l~~------------------------------------------------------------- 264 (415)
T 2hqs_A 246 SLNLYVMDLASGQIRQVTD------------------------------------------------------------- 264 (415)
T ss_dssp SCEEEEEETTTCCEEECCC-------------------------------------------------------------
T ss_pred CceEEEEECCCCCEEeCcC-------------------------------------------------------------
Confidence 4 7888877654322111
Q ss_pred EEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec-CC--eEEEEEccCcccccceeeccccCceEEEEEcCC
Q 007229 429 VSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ-NG--KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD 505 (612)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (612)
+...+.+++|+|||++|++++. ++ .|++||+.+++. ..+..+...+.+++|+||
T Consensus 265 --------------------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 265 --------------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSD 321 (415)
T ss_dssp --------------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTT
T ss_pred --------------------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCC
Confidence 2235788999999999998876 44 688889988764 345556778999999999
Q ss_pred CcEEEEEcCC---CeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCc---EEEEEEccCCCcceeeeecc
Q 007229 506 VSMFASADGN---REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDT---CVIIYEIGKPASSRITIKNA 579 (612)
Q Consensus 506 ~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~ 579 (612)
|++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+|||++|++++.++ .|++||+.. .....+..
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~--~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g---~~~~~l~~ 395 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG---RFKARLPA 395 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS---CCEEECCC
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEE--EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC---CcEEEeeC
Confidence 9999988764 68999999998774 244454 899999999999999988777 899999875 56778899
Q ss_pred cccCeeeEEEec
Q 007229 580 HLGGVYGVAFMD 591 (612)
Q Consensus 580 h~~~v~~~~~~~ 591 (612)
|.+.|.+++|++
T Consensus 396 ~~~~v~~~~~~~ 407 (415)
T 2hqs_A 396 TDGQVKFPAWSP 407 (415)
T ss_dssp SSSEEEEEEECC
T ss_pred CCCCCcCCcccc
Confidence 999999999994
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=254.66 Aligned_cols=235 Identities=10% Similarity=0.033 Sum_probs=186.3
Q ss_pred CCceeEEEEccCCCEEEEec--CC-----EEEEEeCCCCceeeEeccCCC------------------------ceEEEE
Q 007229 18 RGRGILISGNPKTDTILYCN--GR-----SVLIRYLDKPLHVEFYGEHGY------------------------PVTVAR 66 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~~-----~i~i~~~~~~~~~~~~~~h~~------------------------~v~~~~ 66 (612)
...+.+++|||||++|++++ ++ .|.+||+++++....+..|.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 44689999999999999987 45 899999999988777765543 389999
Q ss_pred ECCCCCEEEEeeCcCeEEEeecCCC---ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee
Q 007229 67 YSPNGEWIASADVSGSVRIWGTHNG---FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF 143 (612)
Q Consensus 67 ~s~d~~~las~~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~ 143 (612)
|||||++|++++. +.|.+||+.++ + +. .+..|...+..++|||||++|++++.+ .+.+|+.++++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-~~-~l~~~~~~~~~~~~SPDG~~la~~~~~----~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA-VR-QLTHGEGFATDAKLSPKGGFVSFIRGR----NLWVIDLASGRQMQLT 188 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTS-CC-BCCCSSSCEEEEEECTTSSEEEEEETT----EEEEEETTTTEEEECC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcce-EE-EcccCCcccccccCCCCCCEEEEEeCC----cEEEEecCCCCEEEec
Confidence 9999999999986 89999999987 4 32 466778899999999999999999865 2455555566665554
Q ss_pred ccCCce----------------EEEEEEcCCCCEEEEEeecCC---------------------------------eEEE
Q 007229 144 DGHSRR----------------VLSCEFKPTRPFRIATCGEDF---------------------------------LVNF 174 (612)
Q Consensus 144 ~~~~~~----------------v~~~~~~~~~~~~l~~~~~d~---------------------------------~i~~ 174 (612)
..+... +..++|+|||++ |++++.|+ .|++
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 444432 478999999995 77776655 8899
Q ss_pred EeCCC-Ceeeeccc--ccccceEEEEECCCCCeEEEEEc-----CCcEEEEecCCCCeeeeeeccCCccc----cEEEEE
Q 007229 175 YEGPP-FKFKLSHR--EHSNFVNCIRFSPDGSKLISVSS-----DRKGLIYDGKSGEKIGEFSSEDGHHG----SIYAVS 242 (612)
Q Consensus 175 wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~----~v~~i~ 242 (612)
||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+++....+. .+.. .+..++
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH---ETSPTWVPLHNSLR 343 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE---EECSSCCCCCSCCE
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE---cCCCCcCCcCCceE
Confidence 99988 77654432 47788999999 99999997764 5679999999998776663 2221 346889
Q ss_pred EecCCCEEEEEeCCCcEEEEEe
Q 007229 243 WSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 243 ~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+|||+++++++.+|.+++|.+
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~ 365 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRI 365 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEE
T ss_pred ECCCCeEEEEecCCCccEEEEE
Confidence 9999998888889999999987
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=252.32 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=174.6
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCC---ceEEEEECCCCCEEEEeeCc---------CeEEEe
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY---PVTVARYSPNGEWIASADVS---------GSVRIW 86 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~las~~~d---------~~i~iw 86 (612)
..+.+++|||||++++.+.++.|++||+++++....+.+|.. .|.+++|||||++||+++.+ +.|.+|
T Consensus 17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 457789999999988775689999999999998888887765 49999999999999999764 788999
Q ss_pred ecCCCceeeeeee---ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceE-------------
Q 007229 87 GTHNGFVLKNEFK---VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRV------------- 150 (612)
Q Consensus 87 d~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v------------- 150 (612)
|+.+++. ..+. .|...+..++|||||++|++++... +.+|+.++++.......+...+
T Consensus 97 d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~----i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENN----IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEETTE----EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCce--EeccCCccccccccccEECCCCCEEEEEECCe----EEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 9998873 2233 3444588999999999999998742 4444444666665555444333
Q ss_pred -----EEEEEcCCCCEEEEEee-cCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe
Q 007229 151 -----LSCEFKPTRPFRIATCG-EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 151 -----~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
.+++|+|||++ |++++ .++.+.+|++..... .+...+..+.|.++|.. ..+..|++||+.+++.
T Consensus 171 ~~~~~~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~ 240 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTH 240 (723)
T ss_dssp TSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCC
T ss_pred eccCcceEEECCCCCE-EEEEEECCCccceEEeeccCC-----cCCCcceeccCCCCCCC----CCeeEEEEEECCCCce
Confidence 78999999996 55555 445778887653221 13345788999988863 3346899999998886
Q ss_pred eeeeecc---CCccccEEEEEEecCCCEEEEEeCC----CcEEEEEeecCCCCCeeEee
Q 007229 225 IGEFSSE---DGHHGSIYAVSWSPDGKKVLTVSAD----KSAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 225 ~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~ 276 (612)
...+... ..+...+..++|+|||+++++.... ..|.+||+ .+++....
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~----~~g~~~~~ 295 (723)
T 1xfd_A 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA----TTGVCTKK 295 (723)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET----TTCCEEEE
T ss_pred eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC----CCCcceEE
Confidence 5555210 1136789999999999988776533 57889998 66655443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=250.23 Aligned_cols=359 Identities=12% Similarity=0.014 Sum_probs=234.2
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS 136 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~ 136 (612)
..+.+++|||||+++++ +.||+|++||+.+++. ...+..|.. .+.+++|||||++|++++.+...
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~---------- 84 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI---------- 84 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC----------
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-EEEeccccccccccceEEECCCCCEEEEEecCccc----------
Confidence 34678999999998876 6899999999999873 445555554 48899999999999888765421
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeee--ecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK--LSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
...+.++.+++||+.+++.. ....+|...+..++|||||++|++++. +.|
T Consensus 85 ---------------------------~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i 136 (723)
T 1xfd_A 85 ---------------------------YQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNI 136 (723)
T ss_dssp ---------------------------SSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEE
T ss_pred ---------------------------eeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeE
Confidence 00123578999999888752 223345556889999999999999885 899
Q ss_pred EEEecCCCCeeeeeeccCCccc------------------cEEEEEEecCCCEEEEEeCC-CcEEEEEeecCCCCCeeEe
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHG------------------SIYAVSWSPDGKKVLTVSAD-KSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~------------------~v~~i~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~ 275 (612)
++||+.+++...... .+.. .+.+++|+|||++|++++.+ +.+.+|++ .....
T Consensus 137 ~~~~~~~g~~~~~~~---~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~----~~~~~-- 207 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVS---TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL----PTYTG-- 207 (723)
T ss_dssp EEESSSSSCCEEEEC---CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE----CCCSS--
T ss_pred EEEECCCCceEEEec---CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe----eccCC--
Confidence 999999887765542 2222 23789999999999988765 46777776 11000
Q ss_pred eeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEE
Q 007229 276 TFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 355 (612)
.+...+..+.+... +.. ..+..|++|
T Consensus 208 -------------------------------------------------~~~~~~~~~~~~~~-G~~----~~~~~l~~~ 233 (723)
T 1xfd_A 208 -------------------------------------------------SIYPTVKPYHYPKA-GSE----NPSISLHVI 233 (723)
T ss_dssp -------------------------------------------------SSSCCCEEEECCBT-TSC----CCEEEEEEE
T ss_pred -------------------------------------------------cCCCcceeccCCCC-CCC----CCeeEEEEE
Confidence 01112333444321 211 123456677
Q ss_pred EcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccE
Q 007229 356 IRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGV 435 (612)
Q Consensus 356 d~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (612)
|+.+++.......+
T Consensus 234 d~~~~~~~~~l~~~------------------------------------------------------------------ 247 (723)
T 1xfd_A 234 GLNGPTHDLEMMPP------------------------------------------------------------------ 247 (723)
T ss_dssp ESSSSCCCEECCCC------------------------------------------------------------------
T ss_pred ECCCCceeEEeeCC------------------------------------------------------------------
Confidence 76654421111000
Q ss_pred EEeecccceeeecccceEEEEEEccCCCeEEEEecC----CeEEEEEccCcccccceeecc-ccCce----EEEEEcCCC
Q 007229 436 ILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN----GKLHIYSISGNTLTEEMVLEK-HRGAI----TVIQYSPDV 506 (612)
Q Consensus 436 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~-~~~~i----~~~~~s~~~ 506 (612)
.....+...+..++|||||+++++.... ..|++||+.+++.. ..+.. +...+ ..++|+|||
T Consensus 248 --------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~spdg 317 (723)
T 1xfd_A 248 --------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT--KKHEDESEAWLHRQNEEPVFSKDG 317 (723)
T ss_dssp --------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE--EEEEEECSSCCCCCCCCCEECTTS
T ss_pred --------ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce--EEEEeccCCEEeccCCCceEcCCC
Confidence 0000113468899999999998776543 57999999988762 33322 33433 378999999
Q ss_pred cEEEE--EcCCC------eEEEEe-cCCcce--eeecccccccceeE-EEecCCCcEEEEeecC---cEEEEEEccCCCc
Q 007229 507 SMFAS--ADGNR------EAIVWD-RVSKEV--KLNNMLFHTARINC-LAWSPSSTMVATGSID---TCVIIYEIGKPAS 571 (612)
Q Consensus 507 ~~l~~--~~~d~------~i~iwd-~~~~~~--~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~ 571 (612)
+.|+. ...++ .|++|| ..+++. . ..+..+...+.. ++|+|||+.|+..+.+ +.++||++...+.
T Consensus 318 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI-QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC-CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred CeEEEEEecccCCCcceeEEEEEeccCCCCccce-eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 98775 44666 577777 444441 2 233333334444 7999999999766554 7899999976331
Q ss_pred ceeeeecc---cccCeeeEEEe-cCceEEEc
Q 007229 572 SRITIKNA---HLGGVYGVAFM-DDFNVVSS 598 (612)
Q Consensus 572 ~~~~~~~~---h~~~v~~~~~~-~~~~l~s~ 598 (612)
.....+.. |...+..++|+ ++++|+..
T Consensus 397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp CCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred CCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 23334443 67789999999 88876653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=237.95 Aligned_cols=321 Identities=13% Similarity=0.111 Sum_probs=220.7
Q ss_pred eEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-----------------CCeEEEEECCCCCEEEEEeCCC
Q 007229 62 VTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-----------------GRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 62 v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
+..+.|+ |+.+++++.|+ | +||+.+++.+...+..+. ..|.+++|||| ++++.+.+.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~- 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQG- 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETT-
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECC-
Confidence 4557777 56677777777 8 999999874202333333 56999999999 777766553
Q ss_pred CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-----Ceeeecccccccc-------
Q 007229 125 GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-----FKFKLSHREHSNF------- 192 (612)
Q Consensus 125 ~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~------- 192 (612)
.+.+|+.++++. ..+..+...+.+++|+|||++ |+.+ .++.|++||+.+ ++.......+...
T Consensus 102 ---~i~~~d~~~~~~-~~l~~~~~~~~~~~~SpdG~~-la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 102 ---GLVGFDMLARKV-TYLFDTNEETASLDFSPVGDR-VAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp ---EEEEEETTTTEE-EEEECCTTCCTTCEECTTSSE-EEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred ---EEEEEECCCCce-EEccCCcccccCCcCCCCCCE-EEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 345555555544 445567778899999999995 6664 689999999998 7766544444333
Q ss_pred -------eEEEEECCCCCeEEEEE---------------------------------cCCcEEEEecCCCCeeeeeeccC
Q 007229 193 -------VNCIRFSPDGSKLISVS---------------------------------SDRKGLIYDGKSGEKIGEFSSED 232 (612)
Q Consensus 193 -------v~~~~~s~~~~~l~~~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~ 232 (612)
+.+++|+|||++|++++ .+..|++||+.+++...... ..
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-GE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-CS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-CC
Confidence 48899999999999987 34679999999887654431 12
Q ss_pred CccccEEEEEEecCCCEEEEEeCCC-----cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCE
Q 007229 233 GHHGSIYAVSWSPDGKKVLTVSADK-----SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (612)
.+...+..++|+|||++|++++.++ .|.+||+ .+++....+.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~----~~g~~~~~~~----------------------------- 301 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA----ETGRFVRTLF----------------------------- 301 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET----TTCCEEEEEE-----------------------------
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC----CCCceeeEEE-----------------------------
Confidence 4667899999999999999887665 6777776 3331111000
Q ss_pred EEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEec
Q 007229 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAG 387 (612)
Q Consensus 308 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 387 (612)
.....+.
T Consensus 302 -------------------------------------~~~~~~~------------------------------------ 308 (706)
T 2z3z_A 302 -------------------------------------VETDKHY------------------------------------ 308 (706)
T ss_dssp -------------------------------------EEECSSC------------------------------------
T ss_pred -------------------------------------EccCCCe------------------------------------
Confidence 0000000
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc--CCCeE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP--DGSEA 465 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l 465 (612)
...+.+++|+| ||+++
T Consensus 309 --------------------------------------------------------------~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 309 --------------------------------------------------------------VEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp --------------------------------------------------------------CCCCSCCEECTTCSSEEE
T ss_pred --------------------------------------------------------------ECccCCceeecCCCCEEE
Confidence 00124568999 99999
Q ss_pred EEEecCCeEEEEEcc-CcccccceeeccccCceEE-EEEcCCCcEEEEEcC-CC----eEEEEecCCcceeeeccccccc
Q 007229 466 IVGGQNGKLHIYSIS-GNTLTEEMVLEKHRGAITV-IQYSPDVSMFASADG-NR----EAIVWDRVSKEVKLNNMLFHTA 538 (612)
Q Consensus 466 ~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~ 538 (612)
+++..+|.+++|.++ ++.. ...+..|...+.. ++|+|+++.|+.++. ++ .|..||+.+++. ..+. |..
T Consensus 327 ~~~~~~g~~~l~~~~~~~~~--~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~-~~~ 401 (706)
T 2z3z_A 327 WQSRRDGWNHLYLYDTTGRL--IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT--KDLT-PES 401 (706)
T ss_dssp EEECTTSSCEEEEEETTSCE--EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC--EESC-CSS
T ss_pred EEEccCCccEEEEEECCCCE--EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc--eecc-CCC
Confidence 999999988888876 3433 4556677777877 799999988766554 43 677778877664 2333 667
Q ss_pred ceeEEEecCCCcEEEEeecC----cEEEEEEccC
Q 007229 539 RINCLAWSPSSTMVATGSID----TCVIIYEIGK 568 (612)
Q Consensus 539 ~i~~~~~s~~~~~l~s~~~d----~~i~iwd~~~ 568 (612)
.+.+++|+|||++|+....+ +.|++||+.+
T Consensus 402 ~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 402 GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 79999999999988876443 5699999987
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=236.72 Aligned_cols=231 Identities=12% Similarity=0.112 Sum_probs=166.7
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCcee-eEeccCC-----------------CceEEEEECCCCCEEEEeeCcCe
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHV-EFYGEHG-----------------YPVTVARYSPNGEWIASADVSGS 82 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~-~~~~~h~-----------------~~v~~~~~s~d~~~las~~~d~~ 82 (612)
+..+.|+ |+.+++..+..| +||+.+++.+ ..+..|. ..|.+++|||| +.++.+. ++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~ 102 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGG 102 (706)
T ss_dssp CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTE
T ss_pred CCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCE
Confidence 4557777 556666664348 9999999873 3344443 56999999999 6666553 599
Q ss_pred EEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-----CceeeeeccCCce--------
Q 007229 83 VRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-----GTTVGDFDGHSRR-------- 149 (612)
Q Consensus 83 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-----~~~~~~~~~~~~~-------- 149 (612)
|++||+.+++ + ..+..+...+.+++|||||++|+++.+ + .+.+|+.++ ++.......+...
T Consensus 103 i~~~d~~~~~-~-~~l~~~~~~~~~~~~SpdG~~la~~~~-~---~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 103 LVGFDMLARK-V-TYLFDTNEETASLDFSPVGDRVAYVRN-H---NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp EEEEETTTTE-E-EEEECCTTCCTTCEECTTSSEEEEEET-T---EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred EEEEECCCCc-e-EEccCCcccccCCcCCCCCCEEEEEEC-C---eEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 9999999886 3 345556778999999999999999754 3 355666556 6666555444443
Q ss_pred ------EEEEEEcCCCCEEEEEee---------------------------------cCCeEEEEeCCCCeeeecc--cc
Q 007229 150 ------VLSCEFKPTRPFRIATCG---------------------------------EDFLVNFYEGPPFKFKLSH--RE 188 (612)
Q Consensus 150 ------v~~~~~~~~~~~~l~~~~---------------------------------~d~~i~~wd~~~~~~~~~~--~~ 188 (612)
+.+++|+|||++ |++++ .+..|++||+.+++..... ..
T Consensus 177 ~ee~~~~~~~~~SpDg~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSC-LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGCTTCCCSEEECTTSSE-EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhcCCCceEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 488999999995 66665 4578999999998865543 25
Q ss_pred cccceEEEEECCCCCeEEEEEcCC-----cEEEEecCCCCeeeeeeccCCcc---ccEEEEEEec--CCCEEEEEeCCCc
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDR-----KGLIYDGKSGEKIGEFSSEDGHH---GSIYAVSWSP--DGKKVLTVSADKS 258 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~---~~v~~i~~~~--~~~~l~~~~~dg~ 258 (612)
|...+.+++|+|||++|++++.++ .|++||+.+++....+... .+. ..+..++|+| ||++++++..+|.
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE-TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE-ECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc-cCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 677899999999999999988776 8999999998444443211 111 2346789999 9999999989999
Q ss_pred EEEEEe
Q 007229 259 AKVWEI 264 (612)
Q Consensus 259 i~iw~~ 264 (612)
+++|.+
T Consensus 335 ~~l~~~ 340 (706)
T 2z3z_A 335 NHLYLY 340 (706)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 999998
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-25 Score=205.78 Aligned_cols=240 Identities=10% Similarity=-0.008 Sum_probs=180.7
Q ss_pred EEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-cCeEEEeecCCCceeeeeeee
Q 007229 24 ISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-SGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 24 ~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-d~~i~iwd~~~~~~~~~~~~~ 100 (612)
..|+++++++++.. ++.|.+||+++++....+..+...+ +++|+|||++|++++. ++.|.+||..+++.....+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45677777755554 7899999999999988887777777 9999999997776655 889999999998842556666
Q ss_pred cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe-EEEEeCCC
Q 007229 101 LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL-VNFYEGPP 179 (612)
Q Consensus 101 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~~wd~~~ 179 (612)
+.....+++|+|||++|++...++....+.+|+.++++.+..+..+. ....++|+|++++++++...++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 66666669999999999954444231246777777888888776544 45899999999876777777788 99999875
Q ss_pred Ceeee----cccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCe---eeeeeccCCccccEEEEEEecCCCEEE
Q 007229 180 FKFKL----SHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEK---IGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 180 ~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
...+. ........+..++|+|+|+++++++ .++.|.+||+.+++. +..+ .....+..++|+|+|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV----GTNNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE----ECSSCCCCEEECTTSSEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec----cCCCCCceEEECCCCCEEE
Confidence 43321 1113345689999999999776655 588999999999988 6666 3446678999999999777
Q ss_pred EEe-CCCcEEEEEeecCCCCCee
Q 007229 252 TVS-ADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 252 ~~~-~dg~i~iw~~~~~~~~~~~ 273 (612)
++. .++.|.+||+ .+++.
T Consensus 237 v~~~~~~~i~~~d~----~~~~~ 255 (331)
T 3u4y_A 237 VLTESTVDVFNFNQ----LSGTL 255 (331)
T ss_dssp EECSSEEEEEEEET----TTTEE
T ss_pred EEEcCCCEEEEEEC----CCCce
Confidence 665 4678999998 66665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-25 Score=206.78 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=137.4
Q ss_pred EEEEeeCcCeEEEeecC-CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCc--eeeeeccCC
Q 007229 73 WIASADVSGSVRIWGTH-NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGT--TVGDFDGHS 147 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~--~~~~~~~~~ 147 (612)
++++++.|+.|++||+. +++........+...+.+++|+|+|++|++++.+.. .+.+|..+ +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF--RVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTT--EEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCC--eEEEEEecCCCCceeeccccccCC
Confidence 44455789999999996 333222233457788999999999999999888633 47788777 444 344555444
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeC---CCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCC-C
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEG---PPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKS-G 222 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~ 222 (612)
.+..++|+|+++++++++..++.|.+||+ ...+....+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ +
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 78899999999975566666899999999 444444444433 4588999999999888887 799999999987 5
Q ss_pred Ceeeee--eccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEe
Q 007229 223 EKIGEF--SSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 223 ~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~ 264 (612)
+..... .........+..++|+|+++++++++ .++.+.+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~ 207 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL 207 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 543211 11113345788999999999776655 7889999998
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-24 Score=200.19 Aligned_cols=284 Identities=13% Similarity=0.116 Sum_probs=196.9
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCe-eeeeec
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEK-IGEFSS 230 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~-~~~~~~ 230 (612)
..|.+++++++++++.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~- 80 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ- 80 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-
Confidence 45777778789999999999999999999888777666667 9999999998777766 88999999999987 55552
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCC---cEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCE
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADK---SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (612)
.+..+..+++|+|+++++++...++ .|.+||+ .+++.+..+...
T Consensus 81 --~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~----~~~~~~~~~~~~--------------------------- 127 (331)
T 3u4y_A 81 --EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF----LKNKFISTIPIP--------------------------- 127 (331)
T ss_dssp --ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET----TTTEEEEEEECC---------------------------
T ss_pred --cCCCCccceEECCCCCEEEEecCCCCcccEEEEEC----CCCCeEEEEECC---------------------------
Confidence 3444444499999999999555443 8999999 777766544321
Q ss_pred EEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCc-EEEEEcCCceeeeeceecccceEEEEeeccEEEEe
Q 007229 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA-IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386 (612)
Q Consensus 308 i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 386 (612)
.....+++++....++++...++. +.+|++..........
T Consensus 128 --------------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~------------------- 168 (331)
T 3u4y_A 128 --------------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG------------------- 168 (331)
T ss_dssp --------------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------------------
T ss_pred --------------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------------------
Confidence 233567777432345555566677 9999876432110000
Q ss_pred cCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEE
Q 007229 387 GFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAI 466 (612)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 466 (612)
...+.....+..++|+|||++++
T Consensus 169 ---------------------------------------------------------~~~~~~~~~~~~~~~spdg~~l~ 191 (331)
T 3u4y_A 169 ---------------------------------------------------------QEFISGGTRPFNITFTPDGNFAF 191 (331)
T ss_dssp ---------------------------------------------------------EEEECSSSSEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------CccccCCCCccceEECCCCCEEE
Confidence 00011123467899999999766
Q ss_pred EEe-cCCeEEEEEccCccccc-ceeeccccCceEEEEEcCCCcEEEEEc-CCCeEEEEecCCcceee-eccc----cccc
Q 007229 467 VGG-QNGKLHIYSISGNTLTE-EMVLEKHRGAITVIQYSPDVSMFASAD-GNREAIVWDRVSKEVKL-NNML----FHTA 538 (612)
Q Consensus 467 ~~~-~dg~v~i~d~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~~~~----~~~~ 538 (612)
+++ .++.|++||+.+++... ...+. ....+..++|+|||++|+.++ .++.|.+||+.+++... ..+. .+..
T Consensus 192 v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 3u4y_A 192 VANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR 270 (331)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG
T ss_pred EEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC
Confidence 555 68899999998877511 22333 346678999999999776554 57889999999887621 1111 1122
Q ss_pred c---eeEEEecCCCcEEEEee-cCcEEEEEEccC
Q 007229 539 R---INCLAWSPSSTMVATGS-IDTCVIIYEIGK 568 (612)
Q Consensus 539 ~---i~~~~~s~~~~~l~s~~-~d~~i~iwd~~~ 568 (612)
+ ...++|+|||++|++++ .++.|++||+..
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 2 35589999999886555 567999999987
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-24 Score=200.73 Aligned_cols=229 Identities=11% Similarity=0.122 Sum_probs=161.3
Q ss_pred CEEEEe-c-CCEEEEEeCC-CCc--eeeEeccCCCceEEEEECCCCCEEEEeeCc-CeEEEeecC--CCce-eeeeeeec
Q 007229 31 DTILYC-N-GRSVLIRYLD-KPL--HVEFYGEHGYPVTVARYSPNGEWIASADVS-GSVRIWGTH--NGFV-LKNEFKVL 101 (612)
Q Consensus 31 ~~l~~~-~-~~~i~i~~~~-~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d-~~i~iwd~~--~~~~-~~~~~~~~ 101 (612)
++++++ . ++.|.+|+++ +++ .+. ...|...+.+++|+|+|++|++++.+ +.|.+|++. +++. ....+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~- 82 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL- 82 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-
Confidence 344444 3 7999999996 332 233 34578889999999999999988876 999999998 5542 2223333
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
...+..++|+|++++|++++.... .+.+|+.+ ..+.+..+..+ ..+.+++|+|+++++++++..++.|++||+.
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 83 PGSLTHISTDHQGQFVFVGSYNAG--NVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTT--EEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CCCCcEEEEcCCCCEEEEEecCCC--eEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 348899999999999988876443 46777773 33445555544 3588999999999655555489999999998
Q ss_pred C-Ceeee----cccc-cccceEEEEECCCCCeEEEEE-cCCcEEEEecCC--CCe--eeeeec-cC--CccccEEEEEEe
Q 007229 179 P-FKFKL----SHRE-HSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKS--GEK--IGEFSS-ED--GHHGSIYAVSWS 244 (612)
Q Consensus 179 ~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~--~~~--~~~~~~-~~--~~~~~v~~i~~~ 244 (612)
+ ++... .+.. ....+..++|+|+++++++++ .++.+.+|++.. ++. ...+.. .. .....+..++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 7 54432 2222 334788999999999876665 789999999953 433 222211 11 113467789999
Q ss_pred cCCCEEEEEe-CCCcEEEEEe
Q 007229 245 PDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 245 ~~~~~l~~~~-~dg~i~iw~~ 264 (612)
|++++|+++. .++.|.+|++
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEE
Confidence 9998887554 6889999998
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=205.63 Aligned_cols=234 Identities=16% Similarity=0.089 Sum_probs=183.3
Q ss_pred CCCceeEEEEccCCCEEEEecCCEEEEEeCCC-CceeeEeccC-CCceEEEEECCCCCEEEEee--CcCeEEEeec--CC
Q 007229 17 ERGRGILISGNPKTDTILYCNGRSVLIRYLDK-PLHVEFYGEH-GYPVTVARYSPNGEWIASAD--VSGSVRIWGT--HN 90 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~-~~~~~~~~~h-~~~v~~~~~s~d~~~las~~--~d~~i~iwd~--~~ 90 (612)
+.+.+.+++|+|||++|+++.++.|.+||+++ ++......+| ...|.+++|+|||++|++++ .++...||.+ .+
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 119 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG 119 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence 45689999999999999999999999999999 8877766666 47899999999999999998 3355566555 44
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEE-EeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVA-CGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
++ ...+..+ ..+..++|+||+++|+. +..++ .+.+|.++ .+.....+..|...+.+++|+|+++++++++..
T Consensus 120 ~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 120 GT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp CC--CEECCSS-SSEEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred Cc--eEEeecC-CCccceEECCCCCEEEEEECCCC---ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 43 2233333 35899999999999884 44554 46788876 344566777888999999999999965555557
Q ss_pred CCeEEEEeCC-CCeeeecccccccceEEEEECCCCCeEEEEEcC-----------CcEEEEecCCCCeeeeeeccCCccc
Q 007229 169 DFLVNFYEGP-PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD-----------RKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 169 d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
++.+++|++. .+.....+..|...+.+++|+|++++|++++.+ +.|++||+.+++....... .+|..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~ 272 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL-FGGQG 272 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE-EESTT
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc-CCCCc
Confidence 8999999876 455566677788889999999999999988876 5699999988876433321 25677
Q ss_pred cEEEEEEecCCCEEEEEeCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg 257 (612)
.+..++|+|++++|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 889999999999998887653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=197.59 Aligned_cols=247 Identities=12% Similarity=0.070 Sum_probs=195.0
Q ss_pred CceeEEEEccCCCEEEEec--------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcCeEEEeecC
Q 007229 19 GRGILISGNPKTDTILYCN--------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSGSVRIWGTH 89 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~~i~iwd~~ 89 (612)
..+..++|+|||+++++++ ++.|.+||..+++.+..+.. ...+..++|+|||++++. ...++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 4678899999999998887 46899999999998887764 445789999999996554 5567999999999
Q ss_pred CCceeeeeeeecCC---------CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC
Q 007229 90 NGFVLKNEFKVLSG---------RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 90 ~~~~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (612)
+++. ...+..+.. .+..++|+|+|+++++++..... .+.+++.++++.+..+..+...+..++|+|+++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKES-VIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSC-EEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCc-eEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9884 334444332 27899999999988887732111 456666668888888886777788999999999
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccc----cccceEEEEECCCCCeEEEEEcC-CcEEEEecCCCCeeeeeeccCCcc
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHRE----HSNFVNCIRFSPDGSKLISVSSD-RKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
+ +++++.++.|.+||..+++....+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+..+...
T Consensus 198 ~-l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---- 272 (353)
T 3vgz_A 198 R-LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP---- 272 (353)
T ss_dssp E-EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS----
T ss_pred E-EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC----
Confidence 5 77778899999999999988876553 55668899999999988777654 89999999999988877421
Q ss_pred ccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeee
Q 007229 236 GSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
. ...++|+|++++++++. .++.|.+||. .+++.+..+.
T Consensus 273 ~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~----~~~~~~~~~~ 311 (353)
T 3vgz_A 273 E-SLAVLFNPARNEAYVTHRQAGKVSVIDA----KSYKVVKTFD 311 (353)
T ss_dssp S-CCCEEEETTTTEEEEEETTTTEEEEEET----TTTEEEEEEE
T ss_pred C-CceEEECCCCCEEEEEECCCCeEEEEEC----CCCeEEEEEe
Confidence 1 25689999999766665 6899999999 7777776654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=198.41 Aligned_cols=218 Identities=15% Similarity=0.075 Sum_probs=170.8
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC-Cceeeeeeeec-CCCeEEEEECCCCC
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN-GFVLKNEFKVL-SGRIDDLQWSPDGL 115 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~-~~~~~~~~~~~-~~~i~~~~~s~~~~ 115 (612)
++.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|.+||+.+ ++ .......+ ...+.+++|+||++
T Consensus 21 ~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~ 97 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISPDGA 97 (297)
T ss_dssp CEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECTTSS
T ss_pred ceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECCCCC
Confidence 6899999999988765 566999999999999999999986 78999999998 76 33344444 46789999999999
Q ss_pred EEEEEeCCCCeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC--CCCeeeecccccccc
Q 007229 116 RIVACGDGKGKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG--PPFKFKLSHREHSNF 192 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~~~ 192 (612)
+|++++.+... ...+|.++. +.....+..+. .+..++|+|++++++++++.++.+++|++ .+++ ...+..+...
T Consensus 98 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 174 (297)
T 2ojh_A 98 LYAISDKVEFG-KSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGR 174 (297)
T ss_dssp EEEEEECTTTS-SCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSC
T ss_pred EEEEEEeCCCC-cceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCc
Confidence 99999843211 346888873 33344554444 48899999999976668889999999985 4443 3456677888
Q ss_pred eEEEEECCCCCeEEEEE-cCCcEEEEecC-CCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-----------CcE
Q 007229 193 VNCIRFSPDGSKLISVS-SDRKGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-----------KSA 259 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----------g~i 259 (612)
+.+++|+|++++|++++ .++.+++|++. .+.....+ ..+...+..++|+|++++|++++.+ +.|
T Consensus 175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI---TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC---CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE---ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 99999999999888776 48999999986 45555555 2667789999999999999988766 458
Q ss_pred EEEEe
Q 007229 260 KVWEI 264 (612)
Q Consensus 260 ~iw~~ 264 (612)
.+||+
T Consensus 252 ~~~d~ 256 (297)
T 2ojh_A 252 QLMDM 256 (297)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 88887
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=201.42 Aligned_cols=300 Identities=10% Similarity=0.002 Sum_probs=206.0
Q ss_pred CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCc--eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-c--
Q 007229 115 LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR--RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-H-- 189 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~-- 189 (612)
++|++++.++ .+.+|+..+++.+..+..... .+..++|+|+++++++++..++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~---~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPD---KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTT---EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCC---eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 3677777776 466777778888877763332 5788999999987778888889999999999988766542 1
Q ss_pred --ccceEEEEECCCCCeEEEEE------------cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 190 --SNFVNCIRFSPDGSKLISVS------------SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 190 --~~~v~~~~~s~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
...+..++|+|+|++|+++. .++.|.+||+.+++....+. ....+..++|+|++++++++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----APRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECTTSSCEEEE--
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe----CCCCcceeEECCCCCEEEEe--
Confidence 23677899999999998886 57999999999988887772 34557789999999988887
Q ss_pred CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEE
Q 007229 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTA 335 (612)
Q Consensus 256 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (612)
++.|.+||+ .+++....+.... +..++ .+
T Consensus 153 ~~~i~~~d~----~~~~~~~~~~~~~--------------------------------------------~~~~~---~~ 181 (337)
T 1pby_B 153 GRDLHVMDP----EAGTLVEDKPIQS--------------------------------------------WEAET---YA 181 (337)
T ss_dssp SSSEEEEET----TTTEEEEEECSTT--------------------------------------------TTTTT---BC
T ss_pred CCeEEEEEC----CCCcEeeeeeccc--------------------------------------------cCCCc---ee
Confidence 688999999 7776655443221 00000 11
Q ss_pred EecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcc
Q 007229 336 LKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPL 415 (612)
Q Consensus 336 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 415 (612)
++ ++..++..+..+....+ .
T Consensus 182 s~-dg~~l~~~~~~~~~~~~--------------------------------------~--------------------- 201 (337)
T 1pby_B 182 QP-DVLAVWNQHESSGVMAT--------------------------------------P--------------------- 201 (337)
T ss_dssp CC-BCCCCCCCCTTTTEEEE--------------------------------------E---------------------
T ss_pred CC-CccEEeeeccCCCceee--------------------------------------e---------------------
Confidence 21 12222222211111100 0
Q ss_pred eeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccC
Q 007229 416 DLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRG 495 (612)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~ 495 (612)
.......++..... .....|.+||+.+++.. ...+..+..
T Consensus 202 --------------------------------------~~~~~~~~~~~~~~-~~~~~v~~~d~~~~~~~-~~~~~~~~~ 241 (337)
T 1pby_B 202 --------------------------------------FYTARKDIDPADPT-AYRTGLLTMDLETGEMA-MREVRIMDV 241 (337)
T ss_dssp --------------------------------------EEEEBTTSCTTSGG-GEEEEEEEEETTTCCEE-EEEEEECSS
T ss_pred --------------------------------------eecccccccccccc-ccccceEEEeCCCCCce-EeecCCCCC
Confidence 00000000000000 11126899999988764 444556667
Q ss_pred ceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceee
Q 007229 496 AITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRIT 575 (612)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 575 (612)
.+.+++|+||+++++++ ++.|++||+.+++.+.. +. ....+.+++|+|||++|++++.++.|++||+.+ + +.+.
T Consensus 242 ~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~-~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~-~-~~~~ 315 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR-VP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET-L-EKKG 315 (337)
T ss_dssp CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE-EE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT-C-CEEE
T ss_pred ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce-ec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcC-C-cEEE
Confidence 88899999999999988 78999999999887633 33 335678999999999999999999999999998 5 5555
Q ss_pred eeccc
Q 007229 576 IKNAH 580 (612)
Q Consensus 576 ~~~~h 580 (612)
.+..+
T Consensus 316 ~~~~~ 320 (337)
T 1pby_B 316 QVDLP 320 (337)
T ss_dssp EEECG
T ss_pred EEEcC
Confidence 55444
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-25 Score=224.62 Aligned_cols=346 Identities=11% Similarity=0.052 Sum_probs=224.9
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCC---ceEEEEECCCCCEEEEe
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGY---PVTVARYSPNGEWIASA 77 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~las~ 77 (612)
|..++++.++..... ..-..++|+|||++++.+.++.|++||+.+++....+.+|.. .|.+++|||||++||++
T Consensus 1 ~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 1 MRALTLKDILNGTFS---YKTFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CBCCCHHHHHHTTTC---CCCCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CCcccHHHHhcCccc---CCCCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEE
Confidence 445666666655421 223478999999877777789999999999998887776654 49999999999999998
Q ss_pred eC---------cCeEEEeecCCCceee-eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee-ccC
Q 007229 78 DV---------SGSVRIWGTHNGFVLK-NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-DGH 146 (612)
Q Consensus 78 ~~---------d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~ 146 (612)
+. ++.|++||+.+++.+. ..+ ...+..++|||||++|+++.++. +.+|..++++..... .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~~~~----i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVYQNN----IYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEETTE----EEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEECCe----EEEEeCCCCCcEEEecCCC
Confidence 76 7899999999987310 122 35688999999999999987542 444444456554332 233
Q ss_pred CceE-----------------EEEEEcCCCCEEEEEeecCC----------------------------------eEEEE
Q 007229 147 SRRV-----------------LSCEFKPTRPFRIATCGEDF----------------------------------LVNFY 175 (612)
Q Consensus 147 ~~~v-----------------~~~~~~~~~~~~l~~~~~d~----------------------------------~i~~w 175 (612)
...+ .+++|+|||++ |++++.|. .|++|
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 3322 48999999995 77766542 78999
Q ss_pred eCCCCeee--------ecccccccceEEEEECCCCCeEEEEEcCC----cEEEEe----cCCCCeeeeee-ccCCccccE
Q 007229 176 EGPPFKFK--------LSHREHSNFVNCIRFSPDGSKLISVSSDR----KGLIYD----GKSGEKIGEFS-SEDGHHGSI 238 (612)
Q Consensus 176 d~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd----~~~~~~~~~~~-~~~~~~~~v 238 (612)
|+.+++.. ..+.+|...+..++|+||++++++....+ .|.+|| +.+++....+. ....+...+
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 99988753 22446888899999999987776644332 488899 77776554431 002455555
Q ss_pred E-----EEEEecCCCEEEE--EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC-----C
Q 007229 239 Y-----AVSWSPDGKKVLT--VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG-----G 306 (612)
Q Consensus 239 ~-----~i~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 306 (612)
. .+.|+|||+.++. ...+|...+|-.+. ..++ ...+.... ..... + .. ++++.++..+.+ +
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~--~~~~-~~~lt~~~-~~v~~-~-~~-~d~~~i~~~~~~~~~~~~ 382 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD--TVEN-AIQITSGK-WEAIN-I-FR-VTQDSLFYSSNEFEEYPG 382 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS--CSTT-CEECSCSS-SCEEE-E-EE-ECSSEEEEEESCGGGCTT
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEEC--CCCc-eEecccCc-eEEEE-E-EE-EeCCEEEEEEecCCCCCc
Confidence 5 7899999996654 44566544444321 3333 22222211 11111 1 11 266667666654 7
Q ss_pred EEEEEEcCCCCC--Cceeec----CcccceeEEEEEecCCcEEEEEecC--CcEEEEEcCCceeee
Q 007229 307 IISIFSASNLDK--APLSFS----GHVKNVSTLTALKISQQTILSSSYD--GAIIKWIRGVGYSSK 364 (612)
Q Consensus 307 ~i~~~~~~~~~~--~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~ 364 (612)
...+|.+..... ....+. +|...+..+.|++....++++++.. ..+.+||+.+++...
T Consensus 383 ~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~ 448 (719)
T 1z68_A 383 RRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIK 448 (719)
T ss_dssp CBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEE
T ss_pred eEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEE
Confidence 788887654211 122222 3566777888885434555555544 468899987776543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-23 Score=191.00 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=168.1
Q ss_pred CCCceEEEEECCCCCEEEEeeC-------cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEE
Q 007229 58 HGYPVTVARYSPNGEWIASADV-------SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVR 130 (612)
Q Consensus 58 h~~~v~~~~~s~d~~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~ 130 (612)
....+..++|+|+|++|++++. ++.|.+||..+++. ...+.. ...+..++|+|+|++++++..... .+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~--~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNS--AVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTT--EEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCC--EEE
Confidence 4457889999999999888763 56899999999874 334433 456889999999998877766543 466
Q ss_pred EEEecCCceeeeeccCCc---------eEEEEEEcCCCCEEEEEe-ecCCeEEEEeCCCCeeeecccccccceEEEEECC
Q 007229 131 AFMWDSGTTVGDFDGHSR---------RVLSCEFKPTRPFRIATC-GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200 (612)
Q Consensus 131 i~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 200 (612)
+|+.++++.+..+..+.. .+.+++|+|+++++++++ +.++.|.+||..+++....+..+...+.+++|+|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC
Confidence 777778888888776543 278999999999655554 3588999999999999888875666789999999
Q ss_pred CCCeEEEEEcCCcEEEEecCCCCeeeeeecc-CCccccEEEEEEecCCCEEEEEeCC-CcEEEEEeecCCCCCeeEeeee
Q 007229 201 DGSKLISVSSDRKGLIYDGKSGEKIGEFSSE-DGHHGSIYAVSWSPDGKKVLTVSAD-KSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 201 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~ 278 (612)
++++|++++.++.+.+||+.+++....+... .++...+..++|+|+++++++++.+ +.|.+||+ .+++.+..+.
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~----~~~~~~~~~~ 270 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT----RNGNILAKVA 270 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET----TTCCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC----CCCcEEEEEE
Confidence 9999999999999999999999988777431 1245678899999999987777654 89999999 7777665544
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-24 Score=197.55 Aligned_cols=277 Identities=14% Similarity=0.076 Sum_probs=190.1
Q ss_pred EEEEeecCCeEEEEeCCCCeeeeccccccc--ceEEEEECCCCCeEEEE-EcCCcEEEEecCCCCeeeeeeccC--Cccc
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSN--FVNCIRFSPDGSKLISV-SSDRKGLIYDGKSGEKIGEFSSED--GHHG 236 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~--~~~~ 236 (612)
++++++.++.|.+||..+++.+..+..... .+..++|+|++++++++ ..++.|.+||+.+++.+..+.... .+..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 589999999999999999988877653221 48899999999877554 457899999999999887763211 0123
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCC
Q 007229 237 SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
.+..++|+|+|++++++.... .. ..
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~-----~~----~~---------------------------------------------- 107 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPV-----RL----EL---------------------------------------------- 107 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEE-----EE----CS----------------------------------------------
T ss_pred cccceEECCCCCEEEEEeccc-----cc----cc----------------------------------------------
Confidence 567899999999888875110 00 00
Q ss_pred CCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEe
Q 007229 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 317 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
...- ..++.|.+||+.+++......
T Consensus 108 -----------------------~~~~---~~~~~i~v~d~~~~~~~~~~~----------------------------- 132 (337)
T 1pby_B 108 -----------------------THFE---VQPTRVALYDAETLSRRKAFE----------------------------- 132 (337)
T ss_dssp -----------------------SCEE---ECCCEEEEEETTTTEEEEEEE-----------------------------
T ss_pred -----------------------cccc---ccCceEEEEECCCCcEEEEEe-----------------------------
Confidence 0000 012333444433322111000
Q ss_pred cCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEE
Q 007229 397 LCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHI 476 (612)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i 476 (612)
....+.+++|+|++++|+++ ++.|++
T Consensus 133 ----------------------------------------------------~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 133 ----------------------------------------------------APRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ----------------------------------------------------CCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ----------------------------------------------------CCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 00124567899999988887 678999
Q ss_pred EEccCcccccceeecccc--CceEEEEEcCCCcEEEEEcCC-C-----------------------eEEEEecCCcceee
Q 007229 477 YSISGNTLTEEMVLEKHR--GAITVIQYSPDVSMFASADGN-R-----------------------EAIVWDRVSKEVKL 530 (612)
Q Consensus 477 ~d~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~d-~-----------------------~i~iwd~~~~~~~~ 530 (612)
||+.+++.. ..+..+. .++ .|+|+++.++..+.+ + .|.+||+.+++...
T Consensus 159 ~d~~~~~~~--~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 233 (337)
T 1pby_B 159 MDPEAGTLV--EDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233 (337)
T ss_dssp EETTTTEEE--EEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred EECCCCcEe--eeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence 999888763 3333222 333 789998877655433 2 47899999988753
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
..+..+...+.+++|+|||++|+++ ++.|++||+.+ + +.+..+.. ...+.+++|+ ++++|++++.|+.|++||+
T Consensus 234 ~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~-~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 234 REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK-N-ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT-T-EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC-C-cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 3344566678899999999999888 78999999987 5 55555543 3467899999 8888888899999999998
Q ss_pred ccC
Q 007229 610 ATE 612 (612)
Q Consensus 610 ~~~ 612 (612)
+++
T Consensus 309 ~~~ 311 (337)
T 1pby_B 309 ETL 311 (337)
T ss_dssp TTC
T ss_pred cCC
Confidence 753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-22 Score=185.30 Aligned_cols=185 Identities=9% Similarity=0.032 Sum_probs=124.3
Q ss_pred CcCeEEEeecC--CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc--eeeeeccCCceEEEEE
Q 007229 79 VSGSVRIWGTH--NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT--TVGDFDGHSRRVLSCE 154 (612)
Q Consensus 79 ~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~v~~~~ 154 (612)
.++.|.+|++. +++........+...+..++|+|||+ |++++..+....+.+|..++++ .+..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 35567777765 44433324455667888999999999 6666653222256777776655 4555566788889999
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCC-Ce--eeecccc---------cccceEEEEECCCCCeEEEEEcCCcEEEEecC-C
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPP-FK--FKLSHRE---------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK-S 221 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~-~~--~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~ 221 (612)
|+|++++++++...++.|.+|++.. +. .+..+.. +...+.+++|+|+|+++++...++.|.+|++. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 9999996444444789999999862 22 2222221 12348899999999955555568899999998 4
Q ss_pred CCeeeeeeccCCccccEEEEEEecCCCEEEEE-eCCCcEEEEEe
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWEI 264 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~~ 264 (612)
++..............+..++|+|||++++++ ..++.+.+|++
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 216 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKY 216 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 54332211111233467889999999976665 45788999998
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-23 Score=209.24 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=167.2
Q ss_pred eEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCc-----eEEEEECCCCCEEEEee
Q 007229 4 VHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYP-----VTVARYSPNGEWIASAD 78 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~-----v~~~~~s~d~~~las~~ 78 (612)
++++.++.... +....+++|+|||++++.+ ++.|.+||+.+++....+.+|... ...++|||||++||.++
T Consensus 5 ~tl~~~~~~~~---~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~ 80 (740)
T 4a5s_A 5 YTLTDYLKNTY---RLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEY 80 (740)
T ss_dssp CCHHHHHHTCS---CCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEE
T ss_pred eeHHHHhcCcc---cccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEE
Confidence 34455555433 4466789999999999887 999999999999988888888643 23478999999999998
Q ss_pred Cc---------CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-eccCCc
Q 007229 79 VS---------GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-FDGHSR 148 (612)
Q Consensus 79 ~d---------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~ 148 (612)
.+ +.+.+||+.+++. ..+..+...+...+|||||+.||.+.+.. |.++..++++..+. ..++..
T Consensus 81 ~~~~~~r~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~~~SPdG~~la~~~~~~----i~~~~~~~~~~~~lt~~g~~~ 154 (740)
T 4a5s_A 81 NYVKQWRHSYTASYDIYDLNKRQL--ITEERIPNNTQWVTWSPVGHKLAYVWNND----IYVKIEPNLPSYRITWTGKED 154 (740)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEE--CCSSCCCTTEEEEEECSSTTCEEEEETTE----EEEESSTTSCCEECCSCCBTT
T ss_pred CCeeeEEEccceEEEEEECCCCcE--EEcccCCCcceeeEECCCCCEEEEEECCe----EEEEECCCCceEEEcCCCCcc
Confidence 76 5677999999873 24667788999999999999999997643 33444445554332 223333
Q ss_pred eE-----------------EEEEEcCCCCEEEEEeecC-CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 149 RV-----------------LSCEFKPTRPFRIATCGED-FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 149 ~v-----------------~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.+ ..+.|||||++ |+..+.| +.+.+|++...... ..+...+..+.+.+.|... .
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~yp~~G~~~----~ 226 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAVN----P 226 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSCC----C
T ss_pred ceecCcccccccchhcCCCcceEECCCCCE-EEEEEEcccCCceEEEEeecCC---CCCCCcceeecCCCCcCcC----C
Confidence 22 34899999996 6665544 55888875322111 0345567778888777532 2
Q ss_pred CCcEEEEecCC---CC--eeeeeecc---CCccccEEEEEEecCCCEEEEEeCC----CcEEEEEe
Q 007229 211 DRKGLIYDGKS---GE--KIGEFSSE---DGHHGSIYAVSWSPDGKKVLTVSAD----KSAKVWEI 264 (612)
Q Consensus 211 dg~i~vwd~~~---~~--~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~iw~~ 264 (612)
..+|++||+.+ ++ ....+... .++...+..++|+|||+.++..... ..|.+||+
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence 23689999998 73 22233111 0377789999999999976655332 25777776
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=214.93 Aligned_cols=249 Identities=13% Similarity=0.077 Sum_probs=181.9
Q ss_pred CceeEeeeeeccCCCCCCCceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCC-CceEEEEECCCCCEEEEe
Q 007229 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHG-YPVTVARYSPNGEWIASA 77 (612)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~las~ 77 (612)
||.++-.+++-.....+...|.+++|+|||++||+++ ++.+.||++++++..+ +..|. ..+..++|||| ++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~ 81 (582)
T 3o4h_A 4 IMPVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVR 81 (582)
T ss_dssp --CCCHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEE
T ss_pred EeeccHHHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEe
Confidence 5555555554333334456799999999999999986 7899999997776655 55555 79999999999 888877
Q ss_pred eC---cCeEEEeecCC--CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEE
Q 007229 78 DV---SGSVRIWGTHN--GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLS 152 (612)
Q Consensus 78 ~~---d~~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~ 152 (612)
+. +...+||.+.. ..... .+.. ...+...+|+|||+.++..+...+. ..+|+.++++.......+. .+
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~--~~l~d~~~g~~~~l~~~~~---~~ 154 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDR--VALYALDGGGLRELARLPG---FG 154 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSC--EEEEEEETTEEEEEEEESS---CE
T ss_pred ccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCC--ceEEEccCCcEEEeecCCC---ce
Confidence 65 45566765543 22122 2222 2234567889988754443322221 3477777776655444333 78
Q ss_pred EEEcCCCCEEEEEeecC----CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC--cEEEEecCCCCeee
Q 007229 153 CEFKPTRPFRIATCGED----FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR--KGLIYDGKSGEKIG 226 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~ 226 (612)
++|+|||++ +++++.+ +.|++||+.+++.. .+..|...+..++|||||++|+++..++ .|++||+.+++..
T Consensus 155 ~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~- 231 (582)
T 3o4h_A 155 FVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE- 231 (582)
T ss_dssp EEEEEETTE-EEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred EEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence 999999995 7777766 78999999988765 5678888999999999999999888888 8999999998877
Q ss_pred eeeccCCccccEEEEE--------EecCCCEEEEEeCCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVS--------WSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~--------~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+ ..+...+..++ |+|||..+++++.++.+++|++
T Consensus 232 ~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 232 DL---ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EC---CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred Ec---cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 44 25665666666 9999988899999999999986
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=209.95 Aligned_cols=272 Identities=14% Similarity=0.142 Sum_probs=196.0
Q ss_pred cccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCcc-ccEEEEEEecCCCEEEEEeC---CCcEEEEE
Q 007229 189 HSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHH-GSIYAVSWSPDGKKVLTVSA---DKSAKVWE 263 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~---dg~i~iw~ 263 (612)
+..+|.+++|+|||++|++++. ||+++||++.+++..... .+. ..+..++|+|| +.+++++. +...++|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt----~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN----REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC----SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee----cccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 3567999999999999999887 999999999766654433 444 68999999999 77777765 45677877
Q ss_pred eecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEE
Q 007229 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTI 343 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 343 (612)
++... .+... . +. ........++++.....+
T Consensus 95 ~~~~~-~g~~~-~----------------------------------------------l~-~~~~~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 95 VNTSR-PGEEQ-R----------------------------------------------LE-AVKPMRILSGVDTGEAVV 125 (582)
T ss_dssp EETTS-TTCCE-E----------------------------------------------CT-TSCSBEEEEEEECSSCEE
T ss_pred EeccC-CCccc-c----------------------------------------------cc-CCCCceeeeeCCCCCeEE
Confidence 73200 11111 0 00 011122345663324444
Q ss_pred EEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 344 LSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 344 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
++...++.+.+||+.+++...+..
T Consensus 126 ~~s~~~~~~~l~d~~~g~~~~l~~-------------------------------------------------------- 149 (582)
T 3o4h_A 126 FTGATEDRVALYALDGGGLRELAR-------------------------------------------------------- 149 (582)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEE--------------------------------------------------------
T ss_pred EEecCCCCceEEEccCCcEEEeec--------------------------------------------------------
Confidence 444445555588887665433211
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC----CeEEEEEccCcccccceeeccccCceEE
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN----GKLHIYSISGNTLTEEMVLEKHRGAITV 499 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~i~~ 499 (612)
.. ..+++|||||++|++++.+ +.|++||+.+++. ..+..|.+.+..
T Consensus 150 -------------------------~~--~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~~~~~~~~~ 199 (582)
T 3o4h_A 150 -------------------------LP--GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFDSGEGSFSS 199 (582)
T ss_dssp -------------------------ES--SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC---EEECCSSCEEEE
T ss_pred -------------------------CC--CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc---eEeecCCCcccc
Confidence 00 1568899999999988877 7899999998876 467788888999
Q ss_pred EEEcCCCcEEEEEcCCC--eEEEEecCCcceeeecccccccceeEEE--------ecCCCcEEEEeecCcEEEEEEccCC
Q 007229 500 IQYSPDVSMFASADGNR--EAIVWDRVSKEVKLNNMLFHTARINCLA--------WSPSSTMVATGSIDTCVIIYEIGKP 569 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~s~~~d~~i~iwd~~~~ 569 (612)
++|||||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.|+.+++|++
T Consensus 200 ~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--- 274 (582)
T 3o4h_A 200 ASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--- 274 (582)
T ss_dssp EEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET---
T ss_pred ceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE---
Confidence 99999999999888888 8999999998876 5666877888888 9999988999999999999999
Q ss_pred CcceeeeecccccCeeeEEEecCceEEEccCCCe---EEEEEe
Q 007229 570 ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDAC---IRVWRL 609 (612)
Q Consensus 570 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~---i~~w~~ 609 (612)
+ +... .+.+.|.+++|++++.+++++.+.. +.+|++
T Consensus 275 g-~~~~---~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 275 G-ERVE---APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp T-EEEC---CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred C-Ceec---cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 3 4433 2346788999997777888776644 555554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-21 Score=180.23 Aligned_cols=193 Identities=11% Similarity=0.063 Sum_probs=129.8
Q ss_pred CCCCEEEEee----CcCeEEEeecC--CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC-CeeeEEEEEecC--Cc-
Q 007229 69 PNGEWIASAD----VSGSVRIWGTH--NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK-GKSFVRAFMWDS--GT- 138 (612)
Q Consensus 69 ~d~~~las~~----~d~~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~--~~- 138 (612)
++..++..|+ .++.|.+|++. +++. ......+...+..++|+|||++|++++.+. ....+.+|.++. ++
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~-~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGES-LPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCE-EEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCE-EEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 3344555553 45689999774 4542 222222777888999999999999998851 111577788875 43
Q ss_pred -eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc--------------ccccceEEEEECCCCC
Q 007229 139 -TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR--------------EHSNFVNCIRFSPDGS 203 (612)
Q Consensus 139 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~ 203 (612)
.+.....+......+++ ++++++++...++.|.+|++.....+..+. .+...+.+++|+|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 34444556667788888 777656666678999999987544332211 1123468899999999
Q ss_pred eEEEEEc-CCcEEEEecCCCCe------e-ee---eeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEe
Q 007229 204 KLISVSS-DRKGLIYDGKSGEK------I-GE---FSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 204 ~l~~~~~-dg~i~vwd~~~~~~------~-~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~ 264 (612)
+|++++. ++.+.+|++..... + .. ..........+..++|+|||+++++++ .++.|.+|++
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 7776664 78999998875442 1 10 000114455678999999999888777 5889999998
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-22 Score=187.10 Aligned_cols=240 Identities=13% Similarity=0.083 Sum_probs=168.7
Q ss_pred CceeEEEEccCCCEEEEec---CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCC-C
Q 007229 19 GRGILISGNPKTDTILYCN---GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHN-G 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~-~ 91 (612)
..+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+|||++|++++ .++.|.+|++.. +
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 4667899999999443433 3799999998776 3444456788899999999999998887 789999999963 3
Q ss_pred ce-eeeeeee---------cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCcee--eeeccC-CceEEEEEEcC
Q 007229 92 FV-LKNEFKV---------LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTV--GDFDGH-SRRVLSCEFKP 157 (612)
Q Consensus 92 ~~-~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~--~~~~~~-~~~v~~~~~~~ 157 (612)
.. ....+.. +...+.+++|+|||+ ++++..... .+.+|..+ +++.. ..+..+ ...+..++|+|
T Consensus 120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD--KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT--EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC--EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 21 1111211 112488999999999 555544333 46777777 44432 222222 33678899999
Q ss_pred CCCEEEEEeecCCeEEEEeCCC--Ceee--ecccccc------cceEEEEECCCCCeEEE-EEcCCcEEEEecCCC---C
Q 007229 158 TRPFRIATCGEDFLVNFYEGPP--FKFK--LSHREHS------NFVNCIRFSPDGSKLIS-VSSDRKGLIYDGKSG---E 223 (612)
Q Consensus 158 ~~~~~l~~~~~d~~i~~wd~~~--~~~~--~~~~~~~------~~v~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~---~ 223 (612)
+|+++++++..++.|.+|++.. ++.. ..+.... ..+..++|+|||++|++ ...++.|.+|++... +
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9997677778899999999764 4432 2222222 45889999999998854 455899999998733 2
Q ss_pred eeeeeeccCCccccEEEEEEecCCCEEEEEeCC-CcEEEEEe
Q 007229 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KSAKVWEI 264 (612)
Q Consensus 224 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~iw~~ 264 (612)
.+..+ ..+...+..++|+|||++|++++.+ +.+.+|++
T Consensus 277 ~~~~~---~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 277 LIQQI---STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEE---ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EeEEE---ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 33333 2445567899999999998888765 89999977
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-23 Score=212.94 Aligned_cols=367 Identities=11% Similarity=-0.023 Sum_probs=228.3
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccccc---ceEEEEECCCCCeEEEEEc---------CCcEEEEec
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN---FVNCIRFSPDGSKLISVSS---------DRKGLIYDG 219 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~ 219 (612)
.++|+|++. ++++ +.|+.|++||+.+++....+.+|.. .+.+++|||||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg~-~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQE-YLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSE-EEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCe-EEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 679999995 3554 4699999999999988776665544 4899999999999998876 689999999
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEE
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHL 299 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (612)
.+++.+... .....+..++|+|||+.|+.+. ++.|++|++ .+++..+......
T Consensus 98 ~~g~~~~~~----~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~----~~g~~~~l~~~~~------------------ 150 (719)
T 1z68_A 98 SNGEFVRGN----ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQR----PGDPPFQITFNGR------------------ 150 (719)
T ss_dssp TTTEECCSS----CCCSSBCCEEECSSTTCEEEEE-TTEEEEESS----TTSCCEECCCCCB------------------
T ss_pred CCCccccce----ecCcccccceECCCCCEEEEEE-CCeEEEEeC----CCCCcEEEecCCC------------------
Confidence 988763212 1124578899999999999885 789999998 6655433211110
Q ss_pred EEEEcCCEEEEEEcCCCCCCceeecCcccc---------eeEEEEEecCCcEEEEEecC-CcEEEEEcCCceeeeeceec
Q 007229 300 ITVSLGGIISIFSASNLDKAPLSFSGHVKN---------VSTLTALKISQQTILSSSYD-GAIIKWIRGVGYSSKLEKKY 369 (612)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~ 369 (612)
....+.++... ...+.|++. ++.|++++.| +.+.+|.+..... .+
T Consensus 151 -------------------~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~-----~~ 205 (719)
T 1z68_A 151 -------------------ENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGD-----EQ 205 (719)
T ss_dssp -------------------TTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCS-----SS
T ss_pred -------------------cCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCC-----CC
Confidence 00111223222 246778732 7788877655 4455553321110 01
Q ss_pred ccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecc
Q 007229 370 DARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDL 449 (612)
Q Consensus 370 ~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (612)
...+..+.+... -.......+++||+.++.... ...... ......+
T Consensus 206 ~~~~~~~~yp~~--g~~~~~~~l~~~d~~~~~~~~--~~~~~~------------------------------~~~~~~~ 251 (719)
T 1z68_A 206 YPRTINIPYPKA--GAKNPVVRIFIIDTTYPAYVG--PQEVPV------------------------------PAMIASS 251 (719)
T ss_dssp SCEEEEEECCBT--TSCCCEEEEEEEESSCHHHHC--CEECCC------------------------------CHHHHTS
T ss_pred CccceeecCCCC--CCCCCeeEEEEEECCCCCccc--eeEccC------------------------------CccCCCC
Confidence 122222332100 001123378888876543200 000000 0000114
Q ss_pred cceEEEEEEccCCCeEEEEecC----CeEEEEE----ccCcccccceee----ccccCceE-----EEEEcCCCcEEEE-
Q 007229 450 GFTVTACAIAPDGSEAIVGGQN----GKLHIYS----ISGNTLTEEMVL----EKHRGAIT-----VIQYSPDVSMFAS- 511 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~~~~~d----g~v~i~d----~~~~~~~~~~~~----~~~~~~i~-----~~~~s~~~~~l~~- 511 (612)
...+.+++||||++++++.... ..|.+|| +.+++.. ..+ ..|...+. .++|+|||+.|+.
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP--KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC--GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE--EEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 4568899999998877774433 2488899 7777653 333 45666676 8899999996654
Q ss_pred -EcCCC--eEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCCCcc-eeeeec----
Q 007229 512 -ADGNR--EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKPASS-RITIKN---- 578 (612)
Q Consensus 512 -~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~-~~~~~~---- 578 (612)
...+| .|.+||+.+++. ..+..+...+..+.++ +++.|+..+.+ +..++|.+...+.. ....+.
T Consensus 330 ~~~~~g~~~l~~~~~~~~~~--~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~ 406 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVENA--IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLR 406 (719)
T ss_dssp EECTTSCEEEEEESSCSTTC--EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTT
T ss_pred EEccCCceEEEEEECCCCce--EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccC
Confidence 44444 677788877764 3344456667887777 78777666554 78999988752201 123332
Q ss_pred ccccCeeeEEEe-cCceEEE-ccCC--CeEEEEEecc
Q 007229 579 AHLGGVYGVAFM-DDFNVVS-SGED--ACIRVWRLAT 611 (612)
Q Consensus 579 ~h~~~v~~~~~~-~~~~l~s-~~~d--~~i~~w~~~~ 611 (612)
+|...+..+.|+ ++++++. ++.+ ..+.+|++++
T Consensus 407 ~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 407 KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp TTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence 366778899999 7777653 4333 4678888754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-22 Score=203.85 Aligned_cols=371 Identities=12% Similarity=0.046 Sum_probs=222.4
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCC-----eEEEEECCCCCEEEEEeCCCCeeeEEEEEe
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGR-----IDDLQWSPDGLRIVACGDGKGKSFVRAFMW 134 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~ 134 (612)
....+++|+|||++++++ |++|++||+.+++. ...+..|... ...++|||||++|++.+.+.. +|
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~-----~~-- 86 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK-----QW-- 86 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE-----CS--
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCce-EEEEechhhhhhcccccceEECCCCCEEEEEECCee-----eE--
Confidence 346689999999999997 89999999999984 3345555432 233667777777776654320 00
Q ss_pred cCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcE
Q 007229 135 DSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKG 214 (612)
Q Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 214 (612)
.| +..+.+.+||+.+++.. .+..|...+...+|||||+.||.+. ++.|
T Consensus 87 ----------r~--------------------~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i 134 (740)
T 4a5s_A 87 ----------RH--------------------SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDI 134 (740)
T ss_dssp ----------SS--------------------CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEE
T ss_pred ----------EE--------------------ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeE
Confidence 00 11255889999998865 4667788899999999999999874 7899
Q ss_pred EEEecCCCCeeeeeeccCCccccE-----------------EEEEEecCCCEEEEEeCCC-cEEEEEeecCCCCCeeEee
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSI-----------------YAVSWSPDGKKVLTVSADK-SAKVWEILEDGSGGRVIKT 276 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v-----------------~~i~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~ 276 (612)
++|++.+++...... .++...+ ..+.|||||++|+..+.|. .+.+|++.......
T Consensus 135 ~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~----- 207 (740)
T 4a5s_A 135 YVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES----- 207 (740)
T ss_dssp EEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-----
T ss_pred EEEECCCCceEEEcC--CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC-----
Confidence 999998887654321 1222222 3589999999999887654 48888872111100
Q ss_pred eeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEE
Q 007229 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
.+...+..+.+... +.. .....|++||
T Consensus 208 ------------------------------------------------~~~~~~~~~~yp~~-G~~----~~~~~l~v~d 234 (740)
T 4a5s_A 208 ------------------------------------------------LQYPKTVRVPYPKA-GAV----NPTVKFFVVN 234 (740)
T ss_dssp ------------------------------------------------CSSCEEEEEECCBT-TSC----CCEEEEEEEE
T ss_pred ------------------------------------------------CCCCcceeecCCCC-cCc----CCeeEEEEEE
Confidence 11122222333211 110 1112466677
Q ss_pred cCC---ce---eeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEE
Q 007229 357 RGV---GY---SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVS 430 (612)
Q Consensus 357 ~~~---~~---~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (612)
+.+ +. ...+...
T Consensus 235 ~~~~~~~~~~~~~~l~~~-------------------------------------------------------------- 252 (740)
T 4a5s_A 235 TDSLSSVTNATSIQITAP-------------------------------------------------------------- 252 (740)
T ss_dssp TTSCCSSSCCCEEEECCC--------------------------------------------------------------
T ss_pred CCCCCCCCcceEEEecCC--------------------------------------------------------------
Confidence 665 42 1111000
Q ss_pred eeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec----CCeEEEEEccCcc----cccceee--ccccCceE--
Q 007229 431 TESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ----NGKLHIYSISGNT----LTEEMVL--EKHRGAIT-- 498 (612)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~v~i~d~~~~~----~~~~~~~--~~~~~~i~-- 498 (612)
.....+...+..++|+|||+.++.... +..|++||+.+++ ......+ ..|...+.
T Consensus 253 -------------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~ 319 (740)
T 4a5s_A 253 -------------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF 319 (740)
T ss_dssp -------------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS
T ss_pred -------------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccC
Confidence 000012345788999999997766543 2379999999887 2222323 44555554
Q ss_pred ---EEEEcCCCcEEE-EEcC-C--CeEEEEecCCcceeeecccccccceeEEEecCCCcEEE-Eeec----CcEEEEEEc
Q 007229 499 ---VIQYSPDVSMFA-SADG-N--REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVA-TGSI----DTCVIIYEI 566 (612)
Q Consensus 499 ---~~~~s~~~~~l~-~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~~~----d~~i~iwd~ 566 (612)
..+|+|||+.|+ ..+. + ..|++||+.+++.. . +......+..+.. +|++.|+ ++.. .+...||.+
T Consensus 320 ~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 320 RPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-F-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp SCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-E-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-e-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 789999999877 5543 3 56888999887664 3 3333445555442 3466554 4443 234555555
Q ss_pred cCCCcceeeeec----ccccCeeeEEEe-cCceEEEcc-C--CCeEEEEEec
Q 007229 567 GKPASSRITIKN----AHLGGVYGVAFM-DDFNVVSSG-E--DACIRVWRLA 610 (612)
Q Consensus 567 ~~~~~~~~~~~~----~h~~~v~~~~~~-~~~~l~s~~-~--d~~i~~w~~~ 610 (612)
...+......+. +....+....|+ ++++++... . -..+.+++.+
T Consensus 397 ~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 397 QLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp ETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred ECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 432212222333 234578889999 777755332 2 2355666554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-22 Score=187.11 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=175.5
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCC----------ceee-----EeccCCCceEEEEECCCCCEEE----Eee
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKP----------LHVE-----FYGEHGYPVTVARYSPNGEWIA----SAD 78 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~----------~~~~-----~~~~h~~~v~~~~~s~d~~~la----s~~ 78 (612)
...++.+++++++.++++++...+++|+.... .... ....|...|++++|+|+|++|| +++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 34688999999999999998555888875311 0010 1123667899999999999999 889
Q ss_pred CcCeEEEeecCCC--------ce--eeeeeeecCCCeEEEEECCC-CCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC
Q 007229 79 VSGSVRIWGTHNG--------FV--LKNEFKVLSGRIDDLQWSPD-GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS 147 (612)
Q Consensus 79 ~d~~i~iwd~~~~--------~~--~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 147 (612)
.|+.|+|||+.+. +. ....+.+|...|.+++|+|+ +.+|++++.++ .+++|+..++..+....+|.
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg---~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG---SIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS---CEEEEEESSSEEEEEEECGG
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC---eEEEEEcCCCcceeeccCCC
Confidence 9999999998765 11 13455679999999999998 78999999988 57888888887777778899
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEE-cCC------c
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVS-SDR------K 213 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~-~dg------~ 213 (612)
..|.+++|+|+++ .|++|+.||.|++||.+ ++....+.. |...|.+++|++++.++++.+ .+| .
T Consensus 193 ~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 193 VAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 9999999999999 59999999999999998 444444332 334899999999888775533 343 3
Q ss_pred EEEEecCCCCe-----eeeeecc----CCccccEEEEEEecCCCEEEEEeC-CCcEEEEEe
Q 007229 214 GLIYDGKSGEK-----IGEFSSE----DGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEI 264 (612)
Q Consensus 214 i~vwd~~~~~~-----~~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~ 264 (612)
+++|++...+. ...+... .....+...+.+.++.+++++++. .+.|.++..
T Consensus 271 v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 271 VVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred eEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 88999986531 1111100 022223334455577777766654 455777765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=186.92 Aligned_cols=240 Identities=13% Similarity=0.058 Sum_probs=181.8
Q ss_pred EEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCC-CceEEEEECCCCCEEE-EeeCcCeEEEeecCCCceeeeeee
Q 007229 23 LISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHG-YPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
.+++++++++++++. ++.|.+||+.+++.+..+..+. ..+..++|+|||++++ +...++.|.+||+.+++.+. .+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~-~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE-EEE
Confidence 457888998888876 7999999999999888776443 2678999999998665 55578999999999887432 333
Q ss_pred e-c-----CCCeEEEEECCCCCEEEEEeCC-----------CCeeeEEEEEecCCce---eeeeccCCceEEEEEEcCCC
Q 007229 100 V-L-----SGRIDDLQWSPDGLRIVACGDG-----------KGKSFVRAFMWDSGTT---VGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 100 ~-~-----~~~i~~~~~s~~~~~l~~~~~~-----------~~~~~i~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~ 159 (612)
. + ...+..++|+|||++|++++.+ .. .+.+|+.++++. +..+. +...+.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP--RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG 159 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC--EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCC--eEEEEECCCccccceeeecc-CCCcccceeECCCC
Confidence 2 2 2347899999999999998854 12 466666666433 33333 33468899999999
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccc-------------------------------------------------
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHS------------------------------------------------- 190 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------------------------------------------- 190 (612)
+ +++ ++ +.|.+||..+++....+..+.
T Consensus 160 ~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 160 S-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp C-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred c-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 8 555 33 349999999887765543221
Q ss_pred -------------------cceEEEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE
Q 007229 191 -------------------NFVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 191 -------------------~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
..+..++|+| ++++++++ ++.|.+||+.+++.+..+. ....+.+++|+|++++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l 309 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL 309 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCE
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCCccceEECCCCCEE
Confidence 1345678889 99999887 8899999999998887773 33456789999999999
Q ss_pred EEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 251 LTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
++++.++.|.+||+ .+++.+..+...
T Consensus 310 ~~~~~~~~v~v~d~----~~~~~~~~~~~~ 335 (349)
T 1jmx_B 310 YLGGTFNDLAVFNP----DTLEKVKNIKLP 335 (349)
T ss_dssp EEESBSSEEEEEET----TTTEEEEEEECS
T ss_pred EEecCCCeEEEEec----cccceeeeeecC
Confidence 98888999999999 888888877654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-21 Score=181.84 Aligned_cols=217 Identities=16% Similarity=0.099 Sum_probs=162.6
Q ss_pred CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc----------eee----eeeeecCC
Q 007229 38 GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF----------VLK----NEFKVLSG 103 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~----------~~~----~~~~~~~~ 103 (612)
.+.+++|+.... .+...++.+++++++.++++++.++ ++||+..... .+. .....+..
T Consensus 22 ~~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 22 LKKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CCEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 356777764311 2345689999999999999999887 8998754210 000 01123566
Q ss_pred CeEEEEECCCCCEEEE----EeCCCCeeeEEEEEecCC--------c---eeeeeccCCceEEEEEEcCCCCEEEEEeec
Q 007229 104 RIDDLQWSPDGLRIVA----CGDGKGKSFVRAFMWDSG--------T---TVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~----~~~~~~~~~i~i~~~~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
.|.+++|+|+|++|++ ++.++ .+++|+.+++ + .+..+.+|...|.+++|+|++..++++++.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGS---IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEE---EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred cccEEEEcCCCCEEEEEEeccCCCc---eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 7999999999999994 44444 5777776644 1 245677899999999999984337999999
Q ss_pred CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC----CccccEEEEEEe
Q 007229 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED----GHHGSIYAVSWS 244 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~v~~i~~~ 244 (612)
||+|++||++++.......+|...|.+++|+|+|++|++|+.||.|++||++ ++....+.... .|...+.+++|+
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 9999999999987776677899999999999999999999999999999988 55555442211 234489999999
Q ss_pred cCCCEEEEEe-CCC------cEEEEEeec
Q 007229 245 PDGKKVLTVS-ADK------SAKVWEILE 266 (612)
Q Consensus 245 ~~~~~l~~~~-~dg------~i~iw~~~~ 266 (612)
+++.++++.+ .+| .+++|++..
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred cCceEEEEEccCCCccCCCCceEEEEecc
Confidence 9888775543 343 389999943
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-20 Score=173.72 Aligned_cols=298 Identities=13% Similarity=0.100 Sum_probs=194.4
Q ss_pred ccCCCEEEEec-----CCEEEEEeC--CCCceeeEeccCCCceEEEEECCCCCEEEEeeCc----CeEEEeecCC--Cce
Q 007229 27 NPKTDTILYCN-----GRSVLIRYL--DKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS----GSVRIWGTHN--GFV 93 (612)
Q Consensus 27 s~d~~~l~~~~-----~~~i~i~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d----~~i~iwd~~~--~~~ 93 (612)
.++..++++++ ++.|.+|.+ ++++.......+...+..++|+|||++|++++.+ +.|.+|++.. ++.
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 44555666653 468888866 5565543322277888899999999999998875 7999999876 331
Q ss_pred -eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee------c--------cCCceEEEEEEcCC
Q 007229 94 -LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF------D--------GHSRRVLSCEFKPT 158 (612)
Q Consensus 94 -~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~------~--------~~~~~v~~~~~~~~ 158 (612)
.......+......+++ ++++|+++..... .+.+|..+....+..+ . .+...+.+++|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGG--SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTT--EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCC--EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence 12223334567788888 8998888875543 4667777643332221 1 12334688999999
Q ss_pred CCEEEEEeecCCeEEEEeCCCCee------e-------ecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCe
Q 007229 159 RPFRIATCGEDFLVNFYEGPPFKF------K-------LSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEK 224 (612)
Q Consensus 159 ~~~~l~~~~~d~~i~~wd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~ 224 (612)
++++++++..++.|.+|++..... + .....+...+..++|+|||+++++++ .++.|.+|++.+++.
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 997667777789999998765431 1 11223445678999999999888877 589999999987754
Q ss_pred --eeeeeccCCccccEEEEEEecCCCEEEEEeCC--CcEEEEEeecCCCCCe--eEeeeeccCccccceeeeeeeccCCE
Q 007229 225 --IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD--KSAKVWEILEDGSGGR--VIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 225 --~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
+..+.....+......++|+|||++|+++..+ +.|.+|+++.. +++ .+..+
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~--~g~~~~~~~~--------------------- 302 (361)
T 3scy_A 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET--NGTLTKVGYQ--------------------- 302 (361)
T ss_dssp EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT--TCCEEEEEEE---------------------
T ss_pred EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC--CCcEEEeeEe---------------------
Confidence 22232222344567899999999998776654 88999998311 122 11111
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEe-cCCcEEEEEc--CCceeeeece-ecccceE
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSS-YDGAIIKWIR--GVGYSSKLEK-KYDARIK 374 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~--~~~~~~~~~~-~~~~~i~ 374 (612)
.. ...+..++|++. ++++++++ .++.|.+|++ .+++...... .+...+.
T Consensus 303 -------------------------~~-g~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 303 -------------------------LT-GIHPRNFIITPN-GKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp -------------------------EC-SSCCCEEEECTT-SCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred -------------------------cC-CCCCceEEECCC-CCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 11 234556777732 66666665 6788999654 4566555432 2445667
Q ss_pred EEEe
Q 007229 375 CLAA 378 (612)
Q Consensus 375 ~~~~ 378 (612)
|+.|
T Consensus 356 ~v~~ 359 (361)
T 3scy_A 356 CLKF 359 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=184.63 Aligned_cols=212 Identities=9% Similarity=-0.022 Sum_probs=154.3
Q ss_pred EEeCCCCceeeEeccCCCceEE-----EEECCCCCEEEEeeC-cC--eEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 43 IRYLDKPLHVEFYGEHGYPVTV-----ARYSPNGEWIASADV-SG--SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 43 i~~~~~~~~~~~~~~h~~~v~~-----~~~s~d~~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
.+|..++.....+..|...... .+|||||++||.++. ++ .|.+||+.+++ .......+...+..++|+|||
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-ATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-EEECCCSSCBCSSSCEECTTS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-eEEeeeCCCCCccceEEcCCC
Confidence 4577888888889888877666 899999999999887 66 48888998887 444445555556678899999
Q ss_pred CEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEE--EcCCCCEEEEE----------------------eecCC
Q 007229 115 LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCE--FKPTRPFRIAT----------------------CGEDF 170 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~----------------------~~~d~ 170 (612)
++|++++.+. .+.+++.++++....+..+...+.... ++|++.. ++. ...+.
T Consensus 93 ~~l~~~~~~~---~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 93 DALFYVKDGR---NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp SEEEEEETTT---EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred CEEEEEeCCC---eEEEEECCCCcceeeeechhhcccccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcc
Confidence 9999999775 355666667777766666666664444 4899985 542 22447
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECC-CCCeEEEEEcC------CcEEEEecCCCCeeeeeeccCCcc--ccEEEE
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSP-DGSKLISVSSD------RKGLIYDGKSGEKIGEFSSEDGHH--GSIYAV 241 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~--~~v~~i 241 (612)
.|.+||+.+++.. .+..+...+..++|+| ||+.|+.+..+ ..|.++|...++..... .+. ..+..+
T Consensus 169 ~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~~~~~~~~~~ 243 (388)
T 3pe7_A 169 RLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK----THAEGESCTHE 243 (388)
T ss_dssp EEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC----CCCTTEEEEEE
T ss_pred eEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee----eCCCCcccccc
Confidence 8999999998654 3445667799999999 99999887763 37888887665544333 222 357889
Q ss_pred EEecCCCEEEEEeCC-C----cEEEEEe
Q 007229 242 SWSPDGKKVLTVSAD-K----SAKVWEI 264 (612)
Q Consensus 242 ~~~~~~~~l~~~~~d-g----~i~iw~~ 264 (612)
+|+|||+.|+..+.+ + .|.+||+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEec
Confidence 999999988665432 2 2777776
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=182.23 Aligned_cols=161 Identities=8% Similarity=0.011 Sum_probs=120.9
Q ss_pred EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC-ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec
Q 007229 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS-RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 185 (612)
.++++++++++++++.++ .+.+|+.++++.+..+..+. ..+..++|+|+++++++++..++.|.+||+.+++....
T Consensus 4 g~~~~~~~~~~v~~~~~~---~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPN---NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTT---EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCC---eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 456888888889888877 46677766888888776543 25788999999997677777899999999999988766
Q ss_pred cccc------ccceEEEEECCCCCeEEEEEcC------------CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 186 HREH------SNFVNCIRFSPDGSKLISVSSD------------RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 186 ~~~~------~~~v~~~~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
+..+ ...+..++|+|||++|++++.+ +.|.+||+.+++....+... .+...+.+++|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDG 159 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTS
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCC
Confidence 5532 2337889999999999998865 89999999886543322211 233468889999999
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
+ +++++ +.|.+||+ .+++....+.
T Consensus 160 ~-l~~~~--~~i~~~d~----~~~~~~~~~~ 183 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDV----KTGKYTVALP 183 (349)
T ss_dssp C-EEEES--SSEEEECT----TTCCEEEEEC
T ss_pred c-EEEcc--CcEEEEeC----CCCceecccc
Confidence 9 66554 34999998 6776665443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=185.15 Aligned_cols=164 Identities=12% Similarity=0.093 Sum_probs=120.4
Q ss_pred EeecCCCceeeeeeeecCCCeEE-----EEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcC
Q 007229 85 IWGTHNGFVLKNEFKVLSGRIDD-----LQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKP 157 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~ 157 (612)
.+|..++.. ...+..|...... .+|||||++|++++...+. ..+|.|+ +++......++...+..++|+|
T Consensus 14 ~~~~~~g~~-~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 14 YQDASTGAQ-VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EECTTTCCE-EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred EecCCCCcc-eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence 456666663 3456666665555 8999999999999874332 2455555 6776666666766666788999
Q ss_pred CCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEE--ECCCCCeEEEEE----------------------cCCc
Q 007229 158 TRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIR--FSPDGSKLISVS----------------------SDRK 213 (612)
Q Consensus 158 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~----------------------~dg~ 213 (612)
+++. |+.++.++.|++||+.+++.......+...+.... ++|++++++... .+..
T Consensus 91 dg~~-l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 91 DDDA-LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCE-EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 9994 88888889999999999987766665655554443 489999887432 3467
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCC
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSAD 256 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d 256 (612)
|.+||+.+++..... .+...+..++|+| ||+.|+....+
T Consensus 170 l~~~d~~~g~~~~l~----~~~~~~~~~~~sp~dg~~l~~~~~~ 209 (388)
T 3pe7_A 170 LMRVDLKTGESTVIL----QENQWLGHPIYRPYDDSTVAFCHEG 209 (388)
T ss_dssp EEEEETTTCCEEEEE----EESSCEEEEEEETTEEEEEEEEECS
T ss_pred EEEEECCCCceEEee----cCCccccccEECCCCCCEEEEEEec
Confidence 999999998766555 4566789999999 99988877653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-21 Score=180.22 Aligned_cols=243 Identities=9% Similarity=0.003 Sum_probs=171.0
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCC-CCceeeEeccC-CCceEEEEECCCCCE--EEEee-------------CcC
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLD-KPLHVEFYGEH-GYPVTVARYSPNGEW--IASAD-------------VSG 81 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~-~~~~~~~~~~h-~~~v~~~~~s~d~~~--las~~-------------~d~ 81 (612)
..+..++|+|||++|++++.+.|.+|++. +++........ .+.+.+++|+|||++ +++++ .++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 36789999999999988875599999997 77665433211 133667999999994 55654 689
Q ss_pred eEEEeecCC-Cceeeeeee----ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCcee--eeec--cCCceEE
Q 007229 82 SVRIWGTHN-GFVLKNEFK----VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTV--GDFD--GHSRRVL 151 (612)
Q Consensus 82 ~i~iwd~~~-~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~--~~~~--~~~~~v~ 151 (612)
.+.+|++.. ++ +...+. .+...+.+++|+|||++|+++..... .+.+|..+ +++.. ..+. .|...+.
T Consensus 120 ~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 120 YGNVFSVSETGK-LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN--KLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp EEEEEEECTTCC-EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred eEEEEccCCCCc-CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC--EEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 999999974 54 333333 24568999999999999887765433 47777777 66543 3333 3467799
Q ss_pred EEEEcCCCCEEEEEeecCCeEEEEeCC--CCeee------eccc----cccc------ceEEEE-ECCCCCeEEEEEcCC
Q 007229 152 SCEFKPTRPFRIATCGEDFLVNFYEGP--PFKFK------LSHR----EHSN------FVNCIR-FSPDGSKLISVSSDR 212 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~------~~~~----~~~~------~v~~~~-~s~~~~~l~~~~~dg 212 (612)
.++|+|+|++++++...++.|.+|++. +++.. ..+. +|.. .+..++ |+|||++|+++..+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999644444557899999754 45532 1222 2222 588999 999999988776533
Q ss_pred ------cEEEEecC-CCCeeeeeeccCCccccEEEEEEec---CCCEEEEEeCC-CcEEEEEe
Q 007229 213 ------KGLIYDGK-SGEKIGEFSSEDGHHGSIYAVSWSP---DGKKVLTVSAD-KSAKVWEI 264 (612)
Q Consensus 213 ------~i~vwd~~-~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~d-g~i~iw~~ 264 (612)
.|.+|++. +++..........+...+..++|+| ||++|++++.+ +.|.+|++
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 79999996 5654432110112344456789999 89999998864 89999998
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=186.10 Aligned_cols=181 Identities=10% Similarity=-0.062 Sum_probs=124.3
Q ss_pred EEEeCCCCceeeEeccCCCc-----eEEEEECCCCCEEEEeeCc---CeEEEeecCCCceeeeeeeecCCC-eEEEEECC
Q 007229 42 LIRYLDKPLHVEFYGEHGYP-----VTVARYSPNGEWIASADVS---GSVRIWGTHNGFVLKNEFKVLSGR-IDDLQWSP 112 (612)
Q Consensus 42 ~i~~~~~~~~~~~~~~h~~~-----v~~~~~s~d~~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~s~ 112 (612)
...|..+++.+..+..+... +.+++|||||++||..... ..|.+||+.+++. . .+..+... ...+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-~-~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-V-QLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-E-ECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-E-EeecCCCCccccceECC
Confidence 34578888877777766544 7889999999998877543 4688899988863 2 23333333 33478999
Q ss_pred CCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccc
Q 007229 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNF 192 (612)
Q Consensus 113 ~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 192 (612)
||++|+.++.+. .+.+++.++++.......+.. |+|+++ .++....+....+|.
T Consensus 91 dg~~l~~~~~~~---~l~~~d~~~~~~~~~~~~~~~------~~~~g~-~l~~~~~~~~~~~~~---------------- 144 (396)
T 3c5m_A 91 DERAFFYVKNEL---NLMKVDLETLEEQVIYTVDEE------WKGYGT-WVANSDCTKLVGIEI---------------- 144 (396)
T ss_dssp TSSEEEEEETTT---EEEEEETTTCCEEEEEECCTT------EEEEEE-EEECTTSSEEEEEEE----------------
T ss_pred CCCEEEEEEcCC---cEEEEECCCCCcEEEEecccc------cCCCCC-EEEeccCCccccccc----------------
Confidence 999999998876 344555556665554444443 666666 366666555555443
Q ss_pred eEEEEECCCCCeEEEE-----EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeC
Q 007229 193 VNCIRFSPDGSKLISV-----SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSA 255 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~ 255 (612)
..+.|+|+++.++.. ..+..|++||+.+++..... .+...+..+.|+| +++.|+..+.
T Consensus 145 -~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~----~~~~~~~~~~~sp~dg~~l~~~~~ 208 (396)
T 3c5m_A 145 -LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH----QDTAWLGHPIYRPFDDSTVGFCHE 208 (396)
T ss_dssp -EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE----EESSCEEEEEEETTEEEEEEEEEC
T ss_pred -cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec----cCCcccccceECCCCCCEEEEEec
Confidence 124578999887765 35678999999988766555 4566788999999 7887776654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-20 Score=170.53 Aligned_cols=294 Identities=12% Similarity=0.066 Sum_probs=189.2
Q ss_pred cCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCeeeeeeccCC---c
Q 007229 168 EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKIGEFSSEDG---H 234 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~---~ 234 (612)
.|+.|.+||..+++.+..+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+..+..... +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999988887766655 8999999999998863 57799999999998888743211 2
Q ss_pred cccEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEee-eeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 235 HGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKT-FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 235 ~~~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
......++|+|||++|+++.. ++.|.+||+ .+++.+.. +....
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~----~~~~~~~~~i~~~~------------------------------ 152 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDV----AKGDYVEDVTAAAG------------------------------ 152 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEET----TTTEEEEEEGGGTT------------------------------
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEEC----CCCcEEEEEecCCC------------------------------
Confidence 245668999999999998864 578999999 77777655 43221
Q ss_pred EcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC-ceeeee------ceecccceE-EEEeeccEE
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV-GYSSKL------EKKYDARIK-CLAAVEEVI 383 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~------~~~~~~~i~-~~~~~~~~l 383 (612)
...+.+.+.....+++.+.||.+.+|+... ++.... ......++. ....++..+
T Consensus 153 ------------------~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (361)
T 2oiz_A 153 ------------------CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKA 214 (361)
T ss_dssp ------------------EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEE
T ss_pred ------------------cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEE
Confidence 000111211124455555556665555543 221100 000111110 011234455
Q ss_pred EEecCCCeEEEEecCCCCCCccceeccCCC-cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 384 FTAGFDNKVWRVPLCEGECGDAEHIDVGSQ-PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
+..+.++.+.++|+................ .....+. ......++|+|++
T Consensus 215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------p~g~~~~a~~~dg 265 (361)
T 2oiz_A 215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV-----------------------------PGGYNLVGLHRAS 265 (361)
T ss_dssp EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE-----------------------------ECCSSCEEEETTT
T ss_pred EEEeCCCeEEEEEecCCCceecccccccCccccccccc-----------------------------cCCeeEEEEecCC
Confidence 556677788888875443210000000000 0000000 0111236899998
Q ss_pred CeEEEEec-----------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCc--cee
Q 007229 463 SEAIVGGQ-----------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSK--EVK 529 (612)
Q Consensus 463 ~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~ 529 (612)
+.++++.. .+.|.+||+.+++. ...+..+. +.+++|+|||++|++++. +.|.+||..++ +.+
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 88887654 34899999999887 56666665 899999999999998887 99999999999 776
Q ss_pred eecccccccceeEEEecCCCc
Q 007229 530 LNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 530 ~~~~~~~~~~i~~~~~s~~~~ 550 (612)
..+..+......++++|||+
T Consensus 341 -~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 341 -RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -EEETTSCSSEEEEEECCCSC
T ss_pred -EEeccCCCCcEEEEecCCCC
Confidence 44444667788999999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-19 Score=165.84 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=188.8
Q ss_pred eeccCCCCCCCceeEEEEccCCCEEEEecCC-------------------------EEEEEeCCCCceeeEec-cCCCce
Q 007229 9 TYACAPSTERGRGILISGNPKTDTILYCNGR-------------------------SVLIRYLDKPLHVEFYG-EHGYPV 62 (612)
Q Consensus 9 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~-------------------------~i~i~~~~~~~~~~~~~-~h~~~v 62 (612)
.||.. ...-+.+.+++++|+|+++++..++ .|.+||.++++.+..+. ++-...
T Consensus 15 ~wp~~-~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p 93 (329)
T 3fvz_A 15 DWPGV-YLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP 93 (329)
T ss_dssp TCGGG-GCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE
T ss_pred CCchh-ceecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc
Confidence 44443 3445789999999999999888744 69999999998877654 455688
Q ss_pred EEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee---------eecCCCeEEEEECC-CCCEEEEEe-CCCCeeeEEE
Q 007229 63 TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF---------KVLSGRIDDLQWSP-DGLRIVACG-DGKGKSFVRA 131 (612)
Q Consensus 63 ~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~i~~~~~s~-~~~~l~~~~-~~~~~~~i~i 131 (612)
..++++|+|+++++...++.|++||..........+ ..+......++|+| +++.+++.+ .+. +|
T Consensus 94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~-----~I 168 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS-----RI 168 (329)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC-----EE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC-----eE
Confidence 999999999999998889999999987653222223 23344689999999 777777765 344 35
Q ss_pred EEec-CCceeeeecc----------CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc--cccccceEEEEE
Q 007229 132 FMWD-SGTTVGDFDG----------HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRF 198 (612)
Q Consensus 132 ~~~~-~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~ 198 (612)
..|+ .++.+..+.. +......++++|++..++++...++.|++|+..+++.+..+ ..+...+.+++|
T Consensus 169 ~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 169 VQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp EEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred EEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence 5555 6666666642 22448999999995557888888999999999988887776 345677889999
Q ss_pred CC------CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 199 SP------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 199 s~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+| +|+..++...+..|++||..+++.+..+.....+...+..++++|+|..+++...++.|++|++
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 99 3332222333558999999999998887433356677899999999988888888999999998
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-19 Score=166.76 Aligned_cols=189 Identities=16% Similarity=0.043 Sum_probs=135.5
Q ss_pred cCCCEEEEec-------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeecCC
Q 007229 28 PKTDTILYCN-------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGTHN 90 (612)
Q Consensus 28 ~d~~~l~~~~-------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~~~ 90 (612)
++++++.+.. ++.|++||..+++.+..+..+..+ .++|+|||++|+++. .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3666666653 469999999999998888777665 999999999999886 367899999998
Q ss_pred Cceeeeeeeec------CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-eccCCceEEEEEEcCCCCEEE
Q 007229 91 GFVLKNEFKVL------SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-FDGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 91 ~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l 163 (612)
.+. ...+... ......++|+|||++|+++...... .+.+++.++++.+.. +..... ..+.+.|+++..+
T Consensus 91 ~~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~-~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 91 LTF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT-SIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSF 166 (361)
T ss_dssp CCE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE-EEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEE
T ss_pred CcE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC-eEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeE
Confidence 874 3344432 3457789999999999988754211 577888888888877 553222 2356778775578
Q ss_pred EEeecCCeEEEEeCCC-Ceee------ecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC
Q 007229 164 ATCGEDFLVNFYEGPP-FKFK------LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~-~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
++.+.||.+.+|+... ++.. ..+.....++ .+.+++++..++..+.++.+.++|+..+.
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 8899999999998765 4433 1122222222 33446778788888889999999987554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-19 Score=167.50 Aligned_cols=221 Identities=10% Similarity=0.066 Sum_probs=150.0
Q ss_pred CEEEEEeC--CCCceeeEec---cCCCceEEEEECCCCCEEEEeeCcCeEEEeecC-CCceeeeeeeec-CCCeEEEEEC
Q 007229 39 RSVLIRYL--DKPLHVEFYG---EHGYPVTVARYSPNGEWIASADVSGSVRIWGTH-NGFVLKNEFKVL-SGRIDDLQWS 111 (612)
Q Consensus 39 ~~i~i~~~--~~~~~~~~~~---~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~-~~~~~~~~~~~~-~~~i~~~~~s 111 (612)
+.|.+|++ ++++....-. ++...+..++|+|||++|++++.+ .|.+|++. +++ +....... .+....++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-~~~~~~~~~~g~~~~~~~s 91 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-IVHEASHPIGGHPRANDAD 91 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-EEEEEEEECCSSGGGGCTT
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-EEEeeEeecCCCCccEEEC
Confidence 46777654 4555432211 244578899999999999999887 99999997 665 32222211 1346679999
Q ss_pred CCCCE--EEEEe-------------CCCCeeeEEEEEec-CCceeeeec----cCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 112 PDGLR--IVACG-------------DGKGKSFVRAFMWD-SGTTVGDFD----GHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 112 ~~~~~--l~~~~-------------~~~~~~~i~i~~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
|||++ ++++. .++ .+.+|..+ .++....+. .+...+.+++|+|+|++++++...++.
T Consensus 92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g---~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 92 TNTRAIFLLAAKQPPYAVYANPFYKFAG---YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCC---EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCEEEEEEecCCcceeccceeecCCc---eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 99995 33432 233 46788777 465544443 256789999999999964444445789
Q ss_pred EEEEeCC-CCeeee--ccc--ccccceEEEEECCCCCeEEEEEc-CCcEEEEecC--CCCeee---eeeccC----Cccc
Q 007229 172 VNFYEGP-PFKFKL--SHR--EHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGK--SGEKIG---EFSSED----GHHG 236 (612)
Q Consensus 172 i~~wd~~-~~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~--~~~~~~---~~~~~~----~~~~ 236 (612)
|++|++. +++... .+. .|...+..++|+|||++|++++. ++.+.+|++. +++... .+.... ++..
T Consensus 169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 248 (365)
T 1jof_A 169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP 248 (365)
T ss_dssp EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence 9999998 666432 232 23567999999999999988775 6899999765 565432 221111 1222
Q ss_pred ------cEEEEE-EecCCCEEEEEeCCC------cEEEEEe
Q 007229 237 ------SIYAVS-WSPDGKKVLTVSADK------SAKVWEI 264 (612)
Q Consensus 237 ------~v~~i~-~~~~~~~l~~~~~dg------~i~iw~~ 264 (612)
.+..++ |+|||++|+++..+. .|.+|++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 588999 999999988776432 7999998
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-20 Score=188.55 Aligned_cols=204 Identities=13% Similarity=0.141 Sum_probs=151.3
Q ss_pred eeEeccCCCceEEEEECCCCCEEEEe--eCcCeEEEeecCCCceeeeeeeecCCCeE---------EEEEC--CCCCE-E
Q 007229 52 VEFYGEHGYPVTVARYSPNGEWIASA--DVSGSVRIWGTHNGFVLKNEFKVLSGRID---------DLQWS--PDGLR-I 117 (612)
Q Consensus 52 ~~~~~~h~~~v~~~~~s~d~~~las~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~---------~~~~s--~~~~~-l 117 (612)
...+.+|...+..++|++++.++++. +.++...||....+. ....+..+...+. ...|+ |||++ |
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-CcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 34467899999999999987777777 568899999965443 2345666666655 55565 99999 8
Q ss_pred EEEeCCCCeeeEEEEEecCC----ceeeeecc-----CCceEEEEEEcCCCCEEEEEeecC----------CeEEEEeCC
Q 007229 118 VACGDGKGKSFVRAFMWDSG----TTVGDFDG-----HSRRVLSCEFKPTRPFRIATCGED----------FLVNFYEGP 178 (612)
Q Consensus 118 ~~~~~~~~~~~i~i~~~~~~----~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~~wd~~ 178 (612)
+.+.... .+||.++.. .....+.. |...+..++|+|||+. |+.++.+ ..|++||+.
T Consensus 95 a~~~~~~----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 95 VFTHFGD----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp EEEBTTT----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EEEECCC----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEECC
Confidence 8776653 258888843 56666766 7788999999999995 7777666 589999998
Q ss_pred C------Ceeeeccc-ccccceEEEEECCCCCeEEEEEcCC--------cEEEEecC-CCC--eeeeeeccCCccccEEE
Q 007229 179 P------FKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDR--------KGLIYDGK-SGE--KIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 179 ~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~vwd~~-~~~--~~~~~~~~~~~~~~v~~ 240 (612)
+ ++.. .+. .+...+..++|||||++|+.++.++ .|++||+. +++ ....+. ..+...+..
T Consensus 170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~ 246 (662)
T 3azo_A 170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQ 246 (662)
T ss_dssp STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEE
T ss_pred CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcc
Confidence 8 5543 444 5567788999999999999887653 79999998 562 233331 245678999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEe
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
++|+|||++++++..++..++|.+
T Consensus 247 ~~~spdg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 247 AEWAPDGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp EEECTTSCEEEEECTTSSCEEEEE
T ss_pred eEECCCCeEEEEECCCCCeEEEEE
Confidence 999999997777777885555555
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-19 Score=181.50 Aligned_cols=241 Identities=9% Similarity=-0.049 Sum_probs=171.7
Q ss_pred CCCceeEEEEccCCCEEEEe--c-CCEEEEEeCCCCceeeEeccCCCceE---------EEEEC--CCCCE-EEEeeC-c
Q 007229 17 ERGRGILISGNPKTDTILYC--N-GRSVLIRYLDKPLHVEFYGEHGYPVT---------VARYS--PNGEW-IASADV-S 80 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~--~-~~~i~i~~~~~~~~~~~~~~h~~~v~---------~~~~s--~d~~~-las~~~-d 80 (612)
+...+..+++++++-+++.. . ++...||....+...+.+..|...+. ...|+ |||++ ||.++. +
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 45688999999887666666 3 57888998654555666777877776 66665 99998 776653 5
Q ss_pred CeEEEeecC--C-Cceeeeeeee-----cCCCeEEEEECCCCCEEEEEeCCCC-----eeeEEEEEec--CC-----cee
Q 007229 81 GSVRIWGTH--N-GFVLKNEFKV-----LSGRIDDLQWSPDGLRIVACGDGKG-----KSFVRAFMWD--SG-----TTV 140 (612)
Q Consensus 81 ~~i~iwd~~--~-~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~~~~-----~~~i~i~~~~--~~-----~~~ 140 (612)
..|.+|++. + ++ . ..+.. |...+..++|||||++|++++.+.. .....|+.|+ ++ ...
T Consensus 102 ~~l~~~~~~~~g~~~-~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 102 QRLYAFEPDAPGGAV-P-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp CCEEEECTTSTTCCC-C-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CeEEEEcCCCCCCCC-C-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 667777776 3 43 2 23444 5678899999999999999886510 1123455555 41 344
Q ss_pred eeec-cCCceEEEEEEcCCCCEEEEEeecC--------CeEEEEeCC-CC---eeeecccccccceEEEEECCCCCeEEE
Q 007229 141 GDFD-GHSRRVLSCEFKPTRPFRIATCGED--------FLVNFYEGP-PF---KFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 141 ~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~-~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
..+. .+...+..++|+|||++ |+..+.+ ..|++||+. ++ +......+|...+..++|+|||+++++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~ 258 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA 258 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSE-EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE
T ss_pred eEEEecCCCcccCceECCCCCE-EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE
Confidence 5566 67788899999999995 6665544 489999998 56 444444456788999999999997777
Q ss_pred EEcCC--cEEEEecCCCCeeeeeeccCCcccc--------EEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 208 VSSDR--KGLIYDGKSGEKIGEFSSEDGHHGS--------IYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 208 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~--------v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+..++ .|.+||+.+++...... .+... +..++|+|++++++++.. +.+++|.+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 259 TDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 77777 66677776776554431 12111 467899999999999988 99999966
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-17 Score=150.07 Aligned_cols=235 Identities=15% Similarity=0.180 Sum_probs=173.2
Q ss_pred CCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec------cCCCceEEEEE-CCCCCEEEEeeC-cCeEEEee
Q 007229 17 ERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG------EHGYPVTVARY-SPNGEWIASADV-SGSVRIWG 87 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~-s~d~~~las~~~-d~~i~iwd 87 (612)
+-..+.+++++|+|+++++.. ++.|.+||.+ ++.+..+. +|...+..+++ .++++++++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 445789999999999777765 7899999987 55555553 34567899999 578877777643 88999999
Q ss_pred cCCCceeeeeee-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeec--cCCceEEEEEEcCCCCEEE
Q 007229 88 THNGFVLKNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFD--GHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~l 163 (612)
.+++.+ ..+. .+...+..++++|+|+.+++...++ .|+.|+ .++.+..+. .+...+..++++|+++ ++
T Consensus 107 -~~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 178 (286)
T 1q7f_A 107 -QYGQFV-RKFGATILQHPRGVTVDNKGRIIVVECKVM-----RVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IF 178 (286)
T ss_dssp -TTSCEE-EEECTTTCSCEEEEEECTTSCEEEEETTTT-----EEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EE
T ss_pred -CCCcEE-EEecCccCCCceEEEEeCCCCEEEEECCCC-----EEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EE
Confidence 455533 2332 3345789999999998776655544 355555 456665554 4556789999999997 67
Q ss_pred EEeecCCeEEEEeCCCCeeeecccc--cccceEEEEECCCCCeEEEEEcCC-cEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLISVSSDR-KGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
++...++.|++||.. ++.+..+.. +...+..++++|+|+++++...++ .|.+||. +++.+..+... .....+.+
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~~~~~ 255 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-VKHAQCFD 255 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES-SCCSCEEE
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc-CCCCccee
Confidence 887889999999974 445545433 336789999999998888777775 9999995 56766666321 22335789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEe
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
++++|+|+++++ +.++.|++|++
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEc
Confidence 999999986666 67999999998
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-19 Score=168.58 Aligned_cols=240 Identities=11% Similarity=-0.016 Sum_probs=160.9
Q ss_pred eeEEEEccCCCEEEEecC----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 21 GILISGNPKTDTILYCNG----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
+..++|||||++|++..+ ..|.+||+.+++..+...++......+.|||||++|+.++.++.|.+||+.+++. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 677899999999998853 3899999999876654443333334488999999999999999999999998863 33
Q ss_pred eeeecCCCeEE-------------------EEECCCCCEEEEEeC--CCCeeeEEEEEecCCceeeeeccCCceEEEEEE
Q 007229 97 EFKVLSGRIDD-------------------LQWSPDGLRIVACGD--GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEF 155 (612)
Q Consensus 97 ~~~~~~~~i~~-------------------~~~s~~~~~l~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~ 155 (612)
....+...... ..|+|+++.++.... ......+.+++.++++... +..+...+..+.|
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV-IHQDTAWLGHPIY 195 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE-EEEESSCEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe-eccCCcccccceE
Confidence 33333332222 456788877765531 0111123344444555443 3356778899999
Q ss_pred cC-CCCEEEEEeecC------CeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCC
Q 007229 156 KP-TRPFRIATCGED------FLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSG 222 (612)
Q Consensus 156 ~~-~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~ 222 (612)
+| ++.. ++..+.+ ..|.+||+..++........ ...+..++|+|||++|+.++.+ +.|++||+.++
T Consensus 196 sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 196 RPFDDST-VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ETTEEEE-EEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCE-EEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 99 7764 4444433 46889998766544333322 3358889999999988877654 44999999888
Q ss_pred CeeeeeeccCCccccEEEEEEec-CCCEEEEEe----------------CCCcEEEEEeecCCCCCee
Q 007229 223 EKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVS----------------ADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~----------------~dg~i~iw~~~~~~~~~~~ 273 (612)
+...... .. ... +.|+| ||+++++++ .++.|.+||+ .+++.
T Consensus 275 ~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~----~~~~~ 332 (396)
T 3c5m_A 275 ENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT----KAKSA 332 (396)
T ss_dssp CEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET----TTTBC
T ss_pred CeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec----ccCce
Confidence 7644331 11 122 88999 999888754 2467999998 55543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-16 Score=155.29 Aligned_cols=325 Identities=13% Similarity=0.065 Sum_probs=217.0
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC--CCCeeeeeeccCCcccc
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK--SGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~ 237 (612)
+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+. ....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~----~G~~ 241 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----IGSE 241 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----CCSE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----cCCC
Confidence 346888888999999999999988877533 356799999999999999999999999995 888887773 3445
Q ss_pred EEEEEEe----cCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 238 IYAVSWS----PDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 238 v~~i~~~----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
...++|+ |||++++++.. ++++.++|. .+.+.+..+.......
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~----~t~~~~~~i~~~~~~~---------------------------- 289 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG----ETLEPKKIQSTRGMTY---------------------------- 289 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEET----TTCCEEEEEECCEECT----------------------------
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEEC----CCCcEEEEEecccccc----------------------------
Confidence 6899999 69999888765 589999998 8888887765431000
Q ss_pred cCCCCCCceeecCccc-ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCe
Q 007229 313 ASNLDKAPLSFSGHVK-NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNK 391 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 391 (612)
.....|.. .+..+..++.....++....+|.|.++|.........
T Consensus 290 --------~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-------------------------- 335 (567)
T 1qks_A 290 --------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-------------------------- 335 (567)
T ss_dssp --------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE--------------------------
T ss_pred --------ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee--------------------------
Confidence 00000111 3445555533345555566667777777654321110
Q ss_pred EEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEe-c
Q 007229 392 VWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG-Q 470 (612)
Q Consensus 392 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 470 (612)
..+........+.|+|++++++++. .
T Consensus 336 -----------------------------------------------------~~i~~~~~~~d~~~~pdgr~~~va~~~ 362 (567)
T 1qks_A 336 -----------------------------------------------------TEISAERFLHDGGLDGSHRYFITAANA 362 (567)
T ss_dssp -----------------------------------------------------EEEECCSSEEEEEECTTSCEEEEEEGG
T ss_pred -----------------------------------------------------eeeeccccccCceECCCCCEEEEEeCC
Confidence 0011112356788999999987766 5
Q ss_pred CCeEEEEEccCcccccceee---ccccCceEEEEEcCCC-cEEEEEc-CCCeEEEEecCC-------cceeeeccccccc
Q 007229 471 NGKLHIYSISGNTLTEEMVL---EKHRGAITVIQYSPDV-SMFASAD-GNREAIVWDRVS-------KEVKLNNMLFHTA 538 (612)
Q Consensus 471 dg~v~i~d~~~~~~~~~~~~---~~~~~~i~~~~~s~~~-~~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~ 538 (612)
++.|.++|+.++++...... ..|.+.-..+ ++|++ ...++.. .++.|.++|..+ .+.+ ..+.....
T Consensus 363 sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv-~~i~~~g~ 440 (567)
T 1qks_A 363 RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL-DSFPALGG 440 (567)
T ss_dssp GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE-EEEECSCS
T ss_pred CCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE-EEEecCCC
Confidence 78999999999887433332 1243322222 68874 4445543 568999999987 3333 33332333
Q ss_pred ceeEEEecCCCcEEEEeec-------CcEEEEEEccCC-----Ccceeeeec--------ccccCeeeEEEe-cCceEEE
Q 007229 539 RINCLAWSPSSTMVATGSI-------DTCVIIYEIGKP-----ASSRITIKN--------AHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 539 ~i~~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~-----~~~~~~~~~--------~h~~~v~~~~~~-~~~~l~s 597 (612)
.-..+..+|++++|.+... .+.|.++|+.+. . ..+..+. .-...+..+.|+ +++++..
T Consensus 441 g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 519 (567)
T 1qks_A 441 GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD-PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF 519 (567)
T ss_dssp CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC-CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC-CCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence 3345788999999887652 358999999874 2 2223332 123578899999 8887655
Q ss_pred c--c---CCCeEEEEEecc
Q 007229 598 S--G---EDACIRVWRLAT 611 (612)
Q Consensus 598 ~--~---~d~~i~~w~~~~ 611 (612)
+ + .++.|.++|.++
T Consensus 520 s~~~~~~~~~~i~v~D~~t 538 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKT 538 (567)
T ss_dssp EEECCTTSCCEEEEEETTT
T ss_pred EeecCCCCCCcEEEEECCC
Confidence 4 2 479999999776
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-17 Score=154.71 Aligned_cols=259 Identities=16% Similarity=0.162 Sum_probs=169.1
Q ss_pred ceeEEEEccCCCEEEEec----------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---C--eEE
Q 007229 20 RGILISGNPKTDTILYCN----------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---G--SVR 84 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~--~i~ 84 (612)
.+...++ ||++|++.. .+.|.+||+++++... + ..+..++|||||++||.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 5677888 999999863 4689999999887654 4 568899999999999988754 2 488
Q ss_pred EeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC------------------------CeeeEEEEEecCCcee
Q 007229 85 IWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK------------------------GKSFVRAFMWDSGTTV 140 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~------------------------~~~~i~i~~~~~~~~~ 140 (612)
+||+.+++ .. .+..+.. +..++|+|||+.|+.++.+. ....+.+++.++++.+
T Consensus 89 ~~~~~~g~-~~-~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLS-SK-KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTE-EE-EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCc-eE-EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 88888876 33 3333344 99999999999999887430 0112334444466553
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCC-------eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC--
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDF-------LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD-- 211 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 211 (612)
..+.. . .+..++|+|++ +++++..+. ...+|.+.+++. ..+..+ ..+..+ +|||++|+.++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 55554 3 78899999999 466665432 334443335543 334344 555554 9999999887754
Q ss_pred ------CcEEEEecCCCCeeeeeeccCCccccEEE-EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccc
Q 007229 212 ------RKGLIYDGKSGEKIGEFSSEDGHHGSIYA-VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284 (612)
Q Consensus 212 ------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 284 (612)
..|.+|| +++..... ..+...+.. +.|+ ++ ++++++.++.+++| +. +++.......
T Consensus 238 ~~~~~~~~l~~~d--~~~~~~l~---~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~----~g~~~~~~~~----- 300 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GKEVMGIL---DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW----DGEIKPIAKG----- 300 (347)
T ss_dssp SCCCSSCEEEEEC--SSCEEESS---TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE----SSSEEEEECS-----
T ss_pred CCccccceEEEEC--CCceEecc---ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec----CCceEEEecC-----
Confidence 3677888 55544333 255677886 8999 88 88889999999999 84 3333222221
Q ss_pred cceeeeeeeccCCEEEEEEcCCEE-EEEEcC
Q 007229 285 VEDMLVGCLWQNDHLITVSLGGII-SIFSAS 314 (612)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 314 (612)
...+..+.+++..+++++.++.. .+|...
T Consensus 301 -~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 301 -RHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -SSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred -CCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 12334444444455555555543 566544
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-18 Score=156.96 Aligned_cols=224 Identities=11% Similarity=0.088 Sum_probs=163.0
Q ss_pred CceeEEEEccCCCEEEEecC----C--EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-------------
Q 007229 19 GRGILISGNPKTDTILYCNG----R--SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV------------- 79 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~----~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~------------- 79 (612)
..+..++|||||++||+... + .|.+|++.+++....... .. +..++|+|||+.|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 45778999999999999862 3 588889998877665443 34 999999999999998863
Q ss_pred --------------cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe---e-eEEEEEecCCceee
Q 007229 80 --------------SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK---S-FVRAFMWDSGTTVG 141 (612)
Q Consensus 80 --------------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~---~-~i~i~~~~~~~~~~ 141 (612)
...|.+||+.+++.+ ..+.. . .+..++|+||| .++++..+... . ...+|.++ .....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~-~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVI-EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEE-EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEE-eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceE
Confidence 257999999988631 23444 3 88899999999 66666543210 1 24677777 44444
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecC--------CeEEEEeCCCCeeeecccccccceEE-EEECCCCCeEEEEEcCC
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGED--------FLVNFYEGPPFKFKLSHREHSNFVNC-IRFSPDGSKLISVSSDR 212 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg 212 (612)
.+..+ ..+..+ +|+|++ ++..+.+ ..|.+|| +++......++...+.. +.|+ |+ ++++++.++
T Consensus 212 ~l~~~-~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 212 KMFEK-VSFYAV--DSDGER-ILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp EEEEE-ESEEEE--EECSSC-EEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred EeccC-cceeeE--CCCCCE-EEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence 55444 555544 999996 5544432 4788888 66655555667778886 9999 88 888999999
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcE-EEEEe
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSA-KVWEI 264 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i-~iw~~ 264 (612)
.+++| +.+++..... .+...+.+++|+| ..+++++.++.. .+|.+
T Consensus 284 ~~~l~-~~~g~~~~~~----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 284 SVNLY-IWDGEIKPIA----KGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEEE-EESSSEEEEE----CSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred cEEEE-EcCCceEEEe----cCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 99999 8866654444 4577899999999 677777777765 89988
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-16 Score=149.43 Aligned_cols=332 Identities=13% Similarity=0.061 Sum_probs=223.2
Q ss_pred EccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecC--CCceeeeeeeecC
Q 007229 26 GNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTH--NGFVLKNEFKVLS 102 (612)
Q Consensus 26 ~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~--~~~~~~~~~~~~~ 102 (612)
.+|.+.++++.. ++.|.++|..+++.+..+.. ...+..++|||||++|.+++.|+.|.+||+. +.+ +...+.. .
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-~v~~i~~-G 239 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-TVAEIKI-G 239 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-EEEEEEC-C
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-EeEEEec-C
Confidence 345444444444 68999999999999887763 3456799999999999999999999999996 665 3334443 3
Q ss_pred CCeEEEEEC----CCCCEEEEEeCCCCeeeEEEEEecCCceeeeecc----------CCc-eEEEEEEcCCCCEEEEEee
Q 007229 103 GRIDDLQWS----PDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDG----------HSR-RVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 103 ~~i~~~~~s----~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~~l~~~~ 167 (612)
.....++|+ |||++++++..... .+.+++..+.+.+..+.. |.. .+..+.++++++..++...
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~--~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPP--QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETT--EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCceeEEccccCCCCCEEEEEEccCC--eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 356899999 79999998887655 366777668888776642 222 6888999999887777778
Q ss_pred cCCeEEEEeCCCCeeeec-ccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeec-c-CCccccEEEEEE
Q 007229 168 EDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSS-E-DGHHGSIYAVSW 243 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~-~-~~~~~~v~~i~~ 243 (612)
.+|.|.++|....+.... ..........+.|+|++++++++. .++.|.++|+.+++....+.. . ..|.+.-..+ +
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~ 396 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-V 396 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-E
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-E
Confidence 889999999877543222 112334567889999999987766 478999999999988777643 1 1343222222 6
Q ss_pred ecCCCEEEEEe--CCCcEEEEEeecCCC---CCeeEeeeeccCccccceeeeeeeccCCEEEEEEc-------CCEEEEE
Q 007229 244 SPDGKKVLTVS--ADKSAKVWEILEDGS---GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL-------GGIISIF 311 (612)
Q Consensus 244 ~~~~~~l~~~~--~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~ 311 (612)
+|++..+.+.+ .++.|.++|...... ..+.++.+..... .........++..+.+... .+.|.++
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~---g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG---GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC---CCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 78755554433 468999999832110 1556666654321 1122233344667777663 4599999
Q ss_pred EcCCC-----CCCceeec--------CcccceeEEEEEecCCcEEEEEe-----cCCcEEEEEcCCceeeeece
Q 007229 312 SASNL-----DKAPLSFS--------GHVKNVSTLTALKISQQTILSSS-----YDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 312 ~~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~~wd~~~~~~~~~~~ 367 (612)
|+.+. ......+. .....+..+.|++. ++.+..+. .++.|.++|..+.+......
T Consensus 474 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 474 DIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD-GTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT-SSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC-CCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 98766 32222222 12346677777743 55554442 37999999999988765443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.2e-17 Score=147.64 Aligned_cols=244 Identities=14% Similarity=0.138 Sum_probs=173.0
Q ss_pred CCceEEEEECCCCCEEEEeeCc------------------------CeEEEeecCCCceeeeeeeecCCCeEEEEECCCC
Q 007229 59 GYPVTVARYSPNGEWIASADVS------------------------GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~ 114 (612)
-+.+.+++++|+|+++++.+.+ +.|.+||..+++.+...-..+-.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999999988777 4799999998874332222344578999999999
Q ss_pred CEEEEEeCCCCeeeEEEEEec-CCc--eeeee---------ccCCceEEEEEEcC-CCCEEEEEee-cCCeEEEEeCCCC
Q 007229 115 LRIVACGDGKGKSFVRAFMWD-SGT--TVGDF---------DGHSRRVLSCEFKP-TRPFRIATCG-EDFLVNFYEGPPF 180 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~-~~~--~~~~~---------~~~~~~v~~~~~~~-~~~~~l~~~~-~d~~i~~wd~~~~ 180 (612)
+.+++...+. +|..|+ .++ .+..+ .++......++|+| ++. ++++.+ .++.|++|+ .++
T Consensus 103 ~l~v~d~~~~-----~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 103 NYWVTDVALH-----QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp CEEEEETTTT-----EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC-TTS
T ss_pred CEEEEECCCC-----EEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCC
Confidence 9766665554 355555 233 45555 34556789999999 666 677776 689999999 566
Q ss_pred eeeecccc----------cccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 181 KFKLSHRE----------HSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 181 ~~~~~~~~----------~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
+.+..+.. +-.....++++|+ ++++++...++.|++||..+++.+..+... .+...+..++|+| +..
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g~~ 253 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-GFL 253 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-TEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-CEE
Confidence 66666532 2234899999998 666666667889999999889988877432 4567788999999 433
Q ss_pred EEEE-------eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 250 VLTV-------SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 250 l~~~-------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
+.+. ..+..+++|+. .+++.+..+...
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~----~~g~~~~~~~~~------------------------------------------ 287 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNF----SSGEIIDVFKPV------------------------------------------ 287 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEET----TTCCEEEEECCS------------------------------------------
T ss_pred EEeCCCEEeccCCCcEEEEEEc----CCCeEEEEEcCC------------------------------------------
Confidence 3332 23457888988 667666554311
Q ss_pred ecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 323 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
.++...+..+++.+. +.++++...++.|++|++..
T Consensus 288 -~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 288 -RKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -SSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEEE
T ss_pred -CCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCCc
Confidence 134455677777632 57777888888999988754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-13 Score=138.16 Aligned_cols=521 Identities=7% Similarity=0.018 Sum_probs=308.2
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccC-CC---ceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEH-GY---PVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h-~~---~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
...|.++...++|.+.+... +.+..||..+.+... +... .. .|.++...++|++.+... +.|..||..+++.
T Consensus 87 ~n~I~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~t~--~gl~~~~~~~~~~ 162 (795)
T 4a2l_A 87 NDISRIVKTDSQGRVWIGTR-DGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLISTP--EGLIMFDIKESKF 162 (795)
T ss_dssp CSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEEET--TEEEEEETTTTEE
T ss_pred ccceeEEEECCCCCEEEEeC-CchheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEEEC--CceEEEECCCCEE
Confidence 35799999999998665554 558899988765443 3222 11 188999999998766553 4588999877642
Q ss_pred eeeeeeec-CCC-eEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeee-ccCCceEEEEEEcCCCCEEEEEeec
Q 007229 94 LKNEFKVL-SGR-IDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGE 168 (612)
Q Consensus 94 ~~~~~~~~-~~~-i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~ 168 (612)
....... ... |.++...++++..+.....+ ++.++ +++..... ..+...|.++...+++. +..++.
T Consensus 163 -~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G------l~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lwigt~ 233 (795)
T 4a2l_A 163 -IDDSFSTAMHKTIASTLYRQGDQIYIGTSTDG------LYTYSITQKTFEKVIPILGTKQIQAILQQSPTR--IWVATE 233 (795)
T ss_dssp -ECSSSCHHHHTCCEEEEEEETTEEEEEESSSC------EEEEETTTCCEEECC----CCCEEEEEEEETTE--EEEEEB
T ss_pred -EeccCCCCCCcceEEEEECCCCCEEEEECCCC------EEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC--EEEEEC
Confidence 1111111 123 88888888887666433334 44454 33332211 12346788888888875 555555
Q ss_pred CCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec----cCCcccc
Q 007229 169 DFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS----EDGHHGS 237 (612)
Q Consensus 169 d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~ 237 (612)
++-+..||..+++....... ....|.++...++|.+. .|+.+ -|.+||..+++....... ..-....
T Consensus 234 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (795)
T 4a2l_A 234 GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRS 311 (795)
T ss_dssp SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSC
T ss_pred CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCc
Confidence 54588999887665432211 23569999999888744 45555 589999876654332210 0123467
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC--ccccceeeeeeecc-CCEEEEEEcCCEEEEEEcC
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST--SNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSAS 314 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 314 (612)
|.++...++|. |..|+.++-|..|+. ..... ..+.... .......+.++..+ ++.+.+|+.++-+..|+..
T Consensus 312 i~~i~~D~~g~-lWigt~~~Gl~~~~~----~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 312 VRSIFMDSQGG-MWLGTYFGGLNYYHP----IRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPI 385 (795)
T ss_dssp EEEEEECTTSC-EEEEESSSCEEEECG----GGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTT
T ss_pred EEEEEEeCCcC-EEEEECCCCeEEeCC----Ccccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCC
Confidence 99999998887 555667778888886 33322 2222111 11122345555544 6788899999889999865
Q ss_pred CCCCCceeec-------CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece----ecccceEEEEee-ccE
Q 007229 315 NLDKAPLSFS-------GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK----KYDARIKCLAAV-EEV 382 (612)
Q Consensus 315 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~i~~~~~~-~~~ 382 (612)
.......... -....|.++.... ++..+..|+.++-+..+|..+++...... .....|.++..+ .+.
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~ 464 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN 464 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC
Confidence 4321111100 1234566666553 24537778877889999988776554332 134567888773 455
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
+..++. +.+..++..+...... .....+ . ......|.++...++|
T Consensus 465 lwigt~-~Gl~~~~~~~~~~~~~---~~~~~~------------------------------~-~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 465 LWLGTL-SALVRFNPEQRSFTTI---EKEKDG------------------------------T-PVVSKQITTLFRDSHK 509 (795)
T ss_dssp EEEEES-SCEEEEETTTTEEEEC---CBCTTC------------------------------C-BCCCCCEEEEEECTTC
T ss_pred EEEEec-CceeEEeCCCCeEEEc---cccccc------------------------------c-ccCCceEEEEEECCCC
Confidence 666665 4577777654432100 000000 0 0012358889999988
Q ss_pred CeEEEEecCCeEEEEEccCcccccce----eeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee-cccc-c
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEM----VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN-NMLF-H 536 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~-~ 536 (612)
++.+.. . +-+..|+..+++. ... ........|.++...++|.+.+... . -+..||..+.+...- ...+ .
T Consensus 510 ~lWigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~ 584 (795)
T 4a2l_A 510 RLWIGG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLP 584 (795)
T ss_dssp CEEEEE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCS
T ss_pred CEEEEe-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCc
Confidence 866644 4 4588899877654 111 0112346799999999998766554 3 588899877654321 1111 1
Q ss_pred ccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc----Ce--eeEEEecCceEEEccCCCeEE
Q 007229 537 TARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG----GV--YGVAFMDDFNVVSSGEDACIR 605 (612)
Q Consensus 537 ~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~----~v--~~~~~~~~~~l~s~~~d~~i~ 605 (612)
...|.++...++|++.+++ .. -+..|+..+ ..+..+..+.+ .+ .++...++..|..|+.+|-++
T Consensus 585 ~~~i~~i~~d~~g~lWi~t-~~-Gl~~~~~~~---~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl~~ 654 (795)
T 4a2l_A 585 NNVVYGILEDSFGRLWLST-NR-GISCFNPET---EKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGITT 654 (795)
T ss_dssp CSCEEEEEECTTSCEEEEE-TT-EEEEEETTT---TEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEEEE
T ss_pred hhheEEEEECCCCCEEEEc-CC-ceEEEcCCC---CcEEEcCCcCCCccccCccCceeECCCCeEEEecCCceEE
Confidence 3468889998888866655 44 488888876 33444432222 22 234444455566677777443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-16 Score=145.01 Aligned_cols=234 Identities=11% Similarity=-0.003 Sum_probs=170.2
Q ss_pred CceeEEEEccCCC-EEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 19 GRGILISGNPKTD-TILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 19 ~~v~~~~~s~d~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
....+++|+|+|+ +++++. ++.|..||.+++ ...+..+...+.+++++|+|+++++...++.|.+||..+++. ..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-~~ 104 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW-ES 104 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-EE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-EE
Confidence 3567899999999 555554 789999999987 555677888899999999999988887778999999988763 22
Q ss_pred eeeec----CCCeEEEEECCCCCEEEEEeCCC------------CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCC
Q 007229 97 EFKVL----SGRIDDLQWSPDGLRIVACGDGK------------GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 97 ~~~~~----~~~i~~~~~s~~~~~l~~~~~~~------------~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (612)
..... ...+..++++|+|+.+++....+ ......||.++....+..+..+......++|+|+++
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~ 184 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGN 184 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSC
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCC
Confidence 22221 23567899999999888732100 000125888875455556666777889999999999
Q ss_pred EEEEEeecCCeEEEEeCC-CCee---eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc
Q 007229 161 FRIATCGEDFLVNFYEGP-PFKF---KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG 236 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 236 (612)
. +++.+.++.|.+|++. +++. ...+..+...+..++++++|++.++. ++.|.+||.+ ++.+..+. .+..
T Consensus 185 ~-lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~---~~~~ 257 (296)
T 3e5z_A 185 L-LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL---TPQT 257 (296)
T ss_dssp E-EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE---CSSC
T ss_pred E-EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE---CCCC
Confidence 6 5888888999999986 4443 22233345567789999999865554 7899999976 77777763 3444
Q ss_pred cEEEEEE-ecCCCEEEEEeCCCcEEEEEe
Q 007229 237 SIYAVSW-SPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 237 ~v~~i~~-~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+.+++| .|+++.|++++.++ +.-++.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~ 284 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTE-FWSIET 284 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTE-EEEEEC
T ss_pred -ceeEEEECCCCCEEEEEcCCe-EEEEEc
Confidence 889999 58888888887763 444444
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-17 Score=164.87 Aligned_cols=244 Identities=8% Similarity=-0.058 Sum_probs=172.6
Q ss_pred ceeEEEEccCCCEEEEec--CC----EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCe-----------
Q 007229 20 RGILISGNPKTDTILYCN--GR----SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS----------- 82 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~----------- 82 (612)
.+..++|||||++||++. +| .|++||+++++.......+ ..+..++|||||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 578999999999999986 22 8999999999877643322 23778999999999999887765
Q ss_pred -----EEEeecCCCce---eeeeeeecCCCeEEEEECCCCCEEEEEeCCCC--eeeEEEEEecC------Cc-eeeeecc
Q 007229 83 -----VRIWGTHNGFV---LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG--KSFVRAFMWDS------GT-TVGDFDG 145 (612)
Q Consensus 83 -----i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~--~~~i~i~~~~~------~~-~~~~~~~ 145 (612)
|.+|++.+++. +......|...+..+.|||||++|+..+.... ...+.+++.++ +. ....+..
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 99999988752 11111224556889999999999998875321 11344444444 33 4666776
Q ss_pred CCceEEEEEEcCCCCEEEEEeecC---CeEEEEeCCCCee--eeccccccc--ceEEEEECCCCCeEEEEEcCCc--EEE
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGED---FLVNFYEGPPFKF--KLSHREHSN--FVNCIRFSPDGSKLISVSSDRK--GLI 216 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~--~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~--i~v 216 (612)
+...+.. .|+|+|+.+++.+..+ +.|.+||+.++.. ...+..|.. .+..++|++++.++++...++. |.+
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 7666655 4889998655554433 4799999987642 233434433 6888999987778888888875 566
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC----CCcEEEEEeecCCCCCe
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA----DKSAKVWEILEDGSGGR 272 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~ 272 (612)
|++.+++....+. .+...+..+.++|+++.++.... .+++..||+ .+++
T Consensus 364 ~~~~~g~~~~~l~---~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~----~tg~ 416 (710)
T 2xdw_A 364 HDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL----TKEE 416 (710)
T ss_dssp EETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET----TSSS
T ss_pred EECCCCCEEEecC---CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC----CCCc
Confidence 7776787766662 45677889999999876664432 468999998 5554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-16 Score=139.25 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=112.9
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
.+..++++|+++++++...++.|++||...... .......+...+..++++|+++++++...++.|++||.... .+ .
T Consensus 122 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~-~ 198 (286)
T 1q7f_A 122 HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL-HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YL-R 198 (286)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EE-E
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE-EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EE-E
Confidence 467899999999888777789999999764332 11111234456899999999998888888999999998544 32 2
Q ss_pred ccc--ccccceeEEEecCCCcEEEEeecCc-EEEEEEccCCCcceeeeeccccc--CeeeEEEe-cCceEEEccCCCeEE
Q 007229 532 NML--FHTARINCLAWSPSSTMVATGSIDT-CVIIYEIGKPASSRITIKNAHLG--GVYGVAFM-DDFNVVSSGEDACIR 605 (612)
Q Consensus 532 ~~~--~~~~~i~~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~h~~--~v~~~~~~-~~~~l~s~~~d~~i~ 605 (612)
.+. ++...+..++++|+|+++++...++ .|++|+... +.+..+..+.. .+.+++++ +++.+++ +.|+.|+
T Consensus 199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~ 274 (286)
T 1q7f_A 199 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLY 274 (286)
T ss_dssp EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEE
T ss_pred EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEE
Confidence 232 2235788999999999888887776 999999653 55555554433 47789999 6766666 6799999
Q ss_pred EEEecc
Q 007229 606 VWRLAT 611 (612)
Q Consensus 606 ~w~~~~ 611 (612)
+|++..
T Consensus 275 v~~~~~ 280 (286)
T 1q7f_A 275 IYRYVQ 280 (286)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 999854
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-16 Score=158.00 Aligned_cols=232 Identities=10% Similarity=0.057 Sum_probs=157.0
Q ss_pred ccCCCEEEEec--C----CEEEEEeCCCCceeeEec------cCCCceEEEEECCCCCEEEEeeCcC-----eEEEeecC
Q 007229 27 NPKTDTILYCN--G----RSVLIRYLDKPLHVEFYG------EHGYPVTVARYSPNGEWIASADVSG-----SVRIWGTH 89 (612)
Q Consensus 27 s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~las~~~d~-----~i~iwd~~ 89 (612)
+|||+++++.. + +.+.+.+..+++....+. +|...+..++|||||++||.++.++ .|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 39999999876 2 255666665555443322 3555789999999999999876543 89999999
Q ss_pred CCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC-------------eeeEEEEEecCCc----eeeeeccCCceEEE
Q 007229 90 NGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG-------------KSFVRAFMWDSGT----TVGDFDGHSRRVLS 152 (612)
Q Consensus 90 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~-------------~~~i~i~~~~~~~----~~~~~~~~~~~v~~ 152 (612)
+++.+...+.. ..+..++|+|||+.|+.+..+.. ...+.+|...++. .+.....|...+..
T Consensus 160 tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 160 GAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCcccccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 99854333322 23678999999999999887653 1123444444443 23333446677889
Q ss_pred EEEcCCCCEEEEEeec----CCeEEEEeCCC------Ce-eeecccccccceEEEEECCCCCeEEEEEcC----CcEEEE
Q 007229 153 CEFKPTRPFRIATCGE----DFLVNFYEGPP------FK-FKLSHREHSNFVNCIRFSPDGSKLISVSSD----RKGLIY 217 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~----d~~i~~wd~~~------~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vw 217 (612)
+.|+|||++++++... +..|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+.. +.|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 9999999975544431 56899999876 43 34445556665655 488999988877653 359999
Q ss_pred ecCCCCe--eeeeeccCCcc--ccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 218 DGKSGEK--IGEFSSEDGHH--GSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 218 d~~~~~~--~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+.+++. ...+. .+. ..+..++|++++.++++...++..++|-+
T Consensus 317 d~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 317 DFTDPEESKWKVLV---PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (710)
T ss_dssp ETTSCCGGGCEEEE---CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred eCCCCCcccceecc---CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence 9987752 23331 332 36888999988888888888886555543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-12 Score=132.73 Aligned_cols=518 Identities=9% Similarity=0.042 Sum_probs=309.2
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEecc--------CCCceEEEEECCCCCEEEEeeCcCeEEEeecC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGE--------HGYPVTVARYSPNGEWIASADVSGSVRIWGTH 89 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~--------h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~ 89 (612)
...|.++.-.++|.. -.+..+-+..||-.+ .+.+.. ....|.++...++|.+.+.. .+ -+..||..
T Consensus 42 ~n~v~~I~qD~~G~l-WigT~~GL~ryDG~~---f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT-~~-Gl~~yd~~ 115 (795)
T 4a2l_A 42 QSTVFSIDQDKRGNM-WFATYDGVNKYDGYA---FTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGT-RD-GLSRYDEE 115 (795)
T ss_dssp SSCEEEEEECTTSCE-EEEETTEEEEECSSC---EEEECCCTTCTTSCSCSCEEEEEECTTSCEEEEE-SS-CEEEEETT
T ss_pred cceeEEEEEcCCCCE-EEeecCcCcccCCCc---eEEEeCCCCCCCcccccceeEEEECCCCCEEEEe-CC-chheeCCC
Confidence 357999999999964 455555566777432 333321 24579999999999866544 44 48999988
Q ss_pred CCceeeeeeeec-CC---CeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeecc-C-Cce-EEEEEEcCCCC
Q 007229 90 NGFVLKNEFKVL-SG---RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDG-H-SRR-VLSCEFKPTRP 160 (612)
Q Consensus 90 ~~~~~~~~~~~~-~~---~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~-~-~~~-v~~~~~~~~~~ 160 (612)
+.+.. .+... .. .|.++...++|...+... .+ ++.++ +++. ..+.. + ... |.++...+++.
T Consensus 116 ~~~f~--~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-~g------l~~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~~g~ 185 (795)
T 4a2l_A 116 KDIFQ--NFFYEKNGKHLQVNGIEEISPEQLLISTP-EG------LIMFDIKESKF-IDDSFSTAMHKTIASTLYRQGDQ 185 (795)
T ss_dssp TTEEE--EECCEETTEECCCCEEEEEETTEEEEEET-TE------EEEEETTTTEE-ECSSSCHHHHTCCEEEEEEETTE
T ss_pred CCeEE--eccccccCCCceEEEEEECCCCCEEEEEC-Cc------eEEEECCCCEE-EeccCCCCCCcceEEEEECCCCC
Confidence 76522 22211 11 188888888887666543 33 45554 3322 22211 1 122 88888888885
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecc-cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec----cCCcc
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSH-REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS----EDGHH 235 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~ 235 (612)
+..++.++.+..|+..+++..... ..+...|.++...+++. |..++.++.+..||..+++....... ..-..
T Consensus 186 --lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (795)
T 4a2l_A 186 --IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISS 262 (795)
T ss_dssp --EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSC
T ss_pred --EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCC
Confidence 555666555889998776654331 12346788888888776 44456555599999877654332210 00124
Q ss_pred ccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC---ccccceeeeeeecc-CCEEEEEEcCCEEEEE
Q 007229 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST---SNAVEDMLVGCLWQ-NDHLITVSLGGIISIF 311 (612)
Q Consensus 236 ~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~ 311 (612)
..|.++...++|.+.+ ++.+ -|.+|+. .+++.. .+.... .......+.++..+ .+.+.+|+.++-+..+
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~----~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~ 335 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHE----GTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYY 335 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESS-CEEEEET----TTTEEE-EECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-hhheEcC----CCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEe
Confidence 5799999998887544 4455 5888987 555433 222111 11122345555544 6788899998889998
Q ss_pred EcCCCCCCceee-----cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee--------cccceEEEEe
Q 007229 312 SASNLDKAPLSF-----SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK--------YDARIKCLAA 378 (612)
Q Consensus 312 ~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~~i~~~~~ 378 (612)
+........... .-....|.++.... ...+..|+.++-|..|+..++........ ....|.++..
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~--~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK--DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV 413 (795)
T ss_dssp CGGGGSSEEECCCTTSSSCSCSSEEEEEECT--TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred CCCcccceEEcCCCCCCCCCCCeeEEEEECC--CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence 854432111100 01234566666553 45566788888899999887655443211 2456888887
Q ss_pred e-ccE-EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 379 V-EEV-IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 379 ~-~~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
+ .+. +..++.++.+..++..++... ....... . .....|.++
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~~~---~~~~~~~--------------------------------~-l~~~~v~~i 457 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQVE---NFNQRNS--------------------------------Q-LVNENVYAI 457 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCCEE---EECTTTS--------------------------------C-CSCSCEEEE
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCcEE---EeecCCC--------------------------------C-cCCCeeEEE
Confidence 4 444 888888788888887765421 0000000 0 012358888
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceee----ccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee-
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVL----EKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN- 531 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~- 531 (612)
...++|++.+. +.+ .+.+|+..+++....... .-....|.++...++|++.+... +-+..||..+++....
T Consensus 458 ~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~ 533 (795)
T 4a2l_A 458 LPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQKAS 533 (795)
T ss_dssp EECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEEECC
T ss_pred EECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEEEec
Confidence 88888875554 444 488999887765322211 11236799999999998776554 4588898877654111
Q ss_pred ---cccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec---c-cccCeeeEEEe-cCceEEEccCCCe
Q 007229 532 ---NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN---A-HLGGVYGVAFM-DDFNVVSSGEDAC 603 (612)
Q Consensus 532 ---~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~-h~~~v~~~~~~-~~~~l~s~~~d~~ 603 (612)
........|.++...++|++.+.. ..| +..||..+ ..+..+. + ....|.++... ++...+++ ..|
T Consensus 534 ~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~~~d~~~---~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G- 606 (795)
T 4a2l_A 534 ILPVSNVTKLFTNCIYEASNGIIWVGT-REG-FYCFNEKD---KQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRG- 606 (795)
T ss_dssp CSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-EEEEETTT---TEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-
T ss_pred CCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-ceeECCCC---CcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCc-
Confidence 001134568999999999866544 345 88899876 2333322 1 12357777777 55554444 444
Q ss_pred EEEEEec
Q 007229 604 IRVWRLA 610 (612)
Q Consensus 604 i~~w~~~ 610 (612)
|..|+.+
T Consensus 607 l~~~~~~ 613 (795)
T 4a2l_A 607 ISCFNPE 613 (795)
T ss_dssp EEEEETT
T ss_pred eEEEcCC
Confidence 5566654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-15 Score=135.20 Aligned_cols=238 Identities=13% Similarity=0.027 Sum_probs=178.5
Q ss_pred CCCEEEEec-CCEEEEEeCCCCceeeEeccCC-CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec-CCCe
Q 007229 29 KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHG-YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL-SGRI 105 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i 105 (612)
.+++|++++ ++.|.+||.++|+.+-.+..+. ..+.+++++|+|++|++ .++.|..||. +++.+ ..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~-W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL-WNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE-EEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE-EEEcCCCCccc
Confidence 456777776 7999999999999998888776 57899999999999993 4778999999 77744 345543 3578
Q ss_pred EEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeeecc------CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCC
Q 007229 106 DDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDG------HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 178 (612)
.++.+.|||+.+++.+.+. .+++.++ +|+.+..+.. +......+++.++|+ ++++...++.|..||.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~----~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHP----STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTT----EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT
T ss_pred cccEECCCCCEEEEecCCC----CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC
Confidence 8999999999999887632 2466666 6777766642 223455667899999 58899999999999998
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCC---ccccEEEEEEecCCCEEEEEeC
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG---HHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
++.+.++... ..+.++...++|+.++++..++.|..+|.++|+.+.++..... .-..+..++..++|+.+++...
T Consensus 155 -G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 155 -GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp -SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred -CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEecc
Confidence 9988887654 4566778899999999888888999999999999988843211 1234788899999998877642
Q ss_pred C--------CcEEEEEeecCCCCCeeEeeeecc
Q 007229 256 D--------KSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 256 d--------g~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
. +..+++++. .+++.+-++...
T Consensus 233 g~~~~~~~~~~~~~~~~~---~~g~~~W~~~~~ 262 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEID---SEGKVVWQLNDK 262 (276)
T ss_dssp TTCTTGGGSCCCSEEEEC---TTSBEEEEECCT
T ss_pred CccccccccCCceEEEEC---CCCCEEEEecCc
Confidence 1 234566663 356666555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-15 Score=140.36 Aligned_cols=236 Identities=10% Similarity=0.003 Sum_probs=167.2
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc----CeEEEeecCCCce
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS----GSVRIWGTHNGFV 93 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d----~~i~iwd~~~~~~ 93 (612)
..+.+++|+|+|++++++. ++.|.+||.++++.......+...+.+++++|+|+++++...+ +.|.+||..+++.
T Consensus 45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence 3567899999999777765 7899999999888766555677889999999999988887666 6899999988763
Q ss_pred eeeeee--ecCCCeEEEEECCCCCEEEEEeCCC-CeeeEEEEEecC-CceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 94 LKNEFK--VLSGRIDDLQWSPDGLRIVACGDGK-GKSFVRAFMWDS-GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 94 ~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
...+. .+...+..++++|+|+.+++...+. ......++.++. +..+..+..+...+..++|+|+++.++++.+.+
T Consensus 125 -~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~ 203 (333)
T 2dg1_A 125 -QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203 (333)
T ss_dssp -EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred -EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCC
Confidence 21222 2345789999999998877665320 000135777773 223333433444578999999998656666778
Q ss_pred CeEEEEeCCC-Ceeee--------cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC---Ccccc
Q 007229 170 FLVNFYEGPP-FKFKL--------SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---GHHGS 237 (612)
Q Consensus 170 ~~i~~wd~~~-~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~ 237 (612)
+.|.+||..+ +.... .+.++ ..+..++++++|++.++...++.|.+||. +++.+..+.... ++...
T Consensus 204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~ 281 (333)
T 2dg1_A 204 NRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR 281 (333)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred CeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccC
Confidence 8999999863 33221 11222 46788999999997777777889999998 566666663211 11126
Q ss_pred EEEEEEecCCCEEEEEeCCC
Q 007229 238 IYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg 257 (612)
+.+++|+||++.|++++.++
T Consensus 282 ~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 282 STHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp CCEEEECTTSCEEEEEEECG
T ss_pred cceEEECCCCCEEEEEeCcc
Confidence 88999999987777666553
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=161.06 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=154.3
Q ss_pred ccCCCEEEEec--C----CEEEEEeCCCCceeeEec------cCCCceEEEEECCCCCEEE-----EeeCcCeEEEeecC
Q 007229 27 NPKTDTILYCN--G----RSVLIRYLDKPLHVEFYG------EHGYPVTVARYSPNGEWIA-----SADVSGSVRIWGTH 89 (612)
Q Consensus 27 s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~la-----s~~~d~~i~iwd~~ 89 (612)
+|||+++++.. + ..|.+.+...++....+. +|...+..++|||||++|| .|+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 58999999886 2 245555665665544433 4666899999999999999 44455789999999
Q ss_pred CCcee-eeeeeecCCCeEEEEECCCCCEEEEEeCCCC----------eeeEEEEEecCCc----eeeeeccCCceEEEEE
Q 007229 90 NGFVL-KNEFKVLSGRIDDLQWSPDGLRIVACGDGKG----------KSFVRAFMWDSGT----TVGDFDGHSRRVLSCE 154 (612)
Q Consensus 90 ~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~----------~~~i~i~~~~~~~----~~~~~~~~~~~v~~~~ 154 (612)
+++.+ ...+. ......++|+|||+.|+.++.+.. ...+.+|...++. .+.....|...+..+.
T Consensus 156 tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCSSCCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcCCcccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 98743 11111 111268999999999999887652 1124444444444 4444455667899999
Q ss_pred EcCCCCEEEEEeecCC----eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----CCcEEEEecCCCCe--
Q 007229 155 FKPTRPFRIATCGEDF----LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----DRKGLIYDGKSGEK-- 224 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-- 224 (612)
|+|||++ |+..+.++ .|.+|+..+++. ..+..+...+....+ ++|+ ++..+. ++.|.+||+.+++.
T Consensus 234 ~SpDG~~-l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 234 LSRDGKY-LFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp ECTTSCC-EEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred ECCCCCE-EEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 9999997 44444444 677777665543 334455556666666 6676 555443 57899999987753
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
...+. .......+..++|+ ++.++++...|+..++|.+
T Consensus 310 ~~~l~-~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 310 WKEIV-PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp CEEEE-CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CeEEe-cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 22221 11224568888888 7778888889999999887
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-16 Score=138.21 Aligned_cols=234 Identities=8% Similarity=-0.131 Sum_probs=165.8
Q ss_pred ceeEEEEccCCCEEE-Eec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 20 RGILISGNPKTDTIL-YCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~-~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
...+++++|+|++++ +.. ++.|.+||..+.........+...+.+++++++|+++++.. ++.|.+||..+... ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 788999999999666 423 68999999876654433334446788999999999777665 88999999887652 211
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee--eccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD--FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
.......+..+++.|+|+.+++...++ .|+.++.+..... .......+..++++|+++ ++++...++.|.+|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNN-----RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGT-----EEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCC-----EEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEE
Confidence 112335789999999998666655444 3555564433222 223334678899999998 67777778899999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
|............+...+.+++++++|.+.++...++.|.+|+.......... ..+...+.+++++++|+.+++...
T Consensus 177 ~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 177 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP---FTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC---CCSCSCEEEEEECTTCCEEEEEGG
T ss_pred ecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec---cCCCCCceeEEECCCCCEEEEECC
Confidence 98877655443334467899999999976666666889999998665433322 133357899999999998888888
Q ss_pred CCcEEEEEe
Q 007229 256 DKSAKVWEI 264 (612)
Q Consensus 256 dg~i~iw~~ 264 (612)
++.|+++++
T Consensus 254 ~~~v~~~~~ 262 (270)
T 1rwi_B 254 NDRVVKLTS 262 (270)
T ss_dssp GTEEEEECC
T ss_pred CCEEEEEcC
Confidence 999999998
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-15 Score=134.84 Aligned_cols=281 Identities=10% Similarity=0.036 Sum_probs=184.7
Q ss_pred cCCeEEEEeCCCCeeeeccc------ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEE
Q 007229 168 EDFLVNFYEGPPFKFKLSHR------EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV 241 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 241 (612)
.+++|.++|..+++....+. ........+.+. +++..++...++.|.+||..+++.+..+ ........+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i----~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI----TGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE----ECCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc----CCCCCCcEE
Confidence 38899999999998776542 122346777774 3444455555799999999999998888 344678899
Q ss_pred EEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 242 SWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 242 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
+++++++.+++...++.|.+||. .+++....+.....
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~----~t~~~~~~i~~g~~--------------------------------------- 126 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINP----KTYEITGYIECPDM--------------------------------------- 126 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEET----TTTEEEEEEECTTC---------------------------------------
T ss_pred EEeCCCeEEEEECCCCeEEEEEC----CCCeEEEEEEcCCc---------------------------------------
Confidence 99999854444447899999999 77777665543210
Q ss_pred eecCcccceeEEEEEecCCcEEEEEe--cCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCC
Q 007229 322 SFSGHVKNVSTLTALKISQQTILSSS--YDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCE 399 (612)
Q Consensus 322 ~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~ 399 (612)
.++......+++ + +..++.+. .++.|.++|..+++......
T Consensus 127 --~~~~~~p~~i~~-~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-------------------------------- 169 (328)
T 3dsm_A 127 --DMESGSTEQMVQ-Y--GKYVYVNCWSYQNRILKIDTETDKVVDELT-------------------------------- 169 (328)
T ss_dssp --CTTTCBCCCEEE-E--TTEEEEEECTTCCEEEEEETTTTEEEEEEE--------------------------------
T ss_pred --cccCCCcceEEE-E--CCEEEEEcCCCCCEEEEEECCCCeEEEEEE--------------------------------
Confidence 001112233444 2 44444443 37888888887765432211
Q ss_pred CCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC--------
Q 007229 400 GECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN-------- 471 (612)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------- 471 (612)
.......++++|+|+++++...+
T Consensus 170 -------------------------------------------------~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 170 -------------------------------------------------IGIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp -------------------------------------------------CSSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred -------------------------------------------------cCCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 01123467889999877776654
Q ss_pred --CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc-cccccceeEEEecC-
Q 007229 472 --GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM-LFHTARINCLAWSP- 547 (612)
Q Consensus 472 --g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~s~- 547 (612)
+.|.++|..++++.....+. .......++|+|++++|.++.. .|.+||..+++.....+ ..+......++++|
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred CCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence 78999999988763222221 1236899999999999888765 89999999887642222 21245688999999
Q ss_pred CCcEEEEe----ecCcEEEEEEccCCCcceeeeecccccCeeeEEE
Q 007229 548 SSTMVATG----SIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAF 589 (612)
Q Consensus 548 ~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 589 (612)
++.+.++. ..++.|.+||... +.+..+.. ......++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~g---~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQG---KLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTTC---CEEEEEEE-EESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCCC---CEEEEEEe-ccCcceEEE
Confidence 55555555 5788999999873 55555432 223445555
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-15 Score=139.28 Aligned_cols=283 Identities=11% Similarity=-0.017 Sum_probs=185.9
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
..+.+++|+|++..++... ++.+..| .++....+.++...+.+++|+|+|++++++..++.|.+||..+++ ....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEE
Confidence 3567889999988877654 6788888 345666677787888999999999988888889999999999886 3333
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec--cCCceEEEEEEcCCCCEEEEEeec-----
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD--GHSRRVLSCEFKPTRPFRIATCGE----- 168 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~----- 168 (612)
...+...+.+++|+|+|+.+++...+... .-.|+.|+ +++....+. .+...+..++++|++. ++++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~ 159 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKS-TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTN 159 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSS-CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTB
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCC-CceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccC
Confidence 33566789999999999887776554000 00245555 444332332 3456799999999998 4555543
Q ss_pred -CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEE-EcCCcEEEEecCC-CCeeeeee-----ccCCccccEEE
Q 007229 169 -DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV-SSDRKGLIYDGKS-GEKIGEFS-----SEDGHHGSIYA 240 (612)
Q Consensus 169 -d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~-~~~~~~~~-----~~~~~~~~v~~ 240 (612)
.+.|..+|..+++... +......+..++|+|+++.|+.+ +.++.|.+||+.+ +.....+. ...++ ..+..
T Consensus 160 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 237 (333)
T 2dg1_A 160 PLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDS 237 (333)
T ss_dssp CCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEE
T ss_pred CCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCc
Confidence 3567777766554433 22334457899999999866554 4578999999864 44332210 01112 46788
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcc-ccceeeeeeec--cCCEEEEEEcCC------EEEEE
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN-AVEDMLVGCLW--QNDHLITVSLGG------IISIF 311 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~------~i~~~ 311 (612)
++++++|+++++...++.|.+||. .++.+..+...... ........+.+ +++.+++++.++ .+..+
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~-----~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~ 312 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNK-----RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTV 312 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECT-----TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEE
T ss_pred eEECCCCCEEEEEcCCCEEEEECC-----CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEE
Confidence 999999998877777889999986 35555555443210 00002233333 345777666653 45555
Q ss_pred EcC
Q 007229 312 SAS 314 (612)
Q Consensus 312 ~~~ 314 (612)
+..
T Consensus 313 ~~~ 315 (333)
T 2dg1_A 313 NGF 315 (333)
T ss_dssp ECS
T ss_pred ecc
Confidence 544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-16 Score=156.37 Aligned_cols=145 Identities=9% Similarity=-0.044 Sum_probs=99.3
Q ss_pred ECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeee------ccCCceEEEEEEcCCCCEEEEE----eecCCeEEEEeC
Q 007229 110 WSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDF------DGHSRRVLSCEFKPTRPFRIAT----CGEDFLVNFYEG 177 (612)
Q Consensus 110 ~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~----~~~d~~i~~wd~ 177 (612)
.+|+|++++....+.......+|..+ .++....+ .+|...+..++|||||++++++ |+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 34889998887765532223466655 33322222 2466689999999999964443 334468999999
Q ss_pred CCCeeeecccccccce--EEEEECCCCCeEEEEEcCCc-------------EEEEecCCCCee--eeeeccCCccccEEE
Q 007229 178 PPFKFKLSHREHSNFV--NCIRFSPDGSKLISVSSDRK-------------GLIYDGKSGEKI--GEFSSEDGHHGSIYA 240 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~-------------i~vwd~~~~~~~--~~~~~~~~~~~~v~~ 240 (612)
.+++.+.. .+...+ ..++|+|||+.|+.++.|.. |++|++.+++.. ..+ ....+...+..
T Consensus 155 ~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-~~~~~~~~~~~ 231 (695)
T 2bkl_A 155 DSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH-ERTGDPTTFLQ 231 (695)
T ss_dssp TTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE-CCCCCTTCEEE
T ss_pred CCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE-ecCCCCEEEEE
Confidence 99986511 122222 68899999999999988776 999999887632 222 11245567889
Q ss_pred EEEecCCCEEEEEeCCC
Q 007229 241 VSWSPDGKKVLTVSADK 257 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg 257 (612)
+.|+|||++|+..+.++
T Consensus 232 ~~~SpDG~~l~~~~~~~ 248 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRG 248 (695)
T ss_dssp EEECTTSCCEEEEEEET
T ss_pred EEECCCCCEEEEEEeCC
Confidence 99999999998877655
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-13 Score=125.66 Aligned_cols=235 Identities=11% Similarity=-0.044 Sum_probs=169.1
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEe-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+.+++++|+|++.++.. ++.|.+||.. ++..... ..+...+.+++++++|++.++...++.|..||.. ++...
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 91 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKE 91 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEE
Confidence 35789999999999887776 6899999998 5544322 3356789999999999988887778899999986 33211
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceee-eeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVG-DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
..+......+..+++.++|+.+++...++ .++.++ +++... ....+...+..+++.+++. +.++...++.|.
T Consensus 92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~ 165 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGPNGDIWFTEMNGN-----RIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIG 165 (299)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTT-----EEEEECTTCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred EeCCCcCCCceeeEECCCCCEEEEecCCc-----eEEEECCCCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEE
Confidence 11222455789999999998777665444 355555 333322 2234556789999999997 577666778999
Q ss_pred EEeCCCCeeeec-ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 174 FYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 174 ~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
.||. +++.... +......+.++++.++|++.++...++.|.+||. +++... +.. ......+.+++++++|+..++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKI-PTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EEC-CCCCCCceeEEECCCCCEEEe
Confidence 9998 6655432 3334556889999999986666556789999998 666433 211 234567899999999986666
Q ss_pred EeCCCcEEEEEe
Q 007229 253 VSADKSAKVWEI 264 (612)
Q Consensus 253 ~~~dg~i~iw~~ 264 (612)
...++.|..|+.
T Consensus 242 ~~~~~~i~~~d~ 253 (299)
T 2z2n_A 242 EWGANKIGRLTS 253 (299)
T ss_dssp ETTTTEEEEEET
T ss_pred ccCCceEEEECC
Confidence 556788999986
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-15 Score=136.06 Aligned_cols=306 Identities=12% Similarity=0.039 Sum_probs=190.9
Q ss_pred EEEcCCCCEEEEEeec----CCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEEe
Q 007229 153 CEFKPTRPFRIATCGE----DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIYD 218 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd 218 (612)
....|+++.++++-.. ++.|.+.|..+++.+..+..-..+ . ++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 4567888865555443 689999999999999888755555 4 99999999998876 367899999
Q ss_pred cCCCCeeeeeeccCC----ccccEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 219 GKSGEKIGEFSSEDG----HHGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
..+++.+..+....+ .......++|+|||++++++.. ++.|.++|+ .+++.+.++..... ..
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~----~t~~vv~tI~v~g~-------~~- 183 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL----EGKAFKRMLDVPDC-------YH- 183 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET----TTTEEEEEEECCSE-------EE-
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC----CCCcEEEEEECCCc-------ce-
Confidence 999999988853211 1124557899999999988864 689999999 89998888754320 00
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC-ceeeeecee---
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV-GYSSKLEKK--- 368 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~--- 368 (612)
..+.....+++.+.||.+.+.++.. ++.......
T Consensus 184 ------------------------------------------~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~ 221 (386)
T 3sjl_D 184 ------------------------------------------IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 221 (386)
T ss_dssp ------------------------------------------EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred ------------------------------------------eecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec
Confidence 0111134444555555555555543 222110000
Q ss_pred -cccceE-EEEe--eccEEEEecCCCeEEEEecCCCCCCccceeccCCC-cceeeecCCCCcEEEEEeeccEEEeecccc
Q 007229 369 -YDARIK-CLAA--VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ-PLDLSLALSSPELALVSTESGVILLDSLKV 443 (612)
Q Consensus 369 -~~~~i~-~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (612)
...++. ...+ ....++..+.++++.+.|..+.............. .....+.
T Consensus 222 ~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~----------------------- 278 (386)
T 3sjl_D 222 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR----------------------- 278 (386)
T ss_dssp CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE-----------------------
T ss_pred cccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccccc-----------------------
Confidence 011111 1122 12333335557888888886654221111100000 0000011
Q ss_pred eeeecccceEEEEEEccCCCeEEEEec----------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCc-EEEEE
Q 007229 444 MSKIDLGFTVTACAIAPDGSEAIVGGQ----------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS-MFASA 512 (612)
Q Consensus 444 ~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~ 512 (612)
......++++|+++.+++... .+.|.++|+.+++......+. .++..|+++||++ +|++.
T Consensus 279 ------p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 279 ------PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp ------ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEE
T ss_pred ------CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEE
Confidence 112335777899998888653 247999999999874333332 3688999999997 66554
Q ss_pred -cCCCeEEEEecCCcceeeecccccccceeEEEecCC
Q 007229 513 -DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548 (612)
Q Consensus 513 -~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 548 (612)
..++.|.++|..+++.+.. +. ..+..+.+.+++|
T Consensus 350 n~~~~~VsViD~~t~k~~~~-i~-~~~~p~~l~~s~d 384 (386)
T 3sjl_D 350 STGDKTLYIHDAESGEELRS-VN-QLGHGPQVITTAD 384 (386)
T ss_dssp ETTTTEEEEEETTTCCEEEE-EC-CCCSSCCEEEECC
T ss_pred cCCCCeEEEEECCCCcEEEE-ec-CCCCCceeEECCc
Confidence 5589999999999998743 33 2344556677766
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-15 Score=136.96 Aligned_cols=266 Identities=14% Similarity=0.050 Sum_probs=170.1
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
+..+..+..+.....+++|+|+++.+++++..++.|..||..++ ...+..+...+.+++++|+|+++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 34445555666778899999999867888999999999999887 4556667778999999999997776666789999
Q ss_pred EecCCCCeeeeeeccCC-ccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc
Q 007229 217 YDGKSGEKIGEFSSEDG-HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (612)
||..+++.......... ....+..++++|+|+++++....|+...+.. .. .
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~------~~------~---------------- 146 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG------YG------G---------------- 146 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS------SC------C----------------
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc------cc------c----------------
Confidence 99988876543311111 1234567889999987776432222100000 00 0
Q ss_pred CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEE
Q 007229 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
.. . ...+.|..++.. +.....
T Consensus 147 ------------------------------~~------------~------~~~~~l~~~~~~-g~~~~~---------- 167 (296)
T 3e5z_A 147 ------------------------------EM------------E------LPGRWVFRLAPD-GTLSAP---------- 167 (296)
T ss_dssp ------------------------------CC------------C------SSSCEEEEECTT-SCEEEE----------
T ss_pred ------------------------------cc------------c------CCCcEEEEECCC-CCEEEe----------
Confidence 00 0 000111111111 000000
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
......+..
T Consensus 168 -----------------------------------------------------------------------~~~~~~~~g 176 (296)
T 3e5z_A 168 -----------------------------------------------------------------------IRDRVKPNG 176 (296)
T ss_dssp -----------------------------------------------------------------------ECCCSSEEE
T ss_pred -----------------------------------------------------------------------ecCCCCCcc
Confidence 000012567
Q ss_pred EEEccCCCeEEEEecCCeEEEEEcc-Cccc-ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSIS-GNTL-TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~-~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
++|+|+++.+++.+.++.|++|++. ++.+ .....+..+.+.+..++++++|+++++. ++.|.+||.. ++.+ ..+
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~-~~~ 252 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL-GRV 252 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE-EEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE-EEE
Confidence 8999999988777778899999986 4443 1122223355667889999999977766 7899999987 5444 344
Q ss_pred cccccceeEEEe-cCCCcEEEEeecCcEEEEEEccC
Q 007229 534 LFHTARINCLAW-SPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 534 ~~~~~~i~~~~~-s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..+.. +++++| +|+++.|++++.++ +.-++..+
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 44555 899999 58999898888764 44455554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-13 Score=123.89 Aligned_cols=284 Identities=12% Similarity=0.025 Sum_probs=188.7
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec-ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
+..+...+.++++.+++. +.++...++.|..||.. ++.... ...+...+.+++++++|++.++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 345567899999999998 56666667899999988 544322 23345679999999999877766667889999976
Q ss_pred CCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEE
Q 007229 222 GEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLIT 301 (612)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (612)
++. ..+... .....+..+++.++++++++...++.|..||. . ++..
T Consensus 87 g~~-~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~----~-g~~~--------------------------- 132 (299)
T 2z2n_A 87 GII-KEYTLP-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD----D-GKIR--------------------------- 132 (299)
T ss_dssp SCE-EEEECS-STTCCEEEEEECTTSCEEEEETTTTEEEEECT----T-CCEE---------------------------
T ss_pred CcE-EEEeCC-CcCCCceeeEECCCCCEEEEecCCceEEEECC----C-CCEE---------------------------
Confidence 432 223111 23456788888888876666555666666664 1 1000
Q ss_pred EEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeecc
Q 007229 302 VSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEE 381 (612)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~ 381 (612)
.+....
T Consensus 133 ----------------------------------------------------~~~~~~---------------------- 138 (299)
T 2z2n_A 133 ----------------------------------------------------EYELPN---------------------- 138 (299)
T ss_dssp ----------------------------------------------------EEECSS----------------------
T ss_pred ----------------------------------------------------EecCCC----------------------
Confidence 000000
Q ss_pred EEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccC
Q 007229 382 VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPD 461 (612)
Q Consensus 382 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 461 (612)
....+..++++++
T Consensus 139 -------------------------------------------------------------------~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 139 -------------------------------------------------------------------KGSYPSFITLGSD 151 (299)
T ss_dssp -------------------------------------------------------------------TTCCEEEEEECTT
T ss_pred -------------------------------------------------------------------CCCCCceEEEcCC
Confidence 0012567788888
Q ss_pred CCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccccee
Q 007229 462 GSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARIN 541 (612)
Q Consensus 462 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~ 541 (612)
++++++...++.|..||. +++... .....+...+..+++++++++.++...++.|.+||. +++........+...+.
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPH 228 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCce
Confidence 877776666788999998 555421 123334456889999999998888777889999999 66543222333456789
Q ss_pred EEEecCCCcEEEEeecCcEEEEEEccCCCcceeee-ecccccCeeeEEEecCceEEEccCCCeEEEEEecc
Q 007229 542 CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITI-KNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 542 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~~ 611 (612)
+++++++|+++++...++.|..||.. + ..... +..+...+.++++ ++..|..+...+.|..++.++
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~~--g-~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTSN--N-IIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIK 295 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEETT--T-EEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-
T ss_pred eEEECCCCCEEEeccCCceEEEECCC--C-ceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCc
Confidence 99999999977766677889999983 3 32222 3345567888888 555555554466777777764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-10 Score=118.84 Aligned_cols=560 Identities=11% Similarity=0.010 Sum_probs=319.8
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec-------cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG-------EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~-------~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~ 90 (612)
...|.++.-.++|. |-.+...-+..||-.+-+...... -....|.++...++|+.|-.++.++-+..||..+
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~GL~ryDG~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 96 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEGLNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYET 96 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSCEEEECSSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTT
T ss_pred cCEeEEEEECCCCC-EEEccCCcCccccCCceEEEEcCCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCC
Confidence 45899999999996 555554456667744311111100 0134699999999998344466665699999987
Q ss_pred Cceeeeeee------ecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEec--CCceeeeecc------CCceEEEEE
Q 007229 91 GFVLKNEFK------VLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDG------HSRRVLSCE 154 (612)
Q Consensus 91 ~~~~~~~~~------~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~------~~~~v~~~~ 154 (612)
.+....... .....|.++.... ++...+.....+ ++.++ +++ ...+.. ....|.++.
T Consensus 97 ~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~g------l~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~ 169 (781)
T 3v9f_A 97 QSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRG------IEYLDIATGK-FTHYNKSTVPALPSEQTWTAT 169 (781)
T ss_dssp TEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSC------EEEEETTTTE-EEEESTTTCTTCSCCCEEEEE
T ss_pred CeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCC------eeEEECCCCe-EEeeccCcccCCCccceEEEE
Confidence 653211001 0123688888887 776555332444 44444 333 223321 234688888
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc-------ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 227 (612)
..+++. +..++.++-+..||..+++...... -....|.++...+++.+.+ ++.+ -+.+||..+++....
T Consensus 170 ~d~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~ 245 (781)
T 3v9f_A 170 EAEDGK--LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNF 245 (781)
T ss_dssp EEETTE--EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-
T ss_pred ECCCCC--EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEE
Confidence 887875 5556666568899988765433211 1135689999888887554 5555 699999876654322
Q ss_pred eecc----CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeee-------cc--Cccccceeeeeeec
Q 007229 228 FSSE----DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFA-------SS--TSNAVEDMLVGCLW 294 (612)
Q Consensus 228 ~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~ 294 (612)
.... ......|.++...++|. |..++..+-|.+++. .......... .. ........+.++..
T Consensus 246 ~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~----~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 246 HNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL----QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp ----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET----TCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred EcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC----CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 1100 01245689999888886 445656466888887 4433221111 00 11112234455544
Q ss_pred c-CCEEEEEEcCCEEEEEEcCCCCCCceee--------cCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 295 Q-NDHLITVSLGGIISIFSASNLDKAPLSF--------SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 295 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
+ .+.+-+|+.++-|..++........... ......|.++.... ...+..|+.++-|..++..++.....
T Consensus 321 D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~lWigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 321 DSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGKLWIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp CSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSCEEEEEBSSCEEEEETTEEEEECC
T ss_pred eCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCCEEEEeCCCcEEEEECCCCeEEEc
Confidence 4 6678899988888888855432111110 01234566665543 45566777777799999876554332
Q ss_pred c---eecccceEEEEee-ccEEEEecCCCeEEEEecCCCCCCccceec-cCCCcceeeecCCCCcEEEEEeeccEEEeec
Q 007229 366 E---KKYDARIKCLAAV-EEVIFTAGFDNKVWRVPLCEGECGDAEHID-VGSQPLDLSLALSSPELALVSTESGVILLDS 440 (612)
Q Consensus 366 ~---~~~~~~i~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (612)
. ......|.++..+ .+.+..++.++.+..++..++......... ....+.++.. +....+.++...++..++.
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d~~g~lwigt~~Gl~~~~~ 476 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYE--DKNKKIWIGTHAGVFVIDL 476 (781)
T ss_dssp -----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEE--CTTSEEEEEETTEEEEEES
T ss_pred cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE--CCCCCEEEEECCceEEEeC
Confidence 2 1144678888884 677888888788888887665432111000 1122333333 3333444455578888873
Q ss_pred cc-ceeeec-------ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec-cccCceEEEEEcCCCcEEEE
Q 007229 441 LK-VMSKID-------LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAITVIQYSPDVSMFAS 511 (612)
Q Consensus 441 ~~-~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~ 511 (612)
.. ....+. ....|.++...++|++.+ |+.++-+..||..+++........ -....|.++...++|.+.+.
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 477 ASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp SSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred CCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 22 222221 135789999999887655 454344888988776542211111 12456899999999987766
Q ss_pred EcCCCeEEEEecCCcceeeec-ccc-cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeeccccc----C--
Q 007229 512 ADGNREAIVWDRVSKEVKLNN-MLF-HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG----G-- 583 (612)
Q Consensus 512 ~~~d~~i~iwd~~~~~~~~~~-~~~-~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~----~-- 583 (612)
.. +|.+..||..+++...-. ..+ ....|.++...++|++.+++ .+| |..++..+ ..+..+....+ .
T Consensus 556 T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~---~~~~~~~~~dGl~~~~f~ 629 (781)
T 3v9f_A 556 TG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSK---KCFYTYDHSNNIPQGSFI 629 (781)
T ss_dssp ET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTT---TEEEEECGGGTCCSSCEE
T ss_pred EC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCC---CceEEecccCCccccccc
Confidence 54 665588998776543111 111 12457889888888766554 556 77788776 33333322111 1
Q ss_pred eeeEEEecCceEEEccCCCeEE
Q 007229 584 VYGVAFMDDFNVVSSGEDACIR 605 (612)
Q Consensus 584 v~~~~~~~~~~l~s~~~d~~i~ 605 (612)
..++...++..|..|+.+|-++
T Consensus 630 ~~~~~~~~~G~l~~g~~~Gl~~ 651 (781)
T 3v9f_A 630 SGCVTKDHNGLIYFGSINGLCF 651 (781)
T ss_dssp EEEEEECTTSCEEEEETTEEEE
T ss_pred cCceEECCCCEEEEECCCceEE
Confidence 2234334455666777777443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-15 Score=134.46 Aligned_cols=239 Identities=10% Similarity=0.017 Sum_probs=167.4
Q ss_pred ceeEEEEccCCCEEEE--------ecCCEEEEEeCCCCceeeEec----cCCCceEEEEECCC-CCEEEEeeCcCeEEEe
Q 007229 20 RGILISGNPKTDTILY--------CNGRSVLIRYLDKPLHVEFYG----EHGYPVTVARYSPN-GEWIASADVSGSVRIW 86 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~--------~~~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~s~d-~~~las~~~d~~i~iw 86 (612)
...+++|+++|+++++ ..++.|.+||..+++...... ++...+.+++++++ |+++++.. .+.|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEE
Confidence 5678999999988777 337899999998887654332 25577999999999 77666554 3479999
Q ss_pred ecCCCceeeee-eee----cCCCeEEEEECCCCCEEEEEeCCC----------CeeeEEEEEecCCceeeeeccCCceEE
Q 007229 87 GTHNGFVLKNE-FKV----LSGRIDDLQWSPDGLRIVACGDGK----------GKSFVRAFMWDSGTTVGDFDGHSRRVL 151 (612)
Q Consensus 87 d~~~~~~~~~~-~~~----~~~~i~~~~~s~~~~~l~~~~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~~v~ 151 (612)
|.. ++ .... ... ....+..+++.++|+.+++...+. ......++.++.......+..+.....
T Consensus 98 d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~ 175 (314)
T 1pjx_A 98 QTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN 175 (314)
T ss_dssp ETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE
T ss_pred eCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcc
Confidence 998 65 3222 111 123588999999998877765431 000124777764333333333444568
Q ss_pred EEEEc----CCCCEEEEEeecCCeEEEEeCC-CCe-----eeecccccc-cceEEEEECCCCCeEEEEEcCCcEEEEecC
Q 007229 152 SCEFK----PTRPFRIATCGEDFLVNFYEGP-PFK-----FKLSHREHS-NFVNCIRFSPDGSKLISVSSDRKGLIYDGK 220 (612)
Q Consensus 152 ~~~~~----~~~~~~l~~~~~d~~i~~wd~~-~~~-----~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 220 (612)
.++++ |+++.++++...++.|.+||.. +++ ....+.++. ..+..++++++|++.++...++.|.+||.+
T Consensus 176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 89999 9997556666778999999976 443 222334443 568899999999887777778999999988
Q ss_pred CCCeeeeeeccCCccccEEEEEEecCCCEEEEE-eCCCcEEEEEe
Q 007229 221 SGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWEI 264 (612)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~~ 264 (612)
+++....+. .+...+.+++|+|+++.|+++ ..++.|..|++
T Consensus 256 ~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 256 GGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 777766662 344678999999999955554 45678999987
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-13 Score=125.97 Aligned_cols=278 Identities=8% Similarity=-0.021 Sum_probs=187.3
Q ss_pred EEccCCCEEEEecC--C----EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeec
Q 007229 25 SGNPKTDTILYCNG--R----SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGT 88 (612)
Q Consensus 25 ~~s~d~~~l~~~~~--~----~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~ 88 (612)
...|+++++.+... . .|.++|..+++.+..+.....+ .+++||||++|..+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 45588887766652 2 8899999999988877654444 999999999999885 3678999999
Q ss_pred CCCceeeeeeeec-------CCCeEEEEECCCCCEEEEEeCC-CCeeeEEEEEecCCceeee-eccCCceEEEEEEcCCC
Q 007229 89 HNGFVLKNEFKVL-------SGRIDDLQWSPDGLRIVACGDG-KGKSFVRAFMWDSGTTVGD-FDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 89 ~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~-~~~~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~ 159 (612)
.+.+.+. .+... ......++|+|||++|+++... .. .+.+++ ++++.+.. +.... ++.+.|++
T Consensus 105 ~t~~~~~-~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~--~v~viD-~t~~~~~~~i~~~~----~~~~~~~~ 176 (373)
T 2mad_H 105 VTFLPIA-DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP--AVGLVV-QGGSSDDQLLSSPT----CYHIHPGA 176 (373)
T ss_pred CCCcEEE-EEECCCccccccCCCccceEECCCCCEEEEEecCCCC--eEEEEE-CCCCEEeEEcCCCc----eEEEEeCC
Confidence 9877433 33211 1235689999999999998753 22 477888 88888777 54322 25566777
Q ss_pred CEEEEEeecCCeEEEEeCCCCeeeeccc-----ccccc-eEEEEECCCCCeEEEEEcCCcEEEEecCCCCe--eeeeecc
Q 007229 160 PFRIATCGEDFLVNFYEGPPFKFKLSHR-----EHSNF-VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK--IGEFSSE 231 (612)
Q Consensus 160 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~ 231 (612)
+..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+..+.+.+.|+..+.. +..+...
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeec
Confidence 656788888999999999 776653221 11112 23345677766655556788999999876532 2222100
Q ss_pred C-------CccccEEEEEEecCCCEEEEEeC----------CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeec
Q 007229 232 D-------GHHGSIYAVSWSPDGKKVLTVSA----------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW 294 (612)
Q Consensus 232 ~-------~~~~~v~~i~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (612)
. ........++++|+++.+++... .+.|.++|. .+.+.+..+...
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g-------------- 317 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLG-------------- 317 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECC--------------
Confidence 0 01223445788998888777643 346888888 777777666432
Q ss_pred cCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc-EEEEEe-cCCcEEEEEcCCceeeee
Q 007229 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ-TILSSS-YDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~ 365 (612)
.....+.+++. ++ .++++. .++.|.++|..+.+....
T Consensus 318 ---------------------------------~~p~~i~~s~D-g~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 318 ---------------------------------HDVDAISVAQD-GGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ---------------------------------CCcCeEEECCC-CCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 13456777732 55 677666 589999999998877655
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-14 Score=125.95 Aligned_cols=226 Identities=8% Similarity=0.042 Sum_probs=161.5
Q ss_pred eEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeee
Q 007229 22 ILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
-+..|+|+++.|+... ++.|..||..+++... + .....+.+++++|+|+++++. ++.|.+||..+++. .....
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~-~~~~~ 90 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA-VVLAT 90 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE-EEEEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE-EEEEe
Confidence 4789999777666664 6899999999876532 3 345789999999999966654 56899999988763 22222
Q ss_pred e----cCCCeEEEEECCCCCEEEEEeCCCC------eeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 100 V----LSGRIDDLQWSPDGLRIVACGDGKG------KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 100 ~----~~~~i~~~~~s~~~~~l~~~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. ....+..++++|+|+.+++...... .....++.++....+..+..+......++|+|+++.++++.+.+
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~ 170 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS 170 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCC
Confidence 1 1235789999999997775533210 01246788874433333444445678999999999767777888
Q ss_pred CeEEEEeC--CCCee-----eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 170 FLVNFYEG--PPFKF-----KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 170 ~~i~~wd~--~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
+.|..|++ .++.. ...+..+...+..+++.++|++.++....+.|..||.++++.+..+. .+...+++++
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~---~p~~~~t~~~ 247 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK---LPVDKTTSCC 247 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---CSSSBEEEEE
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---CCCCCceEEE
Confidence 99999986 45543 22233344678899999999877776677889999999899888873 3446799999
Q ss_pred Ee-cCCCEEEEEeC
Q 007229 243 WS-PDGKKVLTVSA 255 (612)
Q Consensus 243 ~~-~~~~~l~~~~~ 255 (612)
|. |+++.|++++.
T Consensus 248 f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 248 FGGKNYSEMYVTCA 261 (297)
T ss_dssp EESGGGCEEEEEEB
T ss_pred EeCCCCCEEEEEcC
Confidence 98 88887766654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-14 Score=131.85 Aligned_cols=243 Identities=6% Similarity=-0.031 Sum_probs=172.1
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
....+++.. ++..++.. ++.|.+||.++++.+..+. .......+++++++++.++...++.|.+||..+++ +...+
T Consensus 45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~-~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE-ITGYI 121 (328)
T ss_dssp CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE-EEEEE
T ss_pred cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe-EEEEE
Confidence 356677743 33334443 6899999999999988775 45678899999999665555588999999999987 33334
Q ss_pred eecC-----CCeEEEEECCCCCEEEEEeC--CCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC--
Q 007229 99 KVLS-----GRIDDLQWSPDGLRIVACGD--GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-- 169 (612)
Q Consensus 99 ~~~~-----~~i~~~~~s~~~~~l~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 169 (612)
.... .....+++ ++..|.++.. ++ .+.+++.++++.+..+... .....++++|+|+ +++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~---~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~~~~~ 194 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQN---RILKIDTETDKVVDELTIG-IQPTSLVMDKYNK-MWTITDGGYE 194 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCC---EEEEEETTTTEEEEEEECS-SCBCCCEECTTSE-EEEEBCCBCT
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCC---EEEEEECCCCeEEEEEEcC-CCccceEEcCCCC-EEEEECCCcc
Confidence 3322 14566777 4555555543 33 4677777788887777643 3456889999998 46666554
Q ss_pred --------CeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEE
Q 007229 170 --------FLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240 (612)
Q Consensus 170 --------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 240 (612)
+.|.++|..+++....+... ......++|+|++++|+++.. .|.+||..+++...... ..........
T Consensus 195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~g 271 (328)
T 3dsm_A 195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYG 271 (328)
T ss_dssp TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEE
T ss_pred CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee-ecCCCCceEE
Confidence 79999999999877665432 236899999999999887654 89999998887642211 1112467889
Q ss_pred EEEec-CCCEEEEE----eCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 241 VSWSP-DGKKVLTV----SADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 241 i~~~~-~~~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
++++| +++.+++. ..++.|.+||. . ++.+..+...
T Consensus 272 i~vdp~~g~lyva~~~~y~~~~~V~v~d~----~-g~~~~~i~~G 311 (328)
T 3dsm_A 272 LTVNPNNGEVYVADAIDYQQQGIVYRYSP----Q-GKLIDEFYVG 311 (328)
T ss_dssp EEECTTTCCEEEEECTTSSSEEEEEEECT----T-CCEEEEEEEE
T ss_pred EEEcCCCCeEEEEcccccccCCEEEEECC----C-CCEEEEEEec
Confidence 99999 45555554 46789999998 5 8888777643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-14 Score=144.13 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=150.2
Q ss_pred ccCCCEEEEec--C----CEEEEEeCC---CCceeeEe------ccCCCceEEEEECCCCCEEEEeeCc-----CeEEEe
Q 007229 27 NPKTDTILYCN--G----RSVLIRYLD---KPLHVEFY------GEHGYPVTVARYSPNGEWIASADVS-----GSVRIW 86 (612)
Q Consensus 27 s~d~~~l~~~~--~----~~i~i~~~~---~~~~~~~~------~~h~~~v~~~~~s~d~~~las~~~d-----~~i~iw 86 (612)
+|||+++++.. + ..+.+.+.. .++....+ .+|...+..++|||||++||.++.+ .+|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 49999999886 2 244455554 44443322 2344578999999999999987644 469999
Q ss_pred ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe---------eeEEEEEec--CCc----eeeeeccCCceEE
Q 007229 87 GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK---------SFVRAFMWD--SGT----TVGDFDGHSRRVL 151 (612)
Q Consensus 87 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~---------~~i~i~~~~--~~~----~~~~~~~~~~~v~ 151 (612)
|+.+++.+.. ..+...+..++|+|| +.|+.+..+... ...+|+.|+ ++. .+.....+...+.
T Consensus 195 dl~tg~~~~~--~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKPLAD--ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCEEEE--EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCCCCc--cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9999985332 222223467899999 999988865531 012355555 333 3333344445688
Q ss_pred EEEEcCCCCEEEEEeec----CCeEEEEeCCCC--eeeecccccccceEEEEECCCCCeEEEEEcC----CcEEEEecCC
Q 007229 152 SCEFKPTRPFRIATCGE----DFLVNFYEGPPF--KFKLSHREHSNFVNCIRFSPDGSKLISVSSD----RKGLIYDGKS 221 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vwd~~~ 221 (612)
.+.|+|||++++++... ...|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 99999999974444432 348999998876 31334444555555553 4899988888764 4599999887
Q ss_pred CC-eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 222 GE-KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 222 ~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+. ....+. ..+...+..++++ ++.++++...|+..++|.+
T Consensus 351 ~~~~~~~l~--~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 351 STPRFDTVV--PESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp SSCEEEEEE--CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CccccEEEe--cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 52 333332 2344557778887 5677788888998888877
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-13 Score=122.95 Aligned_cols=287 Identities=10% Similarity=-0.010 Sum_probs=178.9
Q ss_pred EEcCCCCEEEEEee-cCC---eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEEec
Q 007229 154 EFKPTRPFRIATCG-EDF---LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIYDG 219 (612)
Q Consensus 154 ~~~~~~~~~l~~~~-~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~ 219 (612)
...|++++++++.. ... .|.++|..+++.+..+.....+ .++++|||++|+++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34467775444433 233 8899999999988777654444 999999999999886 3678999999
Q ss_pred CCCCeeeeeecc-CC---ccccEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEee-eeccCccccceeeeee
Q 007229 220 KSGEKIGEFSSE-DG---HHGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKT-FASSTSNAVEDMLVGC 292 (612)
Q Consensus 220 ~~~~~~~~~~~~-~~---~~~~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 292 (612)
.+.+.+..+... .. .......++|+|||++|+++.. ++.|.++| . +++.+.. +....
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~----t~~~~~~~i~~~~----------- 168 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q----GGSSDDQLLSSPT----------- 168 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C----CCCEEeEEcCCCc-----------
Confidence 999888877432 00 0123558999999999998874 46788887 3 3333333 22110
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDAR 372 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 372 (612)
++.+.+.....+++.+.||.+.++|. +++...... ...
T Consensus 169 ---------------------------------------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~--~~~ 206 (373)
T 2mad_H 169 ---------------------------------------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL--VGA 206 (373)
T ss_pred ---------------------------------------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe--ccc
Confidence 11222222455666777888888887 554331100 000
Q ss_pred eEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccce
Q 007229 373 IKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT 452 (612)
Q Consensus 373 i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (612)
+ + . ....-
T Consensus 207 ~---------------------~-~--------------------------------------------------~~~p~ 214 (373)
T 2mad_H 207 M---------------------L-T--------------------------------------------------AAQNL 214 (373)
T ss_pred c---------------------c-c--------------------------------------------------CCcce
Confidence 0 0 0 00000
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc----------ccCceEEEEEcCCCcEEEEEcC--------
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK----------HRGAITVIQYSPDVSMFASADG-------- 514 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~-------- 514 (612)
.....+.+++..++..+.++.+.+.|+.+........+.- .......++++||++.+..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~ 294 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence 1223455655554444567788888886543211111110 1122445789999988777643
Q ss_pred --CCeEEEEecCCcceeeecccccccceeEEEecCCCc-EEEEee-cCcEEEEEEccCCCcceeee
Q 007229 515 --NREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST-MVATGS-IDTCVIIYEIGKPASSRITI 576 (612)
Q Consensus 515 --d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~~ 576 (612)
++.|.++|+.+++.+.... -......++|+|||+ +++++. .++.|.++|..+ . +.+..
T Consensus 295 ~~~~~V~VID~~t~~vv~~i~--~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t-~-~vv~~ 356 (373)
T 2mad_H 295 AAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-G-DQDQS 356 (373)
T ss_pred CCCCeEEEEECCCCEEEEEEE--CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC-C-CEEee
Confidence 3589999999998874432 234688999999999 777776 589999999998 5 45544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-15 Score=150.57 Aligned_cols=242 Identities=11% Similarity=-0.017 Sum_probs=164.0
Q ss_pred ceeEEEEccCCCEEEEecC------CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCe-----------
Q 007229 20 RGILISGNPKTDTILYCNG------RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS----------- 82 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~----------- 82 (612)
.+..++|||||++||++.+ ..|++||+++++.+.. ..+...+..++|||| +.|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 6789999999999999862 3799999999987653 223333468999999 99998876554
Q ss_pred ---EEEeecCCCce---eeeeeeecCCCeEEEEECCCCCEEEEEeCCC--CeeeEEEEEecCCc-e-eeeeccCCceEEE
Q 007229 83 ---VRIWGTHNGFV---LKNEFKVLSGRIDDLQWSPDGLRIVACGDGK--GKSFVRAFMWDSGT-T-VGDFDGHSRRVLS 152 (612)
Q Consensus 83 ---i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--~~~~i~i~~~~~~~-~-~~~~~~~~~~v~~ 152 (612)
|.+|++.++.. +......+...+..+.|||||++|+..+.+. ....+.+++.+++. . ...+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 89999987652 2111122233588999999999999887543 22234455554552 2 5556555555555
Q ss_pred EEEcCCCCEEEEEeec----CCeEEEEeCCCC--eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecC-CCCee
Q 007229 153 CEFKPTRPFRIATCGE----DFLVNFYEGPPF--KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGK-SGEKI 225 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~----d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~ 225 (612)
.. +|+++. |+..+. ++.|.+||+.++ +....+..+...+..++++ ++.++++...|+..++|.+. +++..
T Consensus 322 ~~-~~dg~~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 322 FV-DGVGDQ-LWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EE-EEETTE-EEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred EE-eccCCE-EEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 43 488885 544443 456999998874 3344445555667778887 56677888889887777654 45555
Q ss_pred eeeeccCCccccEEEEEEecCCCEEEEEe----CCCcEEEEEeecCCCCCe
Q 007229 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVS----ADKSAKVWEILEDGSGGR 272 (612)
Q Consensus 226 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~ 272 (612)
..+. ......+..+.++|+++.++... ..+++.+||+ .+++
T Consensus 399 ~~l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~----~tg~ 443 (741)
T 1yr2_A 399 GAVS--LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP----ATAK 443 (741)
T ss_dssp EECB--CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET----TTTE
T ss_pred eecc--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC----CCCc
Confidence 5552 12456788999999988666432 2378999998 6655
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-14 Score=127.24 Aligned_cols=194 Identities=7% Similarity=0.068 Sum_probs=150.4
Q ss_pred CCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCC
Q 007229 69 PNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHS 147 (612)
Q Consensus 69 ~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 147 (612)
..+++|++++.++.|.+||.++++.+ -.+..+. ..+.++.++|+|+.|++ . +. .+..++. +++.+..+..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~-w~~~~~~~~~~~~~~~~pdG~ilvs-~-~~---~V~~~d~-~G~~~W~~~~~~ 75 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIV-WEYPLEKGWECNSVAATKAGEILFS-Y-SK---GAKMITR-DGRELWNIAAPA 75 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEE-EEEECCTTCCCCEEEECTTSCEEEE-C-BS---EEEEECT-TSCEEEEEECCT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEE-EEeCCCccCCCcCeEECCCCCEEEe-C-CC---CEEEECC-CCCEEEEEcCCC
Confidence 35678999999999999999999844 4555555 57899999999998883 3 22 2344444 789999988753
Q ss_pred -ceEEEEEEcCCCCEEEEEeec-CCeEEEEeCCCCeeeeccc------ccccceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 148 -RRVLSCEFKPTRPFRIATCGE-DFLVNFYEGPPFKFKLSHR------EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 148 -~~v~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
..+.++.+.|+|+. +++.+. ++.|..+|. +++.+..+. .+......+++.++|+++++...++.|..||.
T Consensus 76 ~~~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 76 GCEMQTARILPDGNA-LVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP 153 (276)
T ss_dssp TCEEEEEEECTTSCE-EEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred CccccccEECCCCCE-EEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence 57899999999994 666665 778888885 666665543 22234566788999999999999999999998
Q ss_pred CCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc
Q 007229 220 KSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
+ |+.+..+. ....+.++.+.++++.++++..++.|..+|. .+++.+..+...
T Consensus 154 ~-G~~~w~~~----~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~----~tG~~~w~~~~~ 205 (276)
T 3no2_A 154 N-GQLLNSVK----LSGTPFSSAFLDNGDCLVACGDAHCFVQLNL----ESNRIVRRVNAN 205 (276)
T ss_dssp T-SCEEEEEE----CSSCCCEEEECTTSCEEEECBTTSEEEEECT----TTCCEEEEEEGG
T ss_pred C-CCEEEEEE----CCCCccceeEcCCCCEEEEeCCCCeEEEEeC----cCCcEEEEecCC
Confidence 7 99998883 2345567788899999988888888999998 779998888643
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-10 Score=116.00 Aligned_cols=520 Identities=11% Similarity=0.017 Sum_probs=302.5
Q ss_pred CceeEEEEccCCC-EEEEecCCEEEEEeCCCCceeeEecc-------CCCceEEEEECC--CCCEEEEeeCcCeEEEeec
Q 007229 19 GRGILISGNPKTD-TILYCNGRSVLIRYLDKPLHVEFYGE-------HGYPVTVARYSP--NGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 19 ~~v~~~~~s~d~~-~l~~~~~~~i~i~~~~~~~~~~~~~~-------h~~~v~~~~~s~--d~~~las~~~d~~i~iwd~ 88 (612)
..|.++...++|+ +-+...++.+..||..+.+....... ....|.++...+ +|.+.+ ++.++-|..+|.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWV-CTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEE-EESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEE-EECCCCeeEEEC
Confidence 4689999999998 44443454799999987665443111 123688999888 776554 443455888998
Q ss_pred CCCceeeeeee------ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec--------cCCceEEE
Q 007229 89 HNGFVLKNEFK------VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD--------GHSRRVLS 152 (612)
Q Consensus 89 ~~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~--------~~~~~v~~ 152 (612)
.+++. . .+. .....|.++...++|...+.....+ ++.++ +++ ...+. -....|.+
T Consensus 145 ~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~G------l~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~ 215 (781)
T 3v9f_A 145 ATGKF-T-HYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGG------LSILSLNDKS-VKHFVHDPQNPNSLPGNDVRC 215 (781)
T ss_dssp TTTEE-E-EESTTTCTTCSCCCEEEEEEEETTEEEEEETTTE------EEEEETTTTE-EEEECC--------CCSSEEE
T ss_pred CCCeE-E-eeccCcccCCCccceEEEEECCCCCEEEEecCCC------eEEEcCCCCc-eEeeecCCCCcccCCCCceeE
Confidence 77652 2 121 1134578888888886665433323 44554 332 22221 11356899
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc-------cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCee
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE-------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 225 (612)
+...+++. |..|+.+ -+.+||..+++....... ....|.++...++|. |..|+..+-|.++|..+++..
T Consensus 216 i~~d~~g~--lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 291 (781)
T 3v9f_A 216 IYKDTNGN--IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFL 291 (781)
T ss_dssp EEECTTCC--EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---
T ss_pred EEEcCCCC--EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeee
Confidence 99988887 4445555 588999877665432211 235699999888886 555676567899998766533
Q ss_pred eeee-------c----cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc-----Cccccceee
Q 007229 226 GEFS-------S----EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS-----TSNAVEDML 289 (612)
Q Consensus 226 ~~~~-------~----~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 289 (612)
.... . .......|.++...++|. |-.|+.++-|..++. ..... ..+... ........+
T Consensus 292 ~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~----~~~~~-~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 292 LPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN----APPTF-HTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp ------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS----SCCSC-EEEC----CCCSSCCSSSCE
T ss_pred eeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC----CCCcc-eeeccCccccccCCCCCcce
Confidence 2110 0 112345799999998886 556666777888886 43322 222211 111122345
Q ss_pred eeeecc-CCEEEEEEcCCEEEEEEcCCCCCCcee--ecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 290 VGCLWQ-NDHLITVSLGGIISIFSASNLDKAPLS--FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 290 ~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
.++..+ ++.+.+|+.++-+..++.......... .......|.++.... ...+..|+.++-+..++..+++.....
T Consensus 366 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~--~g~lWigt~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 366 SSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS--EGNLWFGTYLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp EEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT--TSCEEEEETTEEEEEECSSSCEEEECC
T ss_pred EEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC--CCCEEEEeccCCEEEEcCCCCcEEEec
Confidence 555544 578889998888888885432111000 012234566666543 445566777777999998877655443
Q ss_pred e--ecccceEEEEee-ccEEEEecCCCeEEEEecCCCCCCccceec----cCCCcceeeecCCCCcEEEEEeeccEEEee
Q 007229 367 K--KYDARIKCLAAV-EEVIFTAGFDNKVWRVPLCEGECGDAEHID----VGSQPLDLSLALSSPELALVSTESGVILLD 439 (612)
Q Consensus 367 ~--~~~~~i~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (612)
. .....|.++..+ .+.+..++. +.+..++..+.......... ....+..+...+++ .+.+.+...++..++
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-RFWIGTFGGGVGIYT 521 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-CEEEEESSSCEEEEC
T ss_pred cCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-CEEEEEcCCCEEEEe
Confidence 2 145678888884 566777776 66888887765543211111 01233344444433 344444447888887
Q ss_pred cc-cceeeec-----ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc-ccCceEEEEEcCCCcEEEEE
Q 007229 440 SL-KVMSKID-----LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK-HRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 440 ~~-~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~ 512 (612)
.. .....+. ....|.++...++|.+.+. +.+|.+..||..+++........+ ....|.++...++|.+.+++
T Consensus 522 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp TTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred CCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc
Confidence 32 2233322 2346889999998876554 446655889987776522111111 12468889999888776664
Q ss_pred cCCCeEEEEecCCcceeeec-ccc---cccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 513 DGNREAIVWDRVSKEVKLNN-MLF---HTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~~~~~-~~~---~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
.+| |..++..+.+...-. ..+ ..-...++...++|++++ |+.+| +..++.+
T Consensus 601 -~~G-l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 601 -NTG-ISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPD 655 (781)
T ss_dssp -SSC-EEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSC
T ss_pred -CCc-eEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCc-eEEEChh
Confidence 444 777888766543111 111 111234677778887554 66677 5566654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-14 Score=129.66 Aligned_cols=286 Identities=12% Similarity=0.036 Sum_probs=189.5
Q ss_pred CCCCEEEEEeecC----CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEEecCCC
Q 007229 157 PTRPFRIATCGED----FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIYDGKSG 222 (612)
Q Consensus 157 ~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~ 222 (612)
|+++.++++...+ +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 4556555555544 79999999999999888755555 899999999998876 3678999999999
Q ss_pred Ceeeeeecc-CC---ccccEEEEEEecCCCEEEEEeC--CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 223 EKIGEFSSE-DG---HHGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 223 ~~~~~~~~~-~~---~~~~v~~i~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
+.+..+... .. .......++|+|||++++++.. ++.|.+.|+ .+.+.+..+....
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~----~t~kvv~~I~v~g--------------- 220 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDL----EGKTFDRMLDVPD--------------- 220 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEET----TTTEEEEEEECCS---------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEEC----CCCeEEEEEEcCC---------------
Confidence 998887432 00 1123457899999999998874 578999999 8888887765431
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~ 376 (612)
. ....+.....+++.+.||.+.+.+...++......
T Consensus 221 ---------------------------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--------- 256 (426)
T 3c75_H 221 ---------------------------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT--------- 256 (426)
T ss_dssp ---------------------------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------
T ss_pred ---------------------------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------
Confidence 0 01111114555666667777666663332211000
Q ss_pred EeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEE
Q 007229 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTAC 456 (612)
Q Consensus 377 ~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 456 (612)
..++..... ....+
T Consensus 257 ----------------~~~~v~~~p--------------------------------------------------~~~~~ 270 (426)
T 3c75_H 257 ----------------EVFHTEDEL--------------------------------------------------LINHP 270 (426)
T ss_dssp ----------------CCCSCTTSC--------------------------------------------------BCSCC
T ss_pred ----------------eeeccCCCc--------------------------------------------------eeeEe
Confidence 011111000 01124
Q ss_pred EEccCCCeEEEEecCCeEEEEEccCcccccceeec----------cccCceEEEEEcCCCcEEEEEcC----------CC
Q 007229 457 AIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE----------KHRGAITVIQYSPDVSMFASADG----------NR 516 (612)
Q Consensus 457 ~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~----------d~ 516 (612)
.++++++.++.....+.|.+.|..+........+. ........++++|+++++.+... ++
T Consensus 271 ~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 271 AFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp EECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred eecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence 67888888777778889999998765431111110 01122234689999887776642 35
Q ss_pred eEEEEecCCcceeeecccccccceeEEEecCCCc-EEEEee-cCcEEEEEEccCCCcceeeee
Q 007229 517 EAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST-MVATGS-IDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 517 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~d~~i~iwd~~~~~~~~~~~~ 577 (612)
.|.+.|+.+.+.+..... ......++|+|||+ +|+++. .++.|.++|..+ . +.+..+
T Consensus 351 ~VsVID~~T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~-kvv~tI 409 (426)
T 3c75_H 351 FVVVLNAETGERINKIEL--GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-G-EELRSV 409 (426)
T ss_dssp EEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT-C-CEEEEE
T ss_pred EEEEEECCCCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-C-CEEEEe
Confidence 799999999998754332 33588999999999 888777 589999999998 5 555554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-13 Score=122.82 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=132.1
Q ss_pred EEECCCCCEEEEEeCCC--CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee---------cCCeEEEEe
Q 007229 108 LQWSPDGLRIVACGDGK--GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG---------EDFLVNFYE 176 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~d~~i~~wd 176 (612)
....|+++.+.+..... ....+.+.+.++++.+..++.-..+ . ++++||++++.++.. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 45679999988886631 0125677777789999988866666 4 999999997555442 467899999
Q ss_pred CCCCeeeeccccc-------ccceEEEEECCCCCeEEEEEc--CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 177 GPPFKFKLSHREH-------SNFVNCIRFSPDGSKLISVSS--DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 177 ~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
..+++.+..+.-. ......++|+|||++|+++.. ++.|.++|+.+++.+.++... +. ...+....
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~----g~--~~~~P~g~ 189 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP----DC--YHIFPTAP 189 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----SE--EEEEEEET
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC----Cc--ceeecCCC
Confidence 9999988776422 124567899999999998874 689999999999999988432 11 22333345
Q ss_pred CEEEEEeCCCcEEEEEeecCCCC-CeeEeeeeccCccccceeee-eeec--cCCEEEEEEcCCEEEEEEcCCC
Q 007229 248 KKVLTVSADKSAKVWEILEDGSG-GRVIKTFASSTSNAVEDMLV-GCLW--QNDHLITVSLGGIISIFSASNL 316 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~~~~~~~~ 316 (612)
+.+++.+.||.+.+.++ .. ++...... .........+. ...+ .++.++..+.+|.+.++|....
T Consensus 190 ~~~~~~~~DG~~~~v~~----~~~g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAF----GTEGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 257 (386)
T ss_dssp TEEEEEETTSCEEEEEC----CSSSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred ceeEEECCCCCEEEEEC----CCCCeEEEeec-ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence 66778888999999988 43 33322111 11001111111 1122 3556777888999999997654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-13 Score=125.01 Aligned_cols=225 Identities=13% Similarity=0.043 Sum_probs=155.0
Q ss_pred eeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 21 GILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
..+.+|+|+++.+++.. ++.|..||.++++... +. +...+.+++++|+|+++++. .+ .|.+||..+++. . .+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~-~-~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-T-LH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-E-EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE-E-EE
Confidence 45789999877666654 6899999999876543 32 45689999999999988765 34 499999988763 2 22
Q ss_pred eec-----CCCeEEEEECCCCCEEEEEeCCC-CeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 99 KVL-----SGRIDDLQWSPDGLRIVACGDGK-GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 99 ~~~-----~~~i~~~~~s~~~~~l~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
... ...+..++++|+|+.+++..... ......++.+++++ +..+..+......++|+|+++.+.++.+.++.|
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 211 23588999999999776554210 00013566666433 333333334567899999998656666778899
Q ss_pred EEEeCC--CC-ee-----eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 173 NFYEGP--PF-KF-----KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 173 ~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
.+|++. ++ .. ...+......+..+++.++|++.++...++.|.+||. +++.+..+. .+...+.+++|.
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~---~~~~~~~~~af~ 279 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE---VPGKQTTCPAFI 279 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE---CSCSBEEEEEEE
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE---CCCCCcEEEEEe
Confidence 999975 55 32 2223333456788999999987776666788999998 677766663 344579999998
Q ss_pred -cCCCEEEEEeCC
Q 007229 245 -PDGKKVLTVSAD 256 (612)
Q Consensus 245 -~~~~~l~~~~~d 256 (612)
++++.|++++..
T Consensus 280 g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 280 GPDASRLLVTSAR 292 (326)
T ss_dssp STTSCEEEEEEBC
T ss_pred cCCCCEEEEEecC
Confidence 888777665544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.7e-12 Score=113.30 Aligned_cols=282 Identities=12% Similarity=-0.005 Sum_probs=185.1
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCC
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSG 222 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 222 (612)
......+.++++.+++. +.++...++.|..||.. ++... .+......+.++++.+++++.++...++.|..||.. +
T Consensus 16 ~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp SSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34556889999999998 57766678999999988 55433 233334678999999999877765557889999977 5
Q ss_pred CeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE
Q 007229 223 EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV 302 (612)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (612)
+.. .+... .....+..+++.++++++++...++.|..++. . ++.. .+.
T Consensus 93 ~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~----~-g~~~-~~~------------------------ 140 (300)
T 2qc5_A 93 GFT-EYPLP-QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA----D-GTIY-EYD------------------------ 140 (300)
T ss_dssp CEE-EEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT----T-SCEE-EEE------------------------
T ss_pred CeE-EecCC-CCCCCCccceECCCCCEEEEccCCCeEEEECC----C-CCEE-Ecc------------------------
Confidence 543 23211 23356788888888876666555666666665 1 1111 000
Q ss_pred EcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccE
Q 007229 303 SLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382 (612)
Q Consensus 303 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (612)
...
T Consensus 141 ------------------------------------------------------~~~----------------------- 143 (300)
T 2qc5_A 141 ------------------------------------------------------LPN----------------------- 143 (300)
T ss_dssp ------------------------------------------------------CSS-----------------------
T ss_pred ------------------------------------------------------CCC-----------------------
Confidence 000
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
....+..+++.+++
T Consensus 144 ------------------------------------------------------------------~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 144 ------------------------------------------------------------------KGSYPAFITLGSDN 157 (300)
T ss_dssp ------------------------------------------------------------------TTCCEEEEEECTTS
T ss_pred ------------------------------------------------------------------CCCCceeEEECCCC
Confidence 00125667788888
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
++.++...++.|..++. +++.. ......+...+..+++.+++.+.++....+.|.+||. +++........+...+.+
T Consensus 158 ~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 234 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHA 234 (300)
T ss_dssp SEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CEEEEecCCCeEEEECC-CCcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceE
Confidence 86665555778888888 44432 1222334456889999999988888777789999998 444432223334566889
Q ss_pred EEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 543 LAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 543 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
+++.++|++.++...++.|..|+... . .....+......+.++++. ++..+++.. . .|..++.+
T Consensus 235 i~~d~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGANQIGRITNDN-T-IQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECTTS-C-EEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEECCCCCEEEeccCCCeEEEECCCC-c-EEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 99999998777766678999999843 2 2222233345568899998 666555554 4 66666654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-13 Score=125.93 Aligned_cols=278 Identities=10% Similarity=0.044 Sum_probs=185.4
Q ss_pred ccCCCEEEEecC------CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeecCC
Q 007229 27 NPKTDTILYCNG------RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGTHN 90 (612)
Q Consensus 27 s~d~~~l~~~~~------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~~~ 90 (612)
.|+++.+.+... +.|.++|..+++.+..+.--..+ .+++||||++|..+. .++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 367777777653 79999999999999888755555 899999999888775 467899999999
Q ss_pred Cceeeeeeeec-------CCCeEEEEECCCCCEEEEEeCC-CCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEE
Q 007229 91 GFVLKNEFKVL-------SGRIDDLQWSPDGLRIVACGDG-KGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 91 ~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (612)
.+.+ ..+... ......++|+|||++|+++... .. .+.+.+..+++.+..+.--.. ....|+++..
T Consensus 159 ~~vv-~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~--~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~ 231 (426)
T 3c75_H 159 FLPI-ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP--AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTV 231 (426)
T ss_dssp CCEE-EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC--EEEEEETTTTEEEEEEECCSE----EEEEEEETTE
T ss_pred CcEE-EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC--eEEEEECCCCeEEEEEEcCCc----eeeccCCCcE
Confidence 9843 344321 2345688999999999998753 22 467777778888887764221 2334444335
Q ss_pred EEEeecCCeEEEEeCCCCeeee----cccccccc-eEEEEECCCCCeEEEEEcCCcEEEEecCCCCee--eeeeccC---
Q 007229 163 IATCGEDFLVNFYEGPPFKFKL----SHREHSNF-VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI--GEFSSED--- 232 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~--- 232 (612)
+++.+.||.+.+.+..+++... .+.....+ ...+.|.+++..++.....+.+.+.|...+... ..+....
T Consensus 232 ~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~ 311 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAE 311 (426)
T ss_dssp EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTT
T ss_pred EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccc
Confidence 6666667777777765554331 11111111 123578999988888888899999998655422 1111000
Q ss_pred ----CccccEEEEEEecCCCEEEEEeC----------CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCE
Q 007229 233 ----GHHGSIYAVSWSPDGKKVLTVSA----------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 233 ----~~~~~v~~i~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
........++++|+++++++... ++.|.++|. .+.+.+..+....
T Consensus 312 i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~vg~----------------- 370 (426)
T 3c75_H 312 RADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIELGH----------------- 370 (426)
T ss_dssp GGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEEEE-----------------
T ss_pred cccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEECCC-----------------
Confidence 01111223689999887777642 346999998 8888887765431
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCc-EEEEEe-cCCcEEEEEcCCceeeee
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ-TILSSS-YDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~ 365 (612)
....+.+++. ++ .+++.. .++.|.++|..+.+....
T Consensus 371 ------------------------------~P~gia~spD-g~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 371 ------------------------------EIDSINVSQD-AEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp ------------------------------EECEEEECCS-SSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ------------------------------CcCeEEEccC-CCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 3456667633 55 666666 589999999998887655
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-12 Score=114.09 Aligned_cols=274 Identities=9% Similarity=-0.053 Sum_probs=182.7
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeE-eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+.+++++++|++.++.. ++.|.+||.. ++.... +..+...+.++++.++|++.++...++.|..||.. ++...
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 35788999999999877775 6899999988 554432 23344679999999999988887778899999988 54322
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-Cceee-eeccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTVG-DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
.........+..+++.++|+.+++...++ .++.++. ++... .+......+..+++.++++ +.++...++.|.
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~ 170 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGDIWFTQLNGD-----RIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIG 170 (300)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTT-----EEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEE
T ss_pred ecCCCCCCCCccceECCCCCEEEEccCCC-----eEEEECCCCCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEE
Confidence 22222346789999999998777665444 2555552 43332 2333456789999999998 577766678999
Q ss_pred EEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 174 FYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 174 ~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
.+|. +++... ....+...+..+++.++|++.++....+.|.+||. +++..... . ......+.+++++++|+..++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~-~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-I-PTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-C-SSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-C-CCCCCCceEEEECCCCCEEEe
Confidence 9998 554433 22334457899999999976665555678999998 55544322 1 134566889999999986666
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEEEEEc
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSA 313 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 313 (612)
...++.|..|+. . ++.. .+..... .....++... ++.+.+++.. .|..++.
T Consensus 247 ~~~~~~i~~~~~----~-g~~~-~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 247 EWGANQIGRITN----D-NTIQ-EYQLQTE---NAEPHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp ETTTTEEEEECT----T-SCEE-EEECCST---TCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred ccCCCeEEEECC----C-CcEE-EEECCcc---CCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence 656688999986 2 3222 2222210 1123333333 4556666654 6666663
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-13 Score=120.93 Aligned_cols=240 Identities=7% Similarity=-0.083 Sum_probs=161.3
Q ss_pred ceEEEEECCCCCEEE-EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCc
Q 007229 61 PVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGT 138 (612)
Q Consensus 61 ~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~ 138 (612)
...+++++++|++++ +...++.|.+||..+... ......+...+..++++++|+.+++.. ++ .|+.++ .+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~-----~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGTVYVTDF-NN-----RVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TT-----EEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCCEEEEcC-CC-----EEEEEeCCCc
Confidence 778999999999777 556788999999876542 211123335788999999999666554 33 355555 233
Q ss_pred eeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 139 TVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 139 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
....+. .....+..++++|++. ++++...++.|.+|+..+.............+.+++++++|+++++...++.|.+|
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred eEeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 333333 2336789999999998 67777778899999876654433332333467889999999866666667899999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
|.......... ......+..++++++|..+++...++.|.+|+. ....... .
T Consensus 177 ~~~~~~~~~~~---~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~----~~~~~~~-~-------------------- 228 (270)
T 1rwi_B 177 EAESNNQVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA----GSTTSTV-L-------------------- 228 (270)
T ss_dssp CTTTCCEEECC---CSSCCSEEEEEECTTCCEEEEETTTSCEEEECT----TCSCCEE-C--------------------
T ss_pred ecCCCceEeec---ccCCCCceEEEECCCCCEEEEECCCCcEEEEcC----CCCccee-e--------------------
Confidence 98776654332 133367889999999977776666889999987 3222111 0
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCcee
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS 362 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 362 (612)
...+...+.++++.+ ++.++++...++.|++++....+.
T Consensus 229 -------------------------~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 229 -------------------------PFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp -------------------------CCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred -------------------------ccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 001224566777763 267888888899999998876543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-13 Score=126.09 Aligned_cols=238 Identities=10% Similarity=-0.034 Sum_probs=161.9
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC--eEEEeecCCCceee
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG--SVRIWGTHNGFVLK 95 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~--~i~iwd~~~~~~~~ 95 (612)
.....++++|+|+++++.. ++.|++||.++++....... ..... ++|+|+++.|++++.++ .|.+|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~- 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP- 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee-
Confidence 4788999999999666665 58999999998877665554 33334 99999999999888766 7889988776532
Q ss_pred eee----eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee----eccCCceE-E-EEEEcCCCCEEEEE
Q 007229 96 NEF----KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD----FDGHSRRV-L-SCEFKPTRPFRIAT 165 (612)
Q Consensus 96 ~~~----~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~v-~-~~~~~~~~~~~l~~ 165 (612)
..+ ......+.+++++|++..|+++..++ .+..++.+++..... ..++...- . .++|+|++..++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~---~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK---NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTC---EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCC---cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 122 11446788999999655666654433 344444444442221 22222222 3 99999976667888
Q ss_pred eecCCeEEEEeCCCCeeeeccccc---------------ccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeee
Q 007229 166 CGEDFLVNFYEGPPFKFKLSHREH---------------SNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 166 ~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~ 229 (612)
...++.|+.|+.... ...+.++ -.....++++|+|+++++-. .++.|+.|++.+++......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 888899999997643 2222222 13478999999999666666 78899999987776543331
Q ss_pred cc--C---------CccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 230 SE--D---------GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 230 ~~--~---------~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.. . ..-.....+++++++.++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 10 0 01245889999999887777777788887765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-13 Score=139.24 Aligned_cols=240 Identities=8% Similarity=-0.073 Sum_probs=161.8
Q ss_pred CCCceeEEEEccCCCEEEEec--C----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC---------
Q 007229 17 ERGRGILISGNPKTDTILYCN--G----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG--------- 81 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~--------- 81 (612)
+...+..++|||||++||++. + ..|++||+++++.+.. ..+......++|+ ||+.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 344688899999999999875 1 4899999999986553 1111123578999 999999888774
Q ss_pred ----eEEEeecCCCce---eeeeeee-cCCCeEEEEECCCCCEEEEEeCCCCe-eeEEEEEecCCc-eeeeeccCCceEE
Q 007229 82 ----SVRIWGTHNGFV---LKNEFKV-LSGRIDDLQWSPDGLRIVACGDGKGK-SFVRAFMWDSGT-TVGDFDGHSRRVL 151 (612)
Q Consensus 82 ----~i~iwd~~~~~~---~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~-~~i~i~~~~~~~-~~~~~~~~~~~v~ 151 (612)
.|.+|++.+... +...... |......+.|||||++|+........ ..+.+++.+++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 399999987653 2222222 44567889999999998766543221 134444444442 4556666666655
Q ss_pred EEEEcCCCCEEEEEeecC---CeEEEEeCCCCee--eecccccccceEEEEECCCCCeEEEEEcCC---cEEEEecCCCC
Q 007229 152 SCEFKPTRPFRIATCGED---FLVNFYEGPPFKF--KLSHREHSNFVNCIRFSPDGSKLISVSSDR---KGLIYDGKSGE 223 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~ 223 (612)
.. +++++..+++....+ +.|..+|+.++.. ...+..|...+. .|++++++|+....++ .|++|++..+
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 55 667777556665544 6899999987654 234455665555 8999999888776544 6889998744
Q ss_pred eeeeeeccCCccccEEEEEEecCCCEEEEEeCC----CcEEEEEe
Q 007229 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD----KSAKVWEI 264 (612)
Q Consensus 224 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~iw~~ 264 (612)
....+. ......+..+.++++++.++....+ +.+..||+
T Consensus 361 ~~~~l~--~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 361 RVREVA--LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EEEEEC--CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred eeEEee--cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 444442 1344567788888888877766554 78888887
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=125.99 Aligned_cols=175 Identities=8% Similarity=-0.010 Sum_probs=136.8
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCc----------eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEee
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPL----------HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWG 87 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~----------~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd 87 (612)
..+++.++++++..++++++...+++|+++..+ .......+.. |++++| |+++|+++ .++.|++||
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 347999999999999999998888889876433 1112334677 999999 99999999 889999999
Q ss_pred cCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee
Q 007229 88 THNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
+.+.. .......|...+.++.+.+.. ++++..++ .+.+|++..+.... +...|++++|+|+| ++.|.
T Consensus 113 v~sl~-~~~~~~~~~~~v~~i~~~~p~--~av~~~dG---~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG---~~vg~ 179 (388)
T 1xip_A 113 LEELS-EFRTVTSFEKPVFQLKNVNNT--LVILNSVN---DLSALDLRTKSTKQ----LAQNVTSFDVTNSQ---LAVLL 179 (388)
T ss_dssp SSSTT-CEEEEEECSSCEEEEEECSSE--EEEEETTS---EEEEEETTTCCEEE----EEESEEEEEECSSE---EEEEE
T ss_pred chhhh-ccCccceeecceeeEEecCCC--EEEEECCC---CEEEEEccCCcccc----ccCCceEEEEcCCc---eEEEE
Confidence 98876 344667788889998887764 77777777 45666666555543 45689999999998 57788
Q ss_pred cCCeEEEEeCCCCee--eecc------c---ccccceEEEEECCCCCeEEEEE
Q 007229 168 EDFLVNFYEGPPFKF--KLSH------R---EHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
.||++++|+...++. ..++ . +|...|.++.|.+++.++++-.
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999999887775 4444 2 3778899999999998887543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-13 Score=124.36 Aligned_cols=177 Identities=10% Similarity=-0.024 Sum_probs=136.2
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCCc---------eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGF---------VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
+++.+++++...++++|+.+ .+++|++++.. ........+.. |+.++| |+++|+++ .++ .+.+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~---~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRN---ALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESS---EEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCC---cEEE
Confidence 68999999999999999988 56669876543 11112334666 999999 99999998 444 4677
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 211 (612)
|+..+.........|...+.++.+.+.. +++++.||.+.+||++++.... +...|+|++|||+| ++.|..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 7766555555667778888888877652 8888999999999999887653 45689999999999 6789999
Q ss_pred CcEEEEecCCCCe--eeeeecc------CCccccEEEEEEecCCCEEEEEe
Q 007229 212 RKGLIYDGKSGEK--IGEFSSE------DGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 212 g~i~vwd~~~~~~--~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
|++++|+...++. ..++..+ .+|...|.+++|.+++.++++-.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999887774 4444211 13678899999999998887643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-08 Score=99.18 Aligned_cols=527 Identities=10% Similarity=-0.010 Sum_probs=267.3
Q ss_pred CCEEEEecCCEEEEEeCCCCc-eeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCCCceeeeeeeecCCCeEE
Q 007229 30 TDTILYCNGRSVLIRYLDKPL-HVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHNGFVLKNEFKVLSGRIDD 107 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 107 (612)
..+|+.+..+.|+..++.... ....+...-.....++|++.+..|..+. ..+.|..+++.........+...-.....
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 346788888999999998653 2222333455678999999776666554 46789999987653212223323357889
Q ss_pred EEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee-cCCeEEEEeCCCCeeeecc
Q 007229 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-EDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~ 186 (612)
+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++-- ..+.|...++.........
T Consensus 89 lAvD~~~~~ly~~d~~~~--~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETN--RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEecCCEEEEEeCCCC--EEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence 999998887777765544 3555555533322223344556789999998776566542 2467777766543322222
Q ss_pred cccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
...-.....++++++++.|+.+.. .+.|...|+... ....+.. +.......+++.++ ..+++-...+.|...|.
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-~~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~- 241 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNK- 241 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-EEC-----------CCCEEESSS-EEEEECTTTCSEEEEES-
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-ccEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEEC-
Confidence 223456789999998777776654 567888887643 3333311 11222346677654 33333334577888876
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
.+++....+......+ ..|.++................+....++...+.......
T Consensus 242 ---~tg~~~~~i~~~~~~p---------------------~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C 297 (619)
T 3s94_A 242 ---YTGEGLREIHSDIFSP---------------------MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQC 297 (619)
T ss_dssp ---SSCCCCEECCSCCCCC---------------------SEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEE
T ss_pred ---CCCcccEEEecCCCCC---------------------cEEEEEccccCCCccccccCCCCcccceEECCCCCCCceE
Confidence 5555443332211000 1222332110000000011111223333333111111112
Q ss_pred EecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCcc-ceeccCCCcceeeecCCCC
Q 007229 346 SSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDA-EHIDVGSQPLDLSLALSSP 424 (612)
Q Consensus 346 ~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 424 (612)
.+.+|... ......|......+|+. +..+.|+..++........ ........+..+++.+.+.
T Consensus 298 ~C~~g~~l---------------~~d~~~C~~~~~~~Ll~-~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~ 361 (619)
T 3s94_A 298 ACPTGVKL---------------LENGKTCKDGATELLLL-ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 361 (619)
T ss_dssp ECCTTCCB---------------CTTSSCBCSSCSEEEEE-EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTT
T ss_pred eCCchhee---------------cccCcccCCCCceEEEE-EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCC
Confidence 22222211 00111111111222332 2344666666665443211 1112223456677777666
Q ss_pred cEEEEEee-ccEEEee-cccceeee-c-ccceEEEEEEccCCCeEE-EEecCCeEEEEEccCcccccceeeccccCceEE
Q 007229 425 ELALVSTE-SGVILLD-SLKVMSKI-D-LGFTVTACAIAPDGSEAI-VGGQNGKLHIYSISGNTLTEEMVLEKHRGAITV 499 (612)
Q Consensus 425 ~~~~~~~~-~~~~~~~-~~~~~~~~-~-~~~~i~~~~~s~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~ 499 (612)
.+...... +.+..++ ++.....+ . .-..+..+++.+.++.|. +-...+.|.+.++++... .......-.....
T Consensus 362 ~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--~~l~~~~l~~P~~ 439 (619)
T 3s94_A 362 YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--KILISEDLEEPRA 439 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECTTCCSEEE
T ss_pred eEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--EEEEECCCCCeee
Confidence 77666654 3455554 22222222 1 123567899997555444 444568999999886543 1222223356789
Q ss_pred EEEcCCCcEEEEEc--CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee-cCcEEEEEEccCCCcceeee
Q 007229 500 IQYSPDVSMFASAD--GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS-IDTCVIIYEIGKPASSRITI 576 (612)
Q Consensus 500 ~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~ 576 (612)
|++.|...+|..+. ....|...++...... ......-...+.|++++++..|..+. ..+.|...++.... . ...
T Consensus 440 iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~-~-~~~ 516 (619)
T 3s94_A 440 IVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG-R-RVL 516 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-C-EEE
T ss_pred EEEEcCCCcEEEecCCCCCEEEEEccCCCccE-EEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc-e-EEE
Confidence 99999644544443 2367777777654332 22222345678999998777666554 45789999987633 2 222
Q ss_pred ecccccCeeeEEEecCceEEEccCCCeEEEEE
Q 007229 577 KNAHLGGVYGVAFMDDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 577 ~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~ 608 (612)
+........+|+...+...++-...+.|..-+
T Consensus 517 ~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~ 548 (619)
T 3s94_A 517 VEDKIPHIFGFTLLGDYVYWTDWQRRSIERVH 548 (619)
T ss_dssp EECCCCSSCCEEEETTEEEEECTTSSCEEEEE
T ss_pred eccCCCCcEEEEEECCEEEEeecCCCeEEEEE
Confidence 22222233455554333344433444444433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-12 Score=117.32 Aligned_cols=291 Identities=9% Similarity=-0.086 Sum_probs=174.1
Q ss_pred EEEEeecCC----eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEEecCCCCeeee
Q 007229 162 RIATCGEDF----LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 162 ~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~ 227 (612)
..++...++ .|.+.|..+++.+.++.....+ .++++||+++++++. .++.|.+||+.+++.+.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 455555555 8889999999999988755555 799999999999886 368899999999999999
Q ss_pred eeccCCc----cccEEEEEEecCCCEEEEEeC--CCcEEE--EEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEE
Q 007229 228 FSSEDGH----HGSIYAVSWSPDGKKVLTVSA--DKSAKV--WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHL 299 (612)
Q Consensus 228 ~~~~~~~----~~~v~~i~~~~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (612)
+....+. ......++++|||++++++.. +..+.+ +|. .+ +..+....
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~----~t---v~~i~v~~------------------ 166 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA----SD---DQLTKSAS------------------ 166 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT----EE---EEEEECSS------------------
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEch----hh---ceEEECCC------------------
Confidence 8432100 123558899999999998875 356888 887 33 23322110
Q ss_pred EEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC-----ceeee----eceecc
Q 007229 300 ITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV-----GYSSK----LEKKYD 370 (612)
Q Consensus 300 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-----~~~~~----~~~~~~ 370 (612)
. ....+.....+++.+.||.+.+.|... ++... ......
T Consensus 167 -----------------------------~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~ 214 (368)
T 1mda_H 167 -----------------------------C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp -----------------------------C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred -----------------------------c---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence 0 001111144555666677777777765 32221 011012
Q ss_pred cceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeeccc
Q 007229 371 ARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLG 450 (612)
Q Consensus 371 ~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (612)
.+. . ..+++.++..+. +.+.+.|................. ........+
T Consensus 215 ~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~----------------------------~~~~~~~~p 263 (368)
T 1mda_H 215 QAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNES----------------------------GRKADNFRS 263 (368)
T ss_dssp CCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCT----------------------------HHHHTTEEE
T ss_pred Ccc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccc----------------------------ccccccccc
Confidence 222 2 224444444444 777777765432110000000000 000000001
Q ss_pred ceEEEEEEccCCCeEEEEec-C--------CeEEEEEccCcccccceeeccccCceEEEEEcCCCcE-EEEEc-CCCeEE
Q 007229 451 FTVTACAIAPDGSEAIVGGQ-N--------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSM-FASAD-GNREAI 519 (612)
Q Consensus 451 ~~i~~~~~s~~~~~l~~~~~-d--------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~-~d~~i~ 519 (612)
.....++++||++.++++.. + +.+.++|+.+.+. ...+.... ....++|+|||++ +++.. .++.|.
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEE
Confidence 11222689999998887654 2 3567999999887 34443322 5788999999984 55555 589999
Q ss_pred EEecCCcceeeecccccccceeEEEecC
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSP 547 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~ 547 (612)
++|+.+++.+.. +.. ......+++.+
T Consensus 341 VID~~t~kvv~~-I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 341 IYDAASDQDQSS-VEL-DKGPESLSVQN 366 (368)
T ss_dssp EEESSSCEEEEE-CCC-CSCCCEEECCC
T ss_pred EEECCCCcEEEE-EEC-CCCCCEEEeec
Confidence 999999998743 332 23344555543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.5e-12 Score=113.51 Aligned_cols=263 Identities=7% Similarity=-0.064 Sum_probs=170.2
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEeecCCCceeeeeeeec-------C
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWGTHNGFVLKNEFKVL-------S 102 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~-------~ 102 (612)
.|.+.|.++++.+..+.....+ .++++|||++|.++. .++.|.+||..+++. ...+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8899999999999888655555 799999999998885 478899999999984 4455433 1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC---
Q 007229 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP--- 179 (612)
Q Consensus 103 ~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--- 179 (612)
.....++|+|||++|+++...... .+.+-.+|... +..+.--.. ..+.|+++..+++.+.|+.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~-~v~V~~iD~~t-v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSA-AAGLSVPGASD-DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSC-EEEEEETTTEE-EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCC-eEEEEEEchhh-ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 346789999999999988653211 23442266544 444432111 223455554566777788888888876
Q ss_pred --Ceeee----cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC--eeeeeeccC-------CccccEEEEEEe
Q 007229 180 --FKFKL----SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE--KIGEFSSED-------GHHGSIYAVSWS 244 (612)
Q Consensus 180 --~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~-------~~~~~v~~i~~~ 244 (612)
++... .+.-...+. . ++++..++..+. +.+.+.|..++. .+..+.... ........++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 44331 111122333 3 566666666677 999999986543 222221100 001111226899
Q ss_pred cCCCEEEEEeC-C--------CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCC
Q 007229 245 PDGKKVLTVSA-D--------KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 245 ~~~~~l~~~~~-d--------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
|+++.++++.. . +.+.++|+ .+.+.+..+....
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~----~t~~vv~~i~vg~---------------------------------- 314 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTA----SVGQTSGPISNGH---------------------------------- 314 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEES----SSCCEEECCEEEE----------------------------------
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEEC----CCCeEEEEEECCC----------------------------------
Confidence 99998887543 2 35669999 7887776654331
Q ss_pred CCCCceeecCcccceeEEEEEecCCcEEEEEe-cCCcEEEEEcCCceeeeece
Q 007229 316 LDKAPLSFSGHVKNVSTLTALKISQQTILSSS-YDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 316 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~ 367 (612)
....+.+++.+...+++.. .++.|.++|+.+.+......
T Consensus 315 -------------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 315 -------------DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp -------------EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred -------------CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 3566777743344667776 58999999999988776554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-11 Score=110.86 Aligned_cols=245 Identities=8% Similarity=0.052 Sum_probs=159.3
Q ss_pred cCcccceeEEEEEecCCcEEEE-------EecCCcEEEEEcCCceeeeece----ecccceEEEEeec--cEEEEecCCC
Q 007229 324 SGHVKNVSTLTALKISQQTILS-------SSYDGAIIKWIRGVGYSSKLEK----KYDARIKCLAAVE--EVIFTAGFDN 390 (612)
Q Consensus 324 ~~~~~~v~~~~~~~~~~~~l~~-------~~~dg~i~~wd~~~~~~~~~~~----~~~~~i~~~~~~~--~~l~~~~~~~ 390 (612)
........+++|. .++.++++ +..++.|..||..+++...... .+...+.++.++. +.++.+...+
T Consensus 14 ~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp ECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred hccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 3344456778887 33666666 5778999999987776544322 1335677787732 4555555555
Q ss_pred eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec
Q 007229 391 KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ 470 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 470 (612)
.+..|+.. +...... ..... ......+.+++++++|+++++...
T Consensus 93 ~l~~~d~~-g~~~~~~-~~~~~----------------------------------~~~~~~~~~i~~d~~g~l~v~~~~ 136 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIA-KKDSE----------------------------------GRRMQGCNDCAFDYEGNLWITAPA 136 (314)
T ss_dssp EEEEEETT-SCEEECC-SBCTT----------------------------------SCBCBCCCEEEECTTSCEEEEECB
T ss_pred CEEEEeCC-CCEEEEE-eccCC----------------------------------CccccCCcCEEECCCCCEEEEecC
Confidence 78888876 3321000 00000 001124678999999988777655
Q ss_pred C---------------CeEEEEEccCcccccceeeccccCceEEEEEc----CCCcEEEE-EcCCCeEEEEecC-Ccce-
Q 007229 471 N---------------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYS----PDVSMFAS-ADGNREAIVWDRV-SKEV- 528 (612)
Q Consensus 471 d---------------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~-~~~d~~i~iwd~~-~~~~- 528 (612)
+ +.|..|+.. ++. ..+..+......++++ |+++.|.. ...++.|.+||+. +++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 137 GEVAPADYTRSMQEKFGSIYCFTTD-GQM---IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE 212 (314)
T ss_dssp CBCTTSCCCBTTSSSCEEEEEECTT-SCE---EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred cccccccccccccCCCCeEEEECCC-CCE---EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc
Confidence 4 567777765 443 2222334456889999 99976544 4567899999986 3432
Q ss_pred ---eeecccccc-cceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCce-EEEccCCC
Q 007229 529 ---KLNNMLFHT-ARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFN-VVSSGEDA 602 (612)
Q Consensus 529 ---~~~~~~~~~-~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~~~d~ 602 (612)
....+..+. ..+..++++++|+++++...++.|.+||.++ + +.+..+..+...+.+++|+ +++. +++...++
T Consensus 213 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 213 NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-G-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-B-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-C-cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCC
Confidence 112233333 5678899999999888877888999999885 3 4555556666789999999 7774 45556678
Q ss_pred eEEEEEecc
Q 007229 603 CIRVWRLAT 611 (612)
Q Consensus 603 ~i~~w~~~~ 611 (612)
.|..|+++.
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 899998764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-11 Score=114.20 Aligned_cols=275 Identities=10% Similarity=0.043 Sum_probs=165.8
Q ss_pred cceEEEEECCCCCeEEEEEc--CCcEEEEecCCCCeeeeeec----cCCccccEEEEEEecCCCEEEEEeC-----CCcE
Q 007229 191 NFVNCIRFSPDGSKLISVSS--DRKGLIYDGKSGEKIGEFSS----EDGHHGSIYAVSWSPDGKKVLTVSA-----DKSA 259 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~~~~~-----dg~i 259 (612)
..+..++++|+|+.+++... ++.++||.+.+++. ..+.. ...+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998877542 34355666555543 32211 1134568999999999886665433 5789
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
.+||+ .+++.+..+..... ...+...+..+++.+.+
T Consensus 96 ~~~d~----~tg~~~~~~~~~~~----------------------------------------~~~~~~~~~~v~vd~~~ 131 (343)
T 2qe8_A 96 VAWDT----LNNQLSRVIYLPPP----------------------------------------ITLSNSFVNDLAVDLIH 131 (343)
T ss_dssp EEEET----TTTEEEEEEECCTT----------------------------------------TSCTTCCCCEEEEETTT
T ss_pred EEEEC----CCCeEEEEEECChh----------------------------------------hcccccccceEEEecCC
Confidence 99998 77776666543210 00122345677776333
Q ss_pred CcEEEEEe---cCCcEEEEEcCCceeeeeceecccce---EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCC
Q 007229 340 QQTILSSS---YDGAIIKWIRGVGYSSKLEKKYDARI---KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413 (612)
Q Consensus 340 ~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~i---~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 413 (612)
+..+++.. .++.|.+||..+++.......|.... ..+.+++..+.+...++.+..|.
T Consensus 132 g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~----------------- 194 (343)
T 2qe8_A 132 NFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH----------------- 194 (343)
T ss_dssp TEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------
T ss_pred CEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-----------------
Confidence 44555555 67899999998776555432111100 11122333333333444333321
Q ss_pred cceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC-eEEEEEccC---cc-----c
Q 007229 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-KLHIYSISG---NT-----L 484 (612)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~v~i~d~~~---~~-----~ 484 (612)
..+..++++||++.|+++..++ .++.++... +. .
T Consensus 195 -------------------------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 195 -------------------------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp -------------------------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred -------------------------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 1357899999999998887766 555555321 11 0
Q ss_pred ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEE
Q 007229 485 TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564 (612)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iw 564 (612)
.......++.+....++++++|.++++...++.|.+||.++++........+...+.+++|.++++++++.+..+.+.+|
T Consensus 238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 238 GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 00011223445667899999999999999999999999855554311111124568899999999888777655444333
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-08 Score=94.98 Aligned_cols=493 Identities=9% Similarity=-0.079 Sum_probs=259.8
Q ss_pred CCceeEEEEccCCCEEEEec--CCEEEEEeCCCCce-eeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLH-VEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~ 93 (612)
-+.+.+++|++.+..|..+. .+.|..++++.... ...+...-.....+++.+.++.|. +-...+.|.+.++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~- 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL- 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-
Confidence 34678999999888888776 58999999886532 333443336788999999665554 44567899999998764
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-eccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-FDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
........-.....+++.|.+.+|..+...... .|....++ |..... ....-.....++++++++.+.++-...+.|
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~-~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I 195 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP-KIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTTTEEEEEECSSSC-EEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEEeCCCCCCceEEEecCCCeEEEeccCCCC-EEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence 222232344567899999987666665533211 23333333 332222 223445678999999877666666677889
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEE-ecCCCEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW-SPDGKKV 250 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l 250 (612)
...|+..........+.......|++.++ .|+.+. ..+.|...|..+++....+.. .......+++ +|..+--
T Consensus 196 ~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~---~~~~p~~i~v~~~~~qp~ 270 (619)
T 3s94_A 196 HKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHS---DIFSPMDIHAFSQQRQPN 270 (619)
T ss_dssp EEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCS---CCCCCSEEEECCGGGSCC
T ss_pred EEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEec---CCCCCcEEEEEccccCCC
Confidence 99998765443333322233456777655 455443 467899999888876655521 1112233333 2211000
Q ss_pred E-EEeC-----CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec
Q 007229 251 L-TVSA-----DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS 324 (612)
Q Consensus 251 ~-~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (612)
. -.+. =..+++-... .....+. ..........-..|....+.++..+..+.|+..++.........+.
T Consensus 271 ~~n~C~~~ng~Cs~lCl~~~~--~~~~~C~----C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~ 344 (619)
T 3s94_A 271 ATNPCGIDNGGCSHLCLMSPV--KPFYQCA----CPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ 344 (619)
T ss_dssp CCCTTTTTGGGCSSEEEECSS--TTSEEEE----CCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECC
T ss_pred ccccccCCCCcccceEECCCC--CCCceEe----CCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEe
Confidence 0 0000 0112221110 0000000 0000000000011222234445555667788888766543322222
Q ss_pred -CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEee---ccEEEEecCCCeEEEEecCCC
Q 007229 325 -GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAV---EEVIFTAGFDNKVWRVPLCEG 400 (612)
Q Consensus 325 -~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~~~~i~~~~~~~~ 400 (612)
.....+.++++...++.++++-...+.|+.+++.......+....-.....++++ ++..++-...+.|.+.++...
T Consensus 345 ~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp CSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 1234566777774445666666678889999887654433332222345566663 344455556667777776543
Q ss_pred CCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec--CCeEEEEE
Q 007229 401 ECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ--NGKLHIYS 478 (612)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~v~i~d 478 (612)
... . +.. ..-.....+++.|...+|+.... .+.|...+
T Consensus 425 ~~~---~-----------------------------l~~--------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~ 464 (619)
T 3s94_A 425 MRK---I-----------------------------LIS--------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAA 464 (619)
T ss_dssp SCE---E-----------------------------EEC--------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred eEE---E-----------------------------EEE--------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEc
Confidence 211 0 000 01124678899987555555443 36777777
Q ss_pred ccCcccccceeeccccCceEEEEEcCCCcEEEEE-cCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeec
Q 007229 479 ISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA-DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557 (612)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 557 (612)
++.... .......-...+.|++++++..|..+ ...+.|...++...... ......-.....++...+ .+..+-..
T Consensus 465 ~dG~~~--~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~l~~P~glav~~~-~ly~tD~~ 540 (619)
T 3s94_A 465 LDGSDR--VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR-VLVEDKIPHIFGFTLLGD-YVYWTDWQ 540 (619)
T ss_dssp TTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEEECCCCSSCCEEEETT-EEEEECTT
T ss_pred cCCCcc--EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE-EEeccCCCCcEEEEEECC-EEEEeecC
Confidence 765443 11222223467889999866666555 45578999998655432 111111222345555433 33333334
Q ss_pred CcEEEEEEccC
Q 007229 558 DTCVIIYEIGK 568 (612)
Q Consensus 558 d~~i~iwd~~~ 568 (612)
.+.|...|..+
T Consensus 541 ~~~I~~~~k~~ 551 (619)
T 3s94_A 541 RRSIERVHKRS 551 (619)
T ss_dssp SSCEEEEESSS
T ss_pred CCeEEEEEcCC
Confidence 45566555554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-12 Score=113.29 Aligned_cols=224 Identities=9% Similarity=0.038 Sum_probs=148.4
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
.....+|+|+|+.|++.. ++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. ++ ....
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~ 121 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLL 121 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEE
Confidence 445789999999655554 689999998 444 34455677789999999999987776666889999986 44 2211
Q ss_pred eeec----CCCeEEEEECCCCCEEEE----EeCCC--------CeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCC
Q 007229 98 FKVL----SGRIDDLQWSPDGLRIVA----CGDGK--------GKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTR 159 (612)
Q Consensus 98 ~~~~----~~~i~~~~~s~~~~~l~~----~~~~~--------~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 159 (612)
.... ...+..+++.|+|+.+++ +.... ......|+.++ +++... +. .......++|+|++
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~-~~-~~~~p~gl~~spdg 199 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-MA-DLDHPNGLAFSPDE 199 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE-EE-EESSEEEEEECTTS
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE-Ee-cCCCCcceEEcCCC
Confidence 1111 134678999999998876 22110 00013567776 344333 22 44556789999999
Q ss_pred CEEEEEeecC------CeEEEEeCCCCeee--ecc-cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 160 PFRIATCGED------FLVNFYEGPPFKFK--LSH-REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 160 ~~~l~~~~~d------~~i~~wd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
+. |+.+... +.|.+|++...... ..+ .........+++.++|+ |.+++.+ .|.+|+. +++.+..+..
T Consensus 200 ~~-lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~ 275 (305)
T 3dr2_A 200 QT-LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPT 275 (305)
T ss_dssp SE-EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEEC
T ss_pred CE-EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEEC
Confidence 95 4444443 78999998754411 111 11233456789999998 4444544 5999997 5777777732
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
...+.+++|.++++.|..++.++
T Consensus 276 ----~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 276 ----PGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ----SSCCCEEEECTTSCEEEEEETTE
T ss_pred ----CCceeEEEEeCCCCEEEEEcCCe
Confidence 22578899999998888887654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-11 Score=111.20 Aligned_cols=301 Identities=11% Similarity=-0.013 Sum_probs=173.7
Q ss_pred EEEEeecCCeEEEEeCCCCeeeeccccc---------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREH---------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 232 (612)
.++.++.++.|..+|..+++.+...... ...+.+. ...++..+++++.++.|..+|.++|+.+.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 5788888999999999999987665432 1223222 12245678888999999999999999887663221
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEE
Q 007229 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFS 312 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 312 (612)
. ........ +..+++++.++.+..+|. .+++.+-.+..................++.+++++.++.+..+|
T Consensus 134 ~---~~~~p~~~--~~~v~v~~~~g~l~~~d~----~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 134 E---ALSRPVVS--DGLVLIHTSNGQLQALNE----ADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp C---CCSCCEEE--TTEEEEECTTSEEEEEET----TTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEE
T ss_pred c---eEcCCEEE--CCEEEEEcCCCeEEEEEC----CCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEE
Confidence 1 11111222 346777888999999999 88888877665432110001122223367888888899999999
Q ss_pred cCCCCCCceeecCcccc---------eeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEE
Q 007229 313 ASNLDKAPLSFSGHVKN---------VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVI 383 (612)
Q Consensus 313 ~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l 383 (612)
..+.............. +....... +..++.++.++.+..+|..+++.....
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~~g~l~~~d~~tG~~~w~~----------------- 265 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALAYNGNLTALDLRSGQIMWKR----------------- 265 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEECTTSCEEEEETTTCCEEEEE-----------------
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEecCcEEEEEECCCCcEEeec-----------------
Confidence 76543322211110000 00000011 344444445555555555443321110
Q ss_pred EEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCC
Q 007229 384 FTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGS 463 (612)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 463 (612)
. . .....+.. ++.
T Consensus 266 --------------~--------------------------------------------------~-~~~~~~~~--~~~ 278 (376)
T 3q7m_A 266 --------------E--------------------------------------------------L-GSVNDFIV--DGN 278 (376)
T ss_dssp --------------C--------------------------------------------------C-CCEEEEEE--ETT
T ss_pred --------------c--------------------------------------------------C-CCCCCceE--ECC
Confidence 0 0 00112222 356
Q ss_pred eEEEEecCCeEEEEEccCcccccceeec-cccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeE
Q 007229 464 EAIVGGQNGKLHIYSISGNTLTEEMVLE-KHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC 542 (612)
Q Consensus 464 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 542 (612)
.+++++.++.+..+|..+++.. .... .....+..... .+..|+.++.+|.+..+|..+++.+..... ....+.+
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~-~~~~~~~ 353 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTL--WTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV-DSSGFQT 353 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEE--EEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CTTCBCS
T ss_pred EEEEEcCCCeEEEEECCCCcEE--EeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCccee
Confidence 7777888889999999888762 2222 11122222233 345788888999999999999988644322 2223322
Q ss_pred -EEecCCCcEEEEeecCcEEEEEE
Q 007229 543 -LAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 543 -~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
... .+..|+.++.+|.++.|+
T Consensus 354 ~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 354 EPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCEE--ECCEEEEEeCCCEEEEEe
Confidence 222 244677888899999887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-10 Score=109.86 Aligned_cols=202 Identities=10% Similarity=-0.031 Sum_probs=133.8
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CC
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SG 137 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~ 137 (612)
.....++|+++|+++++...++.|++||..++. +..... ...... ++|+|+++.|+++..++.. .++.++ .+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-~~~~~~-~~~~~~-ia~~~~g~~l~~~d~~~~~---~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-VTTVHP-GFKGGK-PAVTKDKQRVYSIGWEGTH---TVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-EEEEEE-TCCBCB-CEECTTSSEEEEEBSSTTC---EEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-EEEeec-cCCCCc-eeEecCCCcEEEEecCCCc---eEEEEEcCCC
Confidence 367899999999988888788999999999876 332332 233344 9999999999888775532 355555 33
Q ss_pred ceeeee----ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec----ccccccce--EEEEECCC-CCeEE
Q 007229 138 TTVGDF----DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS----HREHSNFV--NCIRFSPD-GSKLI 206 (612)
Q Consensus 138 ~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~v--~~~~~s~~-~~~l~ 206 (612)
.....+ ......+.+++++|++..+++ +..++.|+.||..++..... ..++...- ..++|+|+ +.+++
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 333333 225567789999996554444 66788999999987754332 22222222 39999996 44444
Q ss_pred EEEcCCcEEEEecCCCCeeeeeecc--C---------CccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCee
Q 007229 207 SVSSDRKGLIYDGKSGEKIGEFSSE--D---------GHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 207 ~~~~dg~i~vwd~~~~~~~~~~~~~--~---------~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 273 (612)
+-..++.|+.|+... +........ . ..-.....++++|+|+++++-. .++.|+.|++ .++..
T Consensus 284 ~d~~~~~I~~~~~~g-~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~----~~G~v 357 (409)
T 3hrp_A 284 SDQNLSSVYKITPDG-ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI----LDGYV 357 (409)
T ss_dssp EETTTTEEEEECTTC-CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET----TTTEE
T ss_pred EeCCCCEEEEEecCC-CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC----CCCEE
Confidence 445578899998653 322222100 0 0123478999999999777766 7889999997 55543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-12 Score=126.48 Aligned_cols=199 Identities=9% Similarity=0.086 Sum_probs=132.1
Q ss_pred cCCCceEEEEECCCCCEEEE-----eeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC------
Q 007229 57 EHGYPVTVARYSPNGEWIAS-----ADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG------ 125 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~------ 125 (612)
+|...+..++|||||++||. |+...+|++||+.+++.+...+.. .....++|+ ||+.|+.+..+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 46678999999999999994 334467999999999854332222 123578999 9999999887642
Q ss_pred --eeeEEEEEec--CCc----eeeeecc-CCceEEEEEEcCCCCEEEEEeecC---CeEEEEeCCCCe-eeecccccccc
Q 007229 126 --KSFVRAFMWD--SGT----TVGDFDG-HSRRVLSCEFKPTRPFRIATCGED---FLVNFYEGPPFK-FKLSHREHSNF 192 (612)
Q Consensus 126 --~~~i~i~~~~--~~~----~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~-~~~~~~~~~~~ 192 (612)
...-+||.|+ ++. .+..... |......+.|+|||++++++.+.+ ..|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 1122455555 332 3333444 556678899999999866665533 589999987763 33345555555
Q ss_pred eEEEEECCCCCeEEEEEc-C---CcEEEEecCCCCe--eeeeeccCCccccEEEEEEecCCCEEEEEeCCC---cEEEEE
Q 007229 193 VNCIRFSPDGSKLISVSS-D---RKGLIYDGKSGEK--IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK---SAKVWE 263 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~-d---g~i~vwd~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~i~iw~ 263 (612)
.... ++++|..|+..+. + +.|..+|+.++.. ...+. .+...+. .|++++++|+....++ .|++|+
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 5554 6677776665554 2 5799999988764 23331 3444444 8899898887766543 577777
Q ss_pred e
Q 007229 264 I 264 (612)
Q Consensus 264 ~ 264 (612)
+
T Consensus 357 ~ 357 (693)
T 3iuj_A 357 Y 357 (693)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.5e-11 Score=110.38 Aligned_cols=304 Identities=8% Similarity=-0.003 Sum_probs=188.6
Q ss_pred CCCEEEEeeCcCeEEEeecCCCceeeeeeeec--------CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceee
Q 007229 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVL--------SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVG 141 (612)
Q Consensus 70 d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~ 141 (612)
++..|..++.++.|..+|..+++.+....... ...+... ...++..+++++.++ .+..++.++|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g---~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKA---QVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTS---EEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCC---EEEEEECCCCCEEE
Confidence 35677777788999999999998543222111 1222222 222455666666665 35555666888887
Q ss_pred eeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccce-----EEEEECCCCCeEEEEEcCCcEEE
Q 007229 142 DFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFV-----NCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 142 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
............... ++ .++.++.++.|..+|..+++.+.......... ...... +..++.++.++.+..
T Consensus 128 ~~~~~~~~~~~p~~~-~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 128 QTKVAGEALSRPVVS-DG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp EEECSSCCCSCCEEE-TT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred EEeCCCceEcCCEEE-CC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 766543322222222 33 58888899999999999999887654332111 112222 446788888999999
Q ss_pred EecCCCCeeeeeeccCCccc-cEEE---EEEec--CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 217 YDGKSGEKIGEFSSEDGHHG-SIYA---VSWSP--DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~-~v~~---i~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
+|..+|+.+........... .+.. +.-.| .+..++.++.++.+..+|. .+++.+-...... ..
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~----~tG~~~w~~~~~~-------~~ 271 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL----RSGQIMWKRELGS-------VN 271 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET----TTCCEEEEECCCC-------EE
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC----CCCcEEeeccCCC-------CC
Confidence 99999998877632111000 0000 00111 2456777788999999999 8888776554321 22
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYD 370 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 370 (612)
.....++.+++++.++.+..+|..+.......-............. +..++.++.+|.+..+|..+++.........
T Consensus 272 ~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~ 348 (376)
T 3q7m_A 272 DFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQKVDS 348 (376)
T ss_dssp EEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCT
T ss_pred CceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 3444588999999999999999776544322211112222222222 6788899999999999999988766544322
Q ss_pred cceE-EEEeeccEEEEecCCCeEEEEe
Q 007229 371 ARIK-CLAAVEEVIFTAGFDNKVWRVP 396 (612)
Q Consensus 371 ~~i~-~~~~~~~~l~~~~~~~~i~~~~ 396 (612)
..+. .....++.++.++.+|.+..|+
T Consensus 349 ~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 349 SGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 3332 2334688899999999998886
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-10 Score=100.96 Aligned_cols=211 Identities=11% Similarity=0.059 Sum_probs=135.5
Q ss_pred eccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEE
Q 007229 55 YGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~ 133 (612)
+..+..--.+..|+|+ +.++++...++.|..||..+++. ........+.+++++|+|+++++ ..+ .+.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~dG~l~v~-~~~----~l~~~d 79 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRVTMDAPVSSVALRQSGGYVAT-IGT----KFCALN 79 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEECSSCEEEEEEBTTSSEEEE-ETT----EEEEEE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEEeCCCceEEEEECCCCCEEEE-ECC----eEEEEE
Confidence 3344455668999995 45666666789999999998763 22335678999999999995554 433 245555
Q ss_pred ecCCceeeeecc----CCceEEEEEEcCCCCEEEEEeec---------CCeEEEEeCCCCeeeecccccccceEEEEECC
Q 007229 134 WDSGTTVGDFDG----HSRRVLSCEFKPTRPFRIATCGE---------DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200 (612)
Q Consensus 134 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 200 (612)
+++++....... ....+..++++|+|+. +++... ...-.+|.+........+..+......++|+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECT
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcC
Confidence 555554322221 2356889999999984 554322 12234444432222222333445578999999
Q ss_pred CCCeEEEE-EcCCcEEEEec--CCCCee--eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEe
Q 007229 201 DGSKLISV-SSDRKGLIYDG--KSGEKI--GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 201 ~~~~l~~~-~~dg~i~vwd~--~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 275 (612)
|++.|+.+ +.++.|.+|++ .++... ..+.........+..++++++|++.++....+.|..||. .+++.+.
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~----~tG~~~~ 234 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP----VTGKRLQ 234 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT----TTCCEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC----CCceEEE
Confidence 99977554 44788999987 455432 112111233456789999999987777777788999998 6677766
Q ss_pred eee
Q 007229 276 TFA 278 (612)
Q Consensus 276 ~~~ 278 (612)
.+.
T Consensus 235 ~i~ 237 (297)
T 3g4e_A 235 TVK 237 (297)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-07 Score=96.74 Aligned_cols=558 Identities=11% Similarity=0.099 Sum_probs=294.9
Q ss_pred eEEEEccCCCEEEEec---CCEEEEEeCCCC------ceeeEeccCCCceEEEEECCC----CCEEEEe---eCcCeEEE
Q 007229 22 ILISGNPKTDTILYCN---GRSVLIRYLDKP------LHVEFYGEHGYPVTVARYSPN----GEWIASA---DVSGSVRI 85 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~---~~~i~i~~~~~~------~~~~~~~~h~~~v~~~~~s~d----~~~las~---~~d~~i~i 85 (612)
+++++-.+| +|+.|+ |+.++-|+.... +.+..+. .-++|..++.... ...|+++ +.+|.+++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~ 407 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEE
Confidence 567777766 556665 334444443221 2233333 4578888887542 1244433 36788888
Q ss_pred eecCCCceeeeeee-ecCCCeEEEEEC---CCCCEEEEEeCCCCeeeEEEEEecCCceeeeec--cC---CceEEEEEEc
Q 007229 86 WGTHNGFVLKNEFK-VLSGRIDDLQWS---PDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD--GH---SRRVLSCEFK 156 (612)
Q Consensus 86 wd~~~~~~~~~~~~-~~~~~i~~~~~s---~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~---~~~v~~~~~~ 156 (612)
..-.-+-.....+. ..-..++.+... +...+|+....+.. .|...+ ++.+.... +- ...+.+-.+
T Consensus 408 lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T----~Vl~i~-~e~veev~~~gf~~~~~TL~~~~l- 481 (1158)
T 3ei3_A 408 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT----RVLMLN-GEEVEETELMGFVDDQQTFFCGNV- 481 (1158)
T ss_dssp EEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE----EEEEEE-TTEEEEECCTTCCSSSCEEEEEEE-
T ss_pred EecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe----EEEEEe-CCcccccccccccCCCCcEEEEEc-
Confidence 75443221111111 112345555433 23457766655542 233332 22222221 11 111111111
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeeccccc-ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH-SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 235 (612)
+++ .++=... ..|++.+......+..+... ...|...+.+ +.+++.++ .+.+..+++..++... ... ....
T Consensus 482 ~~~--~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~-~~~-~~l~ 553 (1158)
T 3ei3_A 482 AHQ--QLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQ-ISH-TEME 553 (1158)
T ss_dssp TTT--EEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEE-EEE-EECS
T ss_pred CCC--eEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceee-ecc-cCCC
Confidence 222 2332222 23667776554445444432 2356666655 34666665 6788888887654322 211 1345
Q ss_pred ccEEEEEEecC------CCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCE
Q 007229 236 GSIYAVSWSPD------GKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGI 307 (612)
Q Consensus 236 ~~v~~i~~~~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 307 (612)
..|.++++.|. ++++++|.. |++++++++ ...+.+........... ..+....+. ..++.+|-.+|.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL----~~l~~~~~~~L~~~~~p-~si~l~~~~~~~~L~igl~dG~ 628 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL----PSFELLHKEMLGGEIIP-RSILMTTFESSHYLLCALGDGA 628 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET----TTCCEEEEEECCSSCCE-EEEEEEEETTEEEEEEEETTSE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC----CCCCeEEEEECCCCCCC-cEEEEEEeCCCcEEEEEeCCCe
Confidence 67999999863 468999986 999999999 66565554443321111 122222222 457888899999
Q ss_pred EEEEEcCCCCCCce----eecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-----
Q 007229 308 ISIFSASNLDKAPL----SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA----- 378 (612)
Q Consensus 308 i~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~----- 378 (612)
+..+.+........ ...| ..++.-..+...+...+++.+ +....++..+.. .. ........+..++.
T Consensus 629 l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~-l~-~s~l~~~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 629 LFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHK-LV-FSNVNLKEVNYMCPLNSDG 704 (1158)
T ss_dssp EEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSS-EE-EEEBSSSCCCEEEEECCSS
T ss_pred EEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCc-eE-EeccChHHhceEeccCccc
Confidence 88777553221111 1222 234433333322222333333 444444443322 11 11112223333333
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeec-------------------------
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES------------------------- 433 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 433 (612)
.++-++..+ ++.+++..+.+........+.....+..++++|..+.+++.....
T Consensus 705 ~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 705 YPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp STTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred CCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 133444444 445888887665544455667777888888888776655544321
Q ss_pred ------------------------cEEEee--cccceeeec--ccceEEEEEE---ccC-CCeEEEEe----------cC
Q 007229 434 ------------------------GVILLD--SLKVMSKID--LGFTVTACAI---APD-GSEAIVGG----------QN 471 (612)
Q Consensus 434 ------------------------~~~~~~--~~~~~~~~~--~~~~i~~~~~---s~~-~~~l~~~~----------~d 471 (612)
.+.+++ +.+.+..++ ....+.+++. ..+ ..++++|+ ..
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 122333 222222222 3444555553 322 47888886 35
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcE
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTM 551 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 551 (612)
|.|++|++..+++..... ...++++++++-- +|++||.. ..++++|++...+.+..... +-..|..+.....+++
T Consensus 864 Gri~vf~v~~~kL~lv~~-~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~-~~~~i~~~~l~~~~~~ 938 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQTVAE-KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECN-HYNNIMALYLKTKGDF 938 (1158)
T ss_dssp EEEEEEEEETTEEEEEEE-EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEE-ECCCSCEEEEEEETTE
T ss_pred eEEEEEEEECCEEEEEEE-EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEee-ccccEEEEEEeccCCE
Confidence 789999998665533322 2346788887743 45555544 36899999987654321111 1112333333335778
Q ss_pred EEEeecCcEEEEEEccCCCcceeeeec--ccccCeeeEEEecCceEEEccCCCeEEEEEecc
Q 007229 552 VATGSIDTCVIIYEIGKPASSRITIKN--AHLGGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 552 l~s~~~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~~ 611 (612)
++.|+.-..+.+..++... ..+..+. .+...++++.|.+...++.+..+|.|.+.+.+.
T Consensus 939 I~vgD~~~Sv~~~~y~~~~-~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 939 ILVGDLMRSVLLLAYKPME-GNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEESSBCEEEEEEETTT-TEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEEEEhhheEEEEEEEcCC-CeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 9999888888887776533 3444333 345578899998667888899999999988764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-11 Score=109.14 Aligned_cols=228 Identities=13% Similarity=0.048 Sum_probs=152.7
Q ss_pred EEc--cCCCEEEEec--CCEEEEEeCCCC----ceeeEec------c-CCCceEEEEECCCCCEEEEeeCc------CeE
Q 007229 25 SGN--PKTDTILYCN--GRSVLIRYLDKP----LHVEFYG------E-HGYPVTVARYSPNGEWIASADVS------GSV 83 (612)
Q Consensus 25 ~~s--~d~~~l~~~~--~~~i~i~~~~~~----~~~~~~~------~-h~~~v~~~~~s~d~~~las~~~d------~~i 83 (612)
.++ +++++|++.+ ++.|+|+|+.+. +..++++ . ....-..+..+||| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 347 8999999987 689999998744 5555553 1 11245567889999 77766555 789
Q ss_pred EEeecCCCceeeeeeeecCC---CeEEEEECCCCCEEEEEeCC----------------CCeeeEEEEEecCCceeeeec
Q 007229 84 RIWGTHNGFVLKNEFKVLSG---RIDDLQWSPDGLRIVACGDG----------------KGKSFVRAFMWDSGTTVGDFD 144 (612)
Q Consensus 84 ~iwd~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~~----------------~~~~~i~i~~~~~~~~~~~~~ 144 (612)
.+.|..+.+. ......... --..+.|+|+++.+++..-. .....+.+|++++++.+.++.
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9999999884 444442211 23458889999988887511 011268899998888888776
Q ss_pred cC--CceEEEEEE--cCCCCEEEEEee-----cCCeEEEEeCCCCeee--ecc--cc----------------cccceEE
Q 007229 145 GH--SRRVLSCEF--KPTRPFRIATCG-----EDFLVNFYEGPPFKFK--LSH--RE----------------HSNFVNC 195 (612)
Q Consensus 145 ~~--~~~v~~~~~--~~~~~~~l~~~~-----~d~~i~~wd~~~~~~~--~~~--~~----------------~~~~v~~ 195 (612)
-- ......+.| +|++++..+++. .+++|.+|....++.. ..+ .. -......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 53 234455655 999998777777 7788877654433211 110 00 0245788
Q ss_pred EEECCCCCeEEEEEc-CCcEEEEecCCC---CeeeeeeccCC-----c------cccEEEEEEecCCCEEEEEe
Q 007229 196 IRFSPDGSKLISVSS-DRKGLIYDGKSG---EKIGEFSSEDG-----H------HGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~-dg~i~vwd~~~~---~~~~~~~~~~~-----~------~~~v~~i~~~~~~~~l~~~~ 254 (612)
+.+||||++|+++.. .+.|.+||+... +.+..+..... | .+....++++|||++|+++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999988776 688999998633 34444422100 0 11357899999999999987
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=112.39 Aligned_cols=240 Identities=9% Similarity=-0.015 Sum_probs=151.6
Q ss_pred CceeEEEEccCCCEEEEec---CCEEEEEeCCCCceeeE------eccCCCceEEEEECCCCCEEEEeeC-----cCeEE
Q 007229 19 GRGILISGNPKTDTILYCN---GRSVLIRYLDKPLHVEF------YGEHGYPVTVARYSPNGEWIASADV-----SGSVR 84 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~~~~~~~------~~~h~~~v~~~~~s~d~~~las~~~-----d~~i~ 84 (612)
..+..++++|+|+.+++.. ++.+.||.+.+++.... ..+|-..+..++++++|++.++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 3678999999999988863 33245555545554311 1235578999999999987776543 57899
Q ss_pred EeecCCCceeeeeeee------cCCCeEEEEECCCCCEEEEEeCC-CCeeeEEEEEecCCceeeeeccCC----------
Q 007229 85 IWGTHNGFVLKNEFKV------LSGRIDDLQWSPDGLRIVACGDG-KGKSFVRAFMWDSGTTVGDFDGHS---------- 147 (612)
Q Consensus 85 iwd~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~---------- 147 (612)
+||+.+++. ...+.. +...+..++++|++..+..+... .....+.++++++++..+.+.+|.
T Consensus 97 ~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 97 AWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 999998873 333332 22356899999876555444320 011146667766777666554421
Q ss_pred -------------------ceEEEEEEcCCCCEEEEEeecCC-eEEEEeCC---CCe-----eeec--ccccccceEEEE
Q 007229 148 -------------------RRVLSCEFKPTRPFRIATCGEDF-LVNFYEGP---PFK-----FKLS--HREHSNFVNCIR 197 (612)
Q Consensus 148 -------------------~~v~~~~~~~~~~~~l~~~~~d~-~i~~wd~~---~~~-----~~~~--~~~~~~~v~~~~ 197 (612)
..+..++|+|+++. |+.+..++ .+..++.. .+. .... ..++......++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS 254 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence 23578999999985 55555444 55555421 111 0011 113444567899
Q ss_pred ECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 007229 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVW 262 (612)
Q Consensus 198 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw 262 (612)
++++|++.++...++.|.+||.++++...... ......+.+++|.++++++++.+..+.+.+|
T Consensus 255 ~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~--~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 255 IDKDHNIYVGDLAHSAIGVITSADRAYKLLVT--DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE--CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ECCCCCEEEEccCCCeEEEEECCCCCEEEEEE--CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 99999988888888999999985665433331 1234568899999998877777655444333
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-09 Score=99.48 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=72.4
Q ss_pred EEc--CCCCEEEEEeecCCeEEEEeCCCC----eeeeccc------c-cccceEEEEECCCCCeEEEEEcC------CcE
Q 007229 154 EFK--PTRPFRIATCGEDFLVNFYEGPPF----KFKLSHR------E-HSNFVNCIRFSPDGSKLISVSSD------RKG 214 (612)
Q Consensus 154 ~~~--~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~------~-~~~~v~~~~~s~~~~~l~~~~~d------g~i 214 (612)
.++ ++++++++.+..++.|.++|+.+. +...++. . .......+..+|+| .++++..+ +.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 889999999999999999998755 4555442 0 11245677889999 66666555 789
Q ss_pred EEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 215 LIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 215 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
.++|.++++.+..+........--..+.|+|+++.+++..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~ 206 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE 206 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence 9999999999998853222223344688899999888763
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-07 Score=91.00 Aligned_cols=482 Identities=9% Similarity=-0.040 Sum_probs=266.0
Q ss_pred CCEEEEecCCEEEEEeCCCCceeeEec-cCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCceeeeeeeecCCCeEE
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKNEFKVLSGRIDD 107 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~ 107 (612)
..+|+++..+.|+..++++......+. ..-..+..++|++++..|..+ ..++.|..+++.... ....+.........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEG 84 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcce
Confidence 347888888999999998765433322 233567899999976665544 467889999987654 22233322346778
Q ss_pred EEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe-ecCCeEEEEeCCCCeeeecc
Q 007229 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC-GEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~ 186 (612)
+++.+.+..|..+..... .|.+...+.......+.........+++.|...++..+- +..+.|...++.........
T Consensus 85 lAvD~~~~~LY~tD~~~~--~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~ 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTN--RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 162 (628)
T ss_dssp EEEETTTTEEEEEETTTT--EEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEeCCCEEEEEECCCC--EEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE
Confidence 999888777777665443 345555443322222234445678999999766555554 33567887877644332222
Q ss_pred cccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
..-.....++++++++.|+.+.. .+.|...|+..... ..+. ........+++.. +..+++-...+.|...|.
T Consensus 163 -~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk- 235 (628)
T 4a0p_A 163 -PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK- 235 (628)
T ss_dssp -CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE---ECCSCEEEEEEET-TEEEEEETTTTEEEEEET-
T ss_pred -CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee---ccCCCceEEEEEC-CEEEEecCCCCEEEEEEC-
Confidence 23456889999998887777654 57788999865444 3332 2233456788764 444444434677777775
Q ss_pred cCCCCCeeEeeeeccC-------------c------cc------------c-ceeeeeeec------c------CCEEEE
Q 007229 266 EDGSGGRVIKTFASST-------------S------NA------------V-EDMLVGCLW------Q------NDHLIT 301 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~-------------~------~~------------~-~~~~~~~~~------~------~~~~~~ 301 (612)
.+++....+.... . .. . ....+.|.. + ...++.
T Consensus 236 ---~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll 312 (628)
T 4a0p_A 236 ---TSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLL 312 (628)
T ss_dssp ---TTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEE
T ss_pred ---CCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceee
Confidence 2332211111100 0 00 0 000011100 0 112233
Q ss_pred EEcCCEEEEEEcCCCCCCceeecC-cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee------cccceE
Q 007229 302 VSLGGIISIFSASNLDKAPLSFSG-HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK------YDARIK 374 (612)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------~~~~i~ 374 (612)
.+....|+-..+.........+.. ....+..+.+...++.++.+-...+.|+.++............ ....+.
T Consensus 313 ~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~ 392 (628)
T 4a0p_A 313 FSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY 392 (628)
T ss_dssp EEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE
T ss_pred eeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc
Confidence 334455555554432221112221 2245667777744455666666678888888765443222221 223566
Q ss_pred EEEee---ccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 375 CLAAV---EEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 375 ~~~~~---~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
.++++ ++..++-+..+.|.+.++...... .+. ...-.
T Consensus 393 glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~--------------------------------~l~--------~~~l~ 432 (628)
T 4a0p_A 393 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVG--------------------------------VVL--------KGEQD 432 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCEEE--------------------------------EEE--------ECTTC
T ss_pred eEEeeccCCeEEEEcCCCCEEEEEECCCCeEE--------------------------------EEE--------eCCCC
Confidence 77773 334455566667777665432100 000 00113
Q ss_pred eEEEEEEccCCCeEEEEec-CC--eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEc-CCCeEEEEecCCcc
Q 007229 452 TVTACAIAPDGSEAIVGGQ-NG--KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD-GNREAIVWDRVSKE 527 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~ 527 (612)
....+++.|...+|+.... .. .|...+++.... .......-...+.|++.++++.|..+. ..+.|...++....
T Consensus 433 ~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~--~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 433 RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER--EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp CEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc--EEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 4788999985444444332 22 577777765443 112222234568999999876666554 46889999986654
Q ss_pred eeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 528 VKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 528 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
.. ............++... +.+..+-...+.|...|..+
T Consensus 511 r~-~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~ 549 (628)
T 4a0p_A 511 RI-VLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTG 549 (628)
T ss_dssp CE-EEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTS
T ss_pred eE-EEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcC
Confidence 32 22222233456777654 44444444566777777665
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-10 Score=102.71 Aligned_cols=231 Identities=10% Similarity=0.016 Sum_probs=147.1
Q ss_pred ceeeEeccCCCceEEEEECCCCC-EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
..+..+..+.......+|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+.+++.....
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~---- 107 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT--VDVLLDATAFTNGNAVDAQQRLVHCEHGRR---- 107 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC--EEEEEESCSCEEEEEECTTSCEEEEETTTT----
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC--EEEEeCCCCccceeeECCCCCEEEEECCCC----
Confidence 34444555667788999999998 5667777899999998 443 235556677899999999998665543333
Q ss_pred EEEEEecC-CceeeeeccC-----CceEEEEEEcCCCCEEEEE----eec-------------CCeEEEEeCCCCeeeec
Q 007229 129 VRAFMWDS-GTTVGDFDGH-----SRRVLSCEFKPTRPFRIAT----CGE-------------DFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 129 i~i~~~~~-~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~----~~~-------------d~~i~~wd~~~~~~~~~ 185 (612)
.|..++. ++ +..+..+ ...+..+++.|+|. +.++ |.. .+.|..+|..+++....
T Consensus 108 -~v~~~~~~g~-~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 108 -AITRSDADGQ-AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp -EEEEECTTSC-EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred -EEEEECCCCC-EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 2444542 43 3222211 13466799999998 5665 332 35688888766665433
Q ss_pred ccccccceEEEEECCCCCeEEEEEcC------CcEEEEecCCCCeeeeeec-cCCccccEEEEEEecCCCEEEEEeCCCc
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSSD------RKGLIYDGKSGEKIGEFSS-EDGHHGSIYAVSWSPDGKKVLTVSADKS 258 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 258 (612)
. .......++|+||++.|+.+... +.|.+|++..+. +..... ..........+++.++|++. ++..+ .
T Consensus 185 ~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-g 259 (305)
T 3dr2_A 185 A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-G 259 (305)
T ss_dssp E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-E
T ss_pred e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-c
Confidence 3 34557889999999988877665 689999987654 211100 01123345578899999844 44444 4
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeec--cCCEEEEEEcCC
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLW--QNDHLITVSLGG 306 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 306 (612)
|.+|+. .++.+..+.... ....+.+ +++.+++++.++
T Consensus 260 v~~~~~-----~g~~~~~~~~~~------~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 260 VCVFDS-----DGQLLGHIPTPG------TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEEECT-----TSCEEEEEECSS------CCCEEEECTTSCEEEEEETTE
T ss_pred EEEECC-----CCCEEEEEECCC------ceeEEEEeCCCCEEEEEcCCe
Confidence 888885 566666665543 1223333 355677666643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-10 Score=110.36 Aligned_cols=195 Identities=9% Similarity=0.013 Sum_probs=122.5
Q ss_pred CCEEEEeeCcCeEEEeecCCCceeeeeeeecCC-----------CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce
Q 007229 71 GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSG-----------RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT 139 (612)
Q Consensus 71 ~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~ 139 (612)
+..|..++.++.|.-+|..+++.+.+ +..... ....+++ ++..+++++.++ .+..++..+|+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg---~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWT-YDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDG---RLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEE-ECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTS---EEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEE-EcCCCCccccccccccCCCCCceE--ECCEEEEEcCCC---EEEEEECCCCCE
Confidence 44666667788999999999986432 221110 0012222 456777776665 355666668999
Q ss_pred eeeeccC-C----ceEEEEEEcCCCCEEEEEeec------CCeEEEEeCCCCeeeeccccccc-----------------
Q 007229 140 VGDFDGH-S----RRVLSCEFKPTRPFRIATCGE------DFLVNFYEGPPFKFKLSHREHSN----------------- 191 (612)
Q Consensus 140 ~~~~~~~-~----~~v~~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~----------------- 191 (612)
+..+..+ . ..+...-...++ .++.++. ++.|+.+|..+++.+..+.....
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v~~~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRVFKG--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEEETT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred EeeecCCcCcCcCcccccCcEEECC--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 8888755 2 112111111133 3555543 79999999999998876542211
Q ss_pred ---------------ceEEEEECCCCCeEEEEEcCC-------------------cEEEEecCCCCeeeeeeccCCcc--
Q 007229 192 ---------------FVNCIRFSPDGSKLISVSSDR-------------------KGLIYDGKSGEKIGEFSSEDGHH-- 235 (612)
Q Consensus 192 ---------------~v~~~~~s~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~-- 235 (612)
....++++|++..++.++.++ .|..+|.++|+.+..+... .|.
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-~~d~w 307 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-PGDNW 307 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCS
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-CCccc
Confidence 113578889988888887664 4999999999998877432 121
Q ss_pred -----ccEEEEEEecCC---CEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 236 -----GSIYAVSWSPDG---KKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 236 -----~~v~~i~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
....-+....+| +.++.++.+|.+.++|. .+++.+..+.
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~----~tG~~l~~~~ 354 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDR----TNGKFISAKN 354 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEET----TTCCEEEEEE
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEEC----CCCCEecccc
Confidence 122223344467 67888888899999998 7787776554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-10 Score=101.27 Aligned_cols=185 Identities=14% Similarity=0.096 Sum_probs=126.9
Q ss_pred CceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEecc---C-CCceEEEEECCCCCEEEEeeC------cCeEEEeec
Q 007229 19 GRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGE---H-GYPVTVARYSPNGEWIASADV------SGSVRIWGT 88 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~---h-~~~v~~~~~s~d~~~las~~~------d~~i~iwd~ 88 (612)
..+.+++++|||+++++. .+.|.+||.++++....... + ...+..++++|+|+++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~- 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA- 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-
T ss_pred CcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-
Confidence 478899999999987766 45599999988876543221 1 246899999999997776542 23455555
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CC-c-----eeeeeccCCceEEEEEEcCCCC
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SG-T-----TVGDFDGHSRRVLSCEFKPTRP 160 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~-~-----~~~~~~~~~~~v~~~~~~~~~~ 160 (612)
+++ .. .+..+......++|+||++.|+.+..... .+.++..+ ++ + ....+......+..+++.++|.
T Consensus 168 -~g~-~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~--~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 168 -KGK-VT-KLFADISIPNSICFSPDGTTGYFVDTKVN--RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp -TTE-EE-EEEEEESSEEEEEECTTSCEEEEEETTTC--EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred -CCc-EE-EeeCCCcccCCeEEcCCCCEEEEEECCCC--EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence 443 32 23334456789999999998877655433 34555554 44 2 1223344456778999999997
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEEC-CCCCeEEEEEcCC
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFS-PDGSKLISVSSDR 212 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg 212 (612)
+.++...++.|..||. +++.+..+..+...+.+++|+ |+++.|++++..+
T Consensus 243 -lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 243 -IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp -EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred -EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 4666656688999998 566666666666779999998 8888776665543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-10 Score=112.74 Aligned_cols=333 Identities=12% Similarity=0.074 Sum_probs=182.1
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccc--------cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHG--------SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+..|++++.++.|.-+|..+|+.+-.+........ ....+++ ++..+++++.|+.|..+|. .+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~----~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDA----ATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEET----TTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEEC----CCCCE
Confidence 45677788889999999999999887743211000 0112333 3567888889999999999 89999
Q ss_pred Eeeeecc-CccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCCceeecCcc-------------------
Q 007229 274 IKTFASS-TSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKAPLSFSGHV------------------- 327 (612)
Q Consensus 274 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~------------------- 327 (612)
+-.+... ...............++.++++.. ++.|..+|..+.+..........
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred EeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 8887764 211111111122223667777764 68899999776554322211100
Q ss_pred ------------cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEE
Q 007229 328 ------------KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRV 395 (612)
Q Consensus 328 ------------~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~ 395 (612)
.....+++. .+...++.+..++.. |...... .+ .++.++ .+.|..+
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~--w~~~~~~----------~~-----~gd~~~----~~sv~Al 288 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSP--WSHKVRS----------PK-----GGDNLY----LASIVAL 288 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEES--SCHHHHS----------TT-----CCCCTT----TTEEEEE
T ss_pred ccCceeEeCCCcccccceeEc-CCCCEEEEECCCCcc--ccCCCCC----------cc-----CCCCee----eEEEEEE
Confidence 001123333 225566655554322 2110000 00 000000 0122223
Q ss_pred ecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC---CeEEEEecCC
Q 007229 396 PLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG---SEAIVGGQNG 472 (612)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg 472 (612)
|..+++........ ...............+....+| +.++.++.+|
T Consensus 289 D~~TG~~~W~~~~~-------------------------------~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G 337 (677)
T 1kb0_A 289 DPDTGKYKWHYQET-------------------------------PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNG 337 (677)
T ss_dssp CTTTCCEEEEEESS-------------------------------TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTS
T ss_pred ECCCCCEEEEEecC-------------------------------CCcccccccCCCcEEEecccCCcEeeEEEEECCCC
Confidence 33222211000000 0000000000112223333467 6788999999
Q ss_pred eEEEEEccCcccccceeecc---------ccCce------------------------EEEEEcCCCcEEEEEcC-----
Q 007229 473 KLHIYSISGNTLTEEMVLEK---------HRGAI------------------------TVIQYSPDVSMFASADG----- 514 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~---------~~~~i------------------------~~~~~s~~~~~l~~~~~----- 514 (612)
.++++|..++++.....+.. ...++ ..++|+|+..++++...
T Consensus 338 ~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~ 417 (677)
T 1kb0_A 338 FFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVN 417 (677)
T ss_dssp EEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCE
T ss_pred EEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhccee
Confidence 99999999988632222110 00011 25788998888776532
Q ss_pred --------------------------------------CCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee
Q 007229 515 --------------------------------------NREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 515 --------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
.|.|..||+.+++.+.... +..++....++.++.+++.++
T Consensus 418 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~ 495 (677)
T 1kb0_A 418 LMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGT 495 (677)
T ss_dssp EEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEEC
T ss_pred eecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEEC
Confidence 2789999999999875532 344556666777888899999
Q ss_pred cCcEEEEEEccCCCcceeeeec-ccccCeeeEEEe-cCceEEE
Q 007229 557 IDTCVIIYEIGKPASSRITIKN-AHLGGVYGVAFM-DDFNVVS 597 (612)
Q Consensus 557 ~d~~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~l~s 597 (612)
.|+.+++||..+ + +.+..+. ++.....-+.|. +++.+++
T Consensus 496 ~dg~l~a~D~~t-G-~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 496 ADGRLVAYHAAT-G-EKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTSEEEEEETTT-C-CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCcEEEEECCC-C-ceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 999999999999 5 5555554 333344556676 7765443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-11 Score=111.29 Aligned_cols=302 Identities=12% Similarity=0.020 Sum_probs=187.2
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
.++.+..+|...+...++.|..|| .+++.......+...+.++...++|.+.+ ++.+ |..+|. +++.+. .....
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~-~~~~~ 96 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKW-RFDTK 96 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGG-GSCC-
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEE-EEECC
Confidence 345566677655544578899999 88887665555556678888888886444 4444 888886 444222 22222
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
........+. +..|..++.++ .+..++.+ ++.......+...+.++...+++. +..++.++.|..+|.. ++
T Consensus 97 ~~~~~~~~~~--~~~l~v~t~~~---~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 97 KAIVSDFTIF--EDILYVTSMDG---HLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp ----CCEEEE--TTEEEEECTTS---EEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC
T ss_pred CCcccCceEE--CCEEEEEecCC---EEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC
Confidence 2222222232 44555555544 23333333 666666666666667777777775 6667888999999998 77
Q ss_pred eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
....+......+.++...+++... .++ +.+..+| .+++...... .....+.++...++|. +..++.++.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~-l~v~t~~~gl~~ 239 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFY---AGYWTVTRPAISEDGT-IYVTSLDGHLYA 239 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEEC---CSSCCCSCCEECTTSC-EEEEETTTEEEE
T ss_pred EeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEc---cCCcceeceEECCCCe-EEEEcCCCeEEE
Confidence 766665555667788887888744 445 8899999 7777776662 3335577788888775 555667788888
Q ss_pred EEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCC
Q 007229 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQ 340 (612)
Q Consensus 262 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 340 (612)
++. +++.+..+..... ........ ++.+.+++.+|.+..++. . ......+......+.++.... +
T Consensus 240 ~~~-----~g~~~~~~~~~~~-----~~~~~~~~~~g~l~v~t~~ggl~~~d~-~-g~~~~~~~~~~~~~~~~~~d~--~ 305 (330)
T 3hxj_A 240 INP-----DGTEKWRFKTGKR-----IESSPVIGNTDTIYFGSYDGHLYAINP-D-GTEKWNFETGSWIIATPVIDE--N 305 (330)
T ss_dssp ECT-----TSCEEEEEECSSC-----CCSCCEECTTSCEEEECTTCEEEEECT-T-SCEEEEEECSSCCCSCCEECT--T
T ss_pred ECC-----CCCEeEEeeCCCC-----ccccceEcCCCeEEEecCCCCEEEECC-C-CcEEEEEEcCCccccceEEcC--C
Confidence 864 4555555443321 11122223 778999999999999984 3 333333333334445554433 4
Q ss_pred cEEEEEecCCcEEEEEcCCc
Q 007229 341 QTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 341 ~~l~~~~~dg~i~~wd~~~~ 360 (612)
..+..++.+|.+++...+..
T Consensus 306 g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 306 GTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CCEEEECTTSCEEEEEC---
T ss_pred CEEEEEcCCCeEEEEecccc
Confidence 56777888999888766543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-10 Score=111.02 Aligned_cols=305 Identities=11% Similarity=0.009 Sum_probs=183.2
Q ss_pred CCEEEEec-CCEEEEEeCCCCceeeEeccCCCc----------e-EEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 30 TDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYP----------V-TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 30 ~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~----------v-~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
+..+++++ ++.|+-+|.++|+.+=.+..+... + ..+++ ++..|+.++.|+.|..+|..+++.+...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 44455554 789999999999987665433211 1 11222 4567888889999999999999865433
Q ss_pred eee-cCCCeEEEEECC---CCCEEEEEeCCC---CeeeEEEEEecCCceeeeeccCC-----------------------
Q 007229 98 FKV-LSGRIDDLQWSP---DGLRIVACGDGK---GKSFVRAFMWDSGTTVGDFDGHS----------------------- 147 (612)
Q Consensus 98 ~~~-~~~~i~~~~~s~---~~~~l~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~----------------------- 147 (612)
... +......+..+| ++.. +++.... ....+..++..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKV-VIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEE-EECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCEE-EEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 222 211111222233 4444 3333210 11146666667899887764210
Q ss_pred --------ceEEEEEEcCCCCEEEEEeecCCe-------------------EEEEeCCCCeeeecccc--cc-------c
Q 007229 148 --------RRVLSCEFKPTRPFRIATCGEDFL-------------------VNFYEGPPFKFKLSHRE--HS-------N 191 (612)
Q Consensus 148 --------~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~~wd~~~~~~~~~~~~--~~-------~ 191 (612)
.....++++|++. +++.+..++. |..+|..+++.+..++. |. .
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 0112578889888 5888877763 99999999999887653 21 1
Q ss_pred ceEEEEECCCCC---eEEEEEcCCcEEEEecCCCCeeeeeeccC-------------------------Cccc-------
Q 007229 192 FVNCIRFSPDGS---KLISVSSDRKGLIYDGKSGEKIGEFSSED-------------------------GHHG------- 236 (612)
Q Consensus 192 ~v~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------------------~~~~------- 236 (612)
+........+|+ .++.++.+|.++++|.++|+.+....... ....
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 222222223565 78889999999999999999875432110 0000
Q ss_pred ----cEEEEEEecCCCEEEEEeC---------------------------------------------CCcEEEEEeecC
Q 007229 237 ----SIYAVSWSPDGKKVLTVSA---------------------------------------------DKSAKVWEILED 267 (612)
Q Consensus 237 ----~v~~i~~~~~~~~l~~~~~---------------------------------------------dg~i~iw~~~~~ 267 (612)
.-..++|+|+..++++... +|.|..||+
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~--- 462 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP--- 462 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET---
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC---
Confidence 0112688998887776532 367899999
Q ss_pred CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEE
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 346 (612)
.+++.+-.+...... .. ..+...++.++.++.+|.++.||..+.+.......++......+.+......++++.
T Consensus 463 -~tG~~~W~~~~~~~~--~~--g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 463 -VKQQAAWEVPYVTIF--NG--GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp -TTTEEEEEEEESSSC--CC--CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred -CCCCeEeEccCCCCc--cC--ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 888888777654321 11 123335789999999999999997776554333333333333455543223344443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-09 Score=109.49 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc-------ccE-EEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH-------GSI-YAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~v-~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+..|++++.++.|.-+|..+|+.+-.+....... ..+ ..++. .+..+++++.|+.|..+|. .+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa----~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDA----KTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEET----TTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEEC----CCCCE
Confidence 5578888889999999999999988874211100 000 11222 3556888889999999999 89999
Q ss_pred Eeeeecc-CccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCC
Q 007229 274 IKTFASS-TSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKA 319 (612)
Q Consensus 274 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 319 (612)
+-.+... ..........+....++.++++.. ++.+..||..+....
T Consensus 144 ~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 144 AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 8777654 211111111112223666766653 588999997766543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-08 Score=90.20 Aligned_cols=237 Identities=12% Similarity=0.032 Sum_probs=147.8
Q ss_pred CCEEEEecCCEEEEEeCCCCcee-----eEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCceeeeeeeecCC
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHV-----EFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKNEFKVLSG 103 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 103 (612)
|++|.++..+.|+.++++..... ..+......+..++|+++++.|..+ ..++.|.+++..... ..........
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~ 79 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG 79 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCCC
Confidence 45677777778999998865431 1222233567899999976655544 457899999998764 2222222235
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec--CCeEEEEeCCCCe
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE--DFLVNFYEGPPFK 181 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~ 181 (612)
....+++.|++..|..+..... .+.++..+.................++++|++.++.++... .+.|..+++....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~--~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLD--RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CccEEEEEecCCeEEEEECCCC--EEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 7889999998877777665543 34455554322222222222567899999976655555543 4688888875432
Q ss_pred eeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-CCCcE
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSA 259 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i 259 (612)
..............++++|+++.|+.+.. .+.|.++|+........+. . ......++.. +..++.+. ..+.|
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~-~~~P~gi~~d--~~~lyva~~~~~~v 231 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---G-LQYPFAVTSY--GKNLYYTDWKTNSV 231 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---C-CCSEEEEEEE--TTEEEEEETTTTEE
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---C-CCCceEEEEe--CCEEEEEECCCCeE
Confidence 21111122345789999998877766654 5789999987544333331 1 2234566654 34455444 56889
Q ss_pred EEEEeecCCCCCeeEeeeec
Q 007229 260 KVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~ 279 (612)
..+|. .+++.+..+..
T Consensus 232 ~~~d~----~~g~~~~~i~~ 247 (267)
T 1npe_A 232 IAMDL----AISKEMDTFHP 247 (267)
T ss_dssp EEEET----TTTEEEEEECC
T ss_pred EEEeC----CCCCceEEEcc
Confidence 99998 77888877754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-12 Score=117.53 Aligned_cols=186 Identities=10% Similarity=0.004 Sum_probs=104.0
Q ss_pred CCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecC-CCeE
Q 007229 29 KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLS-GRID 106 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~ 106 (612)
++..+++++ ++.|+.||.++|+.+-.+.. +.+.+..+..+++.+++++.||.|+.||..+++.+. ....+. ..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-ECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-eeeccCccccc
Confidence 466677766 79999999999999877765 566666677888888888899999999999887432 222111 1111
Q ss_pred -EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec
Q 007229 107 -DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 107 -~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 185 (612)
...+. ++..+++++.++ .+..++.++|+.+..+..+. ...++|++. .+++++.|+.|+.||..+++.+..
T Consensus 85 ~sp~~~-~~~~v~~g~~dg---~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQD---IWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp TCSCC------CCCCEEEE---EEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred cCceEe-cCCEEEEEeCCC---EEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEEEEEECCCCCEEEe
Confidence 11111 344555555444 35556666898888877654 235567776 588999999999999999987766
Q ss_pred ccccccceEEEEECCCC---CeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 186 HREHSNFVNCIRFSPDG---SKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
+..+. ....++.++. ..+++++.||.++.||..+|+.+...
T Consensus 156 ~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 156 ATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred Eeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 54321 2233344432 56788899999999999999988777
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-10 Score=105.67 Aligned_cols=301 Identities=11% Similarity=0.003 Sum_probs=175.9
Q ss_pred EEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 151 LSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
.+..+..++. +..++.++.|..|| .+++.......+...+.++...+++. |..++.+ +..+|. +++....+.
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~- 94 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD- 94 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC-
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE-
Confidence 3445556664 77788888899999 88888777665556677888877775 4445544 888885 666655542
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeecc-CCEEEEEEcCCEEE
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ-NDHLITVSLGGIIS 309 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 309 (612)
..........+. +..+..++.++.+..+|. . ++.......... ........ ++.+++++.++.+.
T Consensus 95 --~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~----~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~vgt~~~~l~ 160 (330)
T 3hxj_A 95 --TKKAIVSDFTIF--EDILYVTSMDGHLYAINT----D-GTEKWRFKTKKA-----IYATPIVSEDGTIYVGSNDNYLY 160 (330)
T ss_dssp --C-----CCEEEE--TTEEEEECTTSEEEEECT----T-SCEEEEEECSSC-----CCSCCEECTTSCEEEECTTSEEE
T ss_pred --CCCCcccCceEE--CCEEEEEecCCEEEEEcC----C-CCEEEEEcCCCc-----eeeeeEEcCCCEEEEEcCCCEEE
Confidence 111122223333 445777878889999987 5 555555443221 12222333 67788888889999
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeec-cEEEEecC
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVE-EVIFTAGF 388 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~ 388 (612)
.++.. .............+..+.... +..+..++ +.+..+| .+++...........+.++..+. +.++.++.
T Consensus 161 ~~d~~--g~~~~~~~~~~~~~~~~~~d~--~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~ 233 (330)
T 3hxj_A 161 AINPD--GTEKWRFKTNDAITSAASIGK--DGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL 233 (330)
T ss_dssp EECTT--SCEEEEEECSSCCCSCCEECT--TCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET
T ss_pred EECCC--CCEeEEEecCCCceeeeEEcC--CCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC
Confidence 99966 333333333334455554432 33455555 7888898 55444433332334556666643 36777777
Q ss_pred CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec-ccceEEEEEEccCCCeEEE
Q 007229 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 389 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~ 467 (612)
++.+..++..... ..... ....+.++.+.+++ .|.+
T Consensus 234 ~~gl~~~~~~g~~------------------------------------------~~~~~~~~~~~~~~~~~~~g-~l~v 270 (330)
T 3hxj_A 234 DGHLYAINPDGTE------------------------------------------KWRFKTGKRIESSPVIGNTD-TIYF 270 (330)
T ss_dssp TTEEEEECTTSCE------------------------------------------EEEEECSSCCCSCCEECTTS-CEEE
T ss_pred CCeEEEECCCCCE------------------------------------------eEEeeCCCCccccceEcCCC-eEEE
Confidence 7777776532111 11111 01112234455455 5677
Q ss_pred EecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc
Q 007229 468 GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 468 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~ 527 (612)
++.+|.|..+|. +++. ..........+.++...+++++ ..++.+|.+++...+..+
T Consensus 271 ~t~~ggl~~~d~-~g~~--~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTE--KWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp ECTTCEEEEECT-TSCE--EEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEEC----
T ss_pred ecCCCCEEEECC-CCcE--EEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEeccccc
Confidence 888888999996 4554 2333334456777777777764 557788999988765543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-08 Score=89.81 Aligned_cols=222 Identities=7% Similarity=-0.063 Sum_probs=145.0
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeCcCeEEEeecCCCceeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~d~~i~iwd~~~~~~~~~ 96 (612)
.+..++++|+++.|.++. ++.|..+++++......+...-.....++++|++..|.. -...+.|.+++..... ...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~ 115 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRV 115 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEE
Confidence 467899999888887776 589999999876654444333357889999997655554 4556789999987543 221
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
...........++++|++..|..+........|..+..+ ++....+ .........++++|++.++.++....+.|..+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 222222467899999987777666543111134444444 3322222 23335678999999888777777778999999
Q ss_pred eCCCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
|.........+.+ ......++.. +..|+.+. ..+.|.++|..+++.+..+.. +.......+++.|++.
T Consensus 195 ~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~--g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 195 NPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--HKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC--SSCCCCCCEEEECSCC
T ss_pred ecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc--ccccccceeeecCccC
Confidence 9876544333332 2234566653 55666555 458899999999998888732 2222467788888764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=103.08 Aligned_cols=215 Identities=10% Similarity=0.023 Sum_probs=149.9
Q ss_pred EEEcc-----CCCEEEEec--CCEEEEEeCCCCceeeEecc-CCCceEEEEE-C-CCCCEEEEee---------------
Q 007229 24 ISGNP-----KTDTILYCN--GRSVLIRYLDKPLHVEFYGE-HGYPVTVARY-S-PNGEWIASAD--------------- 78 (612)
Q Consensus 24 ~~~s~-----d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~-s-~d~~~las~~--------------- 78 (612)
.++|. ||+++.+.. ++.|.+.|+++.++...+.- ....+..+++ + |+++++..++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 55555 999999987 57899999999998775542 2356889998 5 9999998884
Q ss_pred ---CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe------------eeEEEEEecCCceeeee
Q 007229 79 ---VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK------------SFVRAFMWDSGTTVGDF 143 (612)
Q Consensus 79 ---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~------------~~i~i~~~~~~~~~~~~ 143 (612)
.++.+.+.|..+.+... ++..-. ....++++|||+++++++.+... ..+.+.+|...+
T Consensus 170 ~~~~~~~vtvID~~t~~v~~-qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~----- 242 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAW-QVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----- 242 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEE-EEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-----
T ss_pred ccccCceEEEEECCCCeEEE-EEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-----
Confidence 35679999999987433 443322 56778899999999998876532 123344333221
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC--Cee-eecccccccceEEEEECCCCCeEEEEEc-CCcEEEEec
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP--FKF-KLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDG 219 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~ 219 (612)
.+.++|++..+ +.|.+.|..+ ++. +..+.. .....++.++|||+++++++. +.+|.++|+
T Consensus 243 ----------~~v~~Gk~~~i-----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 243 ----------KAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp ----------HHHHHTCSEEE-----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred ----------EeccCCCeeEE-----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence 12344553222 4599999988 444 334432 235678999999998887664 788999999
Q ss_pred CCCC------------eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 220 KSGE------------KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 220 ~~~~------------~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
.+.+ ....+ .-......++|+|+|...++.-.|++|..||+.
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~v----~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAEP----ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEECC----BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred cccccccccccCcccceEEEc----CCCCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 8653 23333 344568899999999444555678999999993
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-09 Score=99.99 Aligned_cols=122 Identities=12% Similarity=0.139 Sum_probs=81.7
Q ss_pred eeecccceEEEEEEccCCCeEEEEe-cCCeEEEEEccCccc------c----cceeeccccCceEEEEEcCCCcEEEEEc
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGG-QNGKLHIYSISGNTL------T----EEMVLEKHRGAITVIQYSPDVSMFASAD 513 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~i~d~~~~~~------~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (612)
..++......++.++|||+++++++ .+..|.++|+.+.+. . ....+. -......++|+|+|...++..
T Consensus 271 ~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ 349 (595)
T 1fwx_A 271 RYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLF 349 (595)
T ss_dssp EEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEET
T ss_pred EEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEe
Confidence 3444445677899999999887765 567999999986531 0 011222 224578899999996566777
Q ss_pred CCCeEEEEecCC----------cceeeeccccccc-----ceeEEEecCCCcEEEEee---cCcE----------EEEEE
Q 007229 514 GNREAIVWDRVS----------KEVKLNNMLFHTA-----RINCLAWSPSSTMVATGS---IDTC----------VIIYE 565 (612)
Q Consensus 514 ~d~~i~iwd~~~----------~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~s~~---~d~~----------i~iwd 565 (612)
.|++|.+||+.+ .+.+ ..+..|.. .-..+.++|||++|++.. .|+. -.++|
T Consensus 350 ldsqV~kwdi~~a~~~~~g~~~~~vi-~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~d 428 (595)
T 1fwx_A 350 LDSQVVKWNIEDAIRAYAGEKVDPIK-DKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLID 428 (595)
T ss_dssp TTTEEEEEEHHHHHHHHHTCSCCCEE-EEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEE
T ss_pred cCCcEEEEEhhHhhhhhcccccceeE-EEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEE
Confidence 899999999987 2232 33333322 223457789999998874 3442 28899
Q ss_pred ccC
Q 007229 566 IGK 568 (612)
Q Consensus 566 ~~~ 568 (612)
+..
T Consensus 429 is~ 431 (595)
T 1fwx_A 429 ISG 431 (595)
T ss_dssp CSS
T ss_pred cCC
Confidence 965
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=114.10 Aligned_cols=188 Identities=10% Similarity=-0.048 Sum_probs=107.0
Q ss_pred CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCce
Q 007229 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRR 149 (612)
Q Consensus 70 d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 149 (612)
++..+++++.||.|..||..+++.+. .+.. +.+.+..+..+++.+++++.++ .+..++..+|+.+..+..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W-~~~~--~~~~s~p~~~~g~~~v~~s~dg---~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW-TLKE--DPVLQVPTHVEEPAFLPDPNDG---SLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE-EEEC--CCSCCCC-----CCEEECTTTC---CEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE-EecC--CCceecceEcCCCEEEEeCCCC---EEEEEECCCCceeeeeeccCcc
Confidence 57789999999999999999998543 3333 5566666677887777766665 2445555578877666544221
Q ss_pred -EE-EEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee
Q 007229 150 -VL-SCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227 (612)
Q Consensus 150 -v~-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 227 (612)
+. +..+. .+. .+++++.++.++.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.++|+.+..
T Consensus 82 ~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 82 LVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp HHTTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred ccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 10 01111 233 58889999999999999999988776543 234567888999999999999999999998766
Q ss_pred eeccCCccccEEEEEEecCC---CEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 228 FSSEDGHHGSIYAVSWSPDG---KKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 228 ~~~~~~~~~~v~~i~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
+... .....++.++. ..+++++.+|.+..||. .+++.+-.+.
T Consensus 156 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~----~tG~~~W~~~ 200 (369)
T 2hz6_A 156 ATYF-----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS----ESGDVLWIQN 200 (369)
T ss_dssp EEEE-----EECCBCCCCCTTCCCCEEEEETSCEEEEECT----TTCCEEEEEE
T ss_pred Eecc-----cccCccccCCccccceEEEECCCCEEEEEEC----CCCcEEEEec
Confidence 6211 11223333332 45777889999999999 7887766554
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-05 Score=79.52 Aligned_cols=511 Identities=8% Similarity=-0.029 Sum_probs=268.4
Q ss_pred EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEE
Q 007229 73 WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLS 152 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~ 152 (612)
+|+.+ ....|+.-|+.+...........-.....++|.+++..|..+...... |.....+.......+.........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~--I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT--ISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCe--EEEEECCCCCcEEEEeCCCCCcce
Confidence 44444 456789999987652211111223468899999988887776655432 333334433322233323345778
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc--CCcEEEEecCCCCeeeeeec
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS--DRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~ 230 (612)
+++.+.+..+.++-...+.|.+.++........+...-.....+++.|...+|+.... .+.|...++.........
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-- 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-- 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--
Confidence 9999877766777777889999998654332222233456789999996666766553 467777776544333323
Q ss_pred cCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc-CCEE
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL-GGII 308 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i 308 (612)
..-.....++++++++.|+.+.. .+.|...++ ..... ..+... .....++...++.++.... .+.|
T Consensus 163 --~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~----dG~~~-~v~~~~-----l~~P~glav~~~~ly~tD~~~~~I 230 (628)
T 4a0p_A 163 --PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM----LGLNR-EVIADD-----LPHPFGLTQYQDYIYWTDWSRRSI 230 (628)
T ss_dssp --CSCSSEEEEEEETTTTEEEEEETTTTEEEEEET----TSCSC-EEEEEC-----CSCEEEEEEETTEEEEEETTTTEE
T ss_pred --CCCCCcceEEEccccCEEEEEECCCCEEEEEcC----CCCce-EEeecc-----CCCceEEEEECCEEEEecCCCCEE
Confidence 23456789999998777766654 567777777 22222 222211 1123344445566666654 6888
Q ss_pred EEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE-Eec-C---CcEEEEEcCCc-eeeee--ceecccceEEEEeec
Q 007229 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS-SSY-D---GAIIKWIRGVG-YSSKL--EKKYDARIKCLAAVE 380 (612)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~-d---g~i~~wd~~~~-~~~~~--~~~~~~~i~~~~~~~ 380 (612)
...+...... ...+.........+.......+.-.- +.. + ..+++-..... .+.-. .........|... .
T Consensus 231 ~~~dk~tg~~-~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~-~ 308 (628)
T 4a0p_A 231 ERANKTSGQN-RTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAP-T 308 (628)
T ss_dssp EEEETTTCCS-CEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECC-S
T ss_pred EEEECCCCCc-eEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccc-c
Confidence 8888544332 23333333333444433110000000 000 0 01222111000 00000 0001111222222 2
Q ss_pred cEEEEecCCCeEEEEecCCCCCCc-cceeccCCCcceeeecCCCCcEEEEEeecc-EEEee-ccccee-eec-------c
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGD-AEHIDVGSQPLDLSLALSSPELALVSTESG-VILLD-SLKVMS-KID-------L 449 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~-~~~-------~ 449 (612)
.+++.+ ....|+...+....... .........+..+.+.+....+........ +..+. .+.... .+. .
T Consensus 309 ~~Ll~s-~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~ 387 (628)
T 4a0p_A 309 TFLLFS-QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNL 387 (628)
T ss_dssp SEEEEE-ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------
T ss_pred ceeeee-ccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccc
Confidence 233332 34456655554332110 111122234566777777767766665443 44444 222211 111 1
Q ss_pred cceEEEEEEccCCCeEE-EEecCCeEEEEEccCcccccceeeccccCceEEEEEcC-CCcEEEEEcCCC--eEEEEecCC
Q 007229 450 GFTVTACAIAPDGSEAI-VGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSP-DVSMFASADGNR--EAIVWDRVS 525 (612)
Q Consensus 450 ~~~i~~~~~s~~~~~l~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~--~i~iwd~~~ 525 (612)
...+..+++...++.|. +-...+.|.+.+++.... ...+...-....+|++.| .|.++.+-.... .|...++..
T Consensus 388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~--~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG 465 (628)
T 4a0p_A 388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSV--GVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG 465 (628)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEE--EEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS
T ss_pred cCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeE--EEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC
Confidence 23578999999876655 445678899999875432 122223345689999999 555555433333 566666655
Q ss_pred cceeeecccccccceeEEEecCCCcEEEEee-cCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCeE
Q 007229 526 KEVKLNNMLFHTARINCLAWSPSSTMVATGS-IDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604 (612)
Q Consensus 526 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i 604 (612)
.... ......-...+.|++.++++.|..+. ..+.|...+++... .............+|+...+..+++=.....|
T Consensus 466 ~~~~-~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~--r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i 542 (628)
T 4a0p_A 466 TERE-VLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN--RIVLEDSNILQPVGLTVFENWLYWIDKQQQMI 542 (628)
T ss_dssp CSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCEEEEEEETTEEEEEETTTTEE
T ss_pred CCcE-EEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc--eEEEEcCCCCCcEEEEEECCEEEEEECCCCeE
Confidence 4432 22222234578999999877776664 45789999997633 22222233344566766544444444445555
Q ss_pred EEEE
Q 007229 605 RVWR 608 (612)
Q Consensus 605 ~~w~ 608 (612)
...|
T Consensus 543 ~~~~ 546 (628)
T 4a0p_A 543 EKID 546 (628)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-05 Score=82.86 Aligned_cols=518 Identities=10% Similarity=0.021 Sum_probs=257.4
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-------eeeeeeecCCCeEEEEECCC----CCEEEEEeCCCCeeeE
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-------LKNEFKVLSGRIDDLQWSPD----GLRIVACGDGKGKSFV 129 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~~~~~i 129 (612)
.-+++++-.+| +|..|+..|.=.+|.+..... +... -..-++|..++.... ...|++++..+....+
T Consensus 328 ~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~-~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 328 IAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMET-FTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 405 (1158)
T ss_dssp CCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEE-ECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEE
T ss_pred CccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEee-ecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeE
Confidence 34677777766 788888888777777764321 1111 224468888877432 2366665554433344
Q ss_pred EEEEecCC-ceee--eeccCCceEEEEEEc---CCCCEEEEEeecCCeEEEEeC--CCCeeeeccccc---ccceEEEEE
Q 007229 130 RAFMWDSG-TTVG--DFDGHSRRVLSCEFK---PTRPFRIATCGEDFLVNFYEG--PPFKFKLSHREH---SNFVNCIRF 198 (612)
Q Consensus 130 ~i~~~~~~-~~~~--~~~~~~~~v~~~~~~---~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~---~~~v~~~~~ 198 (612)
++...--+ +... .+++ -..++.+... +.+.| |+.+..+.+ .++.+ ++.+.+ ...+. ...+.+-.+
T Consensus 406 ~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~y-LvlS~~~~T-~Vl~i~~e~veev-~~~gf~~~~~TL~~~~l 481 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDT-LVLSFVGQT-RVLMLNGEEVEET-ELMGFVDDQQTFFCGNV 481 (1158)
T ss_dssp EEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCE-EEEEETTEE-EEEEEETTEEEEE-CCTTCCSSSCEEEEEEE
T ss_pred EEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCE-EEEECCCCe-EEEEEeCCccccc-ccccccCCCCcEEEEEc
Confidence 44433311 1111 2332 3566666543 23455 555555555 44443 222222 11111 112222222
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeee
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
++ ..++=.+. ..|++.+...+..+..+.. .....|...+.+ +.+++.+. .+.+.++++ ..++......
T Consensus 482 -~~-~~ivQVt~-~~Irli~~~~~~~~~~w~~--p~~~~I~~As~n--~~~vvva~-g~~l~~fel----~~~~L~~~~~ 549 (1158)
T 3ei3_A 482 -AH-QQLIQITS-ASVRLVSQEPKALVSEWKE--PQAKNISVASCN--SSQVVVAV-GRALYYLQI----HPQELRQISH 549 (1158)
T ss_dssp -TT-TEEEEEES-SCEEEEESSSCCEEEEECC--TTCCCCCEEEEC--SSEEEEEE-TTEEEEEEE----ETTEEEEEEE
T ss_pred -CC-CeEEEEec-CEEEEEECCCCeEEEEEEC--CCCCEEEEEEeC--CCEEEEEE-CCEEEEEEe----eCCceeeecc
Confidence 22 34444443 4588888766666666521 233456666654 34566664 678888888 3333222111
Q ss_pred ccCccccceeeeeeecc--------CCEEEEEEc-CCEEEEEEcCCCCCCceeecCcccceeEEEEE-ecCCcEEEEEec
Q 007229 279 SSTSNAVEDMLVGCLWQ--------NDHLITVSL-GGIISIFSASNLDKAPLSFSGHVKNVSTLTAL-KISQQTILSSSY 348 (612)
Q Consensus 279 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~ 348 (612)
......+.++... ...+++|.. ++.++++++.........--+......++.+. -....++..|-.
T Consensus 550 ----~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~ 625 (1158)
T 3ei3_A 550 ----TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALG 625 (1158)
T ss_dssp ----EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred ----cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeC
Confidence 1112234444432 367888886 99999999875332211111112344555555 222457888999
Q ss_pred CCcEEEEEcC--Cceeeeecee--cccceEEEEe--ecc-EEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecC
Q 007229 349 DGAIIKWIRG--VGYSSKLEKK--YDARIKCLAA--VEE-VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421 (612)
Q Consensus 349 dg~i~~wd~~--~~~~~~~~~~--~~~~i~~~~~--~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (612)
||.+..+.++ ++........ ...++.-..+ .+. .+++.+ +....++... +... ........-.....|+.
T Consensus 626 dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~-~s~l~~~~v~~~~~F~s 702 (1158)
T 3ei3_A 626 DGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLV-FSNVNLKEVNYMCPLNS 702 (1158)
T ss_dssp TSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEE-EEEBSSSCCCEEEEECC
T ss_pred CCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceE-EeccChHHhceEeccCc
Confidence 9998766554 3333221111 1223322222 222 233333 3322223221 1110 11111111112223332
Q ss_pred C-CCcEEEEEeeccEEEee----cccceeeecccceEEEEEEccCCCeEEEEecC-------------------------
Q 007229 422 S-SPELALVSTESGVILLD----SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN------------------------- 471 (612)
Q Consensus 422 ~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------------- 471 (612)
. -+.-++...++.+.+.. ..-..++++....+..++++|+.+.++++..+
T Consensus 703 e~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1158)
T 3ei3_A 703 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSS 782 (1158)
T ss_dssp SSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEE
T ss_pred ccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhc
Confidence 2 13344444455555554 22345566678889999999988876665422
Q ss_pred ------------------------CeEEEEEccCcccccceeeccccCceEEEE---EcCC-CcEEEEEc----------
Q 007229 472 ------------------------GKLHIYSISGNTLTEEMVLEKHRGAITVIQ---YSPD-VSMFASAD---------- 513 (612)
Q Consensus 472 ------------------------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~---~s~~-~~~l~~~~---------- 513 (612)
+.|++.|..+.+......+.. +..+.+++ |..+ ..+++.|.
T Consensus 783 ~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~ 861 (1158)
T 3ei3_A 783 VSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP 861 (1158)
T ss_dssp ECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSC
T ss_pred ccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCC
Confidence 135555555444322223332 23344444 4332 46888775
Q ss_pred CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cC
Q 007229 514 GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DD 592 (612)
Q Consensus 514 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~ 592 (612)
..|.|++|++..++..........++|++++-- +|++||.. .+++++|++.... .+..-..+-..|..+... -+
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~--~L~~~~~~~~~i~~~~l~~~~ 936 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEK--ELRTECNHYNNIMALYLKTKG 936 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTS--CEEEEEEECCCSCEEEEEEET
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCc--eEEEEeeccccEEEEEEeccC
Confidence 348899999975544322222346778888744 46544433 4689999998732 222111111123322332 46
Q ss_pred ceEEEccCCCeEEEEEe
Q 007229 593 FNVVSSGEDACIRVWRL 609 (612)
Q Consensus 593 ~~l~s~~~d~~i~~w~~ 609 (612)
++++.|..-..|.+...
T Consensus 937 ~~I~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 937 DFILVGDLMRSVLLLAY 953 (1158)
T ss_dssp TEEEEEESSBCEEEEEE
T ss_pred CEEEEEEhhheEEEEEE
Confidence 77888876666666554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.3e-08 Score=83.11 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=135.4
Q ss_pred eeeEeccCCC--ceEEEEECCCCCEEEEeeC--cCeEEEeecCCCceeeeeeee-cCCCeEEEEECCCCCEEEEEeCCCC
Q 007229 51 HVEFYGEHGY--PVTVARYSPNGEWIASADV--SGSVRIWGTHNGFVLKNEFKV-LSGRIDDLQWSPDGLRIVACGDGKG 125 (612)
Q Consensus 51 ~~~~~~~h~~--~v~~~~~s~d~~~las~~~--d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~ 125 (612)
.+..+ .|.. ....++|+||+.+.++.+. ++.|.+.|+.+++.+. .+.. .......+++ +++.|..+....+
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~-~i~l~~~~fgeGi~~--~g~~lyv~t~~~~ 86 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVEN-IHKMDDSYFGEGLTL--LNEKLYQVVWLKN 86 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEE-EEECCTTCCEEEEEE--ETTEEEEEETTCS
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEE-EEecCCCcceEEEEE--eCCEEEEEEecCC
Confidence 34444 3543 3679999999866666543 5799999999998443 3332 2122233444 4667777776554
Q ss_pred eeeEEEEEecCCceeeeeccC-CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc-----cceEEEEEC
Q 007229 126 KSFVRAFMWDSGTTVGDFDGH-SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-----NFVNCIRFS 199 (612)
Q Consensus 126 ~~~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~s 199 (612)
.+.+++.++.+.+.+++.. .. ...+++|++.++++ ..++.|.++|..+.+.+..+.-.. ..++.+.|.
T Consensus 87 --~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 87 --IGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp --EEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred --EEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 3666666688888888643 22 23466678755554 468899999999988877755221 236788888
Q ss_pred CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCC----------ccccEEEEEEecCCCEEEEEe-CCCcEEEEEe
Q 007229 200 PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG----------HHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 200 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~ 264 (612)
++...+....++.|.+.|..+++.+..+..... .......++|+|+++.+++++ ..+.+...++
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 674444443578999999999999988853210 113568999999987655554 5678888887
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-05 Score=80.55 Aligned_cols=523 Identities=8% Similarity=0.001 Sum_probs=276.7
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
...|.++....+|. |-++.++.+..||..+.+...........|.++.. .+|. |-.++.+ -+..+|..+++ .. .
T Consensus 62 ~~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~-~~-~ 135 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRK-LT-S 135 (758)
T ss_dssp SSCEEEEEEETTTE-EEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCC-EE-E
T ss_pred CceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCe-EE-E
Confidence 34688888888775 55555556889998876433211112345777765 4554 4445455 57888887765 22 1
Q ss_pred ee-----ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec--c----CCceEEEEEEcCCCCEEEE
Q 007229 98 FK-----VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD--G----HSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 98 ~~-----~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~--~----~~~~v~~~~~~~~~~~~l~ 164 (612)
+. .....|.++....+|...+.. ..+ ++.++ +++ ...+. . ....|.++...+++.. |.
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~G------l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lW 206 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQIYVGT-YNG------LCRYIPSNGK-FEGIPLPVHSSQSNLFVNSLLEDTTRQC-VW 206 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCCEEEEE-TTE------EEEEETTTTE-EEEECCCCCTTCSSCCEEEEEEETTTTE-EE
T ss_pred eccCCCCcCCCeEEEEEEcCCCCEEEEe-CCC------HhhCccCCCc-eEEecCCCccccccceeEEEEEECCCCE-EE
Confidence 21 113468888888888776643 333 44444 332 22221 1 1234888888877663 45
Q ss_pred EeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc----CCccccEEE
Q 007229 165 TCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE----DGHHGSIYA 240 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~ 240 (612)
.|+. +-+..+|..+++...........|.++...++|.+.+ |+. +-+.+++..+++........ .-....|.+
T Consensus 207 igt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 283 (758)
T 3ott_A 207 IGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWN 283 (758)
T ss_dssp EEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEE
T ss_pred EEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEE
Confidence 5554 4588888877654322112234688888888886544 554 45888987765443221100 012346888
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeecc--Cccccceeeeeeecc-CCEEEEEEcCCEEEEEEcCCCC
Q 007229 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASS--TSNAVEDMLVGCLWQ-NDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 241 i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
+....+|. |-.|+..| +.++.. .. ....+... ........+.++..+ ++.+.+|+.+ -+..++.....
T Consensus 284 i~~D~~g~-lWiGT~~G-l~~~~~-----~~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~ 354 (758)
T 3ott_A 284 IFADQEHN-IWLGTDYG-ISLSRY-----NS-ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGE 354 (758)
T ss_dssp EEECTTCC-EEEEESSS-EEEECC-----CC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSS
T ss_pred EEEcCCCC-EEEEeCCc-cccccc-----CC-ceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccc
Confidence 88887776 44455556 544432 11 11111110 000111233444333 6678888765 46666544321
Q ss_pred C-Cceeec-------CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee------cccceEEEEe-eccE
Q 007229 318 K-APLSFS-------GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK------YDARIKCLAA-VEEV 382 (612)
Q Consensus 318 ~-~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------~~~~i~~~~~-~~~~ 382 (612)
. ....+. -....|.++.... ...|..|+ ++-+..+|..+++....... ....|.++.. ..+.
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 431 (758)
T 3ott_A 355 RHDAIWYRMGDKTYPLSHNRIRHIYEDK--EQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ 431 (758)
T ss_dssp CCCCEEECTTCSSSCCSCSCEEEEEECT--TSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE
T ss_pred cceeEEeccCCcCCCCCCCceEEEEECC--CCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC
Confidence 1 111111 0123455554432 34455555 45799999887765443211 2345777777 4567
Q ss_pred EEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCC
Q 007229 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDG 462 (612)
Q Consensus 383 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 462 (612)
|..++..+-+..++..+............ ..+... ..+ ....|.++...++|
T Consensus 432 lWigT~~~Gl~~~~~~~~~~~~~~~~~~~------------------------~~~~~~---~~l-~~~~i~~i~~d~~g 483 (758)
T 3ott_A 432 LWISTCLGGIFVVDKHKLMQSTSGQYIAE------------------------QNYSVH---NGL-SGMFINQIIPDNEG 483 (758)
T ss_dssp EEEEESSSCEEEEEHHHHHHCCSSEEECS------------------------EEECGG---GTC-SCSCEEEEEECTTS
T ss_pred EEEEECCCceEEEccccccccCCcceecc------------------------cccccc---ccc-ccceeeeEEEcCCC
Confidence 88888777777777542100000000000 000000 000 12248888888888
Q ss_pred CeEEEEecCCeEEEEEccCcccccceee-ccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccc-cccce
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVL-EKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLF-HTARI 540 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i 540 (612)
++.+.++..+-|..+|..+++......- ......+.++....+|.+.+.. .. -+..+|..+.+...-...+ ....|
T Consensus 484 ~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~gl~~~~i 561 (758)
T 3ott_A 484 NVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HG-GVMRINPKDESQQSISFGSFSNNEI 561 (758)
T ss_dssp CEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TT-EEEEECC--CCCCBCCCCC---CCE
T ss_pred CEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cC-ceEEEecCCCceEEecccCCCccce
Confidence 8776333344588899887765221100 0113467888888888777654 44 4888887766542111111 13457
Q ss_pred eEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEE
Q 007229 541 NCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRV 606 (612)
Q Consensus 541 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~ 606 (612)
.++... +|++. .++.+| +..+|..+ . .+..+......+....+. .+..|.-|+.+|-+.+
T Consensus 562 ~~i~~~-~g~lW-i~t~~G-l~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~G~l~fG~~~Gl~~f 622 (758)
T 3ott_A 562 LSMTCV-KNSIW-VSTTNG-LWIIDRKT-M--DARQQNMTNKRFTSLLFDPKEDCVYLGGADGFGIS 622 (758)
T ss_dssp EEEEEE-TTEEE-EEESSC-EEEEETTT-C--CEEEC--CCCCCSEEEEETTTTEEEEECBSEEEEE
T ss_pred EEEEEC-CCCEE-EECCCC-eEEEcCCC-c--eeEEecCCCCceeeeEEECCCCcEEEecCCceEEE
Confidence 777764 66544 445666 78888876 2 233222222334445555 5677888888885543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-07 Score=80.92 Aligned_cols=195 Identities=8% Similarity=-0.103 Sum_probs=129.6
Q ss_pred CceeEEEEccCCCEEEEec---CCEEEEEeCCCCceeeEeccC-CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 19 GRGILISGNPKTDTILYCN---GRSVLIRYLDKPLHVEFYGEH-GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~---~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.....++|+||+.+.++.+ ++.|.+.|+++++.+..+.-. ......+++.. +++.++.-.++.+.++|..+.+.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEE
Confidence 3456899999975444443 479999999999998876421 11223455542 234444557889999999998844
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC--Cc---eEEEEEEcCCCCEEEEEeecC
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH--SR---RVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~l~~~~~d 169 (612)
..+..-.. ....+++||++|+++...+ .+.+.+.++.+.+..+.-. .. .+..+.|. ++. +.+....+
T Consensus 100 -~~i~~g~~--~g~glt~Dg~~l~vs~gs~---~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~ 171 (266)
T 2iwa_A 100 -KNFTHQMK--DGWGLATDGKILYGSDGTS---ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQT 171 (266)
T ss_dssp -EEEECCSS--SCCEEEECSSSEEEECSSS---EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTS
T ss_pred -EEEECCCC--CeEEEEECCCEEEEECCCC---eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCC
Confidence 34442211 2244667888888765322 4555555577777766522 22 36678888 664 56666678
Q ss_pred CeEEEEeCCCCeeeeccccc-------------ccceEEEEECCCCCeEEEEE-cCCcEEEEecCCC
Q 007229 170 FLVNFYEGPPFKFKLSHREH-------------SNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSG 222 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~ 222 (612)
+.|.+.|..+++.+..+.-. ......++|+|+++.+++++ ..+.+.+.++...
T Consensus 172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 89999999999988776421 13568999999988666555 5788888887654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-07 Score=80.56 Aligned_cols=201 Identities=16% Similarity=0.197 Sum_probs=132.4
Q ss_pred eeEeccCCCc--eEEEEECCCCCEEEEeeCcC--eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCee
Q 007229 52 VEFYGEHGYP--VTVARYSPNGEWIASADVSG--SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS 127 (612)
Q Consensus 52 ~~~~~~h~~~--v~~~~~s~d~~~las~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 127 (612)
++.+ .|... ...+.|+ ++.+..+.+.+| .|+++|+++++.+. .+.. ..........+++..|........
T Consensus 34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~-~~~l-~~~~FgeGit~~g~~ly~ltw~~~-- 107 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ-QIEL-GKRYFGEGISDWKDKIVGLTWKNG-- 107 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE-EEEC-CTTCCEEEEEEETTEEEEEESSSS--
T ss_pred EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE-EEec-CCccceeEEEEeCCEEEEEEeeCC--
Confidence 4444 45443 4789998 777777777765 89999999998443 4432 233433333445667777665444
Q ss_pred eEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc--c---cceEEEEECCCC
Q 007229 128 FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH--S---NFVNCIRFSPDG 202 (612)
Q Consensus 128 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~---~~v~~~~~s~~~ 202 (612)
.+.+++.++.+.+.+++.... ...++++++. |+....++.|.++|..+.+.+.++.-. . ..++.+.|. +|
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~-L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQY-LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSC---CCCEEECSSC-EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEEECccCcEEEEEECCCC---ceEEecCCCE-EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 366667778999988875432 2334456764 444455788999999999888775432 1 334567776 67
Q ss_pred CeEEEEEcCCcEEEEecCCCCeeeeeeccC---------CccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSED---------GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 203 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+..+..-.++.|.+.|.++++.+..+.... ........|+|+|+++.|++.+.. -=++|.+
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~-Wp~~~ev 252 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL-WPKVFEI 252 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT-CSEEEEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC-CCceEEE
Confidence 544444458899999999999988885421 112466899999998888877653 2344444
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-07 Score=83.23 Aligned_cols=239 Identities=13% Similarity=0.006 Sum_probs=144.7
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEecc-------------------CCCceEEEEECC-CCCEEEEee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGE-------------------HGYPVTVARYSP-NGEWIASAD 78 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~-------------------h~~~v~~~~~s~-d~~~las~~ 78 (612)
...+++++++|+++.++. ++.|..|+..+++....... ....+..+++.+ +|+++++ .
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-D 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-E
Confidence 345789999999666665 78999999887654332110 113578999998 6665554 3
Q ss_pred CcCeEEEeecCCCceeeeeee----ecCCCeEEEEECC-CCCEEEEEeCCC------------CeeeEEEEEec--CCce
Q 007229 79 VSGSVRIWGTHNGFVLKNEFK----VLSGRIDDLQWSP-DGLRIVACGDGK------------GKSFVRAFMWD--SGTT 139 (612)
Q Consensus 79 ~d~~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~s~-~~~~l~~~~~~~------------~~~~i~i~~~~--~~~~ 139 (612)
..+.|..+|..+++. ..... ........+++.+ +|+..++..... ....-.++.++ +++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 445588888776532 11111 1123578899999 998776643310 00012455555 3332
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEc-------
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSS------- 210 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------- 210 (612)
..+.........++++|+++.+.++-...+.|..|++.... ....+....+ ...+++.++|++.++...
T Consensus 178 -~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 -TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp -EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred -EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 22222223345789999998656666777899999987421 1111111223 788999999986665544
Q ss_pred ---CCcEEEEecCCCCeeeeeeccCCc-cccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 211 ---DRKGLIYDGKSGEKIGEFSSEDGH-HGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 211 ---dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
.+.|..+|. .++.+..+....+. ...+..+++ .+++++++....+.|..+++
T Consensus 256 ~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 256 GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 466888886 57777766433221 234566666 46665555556778888887
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-07 Score=91.49 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc-------ccE-EEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH-------GSI-YAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~v-~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
+..|++++.++.|.-+|..+|+.+-.+....... ..+ ..+++ .+..+++++.|+.|..+|. .+++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~----~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDA----KTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEET----TTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEEC----CCCCE
Confidence 5567888889999999999999988774211110 000 11223 2456788888999999999 89998
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCC
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKA 319 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 319 (612)
+-.+..................++.++++.. ++.+..+|..+....
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 8877654221111111111223667777654 478999987665543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.4e-08 Score=97.78 Aligned_cols=195 Identities=7% Similarity=-0.046 Sum_probs=116.1
Q ss_pred ceeEEEEc-cCCCEEEEecC------CEEEEEeCCCC-ceeeE-eccCCCceEEEEECCCCCEEEEeeCc-----CeEEE
Q 007229 20 RGILISGN-PKTDTILYCNG------RSVLIRYLDKP-LHVEF-YGEHGYPVTVARYSPNGEWIASADVS-----GSVRI 85 (612)
Q Consensus 20 ~v~~~~~s-~d~~~l~~~~~------~~i~i~~~~~~-~~~~~-~~~h~~~v~~~~~s~d~~~las~~~d-----~~i~i 85 (612)
.+...+|| |||++||+..+ ..|+++|++++ +.+.. +. .....++|+|||+.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99999999862 25999999998 63221 21 124578999999988877654 36888
Q ss_pred eecCCCcee-eeeee-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc-ee--eee-ccCCceEEEEEEcCCC
Q 007229 86 WGTHNGFVL-KNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT-TV--GDF-DGHSRRVLSCEFKPTR 159 (612)
Q Consensus 86 wd~~~~~~~-~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~-~~--~~~-~~~~~~v~~~~~~~~~ 159 (612)
+++.++... ...+. ........+.|||||++|+..........+.+++.+++. .. ..+ .........+.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 888776421 11222 223456788999999999887755443344444444442 22 333 3444555666665544
Q ss_pred CEEEEEeecC----CeEEEEeCCCCeeeec-cccccc--ceEEEEECCCCCeEEEEEcCCcE--EEEec
Q 007229 160 PFRIATCGED----FLVNFYEGPPFKFKLS-HREHSN--FVNCIRFSPDGSKLISVSSDRKG--LIYDG 219 (612)
Q Consensus 160 ~~~l~~~~~d----~~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i--~vwd~ 219 (612)
. +++....+ ..|..+++.+...... +..+.. .+..+.+. .+.++++...++.. .++++
T Consensus 332 ~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 H-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp E-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred E-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 3 45554443 3667777765221122 222333 34555554 23344556667754 45564
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-06 Score=79.42 Aligned_cols=226 Identities=10% Similarity=-0.042 Sum_probs=136.5
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--CeEEEeecCCCceee
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFVLK 95 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~~~ 95 (612)
.....++++|+|+++++-. ++.|..+|.++. ....+. -...+..++++++|+++++.... ..|..+|..+++ +.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-VE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-EE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-EE
Confidence 3567899999999666654 689999998764 333332 34578999999999976665432 246677777776 32
Q ss_pred eeeee-cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC--c-eeeee---------ccCCceEEEEEEcCCCCEE
Q 007229 96 NEFKV-LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG--T-TVGDF---------DGHSRRVLSCEFKPTRPFR 162 (612)
Q Consensus 96 ~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~--~-~~~~~---------~~~~~~v~~~~~~~~~~~~ 162 (612)
..... .......++..+++..+++-...+ .+|.++.. + .+... ...-.....+ +|+++++
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g-----~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l 181 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRG-----AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL 181 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTT-----EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCC-----eEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence 22211 122334555556554444332233 46666632 1 12100 1111234455 8888877
Q ss_pred EEEeecCCeEEEEeCCC-Cee--eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 163 IATCGEDFLVNFYEGPP-FKF--KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 163 l~~~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
.++-...+.|..+++.. ++. ...+. .......+++.++|++.++....+.|.++|.. ++........ .......
T Consensus 182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~ 258 (306)
T 2p4o_A 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGST 258 (306)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEE
T ss_pred EEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cccCCce
Confidence 77777889999999864 322 11111 11345678999999876665567889999975 6553221111 2235688
Q ss_pred EEEEe---cCCCEEEEEeCCC
Q 007229 240 AVSWS---PDGKKVLTVSADK 257 (612)
Q Consensus 240 ~i~~~---~~~~~l~~~~~dg 257 (612)
+++|. |+++.|+++...+
T Consensus 259 ~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECCSTTTTTEEEEEECTT
T ss_pred EEEEecccCCCCEEEEECCCC
Confidence 99998 8887777766543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-06 Score=84.88 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=71.0
Q ss_pred CCeEEEEEc-CCcEEEEec-CCCCeeeeeeccCCcc--------ccEEEEEEecCCCE----EEEEeCCCcEEEEEeecC
Q 007229 202 GSKLISVSS-DRKGLIYDG-KSGEKIGEFSSEDGHH--------GSIYAVSWSPDGKK----VLTVSADKSAKVWEILED 267 (612)
Q Consensus 202 ~~~l~~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~----l~~~~~dg~i~iw~~~~~ 267 (612)
+..|++++. ++.|.-+|. .+|+.+-.+....... .....++++|.+.. +++++.|+.|.-+|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa--- 138 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA--- 138 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET---
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC---
Confidence 456777777 889999999 8999887774321110 00123455444444 788888999999999
Q ss_pred CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCC
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKA 319 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 319 (612)
.+++.+-....................++.+++++. ++.|..+|..+.+..
T Consensus 139 -~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 139 -ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp -TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred -CCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 899888776554321111111111223567777664 789999997765543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.3e-06 Score=75.13 Aligned_cols=246 Identities=8% Similarity=-0.070 Sum_probs=154.8
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~~~~~~~ 98 (612)
..+|.+..+ ..+|+++..+.|+..+++.......+. ....+..++|++....|..+ ...+.|..+++.... .....
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVV 111 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-ceEEE
Confidence 456777777 457777777788888988766555444 34457899999866555544 467889999998765 22222
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeC
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEG 177 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~ 177 (612)
.........+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++-... +.|...++
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~--~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTS--RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCC--eEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 223345678999987777766655443 344555443332223334446678999999877667776666 88988887
Q ss_pred CCCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC
Q 007229 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 256 (612)
............-.....++++|++..|+.+.. .+.|..+|+........+. ........+++. ++..+++-...
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~giav~-~~~ly~td~~~ 265 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-EDSLYWTDWHT 265 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEEE-TTEEEEEETTT
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---CCCCCceEEEEE-CCEEEEecCCC
Confidence 654333223333445789999998777776654 5679999976433322221 223456777873 45555555556
Q ss_pred CcEEEEEeecCCCCCeeEeeee
Q 007229 257 KSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 257 g~i~iw~~~~~~~~~~~~~~~~ 278 (612)
+.|..++. .+++....+.
T Consensus 266 ~~V~~~~~----~~G~~~~~i~ 283 (349)
T 3v64_C 266 KSINSANK----FTGKNQEIIR 283 (349)
T ss_dssp TEEEEEET----TTCCSCEEEE
T ss_pred CeEEEEEc----cCCCccEEec
Confidence 77777775 4555444443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=8.3e-07 Score=89.22 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=168.3
Q ss_pred CCCEEEEecCCEEEEEeCCCCceeeEeccCCCc----------e-EEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee
Q 007229 29 KTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYP----------V-TVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 29 d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~----------v-~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~ 97 (612)
++..++...++.|+-+|.++|+.+=.+...... + ..+++ ++..++.++.|+.|..+|..+++.+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 444444445789999999999887555432211 0 11222 3557788888999999999999864432
Q ss_pred eeecCCCeEEEEECC--CCCEEEEEeCCC---CeeeEEEEEecCCceeeeeccC---Cc---------------------
Q 007229 98 FKVLSGRIDDLQWSP--DGLRIVACGDGK---GKSFVRAFMWDSGTTVGDFDGH---SR--------------------- 148 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~--~~~~l~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~---~~--------------------- 148 (612)
..........+.-+| .+..++++.... ....+..++..+|+.+..+... ..
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 221111111111122 133444443221 1114666666788888877421 10
Q ss_pred -------eEEEEEEcCCCCEEEEEeecCC-------------------eEEEEeCCCCeeeecccc--cc-------cce
Q 007229 149 -------RVLSCEFKPTRPFRIATCGEDF-------------------LVNFYEGPPFKFKLSHRE--HS-------NFV 193 (612)
Q Consensus 149 -------~v~~~~~~~~~~~~l~~~~~d~-------------------~i~~wd~~~~~~~~~~~~--~~-------~~v 193 (612)
....+++.|+.. +++.+..++ .|..+|..+++.+..++. |. .+.
T Consensus 224 ~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 112468888877 577777665 499999999998877653 22 223
Q ss_pred EEEEECCCCC---eEEEEEcCCcEEEEecCCCCeeeeeeccC---------CccccE-----------------------
Q 007229 194 NCIRFSPDGS---KLISVSSDRKGLIYDGKSGEKIGEFSSED---------GHHGSI----------------------- 238 (612)
Q Consensus 194 ~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~v----------------------- 238 (612)
....+..+|+ .++.++.+|.++++|..+|+.+....... ....++
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~ 382 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHN 382 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSC
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccC
Confidence 3333334665 68889999999999999999884432110 000000
Q ss_pred -EEEEEecCCCEEEEEe------------------------------------CCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 239 -YAVSWSPDGKKVLTVS------------------------------------ADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 239 -~~i~~~~~~~~l~~~~------------------------------------~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
..++++|+...+++.. .+|.|..||+ .+++.+-......
T Consensus 383 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~----~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 383 WHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP----VKQKAAWKVPYPT 458 (668)
T ss_dssp SSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET----TTTEEEEEEEESS
T ss_pred CCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC----CCCcEEEEccCCC
Confidence 1267888766655421 2377899999 8888877665432
Q ss_pred ccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC
Q 007229 282 SNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK 318 (612)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 318 (612)
.. ....+...++.+++++.++.++.||....+.
T Consensus 459 ~~----~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 459 HW----NGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp SC----CCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CC----cCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 11 1122334588999999999999999765544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-06 Score=77.97 Aligned_cols=245 Identities=8% Similarity=-0.071 Sum_probs=153.2
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCceeeeeee
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~ 99 (612)
..|.+..+ ..+|+++..+.|+..++........+. ....+..++|.+.+..|. +-...+.|..+++.... ....+.
T Consensus 79 ~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVS 155 (386)
T ss_dssp SCEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEEC
T ss_pred CeECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEe
Confidence 34556555 557777777889999998776655444 345678999998655555 44567889999998765 222232
Q ss_pred ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCC
Q 007229 100 VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGP 178 (612)
Q Consensus 100 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~ 178 (612)
........+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++-... +.|...++.
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~--~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTS--RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTT--EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCC--eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 23345678899987777766655443 233333333222223333446778999999888666666555 788888876
Q ss_pred CCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC
Q 007229 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257 (612)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 257 (612)
...........-.....|+++|++..|+.+.. .+.|..+|+........+. ........+++. ++..+++-...+
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---~~~~~P~giav~-~~~ly~td~~~~ 309 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITVF-EDSLYWTDWHTK 309 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---SSCSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---CCCCCceEEEEE-CCEEEEeeCCCC
Confidence 54333222233445789999987777776654 5778899976433332221 223456778883 455555555667
Q ss_pred cEEEEEeecCCCCCeeEeeee
Q 007229 258 SAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 258 ~i~iw~~~~~~~~~~~~~~~~ 278 (612)
.|..++. .+++....+.
T Consensus 310 ~V~~~~~----~~G~~~~~i~ 326 (386)
T 3v65_B 310 SINSANK----FTGKNQEIIR 326 (386)
T ss_dssp EEEEEET----TTCCSCEEEE
T ss_pred eEEEEEC----CCCcceEEEc
Confidence 7888875 4555555444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-07 Score=76.89 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=126.9
Q ss_pred eeeEeccCCCc--eEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeee
Q 007229 51 HVEFYGEHGYP--VTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSF 128 (612)
Q Consensus 51 ~~~~~~~h~~~--v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 128 (612)
.+..+ .|... ...+.|+ ++.+..+.+.+|.|+++|+++++.+.. + -..........++++.|........ .
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~-~--l~~~~FgeGit~~g~~Ly~ltw~~~--~ 117 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWM-E--RLGNIFAEGLASDGERLYQLTWTEG--L 117 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEE-E--ECTTCCEEEEEECSSCEEEEESSSC--E
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeE-E--CCCCcceeEEEEeCCEEEEEEccCC--E
Confidence 34444 45433 4788887 467777888889999999999985443 3 2233333223334556665554443 3
Q ss_pred EEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc--cc---cceEEEEECCCCC
Q 007229 129 VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE--HS---NFVNCIRFSPDGS 203 (612)
Q Consensus 129 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~---~~v~~~~~s~~~~ 203 (612)
+.+++.++.+.+.+++..... ..+ .++++. |+.+..++.|.++|.++.+.+.++.- +. ..++.+.|. +|+
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eG-wGL--t~Dg~~-L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ 192 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEG-WGL--CYWNGK-LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV 192 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CCE--EEETTE-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECCcCcEEEEEeCCCce-eEE--ecCCCE-EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence 666677789999888753322 333 356775 44445688999999999988877543 22 235667776 675
Q ss_pred eEEEEEcCCcEEEEecCCCCeeeeeecc----------CCccccEEEEEEecCCCEEEEEeC
Q 007229 204 KLISVSSDRKGLIYDGKSGEKIGEFSSE----------DGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
..+..-.+..|.+.|.++++.+..+... .........|+++|+++.|++.+.
T Consensus 193 lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 193 IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 4444435789999999999998887532 012246789999998777776654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-06 Score=85.92 Aligned_cols=195 Identities=7% Similarity=0.003 Sum_probs=112.7
Q ss_pred CCeEEEEEc-CCcEEEEec-CCCCeeeeeeccCCccc-------c-EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCC
Q 007229 202 GSKLISVSS-DRKGLIYDG-KSGEKIGEFSSEDGHHG-------S-IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGG 271 (612)
Q Consensus 202 ~~~l~~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~~-------~-v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 271 (612)
+..++.++. ++.|.-+|. ++|+.+-.+........ . -..++. .+..+++++.|+.+..+|. .++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~----~tG 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDA----KTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEET----TTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEEC----CCC
Confidence 456777777 889999999 89998877642211000 0 011233 2556788888999999999 899
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCCceeecCcc------------------
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKAPLSFSGHV------------------ 327 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~------------------ 327 (612)
+.+-.+..................++.++++.. ++.+..+|..+.+..........
T Consensus 136 ~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G 215 (571)
T 2ad6_A 136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence 888776654311110111111223667777776 68999999776554322211100
Q ss_pred ------------------cce-eEEEEEecCCcEEEEEecC----------------CcEEEEEcCCceeeeecee--c-
Q 007229 328 ------------------KNV-STLTALKISQQTILSSSYD----------------GAIIKWIRGVGYSSKLEKK--Y- 369 (612)
Q Consensus 328 ------------------~~v-~~~~~~~~~~~~l~~~~~d----------------g~i~~wd~~~~~~~~~~~~--~- 369 (612)
..+ ..+++. .....++.+..+ +.|..+|..+++..-.... +
T Consensus 216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred ccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 000 112333 224555555432 3589999998887654432 1
Q ss_pred -------ccceE-EEEeec---cEEEEecCCCeEEEEecCCCCCC
Q 007229 370 -------DARIK-CLAAVE---EVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 370 -------~~~i~-~~~~~~---~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
..++. ....++ ..++.++.+|.+..+|..+++..
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 12221 111234 35677888999999999888754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-05 Score=71.93 Aligned_cols=238 Identities=11% Similarity=-0.073 Sum_probs=145.5
Q ss_pred CEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCC---ceeeeeeeecCCCeE
Q 007229 31 DTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNG---FVLKNEFKVLSGRID 106 (612)
Q Consensus 31 ~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~---~~~~~~~~~~~~~i~ 106 (612)
.+|+++..+.|+..|+++.+....+. .-..+..++|+++++.|..+ ..++.|..+++.+. ......+...-....
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred CEEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 36788888889999999877665444 44567899999876555544 45689999998861 212222222224568
Q ss_pred EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCCCCeeeec
Q 007229 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGPPFKFKLS 185 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~ 185 (612)
.+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++.... +.|...++........
T Consensus 81 glavd~~~~~ly~~d~~~~--~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTT--EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred EEEEeecCCeEEEEECCCC--EEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE
Confidence 8999887766666544433 355555543332222333445778999999777656665443 7888888754322211
Q ss_pred ccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
....-.....++++|++..|+.+.. .+.|..+|+.. .....+............+++. .+..+++-...+.|..++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 2223356789999998877776654 56899999864 3333332111123345678875 3555555556678888886
Q ss_pred ecCCCCCeeEeee
Q 007229 265 LEDGSGGRVIKTF 277 (612)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (612)
.+++.+..+
T Consensus 237 ----~~g~~~~~i 245 (316)
T 1ijq_A 237 ----LTGSDVNLL 245 (316)
T ss_dssp ----TTCCCCEEE
T ss_pred ----CCCcceEEE
Confidence 555554444
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-06 Score=85.54 Aligned_cols=306 Identities=10% Similarity=-0.007 Sum_probs=159.4
Q ss_pred CCEEEEEEc-CCEEEEEEc-CCCCCCceeecCccc---------c-eeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 296 NDHLITVSL-GGIISIFSA-SNLDKAPLSFSGHVK---------N-VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 296 ~~~~~~~~~-~~~i~~~~~-~~~~~~~~~~~~~~~---------~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
++.+++++. ++.+.-+|. .+.+.....-..... . ...+++. +..++.++.|+.+..+|..+++..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCCEE
Confidence 666777777 777888886 444432221111100 0 0112222 678888889999999999998876
Q ss_pred eeceecc----cceE-EEEeeccEEEEecC------CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCc-EEEEE-
Q 007229 364 KLEKKYD----ARIK-CLAAVEEVIFTAGF------DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE-LALVS- 430 (612)
Q Consensus 364 ~~~~~~~----~~i~-~~~~~~~~l~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 430 (612)
-...... ..+. .....++.++.+.. ++.+..+|..+++..-..... .........|.... ..+.+
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~--~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT--GSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS--SCHHHHTBCTTTTTTCGGGCC
T ss_pred EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC--CCccccccCcccccccccccc
Confidence 5433211 0121 11124566666655 789999999887753211111 00000000000000 00000
Q ss_pred eeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC----------------CeEEEEEccCcccccceeecccc
Q 007229 431 TESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN----------------GKLHIYSISGNTLTEEMVLEKHR 494 (612)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------------g~v~i~d~~~~~~~~~~~~~~~~ 494 (612)
...+...|.. ... ..........+++.++...++.+..+ +.|..+|.++++..-......|.
T Consensus 217 ~~~g~~~w~~-~~~-~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 217 FGLGTKTWEG-DAW-KIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp SSHHHHTSST-TGG-GGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccCcc-cce-ecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 0000000000 000 00000001234556655566555432 35888898888764333333222
Q ss_pred --------CceEEEEEcCCCc---EEEEEcCCCeEEEEecCCcceeeeccccc------------ccce-----------
Q 007229 495 --------GAITVIQYSPDVS---MFASADGNREAIVWDRVSKEVKLNNMLFH------------TARI----------- 540 (612)
Q Consensus 495 --------~~i~~~~~s~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~i----------- 540 (612)
.++. +...++|+ .++.++.+|.++++|..+++.+....... ..++
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 2222 22334774 67788999999999999998865432211 0111
Q ss_pred ---------------eEEEecCCCcEEEEee-------------------------------------cCcEEEEEEccC
Q 007229 541 ---------------NCLAWSPSSTMVATGS-------------------------------------IDTCVIIYEIGK 568 (612)
Q Consensus 541 ---------------~~~~~s~~~~~l~s~~-------------------------------------~d~~i~iwd~~~ 568 (612)
..++++|+..+|.+.. .++.|..||..+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 2467888877776653 357899999988
Q ss_pred CCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 569 PASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 569 ~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
+ +.+-... +...+...... .+..++.++.||.|+.||.+++
T Consensus 454 -G-~~~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 454 -G-KAKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp -C-CEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred -C-CEEEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 4 3333332 22233333344 5777888899999999998764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.5e-06 Score=70.25 Aligned_cols=196 Identities=7% Similarity=0.008 Sum_probs=136.7
Q ss_pred CCceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 18 RGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.+.+..++++|+++.|++.. ++.|...|.. ++.++.+. +-......+++.+++.++++.-.++.+.++++.....+
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 35799999999988777655 5789999998 77777653 22356788999999988777767788999988765421
Q ss_pred --eeeee------ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec---CCceeeee-------ccCCceEEEEEEc
Q 007229 95 --KNEFK------VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---SGTTVGDF-------DGHSRRVLSCEFK 156 (612)
Q Consensus 95 --~~~~~------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---~~~~~~~~-------~~~~~~v~~~~~~ 156 (612)
..... ........++|.|+++.|.++.+... ..++.++ ....+..+ ..+...+..++++
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p---~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP---IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS---EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC---ceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence 11111 23446789999999988888777663 3677776 11112221 1233467899999
Q ss_pred CCCCEEEEEeecCCeEEEEeCCCCeeeec--cc-cc------ccceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLS--HR-EH------SNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 157 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~-~~------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
|....+++.....+.+..+|.... .+.. +. +. -.....|+|.++|+ |+..++.+.++.+.-
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 998878888888899999997644 4433 22 11 13678999999997 555577776666653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-06 Score=73.32 Aligned_cols=193 Identities=9% Similarity=-0.032 Sum_probs=123.1
Q ss_pred eEeeeeeccCCCCCCCceeEEEEccCCCEEEEec-C--CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEE-eeC
Q 007229 4 VHLSETYACAPSTERGRGILISGNPKTDTILYCN-G--RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIAS-ADV 79 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las-~~~ 79 (612)
+..-+.++-.+ +.-...+.|+ ++.+..+.+ . +.|+++|+++++.++.+.-. .......+.++++.|.. .-.
T Consensus 31 ~~vv~~~phd~---~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 31 YQIVHSYPHDT---KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEECCT---TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESS
T ss_pred eEEEEEecCCC---CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEee
Confidence 34444555444 3344678898 665444444 3 49999999999998877543 23333333334444444 446
Q ss_pred cCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC--C---ceEEEEE
Q 007229 80 SGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH--S---RRVLSCE 154 (612)
Q Consensus 80 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~---~~v~~~~ 154 (612)
++.+.++|..+.+. ..++.... ....+++|++.|+.....+ .+.+.+-.+.+.+..+.-. . ..+..+.
T Consensus 106 ~~~v~v~D~~t~~~-~~ti~~~~---eG~glt~dg~~L~~SdGs~---~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 106 NGLGFVWNIRNLRQ-VRSFNYDG---EGWGLTHNDQYLIMSDGTP---VLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp SSEEEEEETTTCCE-EEEEECSS---CCCCEEECSSCEEECCSSS---EEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred CCEEEEEECccCcE-EEEEECCC---CceEEecCCCEEEEECCCC---eEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 88999999999984 44554322 2234446788777765333 3444444467777776432 2 2344567
Q ss_pred EcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc------------ccceEEEEECCCCCeEEEEEc
Q 007229 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH------------SNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 155 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~ 210 (612)
+. +|. +.+..-.+..|.+.|.++++.+..+.-. ..-.+.|||+|+++.|++.+.
T Consensus 179 ~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 179 WV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 76 564 5666667889999999999987765321 135689999999988887775
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-06 Score=81.61 Aligned_cols=278 Identities=10% Similarity=-0.007 Sum_probs=163.4
Q ss_pred CCCEEEEec-CCEEEEEeC-CCCceeeEeccCCC-----------ceEEEEECCCCCE----EEEeeCcCeEEEeecCCC
Q 007229 29 KTDTILYCN-GRSVLIRYL-DKPLHVEFYGEHGY-----------PVTVARYSPNGEW----IASADVSGSVRIWGTHNG 91 (612)
Q Consensus 29 d~~~l~~~~-~~~i~i~~~-~~~~~~~~~~~h~~-----------~v~~~~~s~d~~~----las~~~d~~i~iwd~~~~ 91 (612)
++..++... ++.|+-+|. ++|+.+=.+..... ....++++|++.. |+.++.|+.|.-+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 444444444 688999999 89987644432211 0123566554434 777888999999999999
Q ss_pred ceeeeeeee-cCC--CeEE-EEECCCCCEEEEEeC------CCCeeeEEEEEecCCceeeeeccCCce------------
Q 007229 92 FVLKNEFKV-LSG--RIDD-LQWSPDGLRIVACGD------GKGKSFVRAFMWDSGTTVGDFDGHSRR------------ 149 (612)
Q Consensus 92 ~~~~~~~~~-~~~--~i~~-~~~s~~~~~l~~~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~------------ 149 (612)
+.+.+.-.. +.. .+.+ ... .++ .+++++. ++ .+..++..+|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g---~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRG---YLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCC---EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCC---eEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 864432111 100 1111 011 144 4444432 22 4666666788888776533211
Q ss_pred -------------------------E-EEEEEcCCCCEEEEEeecC----------------CeEEEEeCCCCeeeeccc
Q 007229 150 -------------------------V-LSCEFKPTRPFRIATCGED----------------FLVNFYEGPPFKFKLSHR 187 (612)
Q Consensus 150 -------------------------v-~~~~~~~~~~~~l~~~~~d----------------~~i~~wd~~~~~~~~~~~ 187 (612)
+ ..+++.++.. +++.+..+ +.|.-+|..+++.+..++
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence 0 1345666666 46665544 489999999999887755
Q ss_pred ccc----------cceEEEEEC-CCC---CeEEEEEcCCcEEEEecCCCCeeeeeeccC----------CccccE-----
Q 007229 188 EHS----------NFVNCIRFS-PDG---SKLISVSSDRKGLIYDGKSGEKIGEFSSED----------GHHGSI----- 238 (612)
Q Consensus 188 ~~~----------~~v~~~~~s-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~v----- 238 (612)
... .++. +... .+| +.++.++.+|.+.++|.++|+.+....... ....++
T Consensus 296 ~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 296 KTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp SSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred cCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecccc
Confidence 321 1222 2222 467 467778899999999999999887653211 011111
Q ss_pred ---------------------EEEEEecCCCEEEEEe---------------------------------------CCCc
Q 007229 239 ---------------------YAVSWSPDGKKVLTVS---------------------------------------ADKS 258 (612)
Q Consensus 239 ---------------------~~i~~~~~~~~l~~~~---------------------------------------~dg~ 258 (612)
..++++|+..++++.. ..|.
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~ 454 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ 454 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence 2456777766655532 2356
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
|.-||+ .+++.+-........ .--.+...++.++.++.++.++.||..+.+....
T Consensus 455 l~A~D~----~tG~~~W~~~~~~~~----~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~ 509 (599)
T 1w6s_A 455 IKAYNA----ITGDYKWEKMERFAV----WGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK 509 (599)
T ss_dssp EEEECT----TTCCEEEEEEESSCC----CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEEC----CCCCEEeEecCCCCc----cCcceEecCCEEEEECCCCeEEEEECCCCCEEEE
Confidence 777777 777766655433110 0011233478889999999999999777654433
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-06 Score=88.79 Aligned_cols=231 Identities=7% Similarity=0.022 Sum_probs=130.0
Q ss_pred cCCCEEEEec--CC----EEEEEeC---CCC--ceeeEe------ccCCC-ceEEEEEC-CCCCEEEEeeC-c----CeE
Q 007229 28 PKTDTILYCN--GR----SVLIRYL---DKP--LHVEFY------GEHGY-PVTVARYS-PNGEWIASADV-S----GSV 83 (612)
Q Consensus 28 ~d~~~l~~~~--~~----~i~i~~~---~~~--~~~~~~------~~h~~-~v~~~~~s-~d~~~las~~~-d----~~i 83 (612)
++|.++++.. ++ .++..+. ..+ .....+ .+|.. .+...+|| |||++||.+.. + .+|
T Consensus 124 ~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l 203 (751)
T 2xe4_A 124 VYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTI 203 (751)
T ss_dssp EETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEE
T ss_pred EECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEE
Confidence 6788887764 22 3444444 332 222223 23443 78899999 99999986532 2 359
Q ss_pred EEeecCCC-ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCc--eeeeec-cCCceEEEEEEcC
Q 007229 84 RIWGTHNG-FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGT--TVGDFD-GHSRRVLSCEFKP 157 (612)
Q Consensus 84 ~iwd~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~--~~~~~~-~~~~~v~~~~~~~ 157 (612)
+++|+.++ +.+...+.. ....++|+|||+.|+....+.....-+||.++ ++. ....+. ........+.|+|
T Consensus 204 ~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 204 EFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp EEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred EEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence 99999998 633222222 24578999999999888765332223566665 332 122222 2334567889999
Q ss_pred CCCEEEEEeec--CCeEEEEeCCCC--ee--eecccccccceEEEEECCCCCeEEEEEc-C----CcEEEEecCCCCeee
Q 007229 158 TRPFRIATCGE--DFLVNFYEGPPF--KF--KLSHREHSNFVNCIRFSPDGSKLISVSS-D----RKGLIYDGKSGEKIG 226 (612)
Q Consensus 158 ~~~~~l~~~~~--d~~i~~wd~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d----g~i~vwd~~~~~~~~ 226 (612)
||++++++... ...|.++|+.++ +. ............++.|+. |+.|+..+. + ..|..+++.++....
T Consensus 281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~ 359 (751)
T 2xe4_A 281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWS 359 (751)
T ss_dssp TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCC
T ss_pred CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccce
Confidence 99976665543 346788888765 22 222333445555665544 555554443 3 256667766532222
Q ss_pred e-eeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 227 E-FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 227 ~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
. +. .......+..+.+. .+.++++...++..++|-+
T Consensus 360 ~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 360 HVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred eeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 2 21 11122244555554 3344555666776666554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-06 Score=70.40 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=129.5
Q ss_pred eeeEeccCC--CceEEEEECCCCCEEEEeeCc--CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCe
Q 007229 51 HVEFYGEHG--YPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGK 126 (612)
Q Consensus 51 ~~~~~~~h~--~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 126 (612)
.+..+ .|. .-...+.|++ +.+..+.+.+ ..|+++|+.+++.+ ..... ..........+++..|........
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~-~~~~l-~~~~fgeGi~~~~~~ly~ltw~~~- 85 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL-QRAEV-PPPYFGAGIVAWRDRLIQLTWRNH- 85 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE-EEEEC-CTTCCEEEEEEETTEEEEEESSSS-
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE-EEEeC-CCCcceeEEEEeCCEEEEEEeeCC-
Confidence 34444 454 3467899987 5666666665 48999999999843 33332 223333333334666666654443
Q ss_pred eeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc-----cceEEEEECCC
Q 007229 127 SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-----NFVNCIRFSPD 201 (612)
Q Consensus 127 ~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~s~~ 201 (612)
.+.+++.++.+.+.+++..... ..+ .+++..++++ ..++.|.++|..+.+.+.++.-.. ..++.+.+. +
T Consensus 86 -~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~ 159 (243)
T 3mbr_X 86 -EGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-N 159 (243)
T ss_dssp -EEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred -EEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-C
Confidence 3566666688999888754332 333 4566644555 458899999999998877754321 245666765 6
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccC----------CccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSED----------GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----------~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+..+..-.+..|.+.|.++|+.+..+.... ........|+++|+++.|++.+.. -=++|.+
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~-wp~~~~v 231 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR-WPMLYEI 231 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-CSEEEEE
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-CCcEEEE
Confidence 6544444357899999999999988875321 123467899999988877777653 2344444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.6e-05 Score=67.74 Aligned_cols=227 Identities=13% Similarity=0.065 Sum_probs=132.8
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec----cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG----EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
...+.++.|.+++..++++..+.| +...+.++.-..+. .....+.++.|.+ ++.++. +.++.|.. ....++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCC
Confidence 347899999988888888777765 44455554322221 2345789999986 444554 45664443 2233332
Q ss_pred eeeeee---ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeee-ccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 94 LKNEFK---VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 94 ~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
-.... .+.+.+..+.+.++++.++++. .+. .....|.|+.-... ..+...+..+++.|++. +++.+...
T Consensus 111 -W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~----v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~~G 183 (327)
T 2xbg_A 111 -WSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGA----IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVSSRG 183 (327)
T ss_dssp -CEECCCCTTCSSCEEEEEEEETTEEEEEET-TCC----EEEESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEETTS
T ss_pred -ceECccccCCCCCeEEEEEECCCCEEEEeC-Ccc----EEEEcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEECCC
Confidence 11111 1334577888877776666553 331 12334444433222 34556789999999987 46666555
Q ss_pred CeEEEEeC--CCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc-CCccccEEEEEEecC
Q 007229 170 FLVNFYEG--PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE-DGHHGSIYAVSWSPD 246 (612)
Q Consensus 170 ~~i~~wd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~~~~ 246 (612)
+..+-+|. .+.+.+. ......+..+++.++++.+ .++.+|.+++.+...++....+... ......+..+.+.++
T Consensus 184 ~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 184 SFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp SEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred cEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence 55555553 4444432 2345678899999998755 5566788777643334444433211 022345889999987
Q ss_pred CCEEEEEeCCCcE
Q 007229 247 GKKVLTVSADKSA 259 (612)
Q Consensus 247 ~~~l~~~~~dg~i 259 (612)
+..++++ .+|.+
T Consensus 261 ~~~~~~g-~~g~i 272 (327)
T 2xbg_A 261 NEVWLAG-GAGAL 272 (327)
T ss_dssp SCEEEEE-STTCE
T ss_pred CEEEEEe-CCCeE
Confidence 7766654 56766
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-06 Score=87.23 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=71.6
Q ss_pred EEEEcC-CCCEEEEEeecCC-----------eEEEEeCCCCeeeec--cc-ccccceEEEEECCCCCeEEEEEc-CCcEE
Q 007229 152 SCEFKP-TRPFRIATCGEDF-----------LVNFYEGPPFKFKLS--HR-EHSNFVNCIRFSPDGSKLISVSS-DRKGL 215 (612)
Q Consensus 152 ~~~~~~-~~~~~l~~~~~d~-----------~i~~wd~~~~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~ 215 (612)
.+++.| +++ +++.|+.+. .+.+||..+++.... +. .+.....++++.++++.++.|+. +..+.
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 567777 665 677776542 688999888764332 21 12233445778899999998884 56899
Q ss_pred EEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe-CC-----CcEEEEEe
Q 007229 216 IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS-AD-----KSAKVWEI 264 (612)
Q Consensus 216 vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d-----g~i~iw~~ 264 (612)
+||..+++....-.. .....-.+++..++++.++.|+ .+ ..+.+||.
T Consensus 269 ~yd~~t~~W~~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDM--QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp EEEGGGTEEEECCCC--SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred EecCcCCceeECCCC--CccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 999987765433211 1111223456667899888888 34 46899998
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-05 Score=69.79 Aligned_cols=237 Identities=10% Similarity=-0.075 Sum_probs=144.8
Q ss_pred EEEEecCCEEEEEeCCCCc-eeeEeccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEE
Q 007229 32 TILYCNGRSVLIRYLDKPL-HVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ 109 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 109 (612)
+|+++..+.|+..+++... ....+......+.+++|.+.+..| .+-...+.|..++..........+...-.....++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 6778888899999998764 222222233467799999865444 45456788999998876422222333335677899
Q ss_pred ECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEee-cCCeEEEEeCCCCeeeecccc
Q 007229 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG-EDFLVNFYEGPPFKFKLSHRE 188 (612)
Q Consensus 110 ~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~ 188 (612)
+.+.+..|..+..... .|.+...+.......+.........+++.|.+.++..+-. ..+.|...++...........
T Consensus 86 vd~~~g~ly~~d~~~~--~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 86 CDWLGEKLYWTDSETN--RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EETTTTEEEEEETTTT--EEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEcCCCeEEEEECCCC--EEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 9987766666554443 3445544433222223344566789999998775555542 357888888764322222222
Q ss_pred cccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecC
Q 007229 189 HSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~ 267 (612)
.-.....++++|++..|+.+.. .+.|..+|+... ....+. .........+++.. +..+.+-...+.|..++.
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~--~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~--- 236 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVV--KGSLPHPFALTLFE-DILYWTDWSTHSILACNK--- 236 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--CSCCSCEEEEEEET-TEEEEEETTTTEEEEEET---
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEe--cCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC---
Confidence 2345789999998777776654 577999997643 333331 12334566777763 344455445678888887
Q ss_pred CCCCeeEeeee
Q 007229 268 GSGGRVIKTFA 278 (612)
Q Consensus 268 ~~~~~~~~~~~ 278 (612)
.+++....+.
T Consensus 237 -~~G~~~~~i~ 246 (318)
T 3sov_A 237 -YTGEGLREIH 246 (318)
T ss_dssp -TTCCSCEEEE
T ss_pred -CCCCceEEEe
Confidence 5565554443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-07 Score=91.52 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=47.1
Q ss_pred EEEECC-CCCeEEEEEcCC-----------cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEE
Q 007229 195 CIRFSP-DGSKLISVSSDR-----------KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKV 261 (612)
Q Consensus 195 ~~~~s~-~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i 261 (612)
.+++.+ +++.++.|+.+. .+.+||+.+++..........+.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887643 5889999887754332211123333345677889999998884 457899
Q ss_pred EEe
Q 007229 262 WEI 264 (612)
Q Consensus 262 w~~ 264 (612)
||.
T Consensus 270 yd~ 272 (656)
T 1k3i_A 270 YDS 272 (656)
T ss_dssp EEG
T ss_pred ecC
Confidence 998
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-05 Score=77.64 Aligned_cols=111 Identities=16% Similarity=0.074 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc------EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEe
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS------IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 275 (612)
+..+++++.++.|.-+|.++|+.+-.+......... -..+++ .+..++.++.++.|.-+|. .+++.+-
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~----~TG~~~W 141 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNK----NTGKVVW 141 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEES----SSCCEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEEC----CCCCEEe
Confidence 345666666455999999999998777432111000 011222 2456777888999999999 8999887
Q ss_pred eeeccCccccceeeeeeeccCC------EEEEEEc------CCEEEEEEcCCCCC
Q 007229 276 TFASSTSNAVEDMLVGCLWQND------HLITVSL------GGIISIFSASNLDK 318 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~i~~~~~~~~~~ 318 (612)
.+..................+. .++++.. ++.+..+|..+.+.
T Consensus 142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 7765432110000011111122 5666553 68888888766544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-06 Score=76.62 Aligned_cols=239 Identities=11% Similarity=0.000 Sum_probs=139.0
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-------------------ecccceEEEEee--ccEEEEec
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-------------------KYDARIKCLAAV--EEVIFTAG 387 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------------~~~~~i~~~~~~--~~~l~~~~ 387 (612)
....+++.+ ++.+++++..++.|..|+..++....... .....+..++++ ++.|+.+.
T Consensus 20 ~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 344555553 26667788888999999887654432211 011246677774 45666665
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc-CCCeEE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP-DGSEAI 466 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~ 466 (612)
..+.+..++..++... .+ .... .. ........+++.+ +|++.+
T Consensus 99 ~~~~i~~~d~~~g~~~---~~--------------------~~~~-------~~------~~~~~p~~i~~d~~~G~l~v 142 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHAT---QL--------------------ATSV-------DG------VPFKWLYAVTVDQRTGIVYF 142 (322)
T ss_dssp TTTEEEEECTTCEECE---EE--------------------ESEE-------TT------EECSCEEEEEECTTTCCEEE
T ss_pred CCCCEEEEeCCCCEEE---Ee--------------------cccC-------CC------CcccccceEEEecCCCEEEE
Confidence 5555666665432211 00 0000 00 0012356788999 887666
Q ss_pred EEec-----------------CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE-cCCCeEEEEecCCcce
Q 007229 467 VGGQ-----------------NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA-DGNREAIVWDRVSKEV 528 (612)
Q Consensus 467 ~~~~-----------------dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~ 528 (612)
+-.. +|.|..||..+++.. .+...-.....++++|++++|..+ ..++.|.+|++.....
T Consensus 143 ~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~---~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~ 219 (322)
T 2fp8_A 143 TDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT---LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK 219 (322)
T ss_dssp EESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE---EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT
T ss_pred ECCcccccccccceehcccCCCceEEEEeCCCCEEE---EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC
Confidence 5322 367888888766542 111122345679999999866554 5668999999875321
Q ss_pred -eeecccccccceeEEEecCCCcEEEEeec----------CcEEEEEEccCCCcceeeeeccc----ccCeeeEEEecCc
Q 007229 529 -KLNNMLFHTARINCLAWSPSSTMVATGSI----------DTCVIIYEIGKPASSRITIKNAH----LGGVYGVAFMDDF 593 (612)
Q Consensus 529 -~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~h----~~~v~~~~~~~~~ 593 (612)
....+....+ ...+++.++|++.++... .+.|..+|.. + +.+..+... ...++.+++.++.
T Consensus 220 ~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G-~~~~~~~~~~g~~~~~~~~~~~~~g~ 295 (322)
T 2fp8_A 220 GTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--G-NILEVIPLPPPFAGEHFEQIQEHDGL 295 (322)
T ss_dssp TCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--S-CEEEEEECCTTTTTSCCCEEEEETTE
T ss_pred CccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--C-CEEEEEECCCCCccccceEEEEeCCE
Confidence 0011111123 678999999987666544 4567777754 4 555554433 2356777766666
Q ss_pred eEEEccCCCeEEEEEecc
Q 007229 594 NVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 594 ~l~s~~~d~~i~~w~~~~ 611 (612)
.+++...++.|..++++.
T Consensus 296 L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEECSSCSEEEEEEC--
T ss_pred EEEeecCCCceEEEeccc
Confidence 667767788999998764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.2e-06 Score=77.10 Aligned_cols=241 Identities=9% Similarity=0.047 Sum_probs=136.1
Q ss_pred CceeEEEEcc-CCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-cC----eEEEeecCCC
Q 007229 19 GRGILISGNP-KTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-SG----SVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~-d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-d~----~i~iwd~~~~ 91 (612)
.....++++| ++..|.++. ++.|..+|+++++..... ........++|+++|++|..+.. ++ .+.+.+....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3667999998 456666665 489999999887655543 35566889999999996666543 11 2333443322
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
......+. .......++++|++..|..+..... .+..+..+.+....... +.......++|+|++++++++-...+
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~--~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~ 292 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAG--QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH 292 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTT--EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCC--EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence 21112222 2345678899994444544443333 23333333333212111 12245678999999997677777788
Q ss_pred eEEEEeCCC--Cee--eeccccc---------------ccceE-EEEEC--------CCCCeEEEEEcCCcEEEEecCCC
Q 007229 171 LVNFYEGPP--FKF--KLSHREH---------------SNFVN-CIRFS--------PDGSKLISVSSDRKGLIYDGKSG 222 (612)
Q Consensus 171 ~i~~wd~~~--~~~--~~~~~~~---------------~~~v~-~~~~s--------~~~~~l~~~~~dg~i~vwd~~~~ 222 (612)
.|..++... ++. ...+.+. -.... .++.. +++.+.++=...+.|+.++ .+|
T Consensus 293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G 371 (430)
T 3tc9_A 293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQG 371 (430)
T ss_dssp EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTS
T ss_pred EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCC
Confidence 999987542 221 1111110 01123 45553 3455444444567888888 455
Q ss_pred Ceeeeeec----cCC----------ccccEEEEEEecC-CCEEEEEeCCCcEEEEEe
Q 007229 223 EKIGEFSS----EDG----------HHGSIYAVSWSPD-GKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 223 ~~~~~~~~----~~~----------~~~~v~~i~~~~~-~~~l~~~~~dg~i~iw~~ 264 (612)
+....... ..+ .-.....++++|+ +.++++-.....|+.+++
T Consensus 372 ~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 372 RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 44333311 001 1125789999995 555555445667887776
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-05 Score=70.05 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=66.1
Q ss_pred cceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCc--EEEEEeecCC
Q 007229 191 NFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKS--AKVWEILEDG 268 (612)
Q Consensus 191 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~--i~iw~~~~~~ 268 (612)
.....++|+++++++++-..++.|..||... +....+ .....+..+++.++|+++++...... |..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~----~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~---- 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA----TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK---- 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE----ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC----
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEE----eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC----
Confidence 4577899999998666655788999999764 444333 22346889999999996655443333 555665
Q ss_pred CCCeeEeeeeccCccccceeeeeeeccCCEEEEEE-cCCEEEEEEcC
Q 007229 269 SGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS-LGGIISIFSAS 314 (612)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 314 (612)
.+++.......... ...... +.+.+..+++.. ..+.|..++..
T Consensus 103 ~~g~~~~~~~~~~~-~~~~g~--~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 103 SDGTVETLLTLPDA-IFLNGI--TPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp TTSCEEEEEECTTC-SCEEEE--EESSSSEEEEEETTTTEEEEEETT
T ss_pred CCCeEEEEEeCCCc-cccCcc--cccCCCcEEEEECCCCeEEEEeCC
Confidence 55554332222111 111111 124455555555 47788888754
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.74 E-value=0.00011 Score=68.75 Aligned_cols=240 Identities=11% Similarity=-0.048 Sum_probs=149.2
Q ss_pred CCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCc---eeeeeeeecCCCe
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGF---VLKNEFKVLSGRI 105 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~i 105 (612)
..+|+++..+.|+..+++.......+ ..-..+..++|++.+..|..+ ...+.|..+++.... .............
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34777777899999999877655544 355678899999866655554 456789999987632 1222223234567
Q ss_pred EEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeec-CCeEEEEeCCCCeeee
Q 007229 106 DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE-DFLVNFYEGPPFKFKL 184 (612)
Q Consensus 106 ~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~ 184 (612)
..+++.+.+..|..+..... .|.+...+.......+.........+++.|.+.+++++-.. .+.|...++.......
T Consensus 162 ~glavD~~~~~lY~~d~~~~--~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEETTTTEEEEEETTTT--EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred ccEEEEecCCceEEEECCCC--eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 88999987666766655443 34444444333333334445568899999987765665533 4788888876543333
Q ss_pred cccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
.....-.....|++++++..|+.+.. .+.|..+|+..... ..+............+++. .+..+++-...+.|..++
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence 23333356889999998888877654 57799999764433 3332111223445677774 344555555667888888
Q ss_pred eecCCCCCeeEeeee
Q 007229 264 ILEDGSGGRVIKTFA 278 (612)
Q Consensus 264 ~~~~~~~~~~~~~~~ 278 (612)
. .+++.+..+.
T Consensus 318 ~----~~G~~~~~i~ 328 (400)
T 3p5b_L 318 R----LTGSDVNLLA 328 (400)
T ss_dssp S----SSCCCCEEEE
T ss_pred c----CCCCceEEEe
Confidence 6 5665555544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-05 Score=72.01 Aligned_cols=204 Identities=8% Similarity=-0.105 Sum_probs=131.2
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~ 96 (612)
.+..++|++.++.|.... .+.|..++++.......+.........+++.+.+..| ++-...+.|.+.++.... ...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~ 152 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKV 152 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEE
Confidence 568899998888887775 6899999998776555444444556789999855544 555566789999987654 222
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
.....-.....+++.|.+..|..+...... +|+..+ .+.....+ .........++++|++..+.++-...+.|..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~---~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTP---RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSC---EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCC---EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 233334567899999977777666544311 344444 23333333 2334567899999988766777777789999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
+|+........+.........+++ .++...++-...+.|..++..+|+....+
T Consensus 230 ~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 230 ANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 997754333223333345667777 33434444444677777776666665555
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-05 Score=78.65 Aligned_cols=115 Identities=10% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccc----eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCce
Q 007229 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVE----DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPL 321 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 321 (612)
++ .+++++.++.|.-+|. .+++.+-.+......... .........++.+++++.++.+..+|..+.+....
T Consensus 68 ~g-~vyv~~~~~~v~AlD~----~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DG-VIYVTASYSRLFALDA----KTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TT-EEEEEETTTEEEEEES----SSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CC-EEEEEcCCCCEEEEEC----CCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEee
Confidence 44 4555555444888888 888888777654322111 00012233578899999999999999877665433
Q ss_pred eecCc-cc--cee-EEEEEe--cCCc-EEEEEec------CCcEEEEEcCCceeeee
Q 007229 322 SFSGH-VK--NVS-TLTALK--ISQQ-TILSSSY------DGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 322 ~~~~~-~~--~v~-~~~~~~--~~~~-~l~~~~~------dg~i~~wd~~~~~~~~~ 365 (612)
.-... .. .+. ...... .+++ .++.++. +|.|..+|..+++..-.
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 22111 10 111 111222 0112 5666543 78899999988876553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-05 Score=74.43 Aligned_cols=205 Identities=8% Similarity=-0.106 Sum_probs=133.3
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceee
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~ 95 (612)
..+..++|++.++.|.... .+.|..++++.......+.........+++.+.+..| ++-...+.|.+.++.... ..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~ 194 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RK 194 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eE
Confidence 3577899998887777775 6899999998776555444444456789999855544 455566789999887654 22
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
..+...-.....+++.|++..|..+...... +|+..+ .+.....+ .........++|+|++..+.++-...+.|.
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~---~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~ 271 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTP---RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 271 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSC---EEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCC---EEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence 2333333567899999988777766544311 344444 23322222 333456789999988876677777788999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.+|+........+.........|++ ..+..+++-...+.|..++..+|+....+
T Consensus 272 ~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 272 RANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 9998654333233333445677777 34444444445677888886677766665
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-06 Score=72.75 Aligned_cols=183 Identities=7% Similarity=-0.017 Sum_probs=120.9
Q ss_pred ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEE--EEECCCCCeEEEE-EcCCcEEEEecCCCCe
Q 007229 148 RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNC--IRFSPDGSKLISV-SSDRKGLIYDGKSGEK 224 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~ 224 (612)
.....+.|+. ..+..+.+.+|.|+.+|+++++.+..+ -...... +++ +++.|+.. -.++.+.+||.++.+.
T Consensus 55 ~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 55 AFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp CCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEE
T ss_pred cccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcE
Confidence 3457788874 347888888999999999999988776 2233333 454 44455544 4588999999999999
Q ss_pred eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE-
Q 007229 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS- 303 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 303 (612)
+.++... ..-..++ +|++.|+.+..++.|.++|. .+.+.+..+........-.....+.+.++.+++..
T Consensus 129 ~~ti~~~----~eGwGLt--~Dg~~L~vSdGs~~l~~iDp----~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw 198 (268)
T 3nok_A 129 ERTTRYS----GEGWGLC--YWNGKLVRSDGGTMLTFHEP----DGFALVGAVQVKLRGQPVELINELECANGVIYANIW 198 (268)
T ss_dssp EEEEECS----SCCCCEE--EETTEEEEECSSSEEEEECT----TTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EEEEeCC----CceeEEe--cCCCEEEEECCCCEEEEEcC----CCCeEEEEEEeCCCCcccccccccEEeCCEEEEEEC
Confidence 9999532 2223343 56788888777889999999 88888888876542222222233444456676666
Q ss_pred cCCEEEEEEcCCCCCCceeec-------------CcccceeEEEEEecCCcEEEEEe
Q 007229 304 LGGIISIFSASNLDKAPLSFS-------------GHVKNVSTLTALKISQQTILSSS 347 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~ 347 (612)
.++.|.+.|..+... ...+. ....-.+.|++.+..+.++++|-
T Consensus 199 ~s~~I~vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 477888888655432 22111 12235688999865567777664
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-05 Score=67.35 Aligned_cols=201 Identities=11% Similarity=0.073 Sum_probs=121.7
Q ss_pred eccCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeee-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEE
Q 007229 55 YGEHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAF 132 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~ 132 (612)
+.+-...+..++|+|+++.| |+...++.|...|.. ++ +...+. .-......+++.+++.++++ .+... .+.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs-~E~~~--~l~~~ 96 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVIS-DERDY--AIYVI 96 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEE-ETTTT--EEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEE-ECCCC--cEEEE
Confidence 45666789999999986655 456778889999998 65 333332 22357889999999976555 33332 34455
Q ss_pred EecCCce---eeeec------cCCceEEEEEEcCCCCEEEEEeecCC--eEEEEeC-CCCeeeecc-------cccccce
Q 007229 133 MWDSGTT---VGDFD------GHSRRVLSCEFKPTRPFRIATCGEDF--LVNFYEG-PPFKFKLSH-------REHSNFV 193 (612)
Q Consensus 133 ~~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~wd~-~~~~~~~~~-------~~~~~~v 193 (612)
..+.... +.... ........++++|+++. |.++.+.. .|..|+- .....+..+ ..+...+
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~-L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT-FWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE-EEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE-EEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 5543221 12221 23445689999999985 44454443 4444541 111111111 1123457
Q ss_pred EEEEECCCCCeEE-EEEcCCcEEEEecCCCCeeeeeeccCCc------cccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 007229 194 NCIRFSPDGSKLI-SVSSDRKGLIYDGKSGEKIGEFSSEDGH------HGSIYAVSWSPDGKKVLTVSADKSAKVWE 263 (612)
Q Consensus 194 ~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~dg~i~iw~ 263 (612)
.++++.|....|+ .....+.+.++|.+ |+.+..+....+. -.....|+|.++|+ |+..++.+.+..+.
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 8999999765554 44556778889954 6666666443222 13678999999998 44456766555554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.3e-05 Score=72.13 Aligned_cols=239 Identities=8% Similarity=-0.002 Sum_probs=139.8
Q ss_pred CceeEEEEccC--CCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc---C-eEEEeecCCC
Q 007229 19 GRGILISGNPK--TDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS---G-SVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d--~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d---~-~i~iwd~~~~ 91 (612)
.....++++|+ +..|.++. .+.|+.+|+++++.... .+.......++++++|+++++-... . .+...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 35779999995 45566655 48999999988776654 4455668999999999955554311 1 2333333332
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec--cCCceEEEEEEcCCCCEEEEEee
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD--GHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
......+ ..-.....+++.|++..|..+..... +|+.++ ++.....+. +....-..++|+|+++++.++-.
T Consensus 218 ~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~----~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHA----MISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEE-EECSSBCCCEECTTTCCEEECBTTCS----EEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred eeccccc-cccCCCCEEEEeCCCCeEEEEECCCC----EEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 2111122 23445677899994444544443332 355555 454422221 11222346999999997677777
Q ss_pred cCCeEEEEeCC--CCeee--ecccc---------------cccceEEEEE---------CCCCCeEEEEEcCCcEEEEec
Q 007229 168 EDFLVNFYEGP--PFKFK--LSHRE---------------HSNFVNCIRF---------SPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 168 ~d~~i~~wd~~--~~~~~--~~~~~---------------~~~~v~~~~~---------s~~~~~l~~~~~dg~i~vwd~ 219 (612)
..+.|+.++.. ++... ..+.+ .-.....+++ .+++++.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 78899998754 33211 11111 1123677899 677766665555678999984
Q ss_pred CCCCeeeeeeccC----C----------ccccEEEEEEe-cCCCEEEEEeCCCcEEEEEe
Q 007229 220 KSGEKIGEFSSED----G----------HHGSIYAVSWS-PDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 220 ~~~~~~~~~~~~~----~----------~~~~v~~i~~~-~~~~~l~~~~~dg~i~iw~~ 264 (612)
+|.......... + .-.....|+++ +++.++++-...+.|+.+++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 554332221100 0 11347789999 56665555555677887776
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.6e-05 Score=67.09 Aligned_cols=230 Identities=11% Similarity=0.050 Sum_probs=135.1
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec---cCCCceEEEEECCCCCEEEEeeCcCeE-EEeecCCCce
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG---EHGYPVTVARYSPNGEWIASADVSGSV-RIWGTHNGFV 93 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~s~d~~~las~~~d~~i-~iwd~~~~~~ 93 (612)
...+.+++|+| ++.++++..+.|+. ..+.|+.-..+. .+...+..+.+.++++.++.+. +|.| +-+| .++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCC
Confidence 34688899987 55556655665543 445555433332 2445678888888888777764 5543 2222 2332
Q ss_pred eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEE-ecC-Cceeeee-ccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 94 LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFM-WDS-GTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 94 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~-~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
-..........+..+++.|++++++++.... ++. .+. ++.-..+ ......+..+++.+++. +...+.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~------~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGS------FYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSS------EEEEECTTCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCc------EEEEeCCCCCceeECCCCCCCccceeEECCCCC--EEEEeCCc
Confidence 2222334456789999999998877664433 222 332 2222221 23456788999999986 44555678
Q ss_pred eEEEEeCCCCeeeeccc----ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC
Q 007229 171 LVNFYEGPPFKFKLSHR----EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 246 (612)
.+++.+...++.-..+. .+...+.++++.+++..+++ +.++.+ .+....|+.-..+.........+..+.|.++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~ 303 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP 303 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC
Confidence 88777433233222221 12345889999988776555 457766 4555556655544211123456788888866
Q ss_pred CCEEEEEeCCCcEEEEE
Q 007229 247 GKKVLTVSADKSAKVWE 263 (612)
Q Consensus 247 ~~~l~~~~~dg~i~iw~ 263 (612)
++ +++++.+|.|.-++
T Consensus 304 ~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 304 DQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TE-EEEECSTTEEEEEC
T ss_pred Cc-eEEEcCCceEEEEc
Confidence 55 66667888765554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=8.2e-05 Score=67.14 Aligned_cols=205 Identities=7% Similarity=-0.069 Sum_probs=127.7
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCC----CceeeEeccCCCceEEEEECCCCC-EEEEeeCcCeEEEeecCCC
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDK----PLHVEFYGEHGYPVTVARYSPNGE-WIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~ 91 (612)
..+.+++|+++++.|..+. ++.|..+++++ ......+...-.....+++.+.+. +.++-...+.|.+.+....
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 3577999999888777776 58999999886 232333333334568999997554 4455556789999998765
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. ..............+++.|++.+|..+...... +|+..+ .|+....+ ...-.....++++|++..+.++-...
T Consensus 110 ~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~---~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~ 185 (316)
T 1ijq_A 110 K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA---KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185 (316)
T ss_dssp S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSC---EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred c-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCC---eEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence 4 332333344578899999977777666543211 344444 34433333 23345678999999888666777777
Q ss_pred CeEEEEeCCCCeeeeccc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 170 FLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
+.|..+|+.......... ........+++. .+...++-...+.|..++..+++....+
T Consensus 186 ~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 899999987432221111 122345677774 3444444445677888887777665555
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.3e-05 Score=64.81 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=114.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCce-EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRR-VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF 182 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 182 (612)
....+.|++ +..+.+.+..+ .+.++..+.++++.+....-.... -..+++. ++.+.+..-.++.+.+||..+++.
T Consensus 22 ftqGL~~~~-~~LyestG~~g-~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETG-RSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTT-SCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccEEEEC-CEEEEECCCCC-CceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 467899986 55555555543 336888889999998887643322 1334444 444566667789999999999999
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcc---ccEEEEEEecCCCEEEEEeCCCcE
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH---GSIYAVSWSPDGKKVLTVSADKSA 259 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~~~dg~i 259 (612)
+.++.....+ .. ++++++.|+.+..++.|.++|.++.+.+..+.... +. ..+..+.+. +|+..+..-.+..|
T Consensus 98 ~~ti~~~~~G-wg--lt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 98 RARFRYPGEG-WA--LTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp EEEEECSSCC-CE--EEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEeCCCCc-eE--EeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 9887643322 33 34677778777778999999999999988885421 11 345566666 67655555467799
Q ss_pred EEEEeecCCCCCeeEeeeecc
Q 007229 260 KVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~ 280 (612)
.+.|. .+++.+..+...
T Consensus 173 ~vIDp----~tG~V~~~idl~ 189 (243)
T 3mbr_X 173 ARIDP----ASGKVVAWIDLQ 189 (243)
T ss_dssp EEECT----TTCBEEEEEECG
T ss_pred EEEEC----CCCCEEEEEECC
Confidence 99999 899998888755
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00015 Score=67.78 Aligned_cols=208 Identities=7% Similarity=-0.090 Sum_probs=131.8
Q ss_pred CCceeEEEEccCCCEEEEec--CCEEEEEeCCC----CceeeEeccCCCceEEEEECCC-CCEEEEeeCcCeEEEeecCC
Q 007229 18 RGRGILISGNPKTDTILYCN--GRSVLIRYLDK----PLHVEFYGEHGYPVTVARYSPN-GEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~s~d-~~~las~~~d~~i~iwd~~~ 90 (612)
...+.+++|++.++.|.... .+.|..++++. ......+...-.....+++.+. +++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 34778999999888887775 68899999876 2334444445567889999985 44445555678899999887
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF 170 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 170 (612)
.. ....+.........+++.|.+.+|..+...... .|.....+...........-.....|+++|++..+.++-...+
T Consensus 191 ~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~-~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 191 VK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp CS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSC-CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred Cc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCC-EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 65 333333344568899999977777665533211 2344444422222222334467889999998886666666778
Q ss_pred eEEEEeCCCCeeeecccc--cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 171 LVNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.|..+|+........... .......+++. .+..+.+-...+.|..+|..+|+.+..+
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 999999865433222221 22345567763 3334444455678888887778776666
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.57 E-value=0.0011 Score=68.26 Aligned_cols=518 Identities=10% Similarity=-0.013 Sum_probs=260.5
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEe-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeee
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~ 96 (612)
...|.++.-..+|..-+ +...-+..||-.+-+..... ......|.++....+|. |-.|+.+| +..||..+.+. ..
T Consensus 21 ~n~V~~I~qD~~G~lWi-gT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f-~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWI-GSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRY-EQ 96 (758)
T ss_dssp CCCEEEEEECTTSCEEE-EESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEE-CC
T ss_pred cceEEEEEECCCCCEEE-EECCCccccCCCceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEE-EC
Confidence 45789999999986544 44444666763321111100 11245689988888775 44444555 78899887642 11
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec-----cCCceEEEEEEcCCCCEEEEEeecC
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD-----GHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
........|.++.. .+| .|..++.++ ++.++ +++ +..+. .....|.++...+++. +..++.+
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~G------l~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~ 165 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALNG------LYTYQLQSRK-LTSFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYN 165 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETTE------EEEEETTTCC-EEEECHHHHCCSCSCEEEEEECTTCC--EEEEETT
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCCc------ceeEeCCCCe-EEEeccCCCCcCCCeEEEEEEcCCCC--EEEEeCC
Confidence 11112235666654 355 444455443 44444 333 22221 1234688888888887 4445544
Q ss_pred CeEEEEeCCCCeeeec-ccc----cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 170 FLVNFYEGPPFKFKLS-HRE----HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
| +..++..+++.... ... ....|.++...+++..|..|+. +-+..+|..+++... +.. .....|.++...
T Consensus 166 G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~--l~~~~i~~i~~d 240 (758)
T 3ott_A 166 G-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEA--FHNNSIKSLALD 240 (758)
T ss_dssp E-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEE--EEEEEEEEEEEC
T ss_pred C-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccC--CCCCeEEEEEEc
Confidence 4 77888777654321 111 1234888888777776665664 458889987665432 211 123458888888
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeec
Q 007229 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFS 324 (612)
Q Consensus 245 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 324 (612)
++|.+.+ ++.+ -+.+++. .+.+. ..+...... ...
T Consensus 241 ~~g~lWi-gT~~-Gl~~~~~----~~~~~-~~~~~~~~~------------------------------------~~~-- 275 (758)
T 3ott_A 241 GNGDLLA-GTDN-GLYVYHN----DTTPL-QHIIHDSRN------------------------------------IQS-- 275 (758)
T ss_dssp TTCCEEE-EETT-EEEEECC----TTSCC-EEECCCTTC------------------------------------TTS--
T ss_pred CCCCEEE-EeCC-ceeEEec----CCCcE-EEEEcCCCC------------------------------------cCc--
Confidence 7777544 4444 5777776 33322 111111000 000
Q ss_pred CcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec-----eecccceEEEEe-eccEEEEecCCCeEEEEecC
Q 007229 325 GHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE-----KKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 325 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-----~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~ 398 (612)
-....|.++.... ...+-.|+..| +.++........... ......|.++.. ..+.+..++.+ -+..++..
T Consensus 276 l~~~~i~~i~~D~--~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~ 351 (758)
T 3ott_A 276 LTNNIIWNIFADQ--EHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDP 351 (758)
T ss_dssp CSCSCEEEEEECT--TCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCT
T ss_pred CCcCeEEEEEEcC--CCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeeccc
Confidence 0122344443332 23344444445 433322111110000 002345777777 44566677655 45556554
Q ss_pred CCCCCccceeccC------CCcceeeecCCCCcEEEEEeeccEEEeecc-cceeeec--------ccceEEEEEEccCCC
Q 007229 399 EGECGDAEHIDVG------SQPLDLSLALSSPELALVSTESGVILLDSL-KVMSKID--------LGFTVTACAIAPDGS 463 (612)
Q Consensus 399 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~i~~~~~s~~~~ 463 (612)
++........... ....-.++..+....+-++..+++..++.. .....+. ....|.++...++++
T Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 431 (758)
T 3ott_A 352 AGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ 431 (758)
T ss_dssp TSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE
T ss_pred ccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC
Confidence 4321111111110 011122333333333444446788888732 2222221 123477888777776
Q ss_pred eEEEEecCCeEEEEEccCc------ccccceeec---c-ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 464 EAIVGGQNGKLHIYSISGN------TLTEEMVLE---K-HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 464 ~l~~~~~dg~v~i~d~~~~------~~~~~~~~~---~-~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
+ -+|+..+-+.++|..+. .......+. + ....|.++...++|.+.+.++..+-+..+|..+++......
T Consensus 432 l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~ 510 (758)
T 3ott_A 432 L-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFA 510 (758)
T ss_dssp E-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECT
T ss_pred E-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecC
Confidence 4 44666566888886531 110000111 1 12358999999999877643344558888988776542111
Q ss_pred cc--cccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc-cccCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 534 LF--HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA-HLGGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 534 ~~--~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
.. ....+.++....+|.+.+. +..| +..++..+....... ..+ ....|.++... ...|..++..| |..++.+
T Consensus 511 ~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~-~g~lWi~t~~G-l~~~~~~ 585 (758)
T 3ott_A 511 DELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSIS-FGSFSNNEILSMTCV-KNSIWVSTTNG-LWIIDRK 585 (758)
T ss_dssp TTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCC-CCC---CCEEEEEEE-TTEEEEEESSC-EEEEETT
T ss_pred CCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEec-ccCCCccceEEEEEC-CCCEEEECCCC-eEEEcCC
Confidence 11 1345788888888876654 4455 888887662211111 111 12456776554 44555555565 5555544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00022 Score=67.31 Aligned_cols=240 Identities=9% Similarity=0.034 Sum_probs=141.6
Q ss_pred ceeEEEEcc-CCCEEEEec--CCEEEEEeCCCCceeeEeccC---CCceEEEEE-------CCCCCEEEEeeCcC-----
Q 007229 20 RGILISGNP-KTDTILYCN--GRSVLIRYLDKPLHVEFYGEH---GYPVTVARY-------SPNGEWIASADVSG----- 81 (612)
Q Consensus 20 ~v~~~~~s~-d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~-------s~d~~~las~~~d~----- 81 (612)
....|+|+| ++..|.++. .+.|++.|++++.....+... -.....++| +++|++|..+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899999 455565555 368999999987776654432 235889999 99999666665443
Q ss_pred --eEEEeecCC-Cceee----eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-------CCce--------
Q 007229 82 --SVRIWGTHN-GFVLK----NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-------SGTT-------- 139 (612)
Q Consensus 82 --~i~iwd~~~-~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-------~~~~-------- 139 (612)
.|.+.+... +.... ..+.. -.....++++|++..|.++...... +..++.+ ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~--V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQ--VFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTE--EEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCE--EEEEecccccccccCceeeccccccc
Confidence 266665443 22110 22222 2345678899977777766655542 4444444 3332
Q ss_pred ---eeee-c-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEe--CCCCeee--ecccc------cc---------cceE-
Q 007229 140 ---VGDF-D-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE--GPPFKFK--LSHRE------HS---------NFVN- 194 (612)
Q Consensus 140 ---~~~~-~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd--~~~~~~~--~~~~~------~~---------~~v~- 194 (612)
...+ . +.......++|+|+++++.++-...+.|+.++ ...+... ..+.+ .. ....
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 1111 1 22345679999999996566667788999855 3433221 11111 10 1234
Q ss_pred EEEEC-------CCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC-----------C----------ccccEEEEEEecC
Q 007229 195 CIRFS-------PDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED-----------G----------HHGSIYAVSWSPD 246 (612)
Q Consensus 195 ~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------~----------~~~~v~~i~~~~~ 246 (612)
.++.. +++.+.++=...+.|+.++ .+|.. .++.-.. + .-.....|+++++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 44443 4565555555678899998 45643 3331100 1 1134778999996
Q ss_pred -CCEEEEEeCCCcEEEEEe
Q 007229 247 -GKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 247 -~~~l~~~~~dg~i~iw~~ 264 (612)
+.++++=.....|+.+++
T Consensus 455 ~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 665555555678888888
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00051 Score=69.74 Aligned_cols=237 Identities=11% Similarity=-0.049 Sum_probs=144.6
Q ss_pred CEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCce---eeeeeeecCCCeE
Q 007229 31 DTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFV---LKNEFKVLSGRID 106 (612)
Q Consensus 31 ~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~ 106 (612)
.+|+++....|+..++........+. ....+..++|.+....|. +-...+.|+.+++..... ....+........
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 46777777888888888766555444 456778999999555444 545667899999875321 2222332345677
Q ss_pred EEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCCCCeeeec
Q 007229 107 DLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGPPFKFKLS 185 (612)
Q Consensus 107 ~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~ 185 (612)
.|++.+.++.|..+..... .|.+...+.......+.........|++.|.+.+++++-... +.|...++........
T Consensus 475 GLAvD~~~~~LY~tD~~~~--~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp EEEEETTTTEEEEEETTTT--EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred eeeeeecCCcEEEEecCCC--eEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 8999998887777765544 355555553333333334556689999999877656665333 7888888875544333
Q ss_pred ccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE-eCCCcEEEEE
Q 007229 186 HREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWE 263 (612)
Q Consensus 186 ~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~ 263 (612)
+...-.....|++.+.+..|+.+.. .+.|...++........+. ....-....+|++.. .+|+.+ ...+.|...+
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~-~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFE--DKVFWTDIINEAIFSAN 629 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec-CCCccCCCCEEEEeC--CEEEEEECCCCEEEEEe
Confidence 3334457889999988777777654 4678888875443333331 112223445677643 344444 3456677776
Q ss_pred eecCCCCCeeEeee
Q 007229 264 ILEDGSGGRVIKTF 277 (612)
Q Consensus 264 ~~~~~~~~~~~~~~ 277 (612)
. .+++.+..+
T Consensus 630 k----~tG~~~~~l 639 (791)
T 3m0c_C 630 R----LTGSDVNLL 639 (791)
T ss_dssp T----TTCCCCEEE
T ss_pred C----CCCcceEEe
Confidence 5 455444443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00017 Score=68.15 Aligned_cols=60 Identities=10% Similarity=0.213 Sum_probs=44.1
Q ss_pred ceEEEEECC-CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 192 FVNCIRFSP-DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 192 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
....|+++| ++..|+++...+.|+.+|+..+...... ........++|++++++|+++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~----~~~~~P~~ia~d~~G~~lyvad~ 198 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY----SGLSKVRTICWTHEADSMIITND 198 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE----CCCSCEEEEEECTTSSEEEEEEC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe----cCCCCcceEEEeCCCCEEEEEeC
Confidence 467889998 4666777766688999998776554444 34456889999999996666654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00021 Score=64.23 Aligned_cols=204 Identities=7% Similarity=-0.099 Sum_probs=128.8
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCcee-eEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCCceee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHV-EFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNGFVLK 95 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~~~~~ 95 (612)
...+++|++.++.|..+. ++.|..++++.+... ..+...-.....+++.+.+ ++.++-...+.|.+.++.... ..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EE
Confidence 567899999877777775 689999998876432 2233333456789999754 444555567889999987654 22
Q ss_pred eeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecCCeEE
Q 007229 96 NEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173 (612)
Q Consensus 96 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 173 (612)
............+++.|.+.+|..+...... +|+..+ .|+....+ ...-.....++++|++..+.++-...+.|.
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~---~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~ 191 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVP---KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 191 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSC---EEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCC---EEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence 2233344567899999987777666533111 344444 23333222 233456789999998776667777788999
Q ss_pred EEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 174 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
.+|+..........+.......+++.. +..+.+-...+.|..++..+|+....+
T Consensus 192 ~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 192 KSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 999864333222232334566777753 334444445677888888777766555
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00073 Score=61.82 Aligned_cols=228 Identities=14% Similarity=0.048 Sum_probs=125.5
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCc-eeeEe---ccCCCceEEEEECCC---CCEEEEe-eC---c----CeEE
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPL-HVEFY---GEHGYPVTVARYSPN---GEWIASA-DV---S----GSVR 84 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~-~~~~~---~~h~~~v~~~~~s~d---~~~las~-~~---d----~~i~ 84 (612)
....++|.|||+++++-.++.|.+++. +++ .+..+ .........|+|+|+ +..|..+ +. + ..|.
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 567999999999777766899999873 444 22111 122456889999998 4444433 32 3 5788
Q ss_pred EeecCCCc------e-eeeeeee-cCCCeEEEEECCCCCEEEEEeCCCCe--------eeEEEEEec-CCce--------
Q 007229 85 IWGTHNGF------V-LKNEFKV-LSGRIDDLQWSPDGLRIVACGDGKGK--------SFVRAFMWD-SGTT-------- 139 (612)
Q Consensus 85 iwd~~~~~------~-~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~--------~~i~i~~~~-~~~~-------- 139 (612)
.|+..... . +...+.. .......++|.|||..+++.++.... ..-+|+.++ .++.
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~ 188 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN 188 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence 88876541 1 1111221 11234679999999877776543210 011355554 2220
Q ss_pred eeee-ccCCceEEEEEEcC-CCCEEEEEeec-CC--eEEEEeCCCCe------------------eeecccccccceEEE
Q 007229 140 VGDF-DGHSRRVLSCEFKP-TRPFRIATCGE-DF--LVNFYEGPPFK------------------FKLSHREHSNFVNCI 196 (612)
Q Consensus 140 ~~~~-~~~~~~v~~~~~~~-~~~~~l~~~~~-d~--~i~~wd~~~~~------------------~~~~~~~~~~~v~~~ 196 (612)
...+ .++ .....++|+| ++. ++++-.. +. .|.+.. .+. ....+.........+
T Consensus 189 ~~i~a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 189 SPIWSYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp CCEEEECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CcEEEEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 1111 122 2345789999 565 3444322 22 233322 111 111221122457788
Q ss_pred EEC-------CCCCeEEEEEcCCcEEEEecCCC-Cee--eeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 197 RFS-------PDGSKLISVSSDRKGLIYDGKSG-EKI--GEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 197 ~~s-------~~~~~l~~~~~dg~i~vwd~~~~-~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
+|. .+|+++++.-..+.|...+++.. +.. ..+ .......+..+++.|||.+.++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~--~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF--FKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE--CTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee--ccCCCCCeeEEEECCCCcEEEEEe
Confidence 884 46766665555677888887753 222 122 112345789999999997666553
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0002 Score=65.67 Aligned_cols=225 Identities=11% Similarity=0.023 Sum_probs=122.1
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeE--e---ccCCCceEEEEECCC---CCEEEEeeC-c-----CeEEE
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEF--Y---GEHGYPVTVARYSPN---GEWIASADV-S-----GSVRI 85 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~--~---~~h~~~v~~~~~s~d---~~~las~~~-d-----~~i~i 85 (612)
....++|.|||+++++-..+.|.+++ +++.... + .........++|+|| +.+|..+.. . +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 56799999999977766689999998 3432211 1 122456889999998 555544432 2 67888
Q ss_pred eecCCCce-----eeeeeee---cCCCeEEEEECCCCCEEEEEeCCCCe--------eeEEEEEec-CCc----------
Q 007229 86 WGTHNGFV-----LKNEFKV---LSGRIDDLQWSPDGLRIVACGDGKGK--------SFVRAFMWD-SGT---------- 138 (612)
Q Consensus 86 wd~~~~~~-----~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~~--------~~i~i~~~~-~~~---------- 138 (612)
++...... +...+.. .......++|.|||...++.++.... ..-+|+.++ .++
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 88775421 1111221 11134689999999777765543210 012355554 221
Q ss_pred ---eeeeeccCCceEEEEEEcC-CCCEEEEEeecCCe--------EEEEeCCCCe------------------eeecccc
Q 007229 139 ---TVGDFDGHSRRVLSCEFKP-TRPFRIATCGEDFL--------VNFYEGPPFK------------------FKLSHRE 188 (612)
Q Consensus 139 ---~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~--------i~~wd~~~~~------------------~~~~~~~ 188 (612)
....+..--.....++|+| ++. +.++-..... |.+. ..+. ....+ .
T Consensus 190 ~~~~~~i~a~G~rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~-~ 265 (352)
T 2ism_A 190 RGARPEVYSLGHRNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFW-P 265 (352)
T ss_dssp TTSCTTEEEECCSEECCCEECTTTCC-EEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC-T
T ss_pred CCCCccEEEEcCCCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEec-C
Confidence 1111111113466789999 565 3444332222 3332 2221 11122 1
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe------eeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
+......++| .+|+++++....+.|...+++.... ...+. .....+..+++.|||.+.++..
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence 2234567777 4666555555566777777664431 11221 1235788999999997666653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.001 Score=62.83 Aligned_cols=199 Identities=11% Similarity=0.080 Sum_probs=113.3
Q ss_pred ceEEEEECCC--CCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CC
Q 007229 61 PVTVARYSPN--GEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SG 137 (612)
Q Consensus 61 ~v~~~~~s~d--~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~ 137 (612)
....++|+|+ +..|..+...+.|+.+|..++. +. .+.........++|+++|+ |..+...+....-.+.... .+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-v~-~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-VD-IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-EE-EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-EE-EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4568999995 3445555444899999998775 32 3333455689999999999 4444332100001122222 11
Q ss_pred cee--eeeccCCceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCeeeecc-c-ccccceEEEEECCCCCeEEEEEc-C
Q 007229 138 TTV--GDFDGHSRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFKFKLSH-R-EHSNFVNCIRFSPDGSKLISVSS-D 211 (612)
Q Consensus 138 ~~~--~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~l~~~~~-d 211 (612)
... ..+. .......++++| ++. +.++-..++.|+.+|..++.....+ . +....-..++|+|++++|+.+.. .
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 111 1111 223446688999 555 5666667889999998877652222 1 11223346999999996665554 6
Q ss_pred CcEEEEecC--CCCee--eeeecc---CC---------ccccEEEEEE---------ecCCCEEEEEeCCCcEEEEEe
Q 007229 212 RKGLIYDGK--SGEKI--GEFSSE---DG---------HHGSIYAVSW---------SPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 212 g~i~vwd~~--~~~~~--~~~~~~---~~---------~~~~v~~i~~---------~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+.|+.++.. ++... ..+... .+ .-.....+++ .+++++.++-...+.|+.++.
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 788887765 23211 111100 00 1123667888 566665555555567777763
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00049 Score=61.03 Aligned_cols=200 Identities=12% Similarity=0.216 Sum_probs=126.4
Q ss_pred CCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECC----CCCE--EEEEeCCC--CeeeEEEEEec-CCcee
Q 007229 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP----DGLR--IVACGDGK--GKSFVRAFMWD-SGTTV 140 (612)
Q Consensus 70 d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~----~~~~--l~~~~~~~--~~~~i~i~~~~-~~~~~ 140 (612)
...+++.....+-+.+||+ +++.+ +.+.. +.++.+..-| .|+. |+.+++.. .. .+.++..+ ....+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l-~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n-~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKML-HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN-TIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEE-EEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCC-EEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEE-EEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCC-eEEEEEECCCCCce
Confidence 3455666667788999999 66633 33432 5666666655 2333 55555543 22 67888776 23335
Q ss_pred eeecc------CC-ceEEEEEE--cCC-CCEEEEEeecCCeEEEEeCC-------CCeeeecccccccceEEEEECCCCC
Q 007229 141 GDFDG------HS-RRVLSCEF--KPT-RPFRIATCGEDFLVNFYEGP-------PFKFKLSHREHSNFVNCIRFSPDGS 203 (612)
Q Consensus 141 ~~~~~------~~-~~v~~~~~--~~~-~~~~l~~~~~d~~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~ 203 (612)
..+.. .. ..+..+++ +|. +.+.++....+|.+..|++. +.+.+.++.- ...+..+...+...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC
Confidence 54422 11 55666777 774 44457777788999999872 3345555543 35688889998888
Q ss_pred eEEEEEcCCcEEEEecC-----CCCeeeeeeccCCccccEEEEEEe--cCCC-EEEEEe-CCCcEEEEEeecCCC-CCee
Q 007229 204 KLISVSSDRKGLIYDGK-----SGEKIGEFSSEDGHHGSIYAVSWS--PDGK-KVLTVS-ADKSAKVWEILEDGS-GGRV 273 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~v~~i~~~--~~~~-~l~~~~-~dg~i~iw~~~~~~~-~~~~ 273 (612)
.|+.+-++..|..++.+ +++.+..+. .......+..|++. ++++ +|++.+ .+.++.+||. . +.+.
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr----~~~~~~ 267 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR----QGKNKY 267 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES----STTCCE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC----CCCCcE
Confidence 99999998777777754 334444441 11233478888884 4555 666665 5679999998 4 5667
Q ss_pred Eeeeecc
Q 007229 274 IKTFASS 280 (612)
Q Consensus 274 ~~~~~~~ 280 (612)
+..|...
T Consensus 268 vg~f~Ig 274 (355)
T 3amr_A 268 VADFRIT 274 (355)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7776543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0012 Score=67.12 Aligned_cols=206 Identities=8% Similarity=-0.077 Sum_probs=128.1
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCCC----ceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCC
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDKP----LHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~ 91 (612)
..+.+++|++.+..|.... .+.|+.+++... .....+...-.....|++.+.++.|. +-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 4677899999777777665 578988888753 33344444556678899998775555 4456789999999866
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
. ....+...-.....|++.|.+.+|..+...... .|.....+.......+.........|++.+.+..+.++-...+.
T Consensus 504 ~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~-~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 504 K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSC-EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred e-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCC-eEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 5 333333444568999999987777666543211 34444444333333333344678999999887766666666788
Q ss_pred EEEEeCCCCeeeecccc--cccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeee
Q 007229 172 VNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~ 228 (612)
|...++........+.. .-....+|++. +.+|+.+. ..+.|...|..+|+.+..+
T Consensus 582 I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 582 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 99999865443333322 12234566653 33555444 3566777776666655554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0016 Score=59.57 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=127.0
Q ss_pred ceeEEEEccCCC-EEEEecCCEEEEEeCCCCceeeE-------eccCCCceEEEEECCC---CCEEEEe-eC-------c
Q 007229 20 RGILISGNPKTD-TILYCNGRSVLIRYLDKPLHVEF-------YGEHGYPVTVARYSPN---GEWIASA-DV-------S 80 (612)
Q Consensus 20 ~v~~~~~s~d~~-~l~~~~~~~i~i~~~~~~~~~~~-------~~~h~~~v~~~~~s~d---~~~las~-~~-------d 80 (612)
....|+|.|||+ ++++-..+.|++++.+ +..... ..........++|+|| +.+|..+ +. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 567999999999 6666668899999854 322111 1122446789999996 4444433 22 2
Q ss_pred CeEEEeecCCCc----eeeeeeeec------CCCeEEEEECCCCCEEEEEeCCCC--------eeeEEEEEec-CCc---
Q 007229 81 GSVRIWGTHNGF----VLKNEFKVL------SGRIDDLQWSPDGLRIVACGDGKG--------KSFVRAFMWD-SGT--- 138 (612)
Q Consensus 81 ~~i~iwd~~~~~----~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~~--------~~~i~i~~~~-~~~--- 138 (612)
..|..|++.... .....+... ...-..++|.|||.+.++.++... ...-+|+.++ .++
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 357667765431 111111111 112457999999977676655321 0001344444 222
Q ss_pred ----------eeeeeccCCceEEEEEEcC-CCCEEEEEe-ecCCeEEEEeCCCCee------------------------
Q 007229 139 ----------TVGDFDGHSRRVLSCEFKP-TRPFRIATC-GEDFLVNFYEGPPFKF------------------------ 182 (612)
Q Consensus 139 ----------~~~~~~~~~~~v~~~~~~~-~~~~~l~~~-~~d~~i~~wd~~~~~~------------------------ 182 (612)
....+..--.....++|.| ++. +.++- +.++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1111211224577899999 554 33332 2222122222221111
Q ss_pred -------eecccccccceEEEEECC-------CCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 183 -------KLSHREHSNFVNCIRFSP-------DGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 183 -------~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
...+ .+...+..++|.. +|+++++....+.|...+++.++..............+..+++.|||.
T Consensus 257 ~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 0011 1223567778853 466666655677888888776544332211112235789999999998
Q ss_pred EEEEEeCCCcEEEEEe
Q 007229 249 KVLTVSADKSAKVWEI 264 (612)
Q Consensus 249 ~l~~~~~dg~i~iw~~ 264 (612)
+.++.. +..=+||.+
T Consensus 336 lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 336 LYVLTD-ESSGELLKV 350 (353)
T ss_dssp EEEEEC-STTEEEEEE
T ss_pred EEEEEe-CCCCEEEEE
Confidence 655433 223355655
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=81.09 Aligned_cols=239 Identities=12% Similarity=-0.047 Sum_probs=135.6
Q ss_pred EEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCCC---ceeeeeeeecCCCeEE
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHNG---FVLKNEFKVLSGRIDD 107 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~i~~ 107 (612)
+|+++..+.|+..++.+.+....+. ....+..++|.+++..|..+. ..+.|..+++.+. ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 4555566788888888776555443 334567899999776666554 5578999998751 1111122112234567
Q ss_pred EEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCCCCeeeecc
Q 007229 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~ 186 (612)
+++.+.+..|+.+..... .|.+...+.......+.........+++.|.+.+++++-... +.|...++........+
T Consensus 458 lavD~~~g~LY~tD~~~~--~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp EECCCSSSBCEECCTTTS--CEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred EEEEeeCCcEEEEeccCC--eEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 888876666655543332 244444443332222333334567889999776555554333 67877776533222112
Q ss_pred cccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
...-.....|+|+|++..|+.+. ..+.|..+++.... ...+............|++..+ .++++....+.|..++.
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~- 612 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR- 612 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET-
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc-
Confidence 22234567899999877666655 45679999986433 3333111111233445666543 44444455678999887
Q ss_pred cCCCCCeeEeeeec
Q 007229 266 EDGSGGRVIKTFAS 279 (612)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (612)
.+++.+..+..
T Consensus 613 ---~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 ---LTGSDVNLLAE 623 (699)
T ss_dssp ---TTEEEEECCCT
T ss_pred ---cCCCceEEeec
Confidence 67777666543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0015 Score=58.04 Aligned_cols=199 Identities=15% Similarity=0.194 Sum_probs=121.6
Q ss_pred EEEEccC---CCEEEEe-cCCEEEEEeCCCCceeeEeccCCCceEEEEECCC----CC---EEEEee-C--cCeEEEeec
Q 007229 23 LISGNPK---TDTILYC-NGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPN----GE---WIASAD-V--SGSVRIWGT 88 (612)
Q Consensus 23 ~~~~s~d---~~~l~~~-~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d----~~---~las~~-~--d~~i~iwd~ 88 (612)
++-.+|. ..+++.. ..+.+.+||+ +|+.++.+.. +.++.+..-|+ |+ ++++.. . +++|.+|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 5555553 3343333 3689999999 7888887754 56777777773 22 233333 3 578999977
Q ss_pred C--CCceeeeeee-----ecC-CCeEEEEE--CCC-CCEEEEEeCCCCeeeEEEEEec-------CCceeeeeccCCceE
Q 007229 89 H--NGFVLKNEFK-----VLS-GRIDDLQW--SPD-GLRIVACGDGKGKSFVRAFMWD-------SGTTVGDFDGHSRRV 150 (612)
Q Consensus 89 ~--~~~~~~~~~~-----~~~-~~i~~~~~--s~~-~~~l~~~~~~~~~~~i~i~~~~-------~~~~~~~~~~~~~~v 150 (612)
. ++. +...-. ... ..+..+++ +|. +++.+..+...+ .+..|... +.+.+++|.-. ..+
T Consensus 107 Dp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G--~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~ 182 (355)
T 3amr_A 107 DGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEG--EFEQYELKADKNGYISGKKVRAFKMN-SQT 182 (355)
T ss_dssp CTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSS--EEEEEEEEECTTSCEEEEEEEEEECS-SCE
T ss_pred CCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCC--eEEEEEEEeCCCCcccceEEEEecCC-CCc
Confidence 4 433 322211 112 56777888 774 554344443333 34443331 33566776643 467
Q ss_pred EEEEEcCCCCEEEEEeecCCeEEEEeCC-----CCeeeeccc-c-cccceEEEEE--CCCCC-eEEEEE-cCCcEEEEec
Q 007229 151 LSCEFKPTRPFRIATCGEDFLVNFYEGP-----PFKFKLSHR-E-HSNFVNCIRF--SPDGS-KLISVS-SDRKGLIYDG 219 (612)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~-----~~~~~~~~~-~-~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~vwd~ 219 (612)
..+...+... .|..+-++.-|..++.+ +++.+..+. + -...+..|++ .++++ +|++++ .+.+..+||.
T Consensus 183 EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 183 EGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ceEEEcCCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 8888888877 58888888777777755 344444332 2 2346888888 56666 677666 4678999998
Q ss_pred C-CCCeeeeee
Q 007229 220 K-SGEKIGEFS 229 (612)
Q Consensus 220 ~-~~~~~~~~~ 229 (612)
+ +.+.+..+.
T Consensus 262 ~~~~~~vg~f~ 272 (355)
T 3amr_A 262 QGKNKYVADFR 272 (355)
T ss_dssp STTCCEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 6 566666663
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0011 Score=58.82 Aligned_cols=214 Identities=8% Similarity=0.002 Sum_probs=128.7
Q ss_pred EccCCCEEEEec---CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--------------CeEEEeec
Q 007229 26 GNPKTDTILYCN---GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--------------GSVRIWGT 88 (612)
Q Consensus 26 ~s~d~~~l~~~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--------------~~i~iwd~ 88 (612)
|+++|.+|.+.. ++.|+..+.+.....+ +... .+--++++|++|.-+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~-l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHK-LSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEE-EEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEE-ccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 457899999986 5788888877655444 4432 245668999999877543 46777777
Q ss_pred CCCceeeeeeeecCCCeEEEEECCCCCEEEEEe--CCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEE
Q 007229 89 HNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACG--DGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIAT 165 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 165 (612)
...+. ..+... ....|++++++|+... ..+. -.|+..+ .+.....+..+.. .+|+|+++.+..+
T Consensus 96 dg~~~--~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~---~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t 162 (302)
T 3s25_A 96 NGHGS--TVLDPD----PCIYASLIGNYIYYLHYDTQTA---TSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYN 162 (302)
T ss_dssp TSCCC--EEEECS----CEEEEEEETTEEEEEEESSSSC---EEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEE
T ss_pred CCCcc--eEeecC----CccEEEEeCCEEEEEeecCCCC---ceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEE
Confidence 77652 122211 1237888999999876 2222 2455555 3444445554433 4678889876666
Q ss_pred eecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCC--cEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 166 CGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR--KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 166 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
......|..-++..+.....+.+ ... ..++|++.+|+-....+ .|..-++.... ...+. ...+ ..|
T Consensus 163 ~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-----~~~~--~~~ 230 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT-----EANI--EHY 230 (302)
T ss_dssp CTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-----CSCE--EEE
T ss_pred eCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-----CCCc--ceE
Confidence 65567888888877665433332 222 34569999988776543 46666665444 33331 1223 347
Q ss_pred ecCCCEEEEEeCCCcEEEEEeecCCC
Q 007229 244 SPDGKKVLTVSADKSAKVWEILEDGS 269 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~~~~~~ 269 (612)
+|++++|..+...+.-.|+.+..++.
T Consensus 231 ~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 231 NVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EECCCEEEEEECCCCcEEEEEECCCC
Confidence 88888887764332334555543333
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.001 Score=58.52 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=102.7
Q ss_pred EEEEccCCCEEEEec--CCEEEEEeCCCCceeeE-ecc----C--CCceEEEEE---CCCCCEEEEee------------
Q 007229 23 LISGNPKTDTILYCN--GRSVLIRYLDKPLHVEF-YGE----H--GYPVTVARY---SPNGEWIASAD------------ 78 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~-~~~----h--~~~v~~~~~---s~d~~~las~~------------ 78 (612)
+++|.+....+.+++ .+.|..||...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 678988777777776 79999999986654333 222 1 124689999 68988888643
Q ss_pred -CcCeEEEeecC---CCceeee-eeeec-----------CCCeEEEEECCCCCEEEEEeCC-CCeeeEEEEEec-CCcee
Q 007229 79 -VSGSVRIWGTH---NGFVLKN-EFKVL-----------SGRIDDLQWSPDGLRIVACGDG-KGKSFVRAFMWD-SGTTV 140 (612)
Q Consensus 79 -~d~~i~iwd~~---~~~~~~~-~~~~~-----------~~~i~~~~~s~~~~~l~~~~~~-~~~~~i~i~~~~-~~~~~ 140 (612)
.+..|..+|+. +++.+.. .+... ......++..++|+..++.+.. . .|+..+ .|+.+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~-----~I~rV~pdG~~~ 171 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP-----AIARVSADGKTV 171 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC-----EEEEECTTSCCE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC-----eEEEEeCCCCEE
Confidence 25779999999 6664321 11111 1248899999999999988776 5 477777 34433
Q ss_pred eeec------cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCC
Q 007229 141 GDFD------GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPF 180 (612)
Q Consensus 141 ~~~~------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 180 (612)
..+. ......+.|+++|++..+++..+ .|.+.-+|+...
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 3321 11123568999999996555555 999999998743
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0005 Score=62.04 Aligned_cols=197 Identities=9% Similarity=0.054 Sum_probs=118.5
Q ss_pred eEEEEccCCCEEEEe-------------cCCEEEEEeCCCC--ceee-Eecc-----CCCceEEEEECC--CCC-EEEEe
Q 007229 22 ILISGNPKTDTILYC-------------NGRSVLIRYLDKP--LHVE-FYGE-----HGYPVTVARYSP--NGE-WIASA 77 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~-------------~~~~i~i~~~~~~--~~~~-~~~~-----h~~~v~~~~~s~--d~~-~las~ 77 (612)
-.+++.|+|..++++ ..|.|.++|++++ +... .+.+ ..-....+.+.+ +|+ +|..+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 356788998777776 3789999999842 3221 1222 233566777755 454 44444
Q ss_pred e---CcCeEEEeecCCCceeee---eeeec-CCCeEEEEECCCCCEEEEEeCC-C-----------CeeeEEEEEecCCc
Q 007229 78 D---VSGSVRIWGTHNGFVLKN---EFKVL-SGRIDDLQWSPDGLRIVACGDG-K-----------GKSFVRAFMWDSGT 138 (612)
Q Consensus 78 ~---~d~~i~iwd~~~~~~~~~---~~~~~-~~~i~~~~~s~~~~~l~~~~~~-~-----------~~~~i~i~~~~~~~ 138 (612)
. .+.+|.+|++........ .+.+. -...+.+++.++|...++...- . ....-.++.++.++
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~ 212 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 212 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence 2 256788988876432222 22221 2357899999999877765410 0 00124577777653
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-Cee--eecccccccceEEEEECC-CCCeEEEEEcC-Cc
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKF--KLSHREHSNFVNCIRFSP-DGSKLISVSSD-RK 213 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d-g~ 213 (612)
+..+...-.....++|+||++.+.++-+..+.|..|++.. ++. ...+ ........+++.+ +|++.+++..+ +.
T Consensus 213 -~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~ 290 (355)
T 3sre_A 213 -VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMR 290 (355)
T ss_dssp -CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHH
T ss_pred -EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceE
Confidence 3333333455788999999997777777889999999753 322 1123 2245677888988 58866655533 34
Q ss_pred EEEEecC
Q 007229 214 GLIYDGK 220 (612)
Q Consensus 214 i~vwd~~ 220 (612)
|..|+.+
T Consensus 291 v~~~~P~ 297 (355)
T 3sre_A 291 IFFYDAE 297 (355)
T ss_dssp HHSCCTT
T ss_pred EEEECCC
Confidence 4444543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=79.22 Aligned_cols=205 Identities=8% Similarity=-0.063 Sum_probs=123.9
Q ss_pred CceeEEEEccCCCEEEEec--CCEEEEEeCCC----CceeeEeccCCCceEEEEECCCC-CEEEEeeCcCeEEEeecCCC
Q 007229 19 GRGILISGNPKTDTILYCN--GRSVLIRYLDK----PLHVEFYGEHGYPVTVARYSPNG-EWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~----~~~~~~~~~h~~~v~~~~~s~d~-~~las~~~d~~i~iwd~~~~ 91 (612)
..+.+++|++++..|..+. .+.|..+++.+ ......+...-.....+++.+.+ ++.++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3567899999888888876 57899999875 23222232222345678888644 44455456788999998866
Q ss_pred ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee-ccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF-DGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
. ....+.........+++.|++.+|+.+...... +|+..+ .+.....+ .........|+|+|++..+.++-...
T Consensus 486 ~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~---~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~ 561 (699)
T 1n7d_A 486 K-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPA---KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 561 (699)
T ss_dssp C-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSC---CEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTT
T ss_pred c-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCC---eEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCC
Confidence 4 332333233456788999977666655432211 255444 23322222 22234567899999877667777778
Q ss_pred CeEEEEeCCCCeeeeccc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeee
Q 007229 170 FLVNFYEGPPFKFKLSHR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 228 (612)
+.|..+++........+. ........|++..+ .++++....+.|..++..+++.+..+
T Consensus 562 ~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 562 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp TEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred CeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 899999986533222221 11223445555443 33444445678999998788777666
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0059 Score=57.69 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=44.2
Q ss_pred ceEEEEECC-CCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEE-------ecCCCEEEEEeCCC
Q 007229 192 FVNCIRFSP-DGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW-------SPDGKKVLTVSADK 257 (612)
Q Consensus 192 ~v~~~~~s~-~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~-------~~~~~~l~~~~~dg 257 (612)
....|+|+| +...|+.+.. .+.|++.|++++..................++| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 467899998 3555655554 467889998876665544221112346899999 99999777766554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0054 Score=55.12 Aligned_cols=230 Identities=12% Similarity=0.047 Sum_probs=126.0
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeE--e----ccCCCceEEEEECCC----CCEEEEe--eCcCeEEEe
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEF--Y----GEHGYPVTVARYSPN----GEWIASA--DVSGSVRIW 86 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~--~----~~h~~~v~~~~~s~d----~~~las~--~~d~~i~iw 86 (612)
....|+|.|||+++++-. .+.|++++..+++.... + .........|+|+|| +.+.++- ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 567999999999888887 79999998766654221 1 233567889999995 4443332 234566667
Q ss_pred ecCCCc----------eeeeeee-ecCCCeEEEEECCCCCEEEEEeCCCCe--------eeEEEEEec-CCce-------
Q 007229 87 GTHNGF----------VLKNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGK--------SFVRAFMWD-SGTT------- 139 (612)
Q Consensus 87 d~~~~~----------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~--------~~i~i~~~~-~~~~------- 139 (612)
.+.... .+...+. .....-..|+|.|||.+.++.++.... ..-.|+.++ .++.
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~ 192 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP 192 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence 665421 1111121 111234679999999888887643210 011344444 2220
Q ss_pred -eeee-ccCCceEEEEEEcCCCCEEEEE-eecCCeEEEEeCCCCee------------------eecccccccceEEEEE
Q 007229 140 -VGDF-DGHSRRVLSCEFKPTRPFRIAT-CGEDFLVNFYEGPPFKF------------------KLSHREHSNFVNCIRF 198 (612)
Q Consensus 140 -~~~~-~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~------------------~~~~~~~~~~v~~~~~ 198 (612)
...+ .+|. ....++|+|++. +.++ -+.|+.=.+--+..+.. +..+..+......|+|
T Consensus 193 ~~~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 193 GSPVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp TCCEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCeEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 1111 2333 456789999887 3333 23333222222222211 1111111134567777
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCee---eeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKI---GEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
. +|..+...-..+.|....++.+... ..+ ..+....+..++..|||.++++..
T Consensus 271 ~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~--l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 271 A-EGSVWMAGLRGERLWRIPLKGTAAAADPQAF--LEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp E-TTEEEEEESTTCSEEEEEEETTEESSCCEEE--STTTSSCEEEEEEEETTEEEEEEC
T ss_pred E-cCceeeccccCCEEEEEEecCCceecceEEe--ecCCCCCccEEEECCCCcEEEEEc
Confidence 6 4555555555566766666554321 112 123456799999999998666654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0069 Score=55.00 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=158.2
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
-+.-.+|..+.||.-.+..+.|+|+++.+.+....-. ..|.-=.|-.+. .|+..+ +..|.-|++.......+.+..|
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 3566789999999999999999999998887766533 455555665444 455543 4589999998755566666665
Q ss_pred C----CCeEEEEECCCCCEEEEEeCC--CCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCC--CEEEEEeecC---
Q 007229 102 S----GRIDDLQWSPDGLRIVACGDG--KGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTR--PFRIATCGED--- 169 (612)
Q Consensus 102 ~----~~i~~~~~s~~~~~l~~~~~~--~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d--- 169 (612)
. ..|..-.-+++.++++..|-. .+.....+-++. ..+.-+.+.||......+.+..+. ..+++.+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 4 368888889999999876531 112123344444 233445677887766555554322 1234444332
Q ss_pred CeEEEEeCCCC---eeee-----c--cc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc
Q 007229 170 FLVNFYEGPPF---KFKL-----S--HR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 170 ~~i~~wd~~~~---~~~~-----~--~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 237 (612)
+.+++-++... .... . +. .-.+-..+|..++.-..++..+.-|.+.+||++++.++..-. -...+
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr---Is~~~ 302 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGET 302 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSC
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec---ccCCc
Confidence 68888887432 1111 0 11 123446678888888889999999999999999999998874 44566
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|..-+...+..-++.....|.|.--.+
T Consensus 303 iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred eEEecccCCCCcEEEEccCceEEEEEE
Confidence 766666666566777778888887777
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0071 Score=54.61 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=116.7
Q ss_pred eccCCCceEEEEECCCCCEEEEee------------CcCeEEEeecCCC--ceeeeeeee-----cCCCeEEEEECC--C
Q 007229 55 YGEHGYPVTVARYSPNGEWIASAD------------VSGSVRIWGTHNG--FVLKNEFKV-----LSGRIDDLQWSP--D 113 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~------------~d~~i~iwd~~~~--~~~~~~~~~-----~~~~i~~~~~s~--~ 113 (612)
+.+-......+++.|+|..+++++ .+|.|.++|..+. +.....+.+ .......+.+.+ +
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 444333455677889886655552 6899999999843 322212222 223566777755 4
Q ss_pred CC-EEEEEeCCCCeeeEEEEEecCCc----eeeeeccC-CceEEEEEEcCCCCEEEEEee-----------------cCC
Q 007229 114 GL-RIVACGDGKGKSFVRAFMWDSGT----TVGDFDGH-SRRVLSCEFKPTRPFRIATCG-----------------EDF 170 (612)
Q Consensus 114 ~~-~l~~~~~~~~~~~i~i~~~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~d~ 170 (612)
++ +|.++........+.++.++.+. .+..+.+. -.....+++.++|.+ .++.. ..|
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCcc
Confidence 54 56666555434478888888532 22333332 246789999999973 55543 124
Q ss_pred eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCC
Q 007229 171 LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGK 248 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~ 248 (612)
.|.-+|.. +.. .+...-...+.++|+||++.|+.+.. .+.|..|++.....+...... ...+..-.+++.+ +|+
T Consensus 204 ~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 204 FVTYYSPN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD 279 (355)
T ss_dssp EEEEECTT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC
T ss_pred EEEEEECC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc
Confidence 55555553 222 22233345789999999998877654 688999998642222211111 2245677889998 588
Q ss_pred EEEEEeCC
Q 007229 249 KVLTVSAD 256 (612)
Q Consensus 249 ~l~~~~~d 256 (612)
+.+++..+
T Consensus 280 lwva~~~~ 287 (355)
T 3sre_A 280 LWVGCHPN 287 (355)
T ss_dssp EEEEEESC
T ss_pred EEEEecCC
Confidence 77756433
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0076 Score=54.73 Aligned_cols=270 Identities=11% Similarity=0.076 Sum_probs=164.7
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
..++.|.|+.++..+..... .. -+.-.+|..+.++.-. ...+.++|+ ++...++.+.... .+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi--~A----dsAIMnP~~~iiALra-g~~lQiFnl----e~K~klks~~~~e------~Vv 109 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI--SA----DSAIMNPASKVIALKA-GKTLQIFNI----EMKSKMKAHTMTD------DVT 109 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC--CC----SEEEECSSSSCEEEEE-TTEEEEEET----TTTEEEEEEECSS------CCC
T ss_pred CCeEEEEECCCCCcceeccc--cc----ceeeeCCCCcEEEEec-CCeEEEEch----HHhhhhcceecCC------Cce
Confidence 34788889888766533311 11 2445678777666654 679999999 9999999988764 344
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc--ceeEEEEE-ecCCcEEEEEe-------cCCcEEEEEcCCc
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--NVSTLTAL-KISQQTILSSS-------YDGAIIKWIRGVG 360 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~l~~~~-------~dg~i~~wd~~~~ 360 (612)
--.|-+...+.--.+..|+-|++.....+...+.-|.. ...-+.+. +.+.++++..+ -.|.+.+|..+.+
T Consensus 110 fWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 110 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp EEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred EEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc
Confidence 44555666666667789999998876677666665543 23333444 44566666433 2477889998887
Q ss_pred eeeeeceecccceEEEEeecc-----EEEEecC---CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEee
Q 007229 361 YSSKLEKKYDARIKCLAAVEE-----VIFTAGF---DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE 432 (612)
Q Consensus 361 ~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (612)
....+.+ |......+..+++ .+..+.. .+++++.++...... ..........+.+.|+.
T Consensus 190 ~sQ~ieG-haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~---~~~f~kk~vdv~fppe~--------- 256 (494)
T 1bpo_A 190 VSQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG---NQPFPKKAVDVFFPPEA--------- 256 (494)
T ss_dssp CEEEECC-SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTT---CCCCCCEEEECCCCTTS---------
T ss_pred ccchhee-eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccC---CCCccceeeeeeCCccc---------
Confidence 7666555 5555555544321 2222222 268888888544211 01111122222333321
Q ss_pred ccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEE
Q 007229 433 SGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512 (612)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (612)
...-..++.+|+....+..-+.-|.+++||+.++.......+ ...+|-.-+......=++..
T Consensus 257 ----------------~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI--s~~~iF~t~~~~~~~Gi~~V 318 (494)
T 1bpo_A 257 ----------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGV 318 (494)
T ss_dssp ----------------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTTTEEEEE
T ss_pred ----------------ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc--cCCceEEecccCCCCcEEEE
Confidence 123456788999999999999999999999999987433333 33455444444443444444
Q ss_pred cCCCeEEEEecCCcce
Q 007229 513 DGNREAIVWDRVSKEV 528 (612)
Q Consensus 513 ~~d~~i~iwd~~~~~~ 528 (612)
...|.|.--.+.....
T Consensus 319 nr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 319 NRKGQVLSVCVEEENI 334 (494)
T ss_dssp ETTCEEEEEEECTTTH
T ss_pred ccCceEEEEEEccccc
Confidence 5677776666655544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.003 Score=56.53 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=79.8
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 530 (612)
++++++.|+.+ ..+.+||+.+++......+......-..+. .++++++.|+.+ ..+.+||+.+.+-..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56677777644 368899998877643333322222222222 267788887754 458899988765432
Q ss_pred ec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC---
Q 007229 531 NN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED--- 601 (612)
Q Consensus 531 ~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d--- 601 (612)
.. +......-..+. .++++++.|+.+ ..+.+||..+.....+..+....... ++...+++.++.|+.+
T Consensus 190 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~ 266 (301)
T 2vpj_A 190 VTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GATVLRGRLYAIAGYDGNS 266 (301)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCBCSSS
T ss_pred CCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEEEECCEEEEEcCcCCCc
Confidence 11 111111112222 267788888764 46899999873322222222111111 2222277777888765
Q ss_pred --CeEEEEEecc
Q 007229 602 --ACIRVWRLAT 611 (612)
Q Consensus 602 --~~i~~w~~~~ 611 (612)
..+.+||+++
T Consensus 267 ~~~~v~~yd~~~ 278 (301)
T 2vpj_A 267 LLSSIECYDPII 278 (301)
T ss_dssp BEEEEEEEETTT
T ss_pred ccccEEEEcCCC
Confidence 4677888765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0074 Score=54.11 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=116.2
Q ss_pred cEEEEEec--CCcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCC----CeEEEEecCCCCCCccceeccCC
Q 007229 341 QTILSSSY--DGAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFD----NKVWRVPLCEGECGDAEHIDVGS 412 (612)
Q Consensus 341 ~~l~~~~~--dg~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~ 412 (612)
.+++.|+. ...+..||..+.+....... .......+..++..++.++.+ ..+..+|..+......
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~------- 85 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSK------- 85 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEE-------
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-------
Confidence 45555554 35788999988776554322 112223333466666666654 4566676655432100
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEeecccceeeecc-cceEEEEEEccCCCeEEEEecC------CeEEEEEccCcccc
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDL-GFTVTACAIAPDGSEAIVGGQN------GKLHIYSISGNTLT 485 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d------g~v~i~d~~~~~~~ 485 (612)
..++. ......+.+ ++++++.|+.+ ..+.+||..+.+..
T Consensus 86 --------------------------------~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 86 --------------------------------LGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp --------------------------------ECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred --------------------------------CCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 00000 001111222 56777777765 46899999887764
Q ss_pred cceeeccccCceEEEEEcCCCcEEEEEcC---------CCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee
Q 007229 486 EEMVLEKHRGAITVIQYSPDVSMFASADG---------NREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
....+......-..+. -++++++.|+. -..+.+||+.+.+-...........-.++.. -++++++.|+
T Consensus 132 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG 208 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGG 208 (306)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeC
Confidence 3333322222222222 36677777764 3458899998875431111111111111222 2677888877
Q ss_pred cC-----cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC-----CeEEEEEecc
Q 007229 557 ID-----TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED-----ACIRVWRLAT 611 (612)
Q Consensus 557 ~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d-----~~i~~w~~~~ 611 (612)
.+ ..+.+||..+.....+..+....... .+...++..++.|+.+ ..+.+||+++
T Consensus 209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV-KCAAVGSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp EETTEEBCCEEEEETTTTEEEECCCCSCCBSCC-EEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CCCCCCCceEEEeeCCCCcEEECCCCCCCccce-eEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 54 35889998873322232222111111 2222277778888744 5688888765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0059 Score=54.66 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=79.5
Q ss_pred CCCeEEEEecCC-----eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-------CeEEEEecCCcce
Q 007229 461 DGSEAIVGGQNG-----KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-------REAIVWDRVSKEV 528 (612)
Q Consensus 461 ~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------~~i~iwd~~~~~~ 528 (612)
++++++.|+.++ .+.+||+.+.+......+.........+. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 566777777553 58889988877643333332222222222 266777777643 3588999887654
Q ss_pred eee-cccccccceeEEEecCCCcEEEEeecCc-----EEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCC
Q 007229 529 KLN-NMLFHTARINCLAWSPSSTMVATGSIDT-----CVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDA 602 (612)
Q Consensus 529 ~~~-~~~~~~~~i~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~ 602 (612)
... .+......-..+.+ ++++++.|+.++ .+.+||..+.....+..+...... ..++..++..++.|+.++
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCAVNGLLYVVGGDDG 262 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCS
T ss_pred EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEEEECCEEEEECCcCC
Confidence 211 11111111122222 678888887653 688999987332222222111111 122223777788887653
Q ss_pred -----eEEEEEeccC
Q 007229 603 -----CIRVWRLATE 612 (612)
Q Consensus 603 -----~i~~w~~~~~ 612 (612)
.+.+||++++
T Consensus 263 ~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 263 SCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTT
T ss_pred CcccccEEEEcCCCC
Confidence 4888887653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.012 Score=52.83 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 530 (612)
++++++.|+.+ ..+.+||+.+.+......+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 56667776643 3688999988776433333322222223333 67777777754 458899988765431
Q ss_pred ec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC---
Q 007229 531 NN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED--- 601 (612)
Q Consensus 531 ~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d--- 601 (612)
.. +......-.++.+ ++++++.|+.+ ..+.+||+.+.....+..+...... .++...+++.++.||.+
T Consensus 199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~ 275 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGITVHQGRIYVLGGYDGHT 275 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSC
T ss_pred CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEEEECCEEEEEcCcCCCc
Confidence 11 1111111122222 67788888764 4589999987332222222211111 12222377778887743
Q ss_pred --CeEEEEEecc
Q 007229 602 --ACIRVWRLAT 611 (612)
Q Consensus 602 --~~i~~w~~~~ 611 (612)
..+.+||+++
T Consensus 276 ~~~~v~~yd~~~ 287 (308)
T 1zgk_A 276 FLDSVECYDPDT 287 (308)
T ss_dssp BCCEEEEEETTT
T ss_pred ccceEEEEcCCC
Confidence 4577888765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.024 Score=50.64 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=60.8
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 530 (612)
++++++.|+.+ ..+.+||+.+.+......+.........+. -++++++.|+.+ ..+.+||+.+.+-..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 66777777654 468999998887643333322222222222 267788888764 468999998776432
Q ss_pred ec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccC
Q 007229 531 NN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGK 568 (612)
Q Consensus 531 ~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~ 568 (612)
.. +........++. -++++++.|+.+ ..+.+||.++
T Consensus 237 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 237 VTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred CCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 11 111111112222 267788888765 4688889887
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.03 Score=50.12 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=100.5
Q ss_pred CcEEEEEecC----CcEEEEEcCCceeeeecee--cccceEEEEeeccEEEEecCC------CeEEEEecCCCCCCccce
Q 007229 340 QQTILSSSYD----GAIIKWIRGVGYSSKLEKK--YDARIKCLAAVEEVIFTAGFD------NKVWRVPLCEGECGDAEH 407 (612)
Q Consensus 340 ~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~------~~i~~~~~~~~~~~~~~~ 407 (612)
+.+++.|+.+ ..+.+||..+......... ..........++..++.++.+ ..+.+||..+..-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-- 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-- 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE--
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC--
Confidence 6677777755 6788999988765544321 112222333466666777655 3566777665432100
Q ss_pred eccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec---------CCeEEEEE
Q 007229 408 IDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ---------NGKLHIYS 478 (612)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------dg~v~i~d 478 (612)
..++....-.+++. -++++++.|+. -..+.+||
T Consensus 134 -------------------------------------~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd 175 (306)
T 3ii7_A 134 -------------------------------------PSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYD 175 (306)
T ss_dssp -------------------------------------CCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred -------------------------------------CCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeC
Confidence 00000000011111 25566666654 34588999
Q ss_pred ccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceeee-cccccccceeEEEecCCCcEE
Q 007229 479 ISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKLN-NMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l 552 (612)
+.+.+......+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-... .+........++.+ +++++
T Consensus 176 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~ 251 (306)
T 3ii7_A 176 PATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVY 251 (306)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEE
T ss_pred CCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEE
Confidence 988876433333222222222222 67777777653 3588999887653211 11111111222333 67788
Q ss_pred EEeecC-----cEEEEEEccCCCccee
Q 007229 553 ATGSID-----TCVIIYEIGKPASSRI 574 (612)
Q Consensus 553 ~s~~~d-----~~i~iwd~~~~~~~~~ 574 (612)
+.|+.+ ..+.+||..+.....+
T Consensus 252 v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 252 VLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp EEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred EEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 888754 5689999987443333
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.031 Score=50.10 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCCeEEEEecC-----CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----CeEEEEecCCcceee
Q 007229 461 DGSEAIVGGQN-----GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN-----REAIVWDRVSKEVKL 530 (612)
Q Consensus 461 ~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 530 (612)
++++++.|+.+ ..+.+||+.+.+......+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 56677777654 4689999988776433333322222233333 67788888764 468999998875432
Q ss_pred ec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCC
Q 007229 531 NN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKP 569 (612)
Q Consensus 531 ~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~ 569 (612)
.. +.........+. -++++++.|+.+ ..+.+||..+.
T Consensus 246 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 246 VAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 11 111111111222 267788888754 46888888873
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.063 Score=50.85 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=64.9
Q ss_pred ceeEEEEccCCCEEEEecC-CEEEEEeCCCCceeeE--ecc------CCCceEEEEECCC---CCEEEEe-eC-------
Q 007229 20 RGILISGNPKTDTILYCNG-RSVLIRYLDKPLHVEF--YGE------HGYPVTVARYSPN---GEWIASA-DV------- 79 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~-~~i~i~~~~~~~~~~~--~~~------h~~~v~~~~~s~d---~~~las~-~~------- 79 (612)
...+|+|.|||+++++-.. +.|++++..+++.... +.. .......|+|+|| +.+|..+ +.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 5679999999998887775 5798888765554322 221 2456779999995 4444433 22
Q ss_pred -----cCeEEEeecCCCc-------eeeeeee-ecCCCeEEEEECCCCCEEEEEeCC
Q 007229 80 -----SGSVRIWGTHNGF-------VLKNEFK-VLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 80 -----d~~i~iwd~~~~~-------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
...|.-+++.... .+...+. ........|+|.|||++.++.++.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 2356666654321 1111111 112357899999999988887753
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.013 Score=53.22 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=92.3
Q ss_pred EccCCCeEEEEecCCeEEEEEccCcccccceeeccc----cCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceee---
Q 007229 458 IAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH----RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKL--- 530 (612)
Q Consensus 458 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~--- 530 (612)
...+|..++++- ++.||.-++..... .+.+... -..|..+..+|+|++||..+. ..|.|-.+..+....
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~--Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSL--YHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSS--CEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCc--ceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc
Confidence 344555555543 46788888774432 2333322 235888999999999999865 589999887332110
Q ss_pred --------ecccc------cccceeEEEecCC---CcEEEEeecCcEEEEEEccCCCcceeeeec---------ccccCe
Q 007229 531 --------NNMLF------HTARINCLAWSPS---STMVATGSIDTCVIIYEIGKPASSRITIKN---------AHLGGV 584 (612)
Q Consensus 531 --------~~~~~------~~~~i~~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~h~~~v 584 (612)
..+.- ...+|..+.|+|- +..|++-..|+.|++||+.....++. .++ .+...|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 01110 2467999999994 45789999999999999986331222 332 122578
Q ss_pred eeEEEe-cCceEEE--ccCCCeEE
Q 007229 585 YGVAFM-DDFNVVS--SGEDACIR 605 (612)
Q Consensus 585 ~~~~~~-~~~~l~s--~~~d~~i~ 605 (612)
.+++|. ++-.|.. ..++|.|+
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEE
Confidence 899999 5554555 55778775
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.052 Score=47.85 Aligned_cols=211 Identities=9% Similarity=0.063 Sum_probs=120.3
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-cccc----c--ccceEEEEE---CCCCCeEEEEEc---
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-SHRE----H--SNFVNCIRF---SPDGSKLISVSS--- 210 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~----~--~~~v~~~~~---s~~~~~l~~~~~--- 210 (612)
+...-...+++|++....++++.-..++|..||...+.... .+.+ . ...+..|.| .|+++++++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33444556788988766445555578999999987554322 2322 1 124689999 688777665432
Q ss_pred ----------CCcEEEEecC---CCCeeeeeeccC---C-------ccccEEEEEEecCCCEEEEEeCC-CcEEEEEeec
Q 007229 211 ----------DRKGLIYDGK---SGEKIGEFSSED---G-------HHGSIYAVSWSPDGKKVLTVSAD-KSAKVWEILE 266 (612)
Q Consensus 211 ----------dg~i~vwd~~---~~~~~~~~~~~~---~-------~~~~v~~i~~~~~~~~l~~~~~d-g~i~iw~~~~ 266 (612)
+..+..+|+. +++.+....... + .......++..++|+..++.+.. +.|...+.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p-- 166 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA-- 166 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT--
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC--
Confidence 5779999999 787765552110 0 11358899999999988888877 76555553
Q ss_pred CCCCCeeEeeeeccCcc-ccceeeeeeecc--CCEEEEEEcCCEEEEEEcCCCCCCceeec--Cc---ccceeEEEEEec
Q 007229 267 DGSGGRVIKTFASSTSN-AVEDMLVGCLWQ--NDHLITVSLGGIISIFSASNLDKAPLSFS--GH---VKNVSTLTALKI 338 (612)
Q Consensus 267 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~---~~~v~~~~~~~~ 338 (612)
.++.+..+...... .......++.+. +..|++....|.+..+|+..+........ +. ......+.....
T Consensus 167 ---dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 167 ---DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp ---TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred ---CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 33333333222111 111122344444 67788887799999999874322111121 21 122344311122
Q ss_pred CCcE-EEEEecCCcEEEEEcCC
Q 007229 339 SQQT-ILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 339 ~~~~-l~~~~~dg~i~~wd~~~ 359 (612)
+++. +++...++.+.+.+.+.
T Consensus 244 ~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEEEETTEEEEEECSST
T ss_pred CCEEEEEEcCCCCEEEEECCCC
Confidence 3566 44455555555555444
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.011 Score=52.94 Aligned_cols=224 Identities=10% Similarity=0.014 Sum_probs=111.0
Q ss_pred CCCEEEEec-C----CEEEEEeCCCCceeeE--eccCCCceEEEEECCCCCEEEEeeCc-----CeEEEeecCCCceeee
Q 007229 29 KTDTILYCN-G----RSVLIRYLDKPLHVEF--YGEHGYPVTVARYSPNGEWIASADVS-----GSVRIWGTHNGFVLKN 96 (612)
Q Consensus 29 d~~~l~~~~-~----~~i~i~~~~~~~~~~~--~~~h~~~v~~~~~s~d~~~las~~~d-----~~i~iwd~~~~~~~~~ 96 (612)
++..+++|+ + +.+..||+.+.+-... +......-.++. -++++++.|+.+ ..+.+||..+.+-...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 445556655 2 4788899887653332 111111111222 277788888754 3588899887652111
Q ss_pred -eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc----eeeeeccCCceEEEEEEcCCCCEEEEEeecC--
Q 007229 97 -EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT----TVGDFDGHSRRVLSCEFKPTRPFRIATCGED-- 169 (612)
Q Consensus 97 -~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-- 169 (612)
.+.........+. -+++.++.+|.+.....-.++.++... .+..++........+.+ ++. +++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~ 167 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGL-LYAVGGYDVA 167 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEETT
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCE-EEEEeCCCCC
Confidence 1111111112222 267777777765543333455555222 22222222111122222 343 67777653
Q ss_pred -----CeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCCCeeeeeeccCCcccc
Q 007229 170 -----FLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 170 -----~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~ 237 (612)
..+.+||..+.+.... +.........+.+ +++.++.|+.+ ..+.+||+++.+....-... .....
T Consensus 168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~ 244 (302)
T 2xn4_A 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRN 244 (302)
T ss_dssp TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBS
T ss_pred CCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-Ccccc
Confidence 3588999887654432 2211111222222 56677777654 46889998876544332111 11111
Q ss_pred EEEEEEecCCCEEEEEeCCC-----cEEEEEe
Q 007229 238 IYAVSWSPDGKKVLTVSADK-----SAKVWEI 264 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg-----~i~iw~~ 264 (612)
. +++. -+++.++.|+.++ .+.+||+
T Consensus 245 ~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 245 A-GVCA-VNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp C-EEEE-ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred C-eEEE-ECCEEEEECCcCCCcccccEEEEcC
Confidence 1 1222 2677777777553 4788887
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0066 Score=49.48 Aligned_cols=144 Identities=9% Similarity=-0.027 Sum_probs=80.6
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCccccc----ceeec--cccCceEEEEEcCCCcEEEEEcCCCeEEEEecCC
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTE----EMVLE--KHRGAITVIQYSPDVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~----~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 525 (612)
.++.++|+|+|.+.++ .+|.++-.+..+..... ...+- +-+. ..++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 4678999999987777 77877776664422100 01110 1111 478999999998888 569998887643
Q ss_pred cceeeec-----c-cccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc----eeeeec-ccccCeeeEEEecCce
Q 007229 526 KEVKLNN-----M-LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS----RITIKN-AHLGGVYGVAFMDDFN 594 (612)
Q Consensus 526 ~~~~~~~-----~-~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~-~h~~~v~~~~~~~~~~ 594 (612)
.....-. + ..-=..+..|.|.|+|.+-+.. |+.++-+........ ....+. .....-+.+.|.++..
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 2221000 0 0011467999999999877776 777544333321100 011111 2222344466775555
Q ss_pred EEEccCCCe
Q 007229 595 VVSSGEDAC 603 (612)
Q Consensus 595 l~s~~~d~~ 603 (612)
|..+. ++.
T Consensus 195 l~~v~-~g~ 202 (236)
T 1tl2_A 195 LFGVQ-GGK 202 (236)
T ss_dssp EEEEE-TTE
T ss_pred EEEEe-CCe
Confidence 55555 663
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0058 Score=55.51 Aligned_cols=102 Identities=13% Similarity=0.194 Sum_probs=72.3
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCc------------eeeEecc------CCCceEEEEECCC---CCEEEEee
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPL------------HVEFYGE------HGYPVTVARYSPN---GEWIASAD 78 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~------------~~~~~~~------h~~~v~~~~~s~d---~~~las~~ 78 (612)
.+..+..||+|++||..+...|.|-.+..+. ..+.+.- ...+|..+.|+|- +..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 5678999999999999999999999988332 1112211 3577999999994 56888888
Q ss_pred CcCeEEEeecCCCceeeeeee---------ecCCCeEEEEECCCCCEEEEEe
Q 007229 79 VSGSVRIWGTHNGFVLKNEFK---------VLSGRIDDLQWSPDGLRIVACG 121 (612)
Q Consensus 79 ~d~~i~iwd~~~~~~~~~~~~---------~~~~~i~~~~~s~~~~~l~~~~ 121 (612)
.|+.|++||+.........+. .....|.+++|.+++-.|....
T Consensus 147 sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 999999999986332111221 1124688889988776555544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.014 Score=47.56 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=65.2
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCc--------eEEEEECCCCCEEEEeeCcCeEEEeecCCC
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYP--------VTVARYSPNGEWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~--------v~~~~~s~d~~~las~~~d~~i~iwd~~~~ 91 (612)
.+..++|+|+|.+.++ .++.++-.+..+.....-+. -... -.++.|.|+|.+.++ .||.|.-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 6679999999998888 77887777765533222111 1233 379999999998888 4699988876442
Q ss_pred ce---eeeeeeecC---CCeEEEEECCCCCEEEEE
Q 007229 92 FV---LKNEFKVLS---GRIDDLQWSPDGLRIVAC 120 (612)
Q Consensus 92 ~~---~~~~~~~~~---~~i~~~~~s~~~~~l~~~ 120 (612)
.. +........ ..+..+.|.|+|...++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 21 111011111 478999999999888777
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.067 Score=48.03 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCCeEEEEecC--------CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC-C-----CeEEEEecCCc
Q 007229 461 DGSEAIVGGQN--------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG-N-----REAIVWDRVSK 526 (612)
Q Consensus 461 ~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-----~~i~iwd~~~~ 526 (612)
++++++.|+.+ ..+.+||..+++......++.....-..+ ..++++++.|+. + ..+.+||..+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 66777777743 36999999887764333333222222222 246677778776 2 46889998876
Q ss_pred ceeeec-ccccccceeEEEecCCCcEEEEeecCc-----EEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccC
Q 007229 527 EVKLNN-MLFHTARINCLAWSPSSTMVATGSIDT-----CVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGE 600 (612)
Q Consensus 527 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~ 600 (612)
+-.... +......-.++. -++++++.|+.++ .+.+||..+.....+..+....... ++...+++.++.||.
T Consensus 176 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 176 EWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL-SLVSLVGTLYAIGGF 252 (315)
T ss_dssp EEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEEEEE
T ss_pred eEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce-eEEEECCEEEEECCc
Confidence 532111 111111111222 2678888887654 5888998873322222221111111 222236777777775
Q ss_pred CC--------------eEEEEEecc
Q 007229 601 DA--------------CIRVWRLAT 611 (612)
Q Consensus 601 d~--------------~i~~w~~~~ 611 (612)
++ .+.+||+++
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 253 ATLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTT
T ss_pred cccCcCCccccccccCcEEEecCCC
Confidence 42 366777765
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.11 Score=47.31 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=58.1
Q ss_pred CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce-eeeeee---ecCCCeEEEEECCC---CCEEEEEeCCC-C--eee
Q 007229 59 GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-LKNEFK---VLSGRIDDLQWSPD---GLRIVACGDGK-G--KSF 128 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~-~~~~~~---~~~~~i~~~~~s~~---~~~l~~~~~~~-~--~~~ 128 (612)
-.....++|.|||+++++ ..+|.|.+++ +++. ....+. ........++|+|+ +..|.++.... . ...
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 335679999999996665 4569999998 3431 111111 12357899999998 55555443321 0 012
Q ss_pred EEEEEecCC-----cee-eeec---cCCceEEEEEEcCCCCEEEEEe
Q 007229 129 VRAFMWDSG-----TTV-GDFD---GHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 129 i~i~~~~~~-----~~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
|..+..+.+ +.+ ..+. +.......++|.|+|. +.++-
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 333443332 111 2233 1112346899999997 45553
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.1 Score=46.13 Aligned_cols=217 Identities=6% Similarity=-0.016 Sum_probs=111.9
Q ss_pred ECCCCCEEEEee--CcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCC-----------eeeEEEEE
Q 007229 67 YSPNGEWIASAD--VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKG-----------KSFVRAFM 133 (612)
Q Consensus 67 ~s~d~~~las~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~-----------~~~i~i~~ 133 (612)
|+++|.+|.... .++.|...+..... .. .+... .+--++++|.+|..+..... ...|....
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~-~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IH-KLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CE-EEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CE-EccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345677777654 34556666655443 22 23222 13456789999998876531 11233333
Q ss_pred ecCCceeeeeccCCceEEEEEEcCCCCEEEEEe---ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc
Q 007229 134 WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC---GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
.+.++ ...+.... ...|+++++++..+- .....|..-++.... ...+..+.. .+++|+++.|+-.+.
T Consensus 95 ~dg~~-~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 95 RNGHG-STVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNP 164 (302)
T ss_dssp TTSCC-CEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECT
T ss_pred CCCCc-ceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeC
Confidence 33332 22222221 236778888644444 234556666665433 233333322 456788988887665
Q ss_pred -CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceee
Q 007229 211 -DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 211 -dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (612)
...|.+-++..+.....+ .+ ... ..+.|++.+|+-....+.-+|+.+..++...+.+. .. ..
T Consensus 165 g~~~Iy~~~l~g~~~~~l~---~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt---~~-------~~ 227 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFY---DC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT---EA-------NI 227 (302)
T ss_dssp TTCCEEEEETTTTEEEEEE---CS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS---CS-------CE
T ss_pred CCceEEEEECCCCCEEEEe---CC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe---CC-------Cc
Confidence 567888887665543333 11 122 24668898888776544345555543333322221 11 11
Q ss_pred eeeeccCCEEEEEEc--CCEEEEEEcCCC
Q 007229 290 VGCLWQNDHLITVSL--GGIISIFSASNL 316 (612)
Q Consensus 290 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~ 316 (612)
..+.+.++.++.... .+.|...++...
T Consensus 228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 228 EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 224445666665533 345555555443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.085 Score=47.43 Aligned_cols=146 Identities=11% Similarity=0.083 Sum_probs=77.5
Q ss_pred CCCeEEEEecC-------CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcC------CCeEEEEecCCcc
Q 007229 461 DGSEAIVGGQN-------GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADG------NREAIVWDRVSKE 527 (612)
Q Consensus 461 ~~~~l~~~~~d-------g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------d~~i~iwd~~~~~ 527 (612)
++++++.|+.+ ..+.+||..+.+......++.....-..+. .++++++.|+. -..+.+||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 56677777754 258889998877643332222111112222 46777777764 2358899998875
Q ss_pred eeeec-ccccccceeEEEecCCCcEEEEeecC-----cEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCC
Q 007229 528 VKLNN-MLFHTARINCLAWSPSSTMVATGSID-----TCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGED 601 (612)
Q Consensus 528 ~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d 601 (612)
-.... .......-.++. -++++++.|+.+ ..+.+||..+.....+..+...... .++...+++.++.||.+
T Consensus 187 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~ 263 (318)
T 2woz_A 187 WKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLVSLAGSLYAIGGFA 263 (318)
T ss_dssp EEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEEEETTEEEEECCBC
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEEEECCEEEEECCee
Confidence 32111 111111112222 267777777643 3577899887432333222211111 12222367777777754
Q ss_pred --------------CeEEEEEecc
Q 007229 602 --------------ACIRVWRLAT 611 (612)
Q Consensus 602 --------------~~i~~w~~~~ 611 (612)
..+.+||+++
T Consensus 264 ~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 264 MIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CBC----CCBCCBCCCEEEEETTT
T ss_pred ccCCCCceeccceeeeEEEEeCCC
Confidence 3577788765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.061 Score=57.13 Aligned_cols=268 Identities=12% Similarity=0.087 Sum_probs=151.3
Q ss_pred CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeee
Q 007229 211 DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLV 290 (612)
Q Consensus 211 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (612)
..+|.|.|+.++..+...+ -..-+.-.+|..+.++.- ...++.++|+ ++...++.+.... .+.
T Consensus 47 ~~~vvIidl~~~~~~~rrp------i~AdsAIMnP~~~iiALr-ag~~lQiFnl----~~k~klks~~~~e------~Vv 109 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP------ISADSAIMNPASKVIALK-AGKTLQIFNI----EMKSKMKAHTMTD------DVT 109 (1630)
T ss_pred CceEEEEECCCCCCccccc------ccchhhccCCCcceEEEe-cCCeEEEeeh----HHhhhhcccccCC------Cce
Confidence 3478888888866553221 111234457777766554 3678999999 8888888877654 455
Q ss_pred eeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcc----cceeEEEEEecCCcEEEEEe-------cCCcEEEEEcCC
Q 007229 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHV----KNVSTLTALKISQQTILSSS-------YDGAIIKWIRGV 359 (612)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~-------~dg~i~~wd~~~ 359 (612)
-..|-+...+.--.+..|.-|++.....+...+.-|. ..|..-.. +.+.++++..+ -.|.+.+|..+.
T Consensus 110 fWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~-d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 110 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT-DAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred EEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeee-CCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 5566677777777788999999977666666655553 23333332 33366665422 357889998887
Q ss_pred ceeeeeceecccceEEEEeec----cEEEEec----CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEe
Q 007229 360 GYSSKLEKKYDARIKCLAAVE----EVIFTAG----FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVST 431 (612)
Q Consensus 360 ~~~~~~~~~~~~~i~~~~~~~----~~l~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (612)
+....+.+ |......+..++ ..+++-. ..+++++.++....... .........+.+.|+.
T Consensus 189 ~~sQ~ieg-ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~---~~f~kk~~~~~~~~~~-------- 256 (1630)
T 1xi4_A 189 KVSQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEA-------- 256 (1630)
T ss_pred ccchhhhH-hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC---CCCccccccccCCccc--------
Confidence 66554433 333333322211 1122111 12588888875541110 1111112222222211
Q ss_pred eccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEE
Q 007229 432 ESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511 (612)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (612)
...-..++..|+....+..-+.-|.+++||+.++.......+. ..+|...+......=++.
T Consensus 257 -----------------~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~ 317 (1630)
T 1xi4_A 257 -----------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIG 317 (1630)
T ss_pred -----------------ccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCCCCceEE
Confidence 1123567888998889999999999999999999874333332 233333333332222333
Q ss_pred EcCCCeEEEEecCCcc
Q 007229 512 ADGNREAIVWDRVSKE 527 (612)
Q Consensus 512 ~~~d~~i~iwd~~~~~ 527 (612)
....|.|.--.+....
T Consensus 318 vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 318 VNRKGQVLSVCVEEEN 333 (1630)
T ss_pred EcCCceEEEEEEccch
Confidence 3355555555444443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.039 Score=50.73 Aligned_cols=107 Identities=5% Similarity=0.014 Sum_probs=51.0
Q ss_pred CCCeEEEEec------CCeEEEEEc--cCcccccceeeccccCceEEEEEcCCCcEEEEEcCC-----------------
Q 007229 461 DGSEAIVGGQ------NGKLHIYSI--SGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN----------------- 515 (612)
Q Consensus 461 ~~~~l~~~~~------dg~v~i~d~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------------- 515 (612)
++++++.|+. ...+..||+ .+.+......+..........+...++++++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 5566666653 235777877 555543332222211111211233467777777632
Q ss_pred -----CeEEEEecCCcceee-ecccccccceeEEEecCCCcEEEEeecCc------EEEEEEccCC
Q 007229 516 -----REAIVWDRVSKEVKL-NNMLFHTARINCLAWSPSSTMVATGSIDT------CVIIYEIGKP 569 (612)
Q Consensus 516 -----~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~~~d~------~i~iwd~~~~ 569 (612)
..+.+||+.+.+-.. ..+...... ..+...++++++.|+.++ .+.+++++++
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 257789988765321 111111111 222334788888888653 4666688773
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.17 Score=46.19 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=100.3
Q ss_pred CceeEEEEccC---CCEEEEec-C--------CEEEEEeCCCC--c---e--e-eEec-cCCCceEEEEECCCCCEEEEe
Q 007229 19 GRGILISGNPK---TDTILYCN-G--------RSVLIRYLDKP--L---H--V-EFYG-EHGYPVTVARYSPNGEWIASA 77 (612)
Q Consensus 19 ~~v~~~~~s~d---~~~l~~~~-~--------~~i~i~~~~~~--~---~--~-~~~~-~h~~~v~~~~~s~d~~~las~ 77 (612)
+....|+++|| +..|.++. . +.|..++.... . . + ..+. +..+....++|.|||.+.++.
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 46789999998 45554432 2 67888887654 1 1 1 1122 112234679999999877775
Q ss_pred eC-------------cCeEEEeecCCCce------eeeeeeecCCCeEEEEECC-CCCEEEEEeCCCCeeeEEEEEecCC
Q 007229 78 DV-------------SGSVRIWGTHNGFV------LKNEFKVLSGRIDDLQWSP-DGLRIVACGDGKGKSFVRAFMWDSG 137 (612)
Q Consensus 78 ~~-------------d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~~~ 137 (612)
+. .|.|.-.+....-. ....+..--.....++|.| +|+.+++-...... -.+.....+
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~--dei~~i~~G 230 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGH--DEVNIILKG 230 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSC--CEEEEECTT
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCC--cEEEEecCC
Confidence 42 24565555543200 0011111123456899999 56554443222111 123322322
Q ss_pred c------------------eeeeeccCCceEEEEEEc-------CCCCEEEEEeecCCeEEEEeCCCC-eee--ec-ccc
Q 007229 138 T------------------TVGDFDGHSRRVLSCEFK-------PTRPFRIATCGEDFLVNFYEGPPF-KFK--LS-HRE 188 (612)
Q Consensus 138 ~------------------~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~~~d~~i~~wd~~~~-~~~--~~-~~~ 188 (612)
. ++..+.........++|. .++. ++++....+.|...++... +.. .. +.+
T Consensus 231 ~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 309 (354)
T 3a9g_A 231 GNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVRKISTFFKN 309 (354)
T ss_dssp CBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEEEEEEECTT
T ss_pred CcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCcccceeeeccC
Confidence 1 222331123456778883 4554 5666666778888887653 221 12 222
Q ss_pred cccceEEEEECCCCCeEEEE
Q 007229 189 HSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~ 208 (612)
....+..+++.|||.+.++.
T Consensus 310 ~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 310 VFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp TSCCEEEEEECTTSCEEEEE
T ss_pred CCCCeeEEEECCCCcEEEEE
Confidence 34578899999999755544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.065 Score=56.92 Aligned_cols=235 Identities=11% Similarity=0.060 Sum_probs=143.1
Q ss_pred EEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec-
Q 007229 23 LISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL- 101 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~- 101 (612)
+.-.+|..+.||.-.+..+.|+|+++.+.+....- ..+|.-=.|-.+. .|+..+ +..|.-|++.......+.+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 45568889999998899999999998777665443 3456555665554 344443 3479999997654444455555
Q ss_pred ---CCCeEEEEECCCCCEEEEEeCCC----CeeeEEEEEecCCceeeeeccCCceEEEEEEc--CCCCEEEEEeec---C
Q 007229 102 ---SGRIDDLQWSPDGLRIVACGDGK----GKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFK--PTRPFRIATCGE---D 169 (612)
Q Consensus 102 ---~~~i~~~~~s~~~~~l~~~~~~~----~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~---d 169 (612)
...|..-.-+++.++++..|-.. ....++++..+ .+.-+.+.||......+... +....+++.+.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 45788888899999998776421 11123344333 22233456665544444332 111212332222 2
Q ss_pred CeEEEEeCCCC---eeeec-------cc--ccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc
Q 007229 170 FLVNFYEGPPF---KFKLS-------HR--EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 170 ~~i~~wd~~~~---~~~~~-------~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 237 (612)
+.+.+-++... ..... +. ...+-..+|..++.-..++..+.-|.+.++|++++.++..-. -...+
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r---is~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc---ccCCc
Confidence 67888876432 11110 11 112335567778877788888999999999999999887763 34455
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
|...+..+...-++.....|.|.--.+
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v 329 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCV 329 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEE
Confidence 555555544344555567777766666
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.067 Score=49.09 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=48.1
Q ss_pred cCCCEEEEec--CCEEEEEeCCC--Cceee--Eec-cCCCceEEEEECCCCCEEEEeeC-c---------CeEEEeecCC
Q 007229 28 PKTDTILYCN--GRSVLIRYLDK--PLHVE--FYG-EHGYPVTVARYSPNGEWIASADV-S---------GSVRIWGTHN 90 (612)
Q Consensus 28 ~d~~~l~~~~--~~~i~i~~~~~--~~~~~--~~~-~h~~~v~~~~~s~d~~~las~~~-d---------~~i~iwd~~~ 90 (612)
-+++.+++|+ ++.+.++|+.+ .+-.. .+. .....-.++. -++++++.|+. + ..+.+||..+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3777777776 57899999874 22211 111 1111112222 26778888776 2 3688999988
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCC
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
.+-...............+...+++.++.+|.+
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 752111111101111111222577777777754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.24 Score=50.01 Aligned_cols=109 Identities=14% Similarity=0.285 Sum_probs=64.1
Q ss_pred cCCCeEEEEecCC--eEEEEEccCccccccee---eccccCceEEEEEcCC-CcEEEEEcC--C-----CeEEEEecCCc
Q 007229 460 PDGSEAIVGGQNG--KLHIYSISGNTLTEEMV---LEKHRGAITVIQYSPD-VSMFASADG--N-----REAIVWDRVSK 526 (612)
Q Consensus 460 ~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~---~~~~~~~i~~~~~s~~-~~~l~~~~~--d-----~~i~iwd~~~~ 526 (612)
.++++++.|+.++ .+.+||..++....... +........++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 4788888887655 69999998887643332 2222222344555555 777788775 2 46889999887
Q ss_pred ce----eeeccc----ccccceeEEEecCCCcEEEEeecC--------cEEEEEEccCC
Q 007229 527 EV----KLNNML----FHTARINCLAWSPSSTMVATGSID--------TCVIIYEIGKP 569 (612)
Q Consensus 527 ~~----~~~~~~----~~~~~i~~~~~s~~~~~l~s~~~d--------~~i~iwd~~~~ 569 (612)
.- ...... .....- ++....++++++.|+.+ ..+.+||..+.
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred ccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 61 001111 011111 22233337888888743 45899999873
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.59 Score=44.17 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=62.6
Q ss_pred ceeEEEEccCCC--EEEEecCCEEEEEeCCCCc---eeeEec---------cCCCceEEEEECCC----CCEEEEeeC--
Q 007229 20 RGILISGNPKTD--TILYCNGRSVLIRYLDKPL---HVEFYG---------EHGYPVTVARYSPN----GEWIASADV-- 79 (612)
Q Consensus 20 ~v~~~~~s~d~~--~l~~~~~~~i~i~~~~~~~---~~~~~~---------~h~~~v~~~~~s~d----~~~las~~~-- 79 (612)
....|+|.|||. ++++-..|.|++++..... .+..+. +.......|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 567899999996 6666668999999754321 111111 12456789999996 444443221
Q ss_pred c----------CeEEEeecCCC---------ceeeeeee--ecCCCeEEEEECCCCCEEEEEeCCC
Q 007229 80 S----------GSVRIWGTHNG---------FVLKNEFK--VLSGRIDDLQWSPDGLRIVACGDGK 124 (612)
Q Consensus 80 d----------~~i~iwd~~~~---------~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~ 124 (612)
+ ..|.-|.+..+ ..+...+. .....-..|+|.|||.+.++.++..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 14555665421 11111222 1123467899999999888888754
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.17 Score=47.93 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=60.9
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc------ccCceEEEEEcCC---CcEEEEEc-C-------
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK------HRGAITVIQYSPD---VSMFASAD-G------- 514 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------~~~~i~~~~~s~~---~~~l~~~~-~------- 514 (612)
....++|.|+|+++++-...+.|++++..++.......+.. ..+....|+|+|+ +.+|..+. .
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 46799999999877765444578888865554422222221 2355779999995 44444332 2
Q ss_pred -----CCeEEEEecCCc-------ceeeeccc-ccccceeEEEecCCCcEEEEee
Q 007229 515 -----NREAIVWDRVSK-------EVKLNNML-FHTARINCLAWSPSSTMVATGS 556 (612)
Q Consensus 515 -----d~~i~iwd~~~~-------~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~ 556 (612)
...|.-|++... +.+...+. ........|+|.|||.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555655322 12222121 1122468899999998776654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.61 Score=44.22 Aligned_cols=191 Identities=12% Similarity=0.086 Sum_probs=119.1
Q ss_pred cCCCEEEEec--CCEEEEEeCCCCceeeEec-cCCCceEEEEEC--CCCCEEEEeeC-------cCeE---------EEe
Q 007229 28 PKTDTILYCN--GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYS--PNGEWIASADV-------SGSV---------RIW 86 (612)
Q Consensus 28 ~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s--~d~~~las~~~-------d~~i---------~iw 86 (612)
.||+||..-. +..|-..+++.-++-+.++ .....+..++|- |+-.|++.++. ||.. .+|
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 4899999987 5788888888877766544 456788889987 68888887763 3331 111
Q ss_pred ---ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC------------CeeeEEEEEec-------CCc------
Q 007229 87 ---GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK------------GKSFVRAFMWD-------SGT------ 138 (612)
Q Consensus 87 ---d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~------------~~~~i~i~~~~-------~~~------ 138 (612)
|..+.+ +.-+.. -.+....+...++|++.++.+.+. ...++.+++|. .|+
T Consensus 220 ~~iD~~tm~-v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 220 NAIDAETME-MAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEETTTCS-EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEcCCccE-EEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 111111 111111 123344556688899988877543 22367788876 111
Q ss_pred -eeeeeccCC---------------ceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCee-------------eeccccc
Q 007229 139 -TVGDFDGHS---------------RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKF-------------KLSHREH 189 (612)
Q Consensus 139 -~~~~~~~~~---------------~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------------~~~~~~~ 189 (612)
.+..+.+.. .....+.++|||+|+++.|-.+.++.++|...... ..... -
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~ 376 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-L 376 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-C
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-C
Confidence 122232211 12235788999999999999999999999764211 11111 2
Q ss_pred ccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 190 SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 190 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
.-.....+|.++|+-..+.--|..|.-|++..
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 23567789999994444445699999999875
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.34 Score=45.90 Aligned_cols=222 Identities=12% Similarity=-0.004 Sum_probs=126.1
Q ss_pred CCEEEEEeCCCCceeeEecc-------------------------CCCceE--EEEECC---CCCEEEEee-CcCeEEEe
Q 007229 38 GRSVLIRYLDKPLHVEFYGE-------------------------HGYPVT--VARYSP---NGEWIASAD-VSGSVRIW 86 (612)
Q Consensus 38 ~~~i~i~~~~~~~~~~~~~~-------------------------h~~~v~--~~~~s~---d~~~las~~-~d~~i~iw 86 (612)
.|.|+|+-+.+++.++.+.- ..+... .+.+.. ||+||..-. .+..|..-
T Consensus 79 sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan~RvAri 158 (638)
T 3sbq_A 79 QGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKANSRVARI 158 (638)
T ss_dssp GCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTTTEEEEE
T ss_pred CceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCCcceEEE
Confidence 58999999998887765421 011122 233332 788888876 45678888
Q ss_pred ecCCCceeeeeeeecCCCeEEEEEC--CCCCEEEEEeCCCC--------------eeeEEEE---EecCCceeeeeccCC
Q 007229 87 GTHNGFVLKNEFKVLSGRIDDLQWS--PDGLRIVACGDGKG--------------KSFVRAF---MWDSGTTVGDFDGHS 147 (612)
Q Consensus 87 d~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~~~~--------------~~~i~i~---~~~~~~~~~~~~~~~ 147 (612)
++..-++-...-......+..++|- |+..|++..++... ..+ .++ +-++.+....+.- .
T Consensus 159 ~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y-~~f~~iD~~tm~v~~Qv~v-~ 236 (638)
T 3sbq_A 159 RLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSY-TMYNAIDAETMEMAFQVIV-D 236 (638)
T ss_dssp ETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEE-EEEEEEETTTCSEEEEEEE-S
T ss_pred ECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhc-eEEEEEcCCccEEEEEEEc-C
Confidence 8887775332333456788899987 78889888876430 001 010 0011111111100 1
Q ss_pred ceEEEEEEcCCCCEEEEEeec--------------CCeEEEEe-------------------------CCC----Ceeee
Q 007229 148 RRVLSCEFKPTRPFRIATCGE--------------DFLVNFYE-------------------------GPP----FKFKL 184 (612)
Q Consensus 148 ~~v~~~~~~~~~~~~l~~~~~--------------d~~i~~wd-------------------------~~~----~~~~~ 184 (612)
.....+...+++.+.+.++.. .-.+.++| .+. +....
T Consensus 237 gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~ 316 (638)
T 3sbq_A 237 GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFT 316 (638)
T ss_dssp SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSE
T ss_pred CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccCCceE
Confidence 112223446677765555421 11344443 222 11111
Q ss_pred cccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCC------Ce-------eeeeeccCCccccEEEEEEecCCCEE
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSG------EK-------IGEFSSEDGHHGSIYAVSWSPDGKKV 250 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~------~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l 250 (612)
.+-.-......+.++|||++++.++. +.++.++|++.- +. ..+. .-.-.....+|.++|.-.
T Consensus 317 ~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~----e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 317 RYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP----ELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp EEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC----BCCSCEEEEEECSSSEEE
T ss_pred EEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec----cCCCcccEEEECCCCceE
Confidence 11111233557889999999987765 788999998742 11 1222 234567788999999655
Q ss_pred EEEeCCCcEEEEEee
Q 007229 251 LTVSADKSAKVWEIL 265 (612)
Q Consensus 251 ~~~~~dg~i~iw~~~ 265 (612)
.+.--|..|.-|++.
T Consensus 393 TtlfidSqvvkWni~ 407 (638)
T 3sbq_A 393 TTLFIDSQVVKWNME 407 (638)
T ss_dssp EEETTTTEEEEEEHH
T ss_pred eeeeecceEEEEecc
Confidence 555679999999993
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.55 Score=42.02 Aligned_cols=215 Identities=10% Similarity=-0.065 Sum_probs=102.0
Q ss_pred EEEEecCCEEEEEeCCCCceeeE-eccCCCceEEEEECCCCCEEEEeeC----cC-------eEEEeecCCCceeee-ee
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEF-YGEHGYPVTVARYSPNGEWIASADV----SG-------SVRIWGTHNGFVLKN-EF 98 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~s~d~~~las~~~----d~-------~i~iwd~~~~~~~~~-~~ 98 (612)
.|+..++..+..||..+.+-... +......-.+.+...++++++.|+. ++ .+.++|..+.+-... .+
T Consensus 17 ~i~~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 96 (318)
T 2woz_A 17 LILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL 96 (318)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB
T ss_pred hhhhccccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC
Confidence 34444455689999988764331 2111222334445567888888873 12 277788877652111 11
Q ss_pred eecCCCeEEEEECCCCCEEEEEeCC--CCeeeEEEEEecCCc----eeeeeccCCceEEEEEEcCCCCEEEEEeecC---
Q 007229 99 KVLSGRIDDLQWSPDGLRIVACGDG--KGKSFVRAFMWDSGT----TVGDFDGHSRRVLSCEFKPTRPFRIATCGED--- 169 (612)
Q Consensus 99 ~~~~~~i~~~~~s~~~~~l~~~~~~--~~~~~i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 169 (612)
...........+ +++.++.+|.+ .....-.++.++... .+..++.....- +++. .++. +++.|+.+
T Consensus 97 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~-iyv~GG~~~~~ 171 (318)
T 2woz_A 97 PSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGM-IYCLGGKTDDK 171 (318)
T ss_dssp SSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTE-EEEECCEESSS
T ss_pred CccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCE-EEEEcCCCCCC
Confidence 111111122222 66777777753 222233455555322 121222111111 1122 3444 67777642
Q ss_pred ---CeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 170 ---FLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 170 ---~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
..+.+||..+.+-... +........++.+ +++.++.|+.+ ..+.+||+++.+....-..+ ......
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~- 247 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP-QERSSI- 247 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS-SCCBSC-
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC-Ccccce-
Confidence 3588999887654332 2211111122222 56677777653 34778998877654332111 111111
Q ss_pred EEEEecCCCEEEEEeCC
Q 007229 240 AVSWSPDGKKVLTVSAD 256 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~d 256 (612)
+++. -+++.++.|+.+
T Consensus 248 ~~~~-~~~~i~v~GG~~ 263 (318)
T 2woz_A 248 SLVS-LAGSLYAIGGFA 263 (318)
T ss_dssp EEEE-ETTEEEEECCBC
T ss_pred EEEE-ECCEEEEECCee
Confidence 2222 256777776653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.57 Score=47.32 Aligned_cols=149 Identities=11% Similarity=0.125 Sum_probs=84.0
Q ss_pred CCCeEEEEecCC------eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCC--eEEEEecCCcceeeec
Q 007229 461 DGSEAIVGGQNG------KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR--EAIVWDRVSKEVKLNN 532 (612)
Q Consensus 461 ~~~~l~~~~~dg------~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~ 532 (612)
++++++.|+.++ .+.+||..+.+......+......-. ++.-.++++++.|+.++ .+.+||..+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 677777777543 58899998877643433332222222 23324788888887654 6899999887643211
Q ss_pred ----ccccccceeEEEecCC-CcEEEEeec--C-----cEEEEEEccCCC------cceeeeecccccCee-eEEEec-C
Q 007229 533 ----MLFHTARINCLAWSPS-STMVATGSI--D-----TCVIIYEIGKPA------SSRITIKNAHLGGVY-GVAFMD-D 592 (612)
Q Consensus 533 ----~~~~~~~i~~~~~s~~-~~~l~s~~~--d-----~~i~iwd~~~~~------~~~~~~~~~h~~~v~-~~~~~~-~ 592 (612)
.......-.++.+..+ +++++.|+. + ..+.+||+.+.. +..+.... ...... ++...+ +
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~ 608 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPR 608 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETT
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCC
Confidence 1111122233555555 777788875 2 468999998833 11222211 111111 222235 7
Q ss_pred ceEEEccC--------CCeEEEEEecc
Q 007229 593 FNVVSSGE--------DACIRVWRLAT 611 (612)
Q Consensus 593 ~~l~s~~~--------d~~i~~w~~~~ 611 (612)
..++.||. ...+.+||+++
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCC
Confidence 77888874 34588888775
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.64 Score=41.53 Aligned_cols=182 Identities=13% Similarity=0.026 Sum_probs=88.2
Q ss_pred EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeC-----CCCe-eeEEEEEec--CCc--eeee
Q 007229 73 WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD-----GKGK-SFVRAFMWD--SGT--TVGD 142 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----~~~~-~~i~i~~~~--~~~--~~~~ 142 (612)
+++.|+ ..+.+||..+.+-....+..........+...+++.++.+|. .... ..-.++.++ +++ .+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 478899998876322222222233344445568888888883 1111 111255555 222 1212
Q ss_pred eccCCceEEEEEEcCCCCEEEEEeecC--------CeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEc-C
Q 007229 143 FDGHSRRVLSCEFKPTRPFRIATCGED--------FLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSS-D 211 (612)
Q Consensus 143 ~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~-d 211 (612)
++.....-..+.+ ++. +++.|+.+ ..+.+||..+.+-... +......-.++. .+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~ 159 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGS 159 (315)
T ss_dssp BSSCEESCEEEEE--TTE-EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCT
T ss_pred CCcchhceeEEEE--CCE-EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCC
Confidence 2211111112222 333 67777743 4688999887654332 221111112222 35666677765 2
Q ss_pred -----CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC-----cEEEEEe
Q 007229 212 -----RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK-----SAKVWEI 264 (612)
Q Consensus 212 -----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~iw~~ 264 (612)
..+.+||+.+.+....-..+ ...... +++. -+++.++.|+.++ .+.+||+
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLF-GATV-HDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSC-EEEE-ETTEEEEEEEECSSSEEEEEEEEET
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-Cchhce-EEEE-ECCEEEEEeccCCCCccceEEEEEC
Confidence 46889998876544322111 111111 1222 2677777777654 3556665
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.1 Score=46.64 Aligned_cols=196 Identities=10% Similarity=-0.020 Sum_probs=105.4
Q ss_pred EEEEeecCCeEEEEeCCCCeeeeccccc-ccceEEEEE--CCCCCeEEEE--EcCCcEEEEecCCCCeeeeeeccCC-cc
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREH-SNFVNCIRF--SPDGSKLISV--SSDRKGLIYDGKSGEKIGEFSSEDG-HH 235 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~-~~ 235 (612)
+++.++.||.|.-.|.++|+.+.+++.. ..++....- .+.+..++.+ +.||.+..++.++|.....+..... ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 6899999999999999999999887654 122222110 0112234444 5799999999988866544422100 11
Q ss_pred ccEEE---EEE-----ecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc----ceeeeee-----eccCCE
Q 007229 236 GSIYA---VSW-----SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV----EDMLVGC-----LWQNDH 298 (612)
Q Consensus 236 ~~v~~---i~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~ 298 (612)
.++.. ... ...+..+++++.+|.+.-.|+ .+++.+..+........ ...+... ...++.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~----~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINM----LNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEET----TTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEEC----CCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 12221 000 013557888999999999999 99999988876542210 0000000 012456
Q ss_pred EEEEEcCCEEEEEEcCCCCCCce-eecCcccceeE--E--EEE-ecCCcEEEEEecCCcEEEEEcCCceeee
Q 007229 299 LITVSLGGIISIFSASNLDKAPL-SFSGHVKNVST--L--TAL-KISQQTILSSSYDGAIIKWIRGVGYSSK 364 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~v~~--~--~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 364 (612)
++.+..+..+.+.+ .... ... .+......... + .+. ..++.. +.++.||.|..+|..++....
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777666666655 2221 110 00000000000 0 000 001233 557888999988888777654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.69 E-value=0.97 Score=39.44 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=40.4
Q ss_pred cceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCC
Q 007229 328 KNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401 (612)
Q Consensus 328 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 401 (612)
..|..++.-. ...++. . ||.+..|-....-...........|..++.-....+... |+.++.|-.....
T Consensus 24 ~~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 24 SGVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDG 92 (282)
T ss_dssp SSCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTS
T ss_pred CCCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCC
Confidence 3566666553 333333 4 899999976543332222223456777777444433334 8999999866543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=1.2 Score=39.75 Aligned_cols=116 Identities=7% Similarity=0.001 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE--EcCCEEEEEEcCCCCCCceeecC
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV--SLGGIISIFSASNLDKAPLSFSG 325 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~ 325 (612)
..+++++.||.|.-+|. .+++.+-++......+...........++.++++ +.+|.+..++...+......-..
T Consensus 11 ~~V~v~t~dG~l~Ald~----~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDR----RNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEET----TTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEEC----CCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 46788889999999998 8888888876641001000000000113345544 57899988886554221110000
Q ss_pred ---cccceeE---EEEEe----cCCcEEEEEecCCcEEEEEcCCceeeeece
Q 007229 326 ---HVKNVST---LTALK----ISQQTILSSSYDGAIIKWIRGVGYSSKLEK 367 (612)
Q Consensus 326 ---~~~~v~~---~~~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 367 (612)
...++.. ....+ ..+..+++|+.+|.+...|..+++......
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 1111111 00000 026788999999999999999998876554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.37 E-value=1.6 Score=39.74 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=37.5
Q ss_pred CceEEEEECCCCC-EEEEeeCcCeEEEeecCCCce-eee----eeeecCCCeEEEEECCC---CCEEEEE
Q 007229 60 YPVTVARYSPNGE-WIASADVSGSVRIWGTHNGFV-LKN----EFKVLSGRIDDLQWSPD---GLRIVAC 120 (612)
Q Consensus 60 ~~v~~~~~s~d~~-~las~~~d~~i~iwd~~~~~~-~~~----~~~~~~~~i~~~~~s~~---~~~l~~~ 120 (612)
.....|+|.|||+ ++++ ...|.|++++...... ... ...........++|+|+ +.+|..+
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 3567999999999 5554 4679999998543210 011 11122346789999996 5555444
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=93.81 E-value=6.2 Score=39.73 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=120.4
Q ss_pred eEEE-EccCCCEEEEec--C----CEEEEEeCCCCceeeE-eccCCC--------ceEEEEECCCCCEEEEe--------
Q 007229 22 ILIS-GNPKTDTILYCN--G----RSVLIRYLDKPLHVEF-YGEHGY--------PVTVARYSPNGEWIASA-------- 77 (612)
Q Consensus 22 ~~~~-~s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~-~~~h~~--------~v~~~~~s~d~~~las~-------- 77 (612)
..++ ++||+++++++- + ..++++|+++++.+.- +. ... ....++|..+..++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 4455 899999999974 2 3899999999876531 22 110 11344776444444432
Q ss_pred --eCcCeEEEeecCCCce-eeeeeeecCCC-eEEEEECCCCCE-----EEEEeCCCCeeeEEEEEecCC---ceeeeecc
Q 007229 78 --DVSGSVRIWGTHNGFV-LKNEFKVLSGR-IDDLQWSPDGLR-----IVACGDGKGKSFVRAFMWDSG---TTVGDFDG 145 (612)
Q Consensus 78 --~~d~~i~iwd~~~~~~-~~~~~~~~~~~-i~~~~~s~~~~~-----l~~~~~~~~~~~i~i~~~~~~---~~~~~~~~ 145 (612)
+....|+.|.+-+... -...+.+.... -.....++++++ +++.+.+... -.++..+.. ..+..+..
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYN--YDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSC--EEEEEEECSSSSCEEEECCS
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCc--eeEEEEcCCCCCCcceEeec
Confidence 1235689998876532 22233333333 234556777763 4443323221 234544422 22233322
Q ss_pred CCceEEEEEEcCCCCEEEEEe----------ecCCeEEEEeCCCCe-------eeec-c-cccccceEEEEECCCCCeEE
Q 007229 146 HSRRVLSCEFKPTRPFRIATC----------GEDFLVNFYEGPPFK-------FKLS-H-REHSNFVNCIRFSPDGSKLI 206 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~----------~~d~~i~~wd~~~~~-------~~~~-~-~~~~~~v~~~~~s~~~~~l~ 206 (612)
..... +..+.++. +++.. ...+.|...++.++. .... + ......+..+.+..+ .+++
T Consensus 289 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 289 PSDAT--LQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CTTCE--EEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred CCcce--EeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 22211 22344554 34422 135678888876542 1111 2 223446778888876 4666
Q ss_pred EEEcCCc--EEEEecCCCC-eeee-eeccCCccccEEEEEEecCCCEEE-EEeC---CCcEEEEEe
Q 007229 207 SVSSDRK--GLIYDGKSGE-KIGE-FSSEDGHHGSIYAVSWSPDGKKVL-TVSA---DKSAKVWEI 264 (612)
Q Consensus 207 ~~~~dg~--i~vwd~~~~~-~~~~-~~~~~~~~~~v~~i~~~~~~~~l~-~~~~---dg~i~iw~~ 264 (612)
+...++. +.++++.+++ .... +.. ...+.+......+++..++ +.+. -+.+..+|+
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~l--p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKL--PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECC--CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCC--CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 6666764 6677776664 2222 211 2234566666667665444 3332 245666665
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.43 E-value=4 Score=36.33 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=94.2
Q ss_pred CceEEEE-EEcC--CCCEEEEEeecCCeEEEEeCCCCee-------eecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 147 SRRVLSC-EFKP--TRPFRIATCGEDFLVNFYEGPPFKF-------KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 147 ~~~v~~~-~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
...|.++ .+.+ +.+ .++..+.+|.++--.+..... ...++. .+.+..+........|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~-~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAP-YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSS-EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCC-EEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEE
Confidence 3445554 4432 455 599999999999987654322 223433 344555555555567888899999988
Q ss_pred EecC--CCCee-------eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCC---CCCeeEeeeeccCccc
Q 007229 217 YDGK--SGEKI-------GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDG---SGGRVIKTFASSTSNA 284 (612)
Q Consensus 217 wd~~--~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~ 284 (612)
+... .-... ..+. . .....|.++...+++.+++..+..|.++.-.+.+-. ..++-+..+.....
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~-L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~-- 247 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMR-F-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR-- 247 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSC-C-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT--
T ss_pred EECcccccCcCCcCCCCeeeec-C-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC--
Confidence 8766 21111 1110 1 345567777776667789999999999888873321 11122333322211
Q ss_pred cceeeeeee-ccCCEEEEEEcCCEEEEEEcCC
Q 007229 285 VEDMLVGCL-WQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 285 ~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
....+.... ..++.++..+.+|.+..++...
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 111222222 2356788888888888887543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.40 E-value=4.2 Score=36.51 Aligned_cols=149 Identities=14% Similarity=0.064 Sum_probs=80.6
Q ss_pred eccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee-e----eeeecCCCeEEEEECCC---CCEEEE-EeCCCC
Q 007229 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK-N----EFKVLSGRIDDLQWSPD---GLRIVA-CGDGKG 125 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~-~----~~~~~~~~i~~~~~s~~---~~~l~~-~~~~~~ 125 (612)
+...-.....|+|.|||+++++-...|.|++++..+++... . ...........++|+|| +.+|.. -+....
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 33334466799999999988877658999999876654211 1 11223567899999996 344443 332222
Q ss_pred eeeEEEEEecCC----------cee-eeec-cCCceEEEEEEcCCCCEEEEEeec-------------CCeEEEEeCCCC
Q 007229 126 KSFVRAFMWDSG----------TTV-GDFD-GHSRRVLSCEFKPTRPFRIATCGE-------------DFLVNFYEGPPF 180 (612)
Q Consensus 126 ~~~i~i~~~~~~----------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~~wd~~~~ 180 (612)
. .|.-+.++.+ +.+ ..+. .....-..|+|.|||. +.++.+. .|.|.-.+....
T Consensus 107 ~-~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 107 N-RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp E-EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred C-EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 2 1222222221 111 1222 1122346799999997 4555432 344444454321
Q ss_pred ---------eeeecccccccceEEEEECCCCCeEEE
Q 007229 181 ---------KFKLSHREHSNFVNCIRFSPDGSKLIS 207 (612)
Q Consensus 181 ---------~~~~~~~~~~~~v~~~~~s~~~~~l~~ 207 (612)
..+. -.+|. ....++|+|+|++.++
T Consensus 185 ip~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 185 PAPGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp BCTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEE
T ss_pred ccCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEE
Confidence 1111 12443 3567899998764443
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.99 E-value=4.5 Score=35.69 Aligned_cols=238 Identities=10% Similarity=0.098 Sum_probs=119.7
Q ss_pred CCCCEEEEeeCcCeEEEeecCCCceeee--------eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-----
Q 007229 69 PNGEWIASADVSGSVRIWGTHNGFVLKN--------EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD----- 135 (612)
Q Consensus 69 ~d~~~las~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~----- 135 (612)
|+..++++.+.+|.|+--.+.+-+.... .+. ....+..+........|+..++.+....+.++.+.
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 4556788888889888766654321110 011 22334444444445555555555532112222221
Q ss_pred -CCceee---eeccCCceEEEEEEc---CCCCEEEEEeecCCeEEEEeCCCCe-------eeecccccccceEEEEECCC
Q 007229 136 -SGTTVG---DFDGHSRRVLSCEFK---PTRPFRIATCGEDFLVNFYEGPPFK-------FKLSHREHSNFVNCIRFSPD 201 (612)
Q Consensus 136 -~~~~~~---~~~~~~~~v~~~~~~---~~~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~s~~ 201 (612)
.|.++. .+. ..+.|.++... ++++ .++..+.+|.++--.+.... ....+..+ +.+..+....+
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~ 156 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGV-KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSG 156 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCC
Confidence 122222 122 33445555332 3455 48889999999988754222 22223334 45555555555
Q ss_pred CCeEEEEEcCCcEEEEecCCCCee-------eeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCC---C
Q 007229 202 GSKLISVSSDRKGLIYDGKSGEKI-------GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG---G 271 (612)
Q Consensus 202 ~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~ 271 (612)
...++..+.+|.+..++...-... .-+. . .....|.++...+++..+++.+..|..+-.++.+-... +
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~ 234 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-L-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 234 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-e-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC
Confidence 557778888999888876532111 1111 1 33456777765555667888889999888877322111 1
Q ss_pred eeEeeeeccCccccceeeeeee--ccCCEEEEEEcCCEEEEEEcCC
Q 007229 272 RVIKTFASSTSNAVEDMLVGCL--WQNDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~ 315 (612)
+-+..+.... ....+.++. ..+..++..+.+|.+.-++...
T Consensus 235 kG~~~~~~~~---~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 235 KGVISIKVTE---RNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCEESSCCCT---TTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCEEeeEecC---CCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1122222111 111222222 1355677777777776666443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.32 E-value=6.8 Score=34.05 Aligned_cols=243 Identities=13% Similarity=0.062 Sum_probs=129.7
Q ss_pred eeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee
Q 007229 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368 (612)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 368 (612)
+..+.......++.. +|.+..|-.......-.. ......|..++... ...++. . ||.+..|-....-..-....
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~ 99 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPAE 99 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCGG
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCcc
Confidence 333444455555556 999999985554332211 11233566666653 344444 4 89999997654332222222
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeec
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKID 448 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (612)
....|..++.-....+... ++.++.|-......... ...
T Consensus 100 ~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~----------------------------------------~~~ 138 (282)
T 3qhy_B 100 ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV----------------------------------------PAE 138 (282)
T ss_dssp GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC----------------------------------------CGG
T ss_pred cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC----------------------------------------Ccc
Confidence 3457888888666666666 99999998765432200 000
Q ss_pred ccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcce
Q 007229 449 LGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEV 528 (612)
Q Consensus 449 ~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~ 528 (612)
....|..++...+.. ++ -. ||.|+.|-....... .....-...|..++...+. .++. .||.++.|-......
T Consensus 139 ~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gql--g~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gq 210 (282)
T 3qhy_B 139 AQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQT--TVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQ 210 (282)
T ss_dssp GGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTT--SCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTST
T ss_pred CCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCC--CCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCC
Confidence 112355555443332 22 23 688888866532221 1111123567777765543 3333 589999996554322
Q ss_pred eeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEE
Q 007229 529 KLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVV 596 (612)
Q Consensus 529 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 596 (612)
+- ........|..++-..+.. ++.. ||.++.|=....+ + +.. ...|.+++-.....++
T Consensus 211 lg-~p~~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~~g-q-~~v----~~~v~~iaaG~~h~~a 268 (282)
T 3qhy_B 211 TT-VPTEALSGVSAIASGEWYS-LALK--NGKVIAWGSSRTA-P-SSV----QSGVSSIEAGPNAAYA 268 (282)
T ss_dssp TC-CCGGGGSSCCEEEECSSCE-EEEE--TTEEEEESTTCCC-C-GGG----SSCEEEEEECSSCEEE
T ss_pred CC-CCcccCCCceEEEcCCCEE-EEEE--CCEEEEecCCCCc-c-ccC----CCCcEEEEECcCeEEE
Confidence 21 1111234577777654433 3333 9999999776633 2 211 3457777665333333
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=90.08 E-value=15 Score=38.55 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=33.5
Q ss_pred ceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
.+.+++..++..++++.+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888888999999999999999999999887753
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.91 E-value=10 Score=33.74 Aligned_cols=160 Identities=9% Similarity=0.021 Sum_probs=92.9
Q ss_pred ccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCcccc-----cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE
Q 007229 449 LGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTLT-----EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 449 ~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 520 (612)
....|.++..-+ +..+++..+.+|.++.-.+..-... ....+.. ...+..+........|+..+..|.+..
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIR 171 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEE
Confidence 344555554433 5789999999999999887643211 0122333 344555544455567777888899888
Q ss_pred EecC--Cccee--------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCc-----ceeee--ecccccC
Q 007229 521 WDRV--SKEVK--------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPAS-----SRITI--KNAHLGG 583 (612)
Q Consensus 521 wd~~--~~~~~--------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~--~~~h~~~ 583 (612)
+... .-... ...+. ....|.++...+++.+|+..+..|.++.-.+..-.. .-+.. +..-.+.
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~ 250 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGR 250 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCS
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCe
Confidence 8776 21111 01122 345576766666667889999999999888754100 11111 2221345
Q ss_pred eeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 584 VYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 584 v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
+..+... ++..++..+.+|.+.-++++
T Consensus 251 lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 251 LVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 6555544 55566666667766665543
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.77 E-value=12 Score=32.99 Aligned_cols=159 Identities=9% Similarity=0.025 Sum_probs=89.1
Q ss_pred ccceEEEEEEc---cCCCeEEEEecCCeEEEEEccCcccc-----cceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE
Q 007229 449 LGFTVTACAIA---PDGSEAIVGGQNGKLHIYSISGNTLT-----EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 449 ~~~~i~~~~~s---~~~~~l~~~~~dg~v~i~d~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 520 (612)
....|.++..- +++.+++..+.+|.++.-.+..-... ....+..+ +.+..+....+...++..+.+|.+..
T Consensus 93 ~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~ir 171 (307)
T 1zi0_A 93 QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVR 171 (307)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEE
Confidence 34456555432 35667899999999999887532210 11223333 45555544444556777778888888
Q ss_pred EecCCccee--------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCC---Cc--c--eeeeecccccCee
Q 007229 521 WDRVSKEVK--------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKP---AS--S--RITIKNAHLGGVY 585 (612)
Q Consensus 521 wd~~~~~~~--------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~--~--~~~~~~~h~~~v~ 585 (612)
++...-... ...+. ....|.++...+++..|++.+..|.++-.++..- .. . ....+..-.+.+.
T Consensus 172 f~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv 250 (307)
T 1zi0_A 172 FKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVV 250 (307)
T ss_dssp EEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEE
T ss_pred EEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEE
Confidence 876432111 01122 2345666655555667888899999998887430 00 1 1111222335666
Q ss_pred eEEEe-cCceEEEccCCCeEEEEEe
Q 007229 586 GVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 586 ~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
.+... ++..++..+.+|.+.-.++
T Consensus 251 ~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 251 GAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp EEEEECTTCEEEEEESSCCEEEEEG
T ss_pred EEEEeCCCceEEEEcCCCcEEEEec
Confidence 65554 5555666666666655444
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=88.51 E-value=15 Score=33.82 Aligned_cols=180 Identities=10% Similarity=-0.006 Sum_probs=87.1
Q ss_pred EEEEeeCcCeEEEeecCC-Cceeeee-eeecCCCeEEEEECC--CCCEEEEEeCCCCeeeEEEEEec-CCceeeeec---
Q 007229 73 WIASADVSGSVRIWGTHN-GFVLKNE-FKVLSGRIDDLQWSP--DGLRIVACGDGKGKSFVRAFMWD-SGTTVGDFD--- 144 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~~-~~~~~~~-~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~--- 144 (612)
.|..|...| +.+.+... ++.-... .......|.++++.| ++..++.+...... ..|+..+ .++.-..+.
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g--~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLG--PTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CC--EEEEEESSTTSCCEECSBCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCC--ccEEEeCCCCCCceECCccc
Confidence 566666666 54554432 2211111 112345799999998 55555544332000 0244443 333222211
Q ss_pred ---c--------CCceEEEEEEcCC--CCEEEEEeecCCeEEEEeC--CCCeeeecccc----------------cccce
Q 007229 145 ---G--------HSRRVLSCEFKPT--RPFRIATCGEDFLVNFYEG--PPFKFKLSHRE----------------HSNFV 193 (612)
Q Consensus 145 ---~--------~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~----------------~~~~v 193 (612)
. ....|.++++.|. .. .+..+...+.|...+- .+.+.+..+.. ....+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPG-TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTT-CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCC-EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1 1236888999873 33 3666666665655532 22233221111 12357
Q ss_pred EEEEECCC-CCeEEEEEcCCcEEEEecCCCCeeeeeecc-CC---------ccccEEEEEEecC-CCEEEEEeCCC
Q 007229 194 NCIRFSPD-GSKLISVSSDRKGLIYDGKSGEKIGEFSSE-DG---------HHGSIYAVSWSPD-GKKVLTVSADK 257 (612)
Q Consensus 194 ~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~---------~~~~v~~i~~~~~-~~~l~~~~~dg 257 (612)
.+|.+.|. ...|+.+..++.|...+ ..|+....+... .. ....+.++++.|+ ...+..+...+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 89999983 44566665555554443 334333332110 00 0135889999985 35566665544
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=88.48 E-value=13 Score=33.03 Aligned_cols=239 Identities=9% Similarity=0.071 Sum_probs=121.7
Q ss_pred CCCCEEEEeeCcCeEEEeecCCCce---eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec------CCce
Q 007229 69 PNGEWIASADVSGSVRIWGTHNGFV---LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD------SGTT 139 (612)
Q Consensus 69 ~d~~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~------~~~~ 139 (612)
|+..++++.+.+|.|+--.+..-+. ....+. ....+..+........|+..++.+....+.++.+. .|.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 5667788888888888765442110 000111 22344444444445556666655532111222211 1222
Q ss_pred eee---eccCCceEEEE-EEcC--CCCEEEEEeecCCeEEEEeCCCCe--------eeecccccccceEEEEECCCCCeE
Q 007229 140 VGD---FDGHSRRVLSC-EFKP--TRPFRIATCGEDFLVNFYEGPPFK--------FKLSHREHSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 140 ~~~---~~~~~~~v~~~-~~~~--~~~~~l~~~~~d~~i~~wd~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l 205 (612)
+.. +. ..+.|.++ ...+ ++.+ ++..+.+|.++--.+.... ....+... +.+..+........+
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~-ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGY-FLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNEL 158 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCE-EEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCce-EEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEE
Confidence 222 22 23345544 4432 2554 8888999999998764322 22223333 455555555555678
Q ss_pred EEEEcCCcEEEEecCCCCee-------eeeeccCCccccEEEEEEecCCC-EEEEEeCCCcEEEEEeecCC---CCCeeE
Q 007229 206 ISVSSDRKGLIYDGKSGEKI-------GEFSSEDGHHGSIYAVSWSPDGK-KVLTVSADKSAKVWEILEDG---SGGRVI 274 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~iw~~~~~~---~~~~~~ 274 (612)
+..+.+|.+..++...-... .-+. . .....|.++...+++. .+++.+..|..+..++.+-. ..++-+
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~-L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv 236 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMN-L-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV 236 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCC-C-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEE-e-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCE
Confidence 88899999988876532111 1111 1 2345567765555455 78888889988887774311 112222
Q ss_pred eeeeccCccccceeee-eeecc-CCEEEEEEcCCEEEEEEcCC
Q 007229 275 KTFASSTSNAVEDMLV-GCLWQ-NDHLITVSLGGIISIFSASN 315 (612)
Q Consensus 275 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~~~ 315 (612)
..+..... ....+. ..... ++.++..+.+|.+..+....
T Consensus 237 ~~~~~~~~--~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 237 VILRELKA--NPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp ECSCCCSS--SCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ECeeecCC--CCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 22221110 111222 22222 56677777777776666443
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=87.40 E-value=17 Score=33.06 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=124.1
Q ss_pred ECCCCCEEEEeeCcCeEEEeecCCCc-------eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec----
Q 007229 67 YSPNGEWIASADVSGSVRIWGTHNGF-------VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD---- 135 (612)
Q Consensus 67 ~s~d~~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~---- 135 (612)
+-|+..++++.+.+|.|+--.+..-+ .+...-......+..+........|+..+..+.. +++-.++
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~--~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKV--FWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEE--EEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeE--EEEEHHHCcCC
Confidence 34777889999999999876543211 1111111223455555555555666666665532 2222222
Q ss_pred ----CCceeee---eccCCceEEEEE-EcC--CCCEEEEEeecCCeEEEEeCCCCe-------eeecccccccceEEEEE
Q 007229 136 ----SGTTVGD---FDGHSRRVLSCE-FKP--TRPFRIATCGEDFLVNFYEGPPFK-------FKLSHREHSNFVNCIRF 198 (612)
Q Consensus 136 ----~~~~~~~---~~~~~~~v~~~~-~~~--~~~~~l~~~~~d~~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~ 198 (612)
.|.++.. +. ....|.++. +.. ++. .++.++..|.++--.+.... ....+.. .+.+..+..
T Consensus 81 ~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~-~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~ 157 (370)
T 3l6v_A 81 GSNARGRPIINWIPLE-SGERVQAVLPVREYADNR-YVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL 157 (370)
T ss_dssp CTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE
T ss_pred CcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCc-EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE
Confidence 1222222 22 234555544 322 344 48999999999988754332 2222333 344555555
Q ss_pred CCCCCeEEEEEcCCcEEEEecCCCCee-------eeeeccCCccccEEEEEEec--------------------------
Q 007229 199 SPDGSKLISVSSDRKGLIYDGKSGEKI-------GEFSSEDGHHGSIYAVSWSP-------------------------- 245 (612)
Q Consensus 199 s~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~i~~~~-------------------------- 245 (612)
..+...++..+.+|.+..++...-... .-+. . .....|.++...+
T Consensus 158 ~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~-L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~ 235 (370)
T 3l6v_A 158 TDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIR-L-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEP 235 (370)
T ss_dssp ECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTCCEEEEEEECCC------------------------
T ss_pred eCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEE-e-CCCCEEEEEEEeccccccccccccccccccccccccccc
Confidence 555567888888998888876432111 1110 0 2345566655544
Q ss_pred ---------CCCEEEEEeCCCcEEEEEeecCCCC---CeeEeeeeccCccccceeeeeee--ccCCEEEEEEcCCEEEEE
Q 007229 246 ---------DGKKVLTVSADKSAKVWEILEDGSG---GRVIKTFASSTSNAVEDMLVGCL--WQNDHLITVSLGGIISIF 311 (612)
Q Consensus 246 ---------~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~ 311 (612)
++..+++.+..|..+...+.+-... ++-+..+..... ...+.++. ..++.++..+..|.+.-.
T Consensus 236 ~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~---~g~lv~~~~v~~~d~i~liT~~G~~iR~ 312 (370)
T 3l6v_A 236 AVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTER---NGKLVRAVLLGSTDEVMLISDGGTLVRT 312 (370)
T ss_dssp -----------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTT---TCSEEEEEEECTTCEEEEEETTCCEEEE
T ss_pred cccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCC---CCcEEEEEEeCCCceEEEEcCCCeEEEe
Confidence 4457888899999888887432222 222233322211 11222221 235677777777776666
Q ss_pred EcC
Q 007229 312 SAS 314 (612)
Q Consensus 312 ~~~ 314 (612)
...
T Consensus 313 ~v~ 315 (370)
T 3l6v_A 313 RGS 315 (370)
T ss_dssp EGG
T ss_pred eHh
Confidence 543
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.23 E-value=18 Score=33.26 Aligned_cols=287 Identities=10% Similarity=0.059 Sum_probs=132.0
Q ss_pred CEEEEEeCCCcEEEEEeecCCCCC----eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCC----
Q 007229 248 KKVLTVSADKSAKVWEILEDGSGG----RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKA---- 319 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 319 (612)
+.++....||.|..|=....+.-+ ....... .........+..+.......++...+|.+..|-.......
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~-~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPT-PCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEE-ECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCE-ecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 345556677888888764332222 1111100 0000011123344445777888889999999964332110
Q ss_pred ------ceeecC-cccceeEEEEEecCCcEEEEEecCCcEEEEEcCCc-----------e-eeeeceecccceEEEEeec
Q 007229 320 ------PLSFSG-HVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVG-----------Y-SSKLEKKYDARIKCLAAVE 380 (612)
Q Consensus 320 ------~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-----------~-~~~~~~~~~~~i~~~~~~~ 380 (612)
...+.. ....+..+++. ......+.-..||.|+.|-.... . +..........|..++.-.
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~-~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~ 168 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVN-SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG 168 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEEC-TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS
T ss_pred cCCccCCEEcccccCCceeEEEEC-cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc
Confidence 011111 11123333333 12556666778999999954321 0 1111111234678888877
Q ss_pred cEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEcc
Q 007229 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460 (612)
Q Consensus 381 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 460 (612)
...+....+|.++.|-.......-.. ... ....| ..+. ......+..++...
T Consensus 169 ~hs~alt~~G~v~~wG~n~~GqLG~~-----~~~--~~~~p--------------------~~v~-~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 169 AHSACVTAAGDLYTWGKGRYGRLGHS-----DSE--DQLKP--------------------KLVE-ALQGHRVVDIACGS 220 (389)
T ss_dssp SEEEEEETTSCEEEEECCGGGTTCSS-----SCC--CEEEE--------------------EECG-GGTTSCEEEEEECC
T ss_pred CeEEEEeCCCeEEEeCCCCCCCcCCC-----CCc--ccccc--------------------eEec-ccCCCeEEEEEEcC
Confidence 77777888999999976542211000 000 00000 0000 00122455666554
Q ss_pred CCCeEEEEecCCeEEEEEccCc-cc--------ccceeecc-ccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCccee-
Q 007229 461 DGSEAIVGGQNGKLHIYSISGN-TL--------TEEMVLEK-HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVK- 529 (612)
Q Consensus 461 ~~~~l~~~~~dg~v~i~d~~~~-~~--------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~- 529 (612)
.....++-..+|.|+.|-.... ++ .....+.. ....|..++...+ ..+.-..||.|+.|=......+
T Consensus 221 g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTC
T ss_pred CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCC
Confidence 3345556678888888864321 11 00011111 1224666655433 3344457899999965321110
Q ss_pred ---------eeccc-ccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 530 ---------LNNML-FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 530 ---------~~~~~-~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
..... .....|..++-.. ...+.-..||.|+.|=...
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECCT
T ss_pred CCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCCC
Confidence 01111 1123455555533 3444456899999998765
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=87.12 E-value=16 Score=32.49 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=86.9
Q ss_pred ccceEEEEE-Ecc--CCCeEEEEecCCeEEEEEccCcccc------cceeeccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 449 LGFTVTACA-IAP--DGSEAIVGGQNGKLHIYSISGNTLT------EEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 449 ~~~~i~~~~-~s~--~~~~l~~~~~dg~v~i~d~~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
....|.++. +.+ ++.+++..+.+|.++.-.+..-... ....+... +.+..+........++..+.+|.+.
T Consensus 90 ~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~i 168 (323)
T 1wp5_A 90 RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYAL 168 (323)
T ss_dssp TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEE
T ss_pred CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 344555543 332 2567899999999999887532210 01123322 4555555544555677778889888
Q ss_pred EEecCCccee--------eecccccccceeEEEecCCCc-EEEEeecCcEEEEEEccCC---C--cceeee---eccccc
Q 007229 520 VWDRVSKEVK--------LNNMLFHTARINCLAWSPSST-MVATGSIDTCVIIYEIGKP---A--SSRITI---KNAHLG 582 (612)
Q Consensus 520 iwd~~~~~~~--------~~~~~~~~~~i~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~---~--~~~~~~---~~~h~~ 582 (612)
.++...-... ...+. ....|.++...+++. .|++.+..|..+..++..- . .+-+.. ++....
T Consensus 169 rf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~ 247 (323)
T 1wp5_A 169 WFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPH 247 (323)
T ss_dssp EEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCC
T ss_pred EEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCc
Confidence 8876432111 11122 234466665444444 6888888998888887640 0 011111 222222
Q ss_pred CeeeEEEe-cCceEEEccCCCeEEEEEec
Q 007229 583 GVYGVAFM-DDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 583 ~v~~~~~~-~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+..+... ++..++..+..|.+...+++
T Consensus 248 ~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 248 RISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred eEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 45544444 45556666667766554543
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.05 E-value=14 Score=31.88 Aligned_cols=159 Identities=9% Similarity=0.030 Sum_probs=92.2
Q ss_pred CceEEEEEEcC-CCCEEEEEeecCCeEEEEeCCCCe------eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEec
Q 007229 147 SRRVLSCEFKP-TRPFRIATCGEDFLVNFYEGPPFK------FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219 (612)
Q Consensus 147 ~~~v~~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 219 (612)
.+.|..+.... +.+ .++..+.+|.++-..+.... ....++. .+.+..+........++..+..|.+..++.
T Consensus 67 ~e~i~~v~~~~~~~~-~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGN-RLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCS-EEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCC-EEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 44555553321 345 58999999999998865542 1122332 345666666656667888899999888875
Q ss_pred CCCCe-------eeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCC---CCCeeEeeeeccCccccceee
Q 007229 220 KSGEK-------IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDG---SGGRVIKTFASSTSNAVEDML 289 (612)
Q Consensus 220 ~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 289 (612)
..-.. ..-+. . .....|.++...+++..++..+..|.++...+.+-. ..++-+..+ .. ....+
T Consensus 145 ~eip~~gR~a~Gv~~i~-L-~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~----~~~lv 217 (276)
T 3no0_A 145 REVPPSTPGARGVQGIK-L-EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GT----KDTLV 217 (276)
T ss_dssp GGSCBCCTTCCCEECCC-C-CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CS----SSCEE
T ss_pred hhCCCcCCCCCCEEEEc-c-CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cC----CCcEE
Confidence 43111 11111 1 234567777666667788889999999988874321 122223333 11 11122
Q ss_pred eeee-ccCCEEEEEEcCCEEEE--EEcC
Q 007229 290 VGCL-WQNDHLITVSLGGIISI--FSAS 314 (612)
Q Consensus 290 ~~~~-~~~~~~~~~~~~~~i~~--~~~~ 314 (612)
.... ..++.++..+.+|.+.. ++..
T Consensus 218 ~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 218 DLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 1111 23557778888888777 7644
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=85.99 E-value=3.2 Score=40.35 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=46.2
Q ss_pred ceeEEEEccCCCEEEEecC-------------CEEEEEeCCCCceeeEeccC-CCceEEEEECCCCCEEEEe
Q 007229 20 RGILISGNPKTDTILYCNG-------------RSVLIRYLDKPLHVEFYGEH-GYPVTVARYSPNGEWIASA 77 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~-------------~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~ 77 (612)
..-.|+|+|+|+++++-.+ +.+.+.+..+++..+++.++ ...++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4578999999996666542 25677788889988888776 5689999999999988765
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=85.48 E-value=4.7 Score=38.72 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=46.3
Q ss_pred CceeEEEEccCCCEEEEecC-------------CEEEEEeCCCCceeeEeccC-CCceEEEEECCCCCEEEEe
Q 007229 19 GRGILISGNPKTDTILYCNG-------------RSVLIRYLDKPLHVEFYGEH-GYPVTVARYSPNGEWIASA 77 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~~-------------~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~las~ 77 (612)
.....|+|+++|.+.+.... +.|..++..+++..+.+.+. ...++.++||||++.|..+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 46778999999987774432 27888888888888777654 4679999999999988776
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=85.34 E-value=19 Score=31.78 Aligned_cols=118 Identities=7% Similarity=-0.018 Sum_probs=72.5
Q ss_pred ccceEEEEEEcc---CCCeEEEEecCCeEEEEEccCccc-----ccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEE
Q 007229 449 LGFTVTACAIAP---DGSEAIVGGQNGKLHIYSISGNTL-----TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520 (612)
Q Consensus 449 ~~~~i~~~~~s~---~~~~l~~~~~dg~v~i~d~~~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i 520 (612)
....+.++..-+ +..+++..+.+|.++...+..-.. .....+.. .+.+..+....+...++..+.+|.+..
T Consensus 98 ~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r 176 (312)
T 1suu_A 98 DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFI 176 (312)
T ss_dssp TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 344555554433 467788899999999888753211 11223333 445555555555567888888999998
Q ss_pred EecCCccee--------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 521 WDRVSKEVK--------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 521 wd~~~~~~~--------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
+....-... ...+. ....|.++..-+++..|++.+..|..+..++..
T Consensus 177 ~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 177 FNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 877542111 11122 234556665555566788888999999998864
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.54 E-value=20 Score=37.70 Aligned_cols=35 Identities=0% Similarity=0.004 Sum_probs=30.9
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
..|.+++..++..++++-+.|+++|+|++.+++++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 35778888899999999999999999999999853
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=81.17 E-value=32 Score=31.27 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=45.8
Q ss_pred ceEEEEEEccC----CCeEEEEecCCeEEEEEccCc-----ccccceeeccccC---ceEEEEEc-CCCcEEEEEcCCCe
Q 007229 451 FTVTACAIAPD----GSEAIVGGQNGKLHIYSISGN-----TLTEEMVLEKHRG---AITVIQYS-PDVSMFASADGNRE 517 (612)
Q Consensus 451 ~~i~~~~~s~~----~~~l~~~~~dg~v~i~d~~~~-----~~~~~~~~~~~~~---~i~~~~~s-~~~~~l~~~~~d~~ 517 (612)
..+..++++|+ ++.|......+ -++|.+.+. .........+..+ .-..+++. .+|.++++--+...
T Consensus 220 ~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a 298 (381)
T 3q6k_A 220 AGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQ 298 (381)
T ss_dssp CCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred cCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence 46889999998 77777766554 244444322 1111112222232 23346675 67888888888899
Q ss_pred EEEEecCC
Q 007229 518 AIVWDRVS 525 (612)
Q Consensus 518 i~iwd~~~ 525 (612)
|..|+..+
T Consensus 299 I~~w~~~~ 306 (381)
T 3q6k_A 299 VSCWNTQK 306 (381)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 99999876
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=80.41 E-value=35 Score=31.29 Aligned_cols=212 Identities=12% Similarity=-0.020 Sum_probs=99.9
Q ss_pred EEEEecCCEEEEEeCCC-CceeeEe--ccCCCceEEEEECC--CCCEEEEeeCcC----eEEEeecCCCceeeeeee---
Q 007229 32 TILYCNGRSVLIRYLDK-PLHVEFY--GEHGYPVTVARYSP--NGEWIASADVSG----SVRIWGTHNGFVLKNEFK--- 99 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~-~~~~~~~--~~h~~~v~~~~~s~--d~~~las~~~d~----~i~iwd~~~~~~~~~~~~--- 99 (612)
.|.++...-+.+++... +..-..+ ......|.+|++.| ++.+.|.+. .| .|...+ ..++. ...+.
T Consensus 24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s~-D~G~t-W~~~~~~~ 100 (394)
T 3b7f_A 24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAAR-TGHLGPTVFRSD-DGGGN-WTEATRPP 100 (394)
T ss_dssp EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEE-C--CCEEEEEES-STTSC-CEECSBCC
T ss_pred EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEec-CCCCCccEEEeC-CCCCC-ceECCccc
Confidence 45555544466665542 3322222 12346799999999 555555543 33 333321 22221 11111
Q ss_pred ---e--------cCCCeEEEEECCC--CCEEEEEeCCCCeeeEEEEEecC-Cceeeeec-------------------cC
Q 007229 100 ---V--------LSGRIDDLQWSPD--GLRIVACGDGKGKSFVRAFMWDS-GTTVGDFD-------------------GH 146 (612)
Q Consensus 100 ---~--------~~~~i~~~~~s~~--~~~l~~~~~~~~~~~i~i~~~~~-~~~~~~~~-------------------~~ 146 (612)
. ....|.++++.|. ...|.+++..+ .|+..+. ++.-..+. ..
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~g-----gl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQ-----GLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETT-----EEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCC-----cEEEEcCCCCCeEECcCccCCccccccccccccCCCC
Confidence 0 1125778999872 44555555443 2555542 33222221 12
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeC--CCCeeeec-ccc-c--------ccceEEEEECCC-CCeEEEEEcCCc
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEG--PPFKFKLS-HRE-H--------SNFVNCIRFSPD-GSKLISVSSDRK 213 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~--~~~~~~~~-~~~-~--------~~~v~~~~~s~~-~~~l~~~~~dg~ 213 (612)
...+.+|.+.|..+..+..+..++.|...+- ++.+.... +.. + ...+.++++.|+ ...|+.+...+
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 3468899999843213555544444444432 12222211 100 0 134889999986 35666666444
Q ss_pred EEEEecCCCCeeeeeeccCCc--cccEEEEEEec-CCCEEEEE
Q 007229 214 GLIYDGKSGEKIGEFSSEDGH--HGSIYAVSWSP-DGKKVLTV 253 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~--~~~v~~i~~~~-~~~~l~~~ 253 (612)
|...+ ..++....+...... ...+..++++| +...+.++
T Consensus 255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 54444 334444444210011 13456788876 33445544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 612 | ||||
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-31 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-30 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-20 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-16 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-14 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-04 | |
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 1e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.002 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.002 | |
| d1xfda1 | 465 | b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik | 0.003 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 121 bits (304), Expect = 2e-31
Identities = 105/314 (33%), Positives = 162/314 (51%), Gaps = 10/314 (3%)
Query: 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYP 61
+E + + P T RG +++ P D I YCNG SV + E Y EH +
Sbjct: 1 SEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQ 60
Query: 62 VTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACG 121
TVA+ SP+G + AS DV G+VRIW T + + + +A
Sbjct: 61 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV 120
Query: 122 DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181
+ F F++D+GT+ G+ G +R + S +FKP+RPFRI + +D V +EGPPFK
Sbjct: 121 GEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 180
Query: 182 FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED----GHHGS 237
FK + EH+ FV+ +R++PDGS S D ++Y+G G K G F + H GS
Sbjct: 181 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 240
Query: 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297
++ ++WSPDG K+ + SADK+ K+W + + +V KT +ED +G +W
Sbjct: 241 VFGLTWSPDGTKIASASADKTIKIWNV----ATLKVEKTI--PVGTRIEDQQLGIIWTKQ 294
Query: 298 HLITVSLGGIISIF 311
L+++S G I+
Sbjct: 295 ALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 2e-07
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 2/92 (2%)
Query: 494 RGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVA 553
RG V+ +P +G V H+ + SPS A
Sbjct: 17 RGTAVVLGNTPAGDKIQYCNGTS-VYTVP-VGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74
Query: 554 TGSIDTCVIIYEIGKPASSRITIKNAHLGGVY 585
+G + V I++ + T G V
Sbjct: 75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.1 bits (115), Expect = 6e-07
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
+ HS V + +SPDG+K+ S S+D+ I++ + + + W+
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 293
Query: 246 DGKKVLTVSADKSAKVWEI 264
++++SA+
Sbjct: 294 QA--LVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.1 bits (89), Expect = 0.001
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI--GKPASSRITIKNAHLGGVYGVA 588
+ H+ + L WSP T +A+ S D + I+ + K + I + G+
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT-IPVGTRIEDQQLGII 290
Query: 589 FMDDFNVVSSGEDACIRVW 607
+ +VS + I
Sbjct: 291 WTKQA-LVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.6 bits (85), Expect = 0.004
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
T P G + I ++ + +LT+ + +H TV + SP AS
Sbjct: 19 TAVVLGNTPAG-DKIQYCNGTSVYTVPV--GSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 512 ADGNREAIVWDRVSKEVKLNNML-FHTARINCLAWSPSSTM 551
D + +WD L + + + ++W S
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 118 bits (294), Expect = 6e-30
Identities = 96/329 (29%), Positives = 157/329 (47%), Gaps = 25/329 (7%)
Query: 2 AEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLD-----KPLHVEFYG 56
+ + L E PST+R +S +P T+ I Y G+S +R LD P V+F G
Sbjct: 1 SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60
Query: 57 EHGYPVTVARYSP--NGEWIASADVSGSVRIWGTHNGFVL-------KNEFKVLSGRIDD 107
VT ++SP +++ S D SG V +WG K+EF+VL+G I D
Sbjct: 61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120
Query: 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167
+ W +G R+ +F WDSG ++G+ GHS+R+ +C K +RP R T G
Sbjct: 121 ISWDFEGRRL-CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179
Query: 168 EDFLVNFYEGPPFK---FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL-IYDGKSGE 223
+D V FY+GPPFK +H + +FV + FSPD + + + + +DGKSGE
Sbjct: 180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239
Query: 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283
+ + D +K TV AD + +VW D + + ++ + +
Sbjct: 240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW----DVTTSKCVQKW-TLDKQ 294
Query: 284 AVEDMLVGCLWQND-HLITVSLGGIISIF 311
+ + VG + + +I++SL G ++ +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 5e-06
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAI-VWDRVSKEVKLNNMLF--HTARINCLAWSP-- 547
R T + Y P + A G + D +V ++ + + +SP
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 548 SSTMVATGSIDTCVIIYEIGKPASSRI------TIKNAHLGGVYGVAFMDD 592
S + +G VI++ S + G + +++ +
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE 126
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 7e-04
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Query: 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI--GKPASSRITIKNAHLGGVYGVA 588
+ S AT D + ++++ K K GV
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304
Query: 589 FMDDFNVVSSGEDACIRVWRL 609
+ ++S D + + L
Sbjct: 305 ATGNGRIISLSLDGTLNFYEL 325
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.3 bits (238), Expect = 2e-22
Identities = 39/232 (16%), Positives = 87/232 (37%), Gaps = 26/232 (11%)
Query: 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQW 110
+ H + V+ PNG+ I SA ++++W G+ + F + ++
Sbjct: 93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWVRMVRP 151
Query: 111 SPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPF--------- 161
+ DG I +C + + VR ++ + + H V + P +
Sbjct: 152 NQDGTLIASCSNDQ---TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208
Query: 162 ----------RIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211
+ + D + ++ ++ H N+V + F G ++S + D
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 268
Query: 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWE 263
+ ++D K+ + + H + ++ + V+T S D++ KVWE
Sbjct: 269 KTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.2 bits (222), Expect = 2e-20
Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 32/334 (9%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292
GH + V + P +++ S D + KVW D G +T +++V+D+
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVW----DYETGDFERTL-KGHTDSVQDISFDH 69
Query: 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGA- 351
+ + + + F + +V +VS + + I+S+S D
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP----NGDHIVSASRDKTI 125
Query: 352 IIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG 411
+ ++ + + + + +++ RV + + AE +
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 412 SQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471
+S A S ++ G + G ++
Sbjct: 186 HVVECISWAPESSYSSISEATG-------------------SETKKSGKPGPFLLSGSRD 226
Query: 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531
+ ++ + +T M L H + + + S ++ VWD +K +
Sbjct: 227 KTIKMWDV--STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MK 283
Query: 532 NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565
+ H + L + ++ V TGS+D V ++E
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 89.4 bits (220), Expect = 4e-20
Identities = 53/318 (16%), Positives = 105/318 (33%), Gaps = 37/318 (11%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H PVT + P + SA ++++W G + L G D +Q
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----RTLKGHTDSVQDISFDHSG 71
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177
++ + + + GH V S P I + D + +E
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEV 130
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237
+ H +V +R + DG+ + S S+D+ ++ + E E H
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---EHRHV 187
Query: 238 IYAVSW--------------------SPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
+ +SW G +L+ S DK+ K+W D S G + T
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW----DVSTGMCLMTL 243
Query: 278 ASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALK 337
+ V +++ + + ++ N + + + H V++L
Sbjct: 244 VGHDNWV---RGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSL-DFH 298
Query: 338 ISQQTILSSSYDGAIIKW 355
+ +++ S D + W
Sbjct: 299 KTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.4 bits (194), Expect = 1e-16
Identities = 53/345 (15%), Positives = 118/345 (34%), Gaps = 34/345 (9%)
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237
PP K+ LS H + V + F P S ++S S D ++D ++G+ GH S
Sbjct: 7 PPEKYALSG--HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK---GHTDS 61
Query: 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297
+ +S+ GK + + SAD + K+W+ + + + + V + D
Sbjct: 62 VQDISFDHSGKLLASCSADMTIKLWDF-------QGFECIRTMHGHDHNVSSVSIMPNGD 114
Query: 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357
H+++ S I ++ +F+GH + + I S S D + W+
Sbjct: 115 HIVSASRDKTIKMWEVQT-GYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
Query: 358 GVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDL 417
+++ ++C++ E +++ + + GS+ D
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS---GKPGPFLLSGSR--DK 227
Query: 418 SLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIY 477
++ + + +M+ + V G + + L ++
Sbjct: 228 TIKMWDVS-------------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 478 SISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522
L H +T + + + ++ VW+
Sbjct: 275 DY--KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.4 bits (181), Expect = 4e-15
Identities = 31/201 (15%), Positives = 70/201 (34%), Gaps = 19/201 (9%)
Query: 35 YCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94
+++ + + V+ + H V + R + +G IAS +VR+W
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KEC 177
Query: 95 KNEFKVLSGRIDDLQWSPDGLRIVACGD-----------------GKGKSFVRAFMWDSG 137
K E + ++ + W+P+ G ++ + +G
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237
Query: 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIR 197
+ GH V F F I +C +D + ++ + + H +FV +
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 296
Query: 198 FSPDGSKLISVSSDRKGLIYD 218
F +++ S D+ +++
Sbjct: 297 FHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.6 bits (166), Expect = 3e-13
Identities = 38/311 (12%), Positives = 97/311 (31%), Gaps = 31/311 (9%)
Query: 322 SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEE 381
+ SGH V+ + ++S+S D I W G + K + ++ ++
Sbjct: 12 ALSGHRSPVTRV-IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 382 VIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSL 441
A + + + + + + + ++ I + +
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 442 KVMSKIDL----GFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAI 497
+ + V DG+ + + ++ ++ L +HR +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--AELREHRHVV 188
Query: 498 TVIQYSPDVSMFA--------------------SADGNREAIVWDRVSKEVKLNNMLFHT 537
I ++P+ S + S ++ +WD + L ++ H
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHD 247
Query: 538 ARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VV 596
+ + + + + + D + +++ + NAH V + F VV
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDY--KNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305
Query: 597 SSGEDACIRVW 607
+ D ++VW
Sbjct: 306 TGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 4e-07
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 1/111 (0%)
Query: 12 CAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNG 71
+ S G SG P + +++ + + + + H V + G
Sbjct: 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 259
Query: 72 EWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD 122
++I S ++R+W N +K + L + +V
Sbjct: 260 KFILSCADDKTLRVWDYKNKRCMK-TLNAHEHFVTSLDFHKTAPYVVTGSV 309
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 4e-06
Identities = 30/177 (16%), Positives = 65/177 (36%), Gaps = 26/177 (14%)
Query: 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN 515
+I P+G + ++ + ++ + T HR + +++ + D ++ AS +
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164
Query: 516 REAIVWDRVSKEVKLNNMLFHTARINCLAW--------------------SPSSTMVATG 555
+ VW +KE K + H + C++W + +G
Sbjct: 165 QTVRVWVVATKECKAE-LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
Query: 556 SIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIRVWRLAT 611
S D + ++++ + H V GV F ++S +D +RVW
Sbjct: 224 SRDKTIKMWDVST--GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 2/126 (1%)
Query: 486 EEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAW 545
E+ L HR +T + + P S+ SA + VWD + + + HT + +++
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISF 67
Query: 546 SPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIR 605
S ++ I + T+ + ++VS+ D I+
Sbjct: 68 DHSGKLL-ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126
Query: 606 VWRLAT 611
+W + T
Sbjct: 127 MWEVQT 132
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 91.7 bits (226), Expect = 9e-21
Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 6/142 (4%)
Query: 123 GKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED--FLVNFYEGPPF 180
G + + + G F GH + + F P AT +D +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQE 260
Query: 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYA 240
SH + + FS G L++ D ++D ++ G + GH +
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA---GHDNRVSC 317
Query: 241 VSWSPDGKKVLTVSADKSAKVW 262
+ + DG V T S D K+W
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.8 bits (221), Expect = 4e-20
Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 12/298 (4%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H + + + + SA G + IW ++ + + S + ++P G
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAPSG-NY 111
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177
VACG + G + + +I T D ++
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237
+ + H+ V + +PD +S + D ++D + G F GH
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESD 228
Query: 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297
I A+ + P+G T S D + +++++ D +V
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-----FSKSGR 283
Query: 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355
L+ +++ A D+ +GH VS L + + + S+D + W
Sbjct: 284 LLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCL-GVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.2 bits (191), Expect = 3e-16
Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 3/161 (1%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H V +P+ S S ++W G + F I+ + + P+G
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ-TFTGHESDINAICFFPNG-NA 240
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177
A G + D D + S F + + +DF N ++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDA 299
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218
H N V+C+ + DG + + S D I++
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.5 bits (184), Expect = 2e-15
Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Query: 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFAS 511
+ A P+G+ G + ++ + + + IT + +S + +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 512 ADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIY 564
+ VWD + + + + H R++CL + VATGS D+ + I+
Sbjct: 288 GYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.7 bits (174), Expect = 4e-14
Identities = 40/295 (13%), Positives = 95/295 (32%), Gaps = 14/295 (4%)
Query: 322 SFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA-AVE 380
+ GH+ + + + ++S+S DG +I W + + A A
Sbjct: 50 TLRGHLAKIYAM-HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS------QPLDLSLALSSPELALVSTESG 434
G + + + + G+ + + +T +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 435 VILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHR 494
+ + + V + ++APD + G + ++ + H
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV--REGMCRQTFTGHE 226
Query: 495 GAITVIQYSPDVSMFASADGNREAIV-WDRVSKEVKLNNMLFHTARINCLAWSPSSTMVA 553
I I + P+ + FA+ + + R +E+ + I +++S S ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 554 TGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIRVW 607
G D +++ K R + H V + DD V + D+ +++W
Sbjct: 287 AGYDDFNCNVWDALKA--DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.4 bits (168), Expect = 2e-13
Identities = 37/349 (10%), Positives = 87/349 (24%), Gaps = 53/349 (15%)
Query: 178 PPFKFKLSH--REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235
+ + R H + + + D L+S S D K +I+D + K+
Sbjct: 41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI---PLRS 97
Query: 236 GSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQ 295
+ +++P G V D ++ + RV + A T +
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157
Query: 296 NDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355
+ + ++ + +S + D + W
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL------APDTRLFVSGACDASAKLW 211
Query: 356 IRGVGYSSKLEKKYDARIKCLA--AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413
G + +++ I + T D L + D
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGK 473
+T+ + + G + G +
Sbjct: 272 G--------------------------------------ITSVSFSKSGRLLLAGYDDFN 293
Query: 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522
+++ VL H ++ + + D A+ + +W+
Sbjct: 294 CNVWDAL--KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.0 bits (141), Expect = 5e-10
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552
H G + + +PD +F S + A +WD H + IN + + P+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAF 241
Query: 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-VVSSGEDACIRVWRLAT 611
ATGS D ++++ + + G+ V+F +++ +D VW
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.5 bits (119), Expect = 2e-07
Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQW 110
+ +T +S +G + + + +W R+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG-VLAGHDNRVSCLGV 320
Query: 111 SPDGLRIVACGDGKGKSFVRAFMWD 135
+ DG+ + F++ +W+
Sbjct: 321 TDDGMAVATGSWDS---FLK--IWN 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.2 bits (222), Expect = 5e-20
Identities = 52/343 (15%), Positives = 118/343 (34%), Gaps = 39/343 (11%)
Query: 44 RYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKN------- 96
R +D LH +H V ++S +GE++A+ + + +++ +G ++
Sbjct: 49 REIDVELHKSL--DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA 105
Query: 97 ----------EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH 146
I + +SPDG + + + + +
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLI 206
++ + D V ++ + L+ DG +
Sbjct: 166 IY----SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221
Query: 207 SVSSDRKGLIYDGKSGEKIGEFSSED----GHHGSIYAVSWSPDGKKVLTVSADKSAKVW 262
+ S DR ++D ++G + SE+ GH S+Y+V ++ DG+ V++ S D+S K+W
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 263 EILEDGSGGRVIKTFASS---TSNAVEDMLVGCLWQND--HLITVSLGGIISIFSASNLD 317
+ + + + T +D ++ + ++++ S + + +
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-G 340
Query: 318 KAPLSFSGHVKNVSTLTALKISQ-----QTILSSSYDGAIIKW 355
L GH +V ++ S + S D W
Sbjct: 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.6 bits (197), Expect = 6e-17
Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 49/241 (20%)
Query: 36 CNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV-- 93
R+V I L TVA +G++IA+ + +VR+W + GF+
Sbjct: 182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 94 ----LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRR 149
+ + ++ DG +V+ + V+ + + D
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR---SVKLWNLQNANNKSDSKTP--- 295
Query: 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS 209
++++ H +FV + + + ++S S
Sbjct: 296 ----------------------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAV------SWSPDGKKVLTVSADKSAKVWE 263
DR L +D KSG + GH S+ +V S P+ T S D A++W+
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQ---GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Query: 264 I 264
Sbjct: 385 Y 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.3 bits (178), Expect = 2e-14
Identities = 54/395 (13%), Positives = 117/395 (29%), Gaps = 71/395 (17%)
Query: 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHR-EHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217
+ T L N +L +H++ V C++FS DG + ++ ++ +Y
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVY 88
Query: 218 DGKSGEKIGEFS---------------SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVW 262
G + S S I +V +SPDGK + T + D+ ++W
Sbjct: 89 RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148
Query: 263 EILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322
+I E + + VS G ++
Sbjct: 149 DI---------ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199
Query: 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY-------SSKLEKKYDARIKC 375
V+T+ + I + S D A+ W G+ ++ + +
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259
Query: 376 LA--AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES 433
+ + + + D V L
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE------------------ 301
Query: 434 GVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH 493
++ I V + A + + G ++ + + + ++L+ H
Sbjct: 302 ----------VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK--KSGNPLLMLQGH 349
Query: 494 RGAITVIQY------SPDVSMFASADGNREAIVWD 522
R ++ + P+ ++FA+ G+ +A +W
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.1 bits (175), Expect = 4e-14
Identities = 58/414 (14%), Positives = 118/414 (28%), Gaps = 70/414 (16%)
Query: 188 EHSNFVNCIRFSPDGSK---LISVSSDRKGLIYDGKSGEKI-GEFSSEDGHHGSIYAVSW 243
HS + D + ++ ++Y+ +I E H + V +
Sbjct: 11 NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 70
Query: 244 SPDGKKVLTVSADKSAKVWEI--------LEDGSGGRVIKTFASSTSNAVEDMLVGCL-W 294
S DG+ + T +K+ +V+ + L D S +++S+ D+ + + +
Sbjct: 71 SNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 295 QNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIK 354
D + I ++ + + S ++S S D +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 355 WIRGVGYSSKLEKKYDARIKCLA--AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412
W G S D + I D V G +
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-------- 241
Query: 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT--VTACAIAPDGSEAIVGGQ 470
L ++ G V + DG + G
Sbjct: 242 ---------------------------RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274
Query: 471 NGKLHIYSISGNTL----------TEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIV 520
+ + ++++ T E+ H+ + + + + S +R +
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
Query: 521 WDRVSKEVKLNNMLFHTARINCLA------WSPSSTMVATGSIDTCVIIYEIGK 568
WD+ S L + H + +A P + ATGS D I++ K
Sbjct: 335 WDKKSGN-PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.7 bits (166), Expect = 5e-13
Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 25/177 (14%)
Query: 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTL-----TEEMVLEKHRGAITVIQYSPDVSMFA 510
DG G + + ++ L +E H+ ++ + ++ D
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 511 SADGNREAIVWDRVSKEVK-----------LNNMLFHTARINCLAWSPSSTMVATGSIDT 559
S +R +W+ + K + H + +A + + + +GS D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 560 CVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN-------VVSSGEDACIRVWRL 609
V+ ++ + + + + H V VA + + + D R+W+
Sbjct: 331 GVLFWDK--KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 17/127 (13%)
Query: 502 YSPDVSMFASADGNREAIVWDRVSKEV------KLNNMLFHTARINCLAWSPSSTMVATG 555
D A+ +R VWD + + + + H + + ++ V +G
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 556 SIDTCVIIYEIGKPASSR----------ITIKNAHLGGVYGVAFMDDFN-VVSSGEDACI 604
S+D V ++ + + H V VA + ++S +D +
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332
Query: 605 RVWRLAT 611
W +
Sbjct: 333 LFWDKKS 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 21/124 (16%)
Query: 497 ITVIQYSPDVSMFASA---DGNREAIVWDRVSK---EVKLNNMLFHTARINCLAWSPSST 550
I D A N I+++ +V+L+ L HT+ + C+ +S
Sbjct: 16 IPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE 75
Query: 551 MVATGSIDTCVI---------------IYEIGKPASSRITIKNAHLGGVYGVAFMDDFNV 595
+ATG T + P + + + + V F D
Sbjct: 76 YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135
Query: 596 VSSG 599
+++G
Sbjct: 136 LATG 139
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 10/130 (7%)
Query: 1 MAEVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKP--LHVEFYGEH 58
H Y+ + + G+ ++ ++ + + Y H
Sbjct: 249 SGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 59 GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRI------DDLQWSP 112
V + N E+I S V W +G L + + + P
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-MLQGHRNSVISVAVANGSSLGP 366
Query: 113 DGLRIVACGD 122
+
Sbjct: 367 EYNVFATGSG 376
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (188), Expect = 6e-16
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
H + V ++F+ G +S D + G I + S+ + S
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISV 316
Query: 246 DGKKVLTVSADKSAKVWEIL 265
D K ++T S DK A V+E++
Sbjct: 317 DDKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 40/335 (11%), Positives = 90/335 (26%), Gaps = 20/335 (5%)
Query: 156 KPTRPFRIATCGEDFLVNFYE------GPPFKFKLSHR-EHSNFVNCIRFSPDGSKLISV 208
KP F + G+ V F G P + + H V + S + +
Sbjct: 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYT- 68
Query: 209 SSDRKGLIYDGKSGEKIGEFSSED--GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILE 266
++D S D I + PDG ++ + +W++
Sbjct: 69 GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128
Query: 267 DGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGH 326
+ T ++ A+ + + +I ++ +
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCC-------SDGNIAVWDLHNQTLVRQFQG 181
Query: 327 VKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386
+ ++ + + + D + W G + +I L + A
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLA 240
Query: 387 GFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLD--SLKVM 444
L + + S L L A ++ + +
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
Query: 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSI 479
+ +V +C I+ D + G + K +Y +
Sbjct: 301 FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 3e-11
Identities = 36/303 (11%), Positives = 90/303 (29%), Gaps = 22/303 (7%)
Query: 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF----VLKNEFKVLSGRIDDLQWSP 112
HG V S + + G V++W + V + + I + P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
DG ++ G+ S ++ + V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
+ + H++ +CI S DG+KL + D +D + G ++ +
Sbjct: 168 WDLHNQTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---- 221
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292
I+++ + P G+ + + +V + + + +
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV--------NKPDKYQLHLHESCVLSLKF 273
Query: 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352
+ ++ +++ + A + S +V + + + + I++ S D
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPY--GASIFQSKESSSVLSC-DISVDDKYIVTGSGDKKA 330
Query: 353 IKW 355
+
Sbjct: 331 TVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 51/330 (15%), Positives = 98/330 (29%), Gaps = 13/330 (3%)
Query: 196 IRFSPDGS-KLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254
+ DG + + D + +I H + AV+ S + V T
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL----NHGEVVCAVTISNPTRHVYTGG 70
Query: 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSAS 314
KVW+I G+ V + + N + L LI +SI+ +
Sbjct: 71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRS--CKLLPDGCTLIVGGEASTLSIWDLA 127
Query: 315 NLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIK 374
+ A+ + S DG I W + + +
Sbjct: 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 187
Query: 375 CL--AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE 432
C+ + ++T G DN V L EG L + + S+
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN 247
Query: 433 SGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK 492
V+ ++ V + A G + G++ L+ + + K
Sbjct: 248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK 304
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWD 522
++ S D + G+++A V++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552
H + ++++ F S + W ++ + S +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISVDDKYI 321
Query: 553 ATGSIDTCVIIYEI 566
TGS D +YE+
Sbjct: 322 VTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 7e-08
Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM 590
+ H + + L ++ + D + + ++ V
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT---PYGASIFQSKESSSVLSCDIS 315
Query: 591 -DDFNVVSSGEDACIRVWRL 609
DD +V+ D V+ +
Sbjct: 316 VDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 4e-07
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 6/116 (5%)
Query: 103 GRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFR 162
+I L + P G + + + D H VLS +F +
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKW- 279
Query: 163 IATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218
+ G+D L+N + P + + S+ V S D +++ S D+K +Y+
Sbjct: 280 FVSTGKDNLLNAWRTPYGA-SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 504 PDVSMFASADGN-------REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS 556
P S +ADG +A++ + + + N L H + + S + V TG
Sbjct: 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG 70
Query: 557 IDTCVIIYEIGKP---ASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVW 607
CV +++I P + + + D + G +A
Sbjct: 71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 7/112 (6%)
Query: 24 ISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSV 83
+ P + + S + H V +++ G+W S +
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289
Query: 84 RIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD 135
W T G + + S + S D IV K +A +++
Sbjct: 290 NAWRTPYGASIFQSKE--SSSVLSCDISVDDKYIVTGSGDK-----KATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 493 HRGAITVIQYSPDVSMFASADGNREAIVWD----RVSKEVKLNNMLFHTARINCLAWSPS 548
H + + S + G VWD V + L I P
Sbjct: 50 HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 549 STMVATGSIDTCVIIY 564
+ G + + I+
Sbjct: 109 GCTLIVGGEASTLSIW 124
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.002
Identities = 27/205 (13%), Positives = 59/205 (28%), Gaps = 8/205 (3%)
Query: 410 VGSQPLDLSLALSSPELALVSTESGVILL----DSLKVMSKIDLGFTVTACAIAPDGSEA 465
+GS+P + ++ V ++ + ++ ++ G V A I+
Sbjct: 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-H 65
Query: 466 IVGGQNGKLHIYSISGN---TLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522
+ G G + ++ IS + ++ I + PD +WD
Sbjct: 66 VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125
Query: 523 RVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLG 582
+ ++ L +A + V I + + G
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185
Query: 583 GVYGVAFMDDFNVVSSGEDACIRVW 607
D + + G D +R W
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSW 210
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.2 bits (175), Expect = 4e-14
Identities = 51/370 (13%), Positives = 103/370 (27%), Gaps = 26/370 (7%)
Query: 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
H ++C ++ D +++ ++ + IY+ KSG K + H+G + V W+P
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305
D +++T D++A VW + ++ + + V + V
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI-- 119
Query: 306 GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAII------------ 353
I ++ V +L S S I
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179
Query: 354 -----KWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHI 408
G + + A + + +
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239
Query: 409 DVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDL-GFTVTACAIAPDGSEAIV 467
+ PL ++ L + +L K+ G + G A
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299
Query: 468 GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD----VSMFASADGNREAIVWDR 523
QN S G+ + H+ +++ I S F + + +WD
Sbjct: 300 RFQNLDKKA-SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
Query: 524 VSKEVKLNNM 533
S E L ++
Sbjct: 359 RSLESALKDL 368
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.0 bits (164), Expect = 7e-13
Identities = 51/362 (14%), Positives = 105/362 (29%), Gaps = 21/362 (5%)
Query: 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNG-FVLKNEFKVLSGRIDDLQWSPDGLRIVA 119
P++ ++ + IA + V I+ +V +E K +G++ + W+PD RIV
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 120 CG-DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGP 178
CG D + T V + R + + + + F +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 179 PFKFKLSHREHSNF-VNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237
+ ++ V + + P+ L + S D K I+ E +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297
+ V + + S + + AV + L
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 298 H-------LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG 350
L+ +F+ + LSF G + +V ++ + + D
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDS-AAGKLSFGGRL-DVPKQSSQRGLTARERFQNLDK 306
Query: 351 AIIKWIRGVGYSSKLEKKYDARIKCLAAVEE------VIFTAGFDN--KVWRVPLCEGEC 402
+ L+ + + ++ + T G D +W V E
Sbjct: 307 KASSEGSAAA-GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 365
Query: 403 GD 404
D
Sbjct: 366 KD 367
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.3 bits (152), Expect = 3e-11
Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 4/164 (2%)
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
++ A D ++ + N ++HIY SGN + L++H G +T + ++PD + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 513 DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI---DTCVIIYEIGKP 569
+R A VW + K ++ R + + +E
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 570 ASSRITIKNAHLGGVYGVAFMDDFNVV-SSGEDACIRVWRLATE 612
IK V + + + ++ + D R++ +
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.1 bits (141), Expect = 5e-10
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 535 FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN 594
F I+C AW+ T +A + V IYE ++ H G V GV + D N
Sbjct: 5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN 64
Query: 595 -VVSSGEDACIRVW 607
+V+ G D VW
Sbjct: 65 RIVTCGTDRNAYVW 78
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.7 bits (140), Expect = 6e-10
Identities = 30/384 (7%), Positives = 94/384 (24%), Gaps = 35/384 (9%)
Query: 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293
I +W+ D ++ + ++E G+ + + V +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK--SGNKWVQVHEL-KEHNGQVTGVDWAP- 61
Query: 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAII 353
++ ++T +++ P + + +++ S I
Sbjct: 62 -DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120
Query: 354 KWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQ 413
+ K I+ + + + +
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRS-------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
Query: 414 PLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGK 473
++ T G + + V + +GS +
Sbjct: 174 EVEERP---------APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224
Query: 474 LHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA-DGNREAIVWDRVSKEVKLNN 532
+ + + + + + + S+ A+ D +D + ++
Sbjct: 225 VCLADADKKMAVATL--ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG 282
Query: 533 MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDD 592
L + S + A A++ + + H V ++ +
Sbjct: 283 RLDVPKQ------SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336
Query: 593 FN-----VVSSGEDACIRVWRLAT 611
++G D + +W + +
Sbjct: 337 GKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.1 bits (102), Expect = 3e-05
Identities = 38/325 (11%), Positives = 74/325 (22%), Gaps = 23/325 (7%)
Query: 47 DKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRID 106
+K + V EH VT ++P+ I + + +W + R
Sbjct: 39 NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA 98
Query: 107 DLQWSPDGLRIVACGDGKGKSFVRAFM-WDSGTTVGDFDGHSRRVLSCEFKPTRPFRIAT 165
+ A G G + F + R + +A
Sbjct: 99 RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158
Query: 166 CGEDFLVNFYE------GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDG 219
DF + + S + V G
Sbjct: 159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 218
Query: 220 KSG---------EKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSG 270
S +K ++ + AV++ + ++ D ++
Sbjct: 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITES-SLVAAGHDCFPVLF----TYDS 273
Query: 271 GRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNV 330
+F + G S SA+ V +
Sbjct: 274 AAGKLSFGGRLDVPKQSSQRG--LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 331
Query: 331 STLTALKISQQTILSSSYDGAIIKW 355
S L+ K ++ DG + W
Sbjct: 332 SVLSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.0 bits (169), Expect = 8e-14
Identities = 67/302 (22%), Positives = 122/302 (40%), Gaps = 29/302 (9%)
Query: 317 DKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCL 376
D+ + SGH K + TAL ++ ++S SYDG I++W SS + + + I L
Sbjct: 3 DEVLKTISGHNKGI---TALTVN--PLISGSYDGRIMEW-----SSSSMHQDHSNLIVSL 52
Query: 377 AAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVI 436
+ +++ + +V ++ + A+++ + ++
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANN--------DGFTAVLTNDDDLL 104
Query: 437 LLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGA 496
+L S + A++ + VG + G + + R
Sbjct: 105 ILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 164
Query: 497 ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINC----------LAWS 546
+ I SP + A+ D + +++D S+EVK + F T++IN
Sbjct: 165 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 224
Query: 547 PSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRV 606
+VATGS+DT + IY + +P I NAH GV + + +VSSG DACI+
Sbjct: 225 IEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 283
Query: 607 WR 608
W
Sbjct: 284 WN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.7 bits (124), Expect = 4e-08
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
+ + + S D IY K KI + + H + + W
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALNAHKDGVNNLLWET 268
Query: 246 DGKKVLTVSADKSAKVWEIL 265
+++ AD K W ++
Sbjct: 269 PS-TLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 1e-04
Identities = 31/292 (10%), Positives = 75/292 (25%), Gaps = 19/292 (6%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI--LEDGSGGRVIKTFASSTSNAVEDMLV 290
GH+ I A++ +P +++ S D W + ++ S
Sbjct: 11 GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD 66
Query: 291 GCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDG 350
L N + ++ A L+ + + + T I + S
Sbjct: 67 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126
Query: 351 AIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDV 410
++ + VG + + + + + P +
Sbjct: 127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186
Query: 411 GSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ 470
L ++ + K+ + A + G
Sbjct: 187 LLYDLQ-----------SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 471 NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522
+ + IYS+ + L H+ + + + S S+ + W+
Sbjct: 236 DTNIFIYSVK-RPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 41/314 (13%), Positives = 77/314 (24%), Gaps = 37/314 (11%)
Query: 47 DKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRID 106
D+ L G H +T +P + S G + W + + + S I
Sbjct: 3 DEVLKT-ISG-HNKGITALTVNP----LISGSYDGRIMEWSSSSM------HQDHSNLIV 50
Query: 107 DLQWSPDG-LRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIAT 165
L S ++ D + + + S V + + + T
Sbjct: 51 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110
Query: 166 CGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225
V + K +
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI------------------QVFKLSDLE 152
Query: 226 GEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285
F + +S SP + ++++ S +
Sbjct: 153 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS 212
Query: 286 EDM----LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQ 341
+ D + T SL I I+S K + + H V+ L +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE--TPS 270
Query: 342 TILSSSYDGAIIKW 355
T++SS D I +W
Sbjct: 271 TLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.004
Identities = 10/131 (7%), Positives = 31/131 (23%), Gaps = 6/131 (4%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
++ + S K + R+ + +
Sbjct: 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA 220
Query: 65 ARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK 124
+ +A+ + ++ I+ + +++L W + + D
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADAC 280
Query: 125 GKSFVRAFMWD 135
K W+
Sbjct: 281 IK------RWN 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 4e-13
Identities = 52/332 (15%), Positives = 110/332 (33%), Gaps = 25/332 (7%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292
GH + G ++++ S D + KVW G+ ++T T V
Sbjct: 14 GHDDHVITC-LQFCGNRIVSGSDDNTLKVW----SAVTGKCLRTLVGHTGG------VWS 62
Query: 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352
D++I + + + GH V + + ++ ++S S D +
Sbjct: 63 SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM---HLHEKRVVSGSRDATL 119
Query: 353 IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412
W G + + A ++C+ + + +D V + + E H G
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK---VWDPETETCLHTLQGH 176
Query: 413 QPLDLSLALSSPELALVSTESGVILLD-SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN 471
SL + S ++ + + D G + + + G +
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 236
Query: 472 GKLHIYSISGNT-LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD----RVSK 526
+ I+ I L KH+ A+T +Q++ + + +S DG +WD +
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT--VKLWDLKTGEFIR 294
Query: 527 EVKLNNMLFHTARINCLAWSPSSTMVATGSID 558
+ + + S + + A GS +
Sbjct: 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 8e-12
Identities = 33/241 (13%), Positives = 76/241 (31%), Gaps = 12/241 (4%)
Query: 24 ISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSV 83
+ + + R +R D + G+ V +G + S V
Sbjct: 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 159
Query: 84 RIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDF 143
++W L + DG+ +V+ +R + ++G +
Sbjct: 160 KVWDPETETCLH---TLQGHTNRVYSLQFDGIHVVSGSLDT---SIRVWDVETGNCIHTL 213
Query: 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRF-SPDG 202
GH E K + + D V ++ + + + + + + +
Sbjct: 214 TGHQSLTSGMELKDNI---LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270
Query: 203 SKLISVSSDRKGLIYDGKSGEKIGEFSS--EDGHHGSIYAVSWSPDGKKVLTVSADKSAK 260
+ +I+ S D ++D K+GE I + G G ++ + S S + + +
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 261 V 261
Sbjct: 331 T 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (142), Expect = 4e-10
Identities = 43/345 (12%), Positives = 105/345 (30%), Gaps = 33/345 (9%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
H + V G++++S S D ++ +G+ + GH G +++ +
Sbjct: 15 HDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV---GHTGGVWSSQMRDNII 70
Query: 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308
+ E E + + ++ G + + G +
Sbjct: 71 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 130
Query: 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368
+ + +V+ + ++ + ++S +YD + W +
Sbjct: 131 HVL---------------MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175
Query: 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELAL 428
+ R+ L + + D + + + E G+ H G Q L + L L
Sbjct: 176 HTNRVYSLQFDGIHVVSGSLDTSIR---VWDVETGNCIHTLTGHQSLTSGMELKDNILVS 232
Query: 429 VSTESGVILLD----SLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484
+ +S V + D + + + + I +G + ++ +
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292
Query: 485 TEEMVLEK---HRGAITVIQYSPDVSMFASADGNREA----IVWD 522
+V + G + I+ S + A N +V D
Sbjct: 293 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 2e-09
Identities = 47/298 (15%), Positives = 101/298 (33%), Gaps = 27/298 (9%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
H V G I S ++++W G L+ +G + Q + +
Sbjct: 15 HDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLR-TLVGHTGGVWSSQMRDNIIIS 72
Query: 118 VACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177
+ + R+ + D + ++
Sbjct: 73 GSTDRTLKVWNAETGEC--------IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124
Query: 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237
+ H V C+++ +++S + D ++D ++ + GH
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQ---GHTNR 179
Query: 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297
+Y S DG V++ S D S +VW D G I T + + G +++
Sbjct: 180 VY--SLQFDGIHVVSGSLDTSIRVW----DVETGNCIHTL-----TGHQSLTSGMELKDN 228
Query: 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355
L++ + + I+ + + G K+ S +T L+ ++ +++SS DG + W
Sbjct: 229 ILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 9e-09
Identities = 48/366 (13%), Positives = 110/366 (30%), Gaps = 42/366 (11%)
Query: 134 WDSGT--TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSN 191
W G + GH V++C + RI + +D + + K + H+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 192 FVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251
V + + S K + + + K+V+
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETG-------ECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 252 TVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311
+ S D + +VW D G+ + + + +++ + ++ ++
Sbjct: 112 SGSRDATLRVW----DIETGQCLHVLMGHVAAVRCVQ-----YDGRRVVSGAYDFMVKVW 162
Query: 312 SASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371
+ + GH V + L+ ++S S D +I W G + +
Sbjct: 163 DPET-ETCLHTLQGHTNRVYS---LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218
Query: 372 RIKCLAAVEEVIFTAGFDN--KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALV 429
+ + ++ + D+ K+W + + S L + +
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ---FNKNFVIT 275
Query: 430 STESGVI---------LLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG----KLHI 476
S++ G + + +L + G V + VG +NG KL +
Sbjct: 276 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 477 YSISGN 482
+
Sbjct: 336 LDFDVD 341
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 11/294 (3%)
Query: 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377
K+P GH +V +T L+ I+S S D + W G + + +
Sbjct: 7 KSPKVLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64
Query: 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVIL 437
+ +I + D + GEC + + + + + + +
Sbjct: 65 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTST----VRCMHLHEKRVVSGSRDATLR 120
Query: 438 LDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAI 497
+ ++ + + A V + T T L+ H
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TN 178
Query: 498 TVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSI 557
V D S + VWD V ++ + H + + + + ++ +G+
Sbjct: 179 RVYSLQFDGIHVVSGSLDTSIRVWD-VETGNCIHTLTGHQSLTSGMELKDN--ILVSGNA 235
Query: 558 DTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLAT 611
D+ V I++I + + V++S +D +++W L T
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 68.4 bits (165), Expect = 5e-13
Identities = 38/386 (9%), Positives = 84/386 (21%), Gaps = 55/386 (14%)
Query: 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK 257
FSP LI+ S + I D + + I V D K +
Sbjct: 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVL-----KVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 258 SAKVWEILEDGSGGRVIKTFASSTSNAV----EDMLVGCLWQNDHLITVSLGGIISIFSA 313
+ + D G+ K + + + + + I
Sbjct: 65 GDFLG--IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 314 SNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYS-SKLEKKYDAR 372
+A ++ N + + AI + + +
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182
Query: 373 IKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTE 432
A + ++ + + PL
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI---------------- 226
Query: 433 SGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVG-----GQNGKLHIYSISGNTLTEE 487
+ + P + G + ++
Sbjct: 227 -----------------PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSP 547
+ LE +V + + + A + +D +++V + L S
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSA 324
Query: 548 SSTMVATGSIDTCVIIYEIGKPASSR 573
V D + + + KP R
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDER 350
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 16/217 (7%), Positives = 46/217 (21%), Gaps = 19/217 (8%)
Query: 58 HGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRI 117
+A P V ++ ++ + + + D +
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH--DYAPAFDADSKNL 193
Query: 118 VACGDGKGKSF----VRAFMWDSGTTVGDFDGHSRRVLSCEFKP------TRPFRIATCG 167
V F ++ + + P + +
Sbjct: 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253
Query: 168 EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227
+ + ++ + + + L YD K+ +
Sbjct: 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---- 309
Query: 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
++ + S D K V+ D + +
Sbjct: 310 ---VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.9 bits (130), Expect = 1e-08
Identities = 27/307 (8%), Positives = 63/307 (20%), Gaps = 15/307 (4%)
Query: 58 HGYPVTVARYSPNGEWIA--SADVSGSVRIWGTHNGFVL---KNEFKVLSGRIDDLQWSP 112
+ R + + + I+ G +N V + +D
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100
Query: 113 DGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172
+ + + D T G
Sbjct: 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160
Query: 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE- 231
+ + ++ F D L +S D E S+
Sbjct: 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 220
Query: 232 ---DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288
GS P D + + S+ +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280
Query: 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSY 348
+ + G++ + + ++ ++ L ++T++
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVK--TRKVTEVKNNLTDL----RLSADRKTVMVRKD 334
Query: 349 DGAIIKW 355
DG I +
Sbjct: 335 DGKIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 53.7 bits (127), Expect = 3e-08
Identities = 46/365 (12%), Positives = 91/365 (24%), Gaps = 35/365 (9%)
Query: 64 VARYSP-NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD 122
+SP +G+ IA G I +VLK RI ++ D G
Sbjct: 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEP---LRIRYVRRGGDTKVAFIHGT 62
Query: 123 GKGKSFVRAFMWDSGT-TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181
+G ++D T F+ + V + F + ++
Sbjct: 63 REGDFL---GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 182 FK---------LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED 232
N P + +YD + +
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---- 175
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI------LEDGSGGRVIKTFASSTSNAVE 286
+ YA ++ D K + +S + E S VI S +
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 287 DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSS 346
++ + I + + + S +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV-PVHGEFAAYYQGA 294
Query: 347 SYDGAIIKWIRGVGYSSKLEKKYDARIKCLA--AVEEVIFTAGFDNKVWRVPLCEGECGD 404
G ++K+ ++ + + L A + + D K++ PL + E
Sbjct: 295 PEKGVLLKY----DVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350
Query: 405 AEHID 409
D
Sbjct: 351 TVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 44/378 (11%), Positives = 101/378 (26%), Gaps = 43/378 (11%)
Query: 154 EFKPTRPFRIATC--GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD 211
+F P IA G+ F+ + K + +R D +
Sbjct: 9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP-----EPLRIRYVRRGGDTKVAFIHGTR 63
Query: 212 RKGLIY--DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGS 269
+ D ++G+ + + G+++A+ +GK + + ++
Sbjct: 64 EGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 270 GGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKN 329
A T + D + + G ++ +++ + + +
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179
Query: 330 VSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFD 389
A + + SY R V + + ++ + G
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVL---------NFSFEVVSKPFVIPLIPGSP 230
Query: 390 NKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDL 449
N VP + + G L+ SSP +I L+
Sbjct: 231 NPTKLVP-------RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE--------SS 275
Query: 450 GFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509
+ + + G L Y + +TE + +T ++ S D
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------VKNNLTDLRLSADRKTV 329
Query: 510 ASADGNREAIVWDRVSKE 527
+ + + E
Sbjct: 330 MVRKDDGKIYTFPLEKPE 347
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.2 bits (162), Expect = 1e-12
Identities = 30/343 (8%), Positives = 97/343 (28%), Gaps = 23/343 (6%)
Query: 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248
++++ I+ P S L+ S D +Y K + + + ++ +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGII 308
+ V + ++ + + + + + L +I
Sbjct: 70 LQIYVGTVQ--GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 309 SIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK 368
+ + A + + + V + + L + + ++W R
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR----------- 176
Query: 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELAL 428
L E+ T +++ + E S +++ +
Sbjct: 177 -------LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229
Query: 429 VSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM 488
++ + +L + V + +P G +G + +++ +
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531
+V++ + ++ A + + + ++LN
Sbjct: 290 ---AKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELN 329
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 3e-11
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH 234
+ + L + VN I FSP L + SD ++ ++ +KI F+
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA----K 291
Query: 235 HGSIYAVSWSPDGKKVLTVSADKSAKVWEILE 266
V + + ++D + K ++
Sbjct: 292 FNEDSVVKIACSDNILCLATSDDTFKTNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.6 bits (137), Expect = 1e-09
Identities = 32/319 (10%), Positives = 79/319 (24%), Gaps = 18/319 (5%)
Query: 52 VEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL--SGRIDDLQ 109
V+ ++ + P+ + GS+ ++ + + L +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 110 WSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169
+ + + G +G+ + + + + A+
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 170 FLVNFYEGPPFKFKLSHREH----SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKI 225
V + + S+LI ++ + + E
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 226 GEFSSEDG-HHGSIYAVSWSPDGKKVLTVSADKSAKVW--------EILEDGSGGRVIKT 276
E G + + + S D V R +
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 277 FASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTAL 336
T+ A + ++ L T GIIS ++ K +F+ N ++ +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKF--NEDSVVKI 300
Query: 337 KISQQTILSSSYDGAIIKW 355
S + ++ D
Sbjct: 301 ACSDNILCLATSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWD--RVSKEVKLNNMLFHTARINCLAWS 546
+ + + I+ I+ P S+ + V+ +K V L L + + C +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 547 P-SSTMVATGSIDTCVIIY 564
+ + G++ ++
Sbjct: 66 DNTDLQIYVGTVQGEILKV 84
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPA-SSRITIKNAHLGGVYGVAFMDD 592
I+ + PS +++ S D + +Y+ A + + + + F+D+
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 3e-10
Identities = 51/288 (17%), Positives = 96/288 (33%), Gaps = 17/288 (5%)
Query: 68 SPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKS 127
+ + I S +++IW + + +G + LQ+ G S
Sbjct: 22 QYDDQKIVSGLRDNTIKIWDKNTLECKR-ILTGHTGSVLCLQYDER-----VIITGSSDS 75
Query: 128 FVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR 187
VR + ++G + H VL F + + + +
Sbjct: 76 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 135
Query: 188 EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247
H VN + F ++S S DR +++ + E + +GH I
Sbjct: 136 GHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTL---NGHKRGIA--CLQYRD 188
Query: 248 KKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGI 307
+ V++ S+D + ++W+ +E G+ RV++ D D I V
Sbjct: 189 RLVVSGSSDNTIRLWD-IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247
Query: 308 ISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355
A + H V L+ + I+SSS+D I+ W
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRV---FRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 23/189 (12%), Positives = 64/189 (33%), Gaps = 16/189 (8%)
Query: 81 GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTV 140
S+ +W + + ++ R D IV+ + ++ + + V
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR---TIKVWNTSTCEFV 171
Query: 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSP 200
+GH R + ++ R + + D + ++ +
Sbjct: 172 RTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWD--IECGACLRVLEGHEELVRCIRF 226
Query: 201 DGSKLISVSSDRKGLIYDGKSGEKIGEFSSE------DGHHGSIYAVSWSPDGKKVLTVS 254
D +++S + D K ++D + + H G ++ + + D ++++ S
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS 284
Query: 255 ADKSAKVWE 263
D + +W+
Sbjct: 285 HDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 6e-07
Identities = 44/293 (15%), Positives = 89/293 (30%), Gaps = 19/293 (6%)
Query: 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382
S K V L+ Q I+S D I W + ++ + + CL E V
Sbjct: 11 RSETSKGV---YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442
I T D+ V + GE + + + + + +
Sbjct: 68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127
Query: 443 VMSKIDLGF-TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQ 501
+ + L + D + + + +++ S T E V + +
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIAC 183
Query: 502 YSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCV 561
+ S + +WD + + + +G+ D +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACL---RVLEGHEELVRCIRFDNKRIVSGAYDGKI 240
Query: 562 IIYEIGKPASSR-------ITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVW 607
++++ R + H G V+ + F D+F +VSS D I +W
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 186 HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245
E S V C D K++S D I+D + E + GH GS+ + +
Sbjct: 11 RSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILT---GHTGSVLCLQYDE 65
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 42/296 (14%), Positives = 93/296 (31%), Gaps = 36/296 (12%)
Query: 110 WSPDGLRIVACG-DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168
D +IV+ D ++ + ++ GH+ VL ++ ++
Sbjct: 21 LQYDDQKIVSGLRDNT----IKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDST 76
Query: 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEF 228
+ + G + H E + DR ++D S I
Sbjct: 77 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS-----KDRSIAVWDMASPTDITLR 131
Query: 229 SSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDM 288
GH ++ V + + S D++ KVW + S ++T N +
Sbjct: 132 RVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVW----NTSTCEFVRTL-----NGHKRG 180
Query: 289 LVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSY 348
+ +++ +++ S I ++ + + ++ + I+S +Y
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGAC----LRVLEGHEELVRCIRFDNKRIVSGAY 236
Query: 349 DGAIIKWIRGVGYSSKLEKK---------YDARIKCLAAVEEVIFTAGFDN--KVW 393
DG I W + + R+ L E I ++ D+ +W
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 14/124 (11%)
Query: 450 GFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMF 509
G + + G + + ++ I + V D
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRFDNKRI 231
Query: 510 ASADGNREAIVWDRVSKEVK--------LNNMLFHTARINCLAWSPSSTMVATGSIDTCV 561
S + + VWD V+ L ++ H+ R+ L + + + S D +
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTI 289
Query: 562 IIYE 565
+I++
Sbjct: 290 LIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 9e-04
Identities = 33/299 (11%), Positives = 83/299 (27%), Gaps = 27/299 (9%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292
+Y + + D +K+++ D + K+W D + + T + +
Sbjct: 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIW----DKNTLECKRILTGHTGSVLCLQYDER 66
Query: 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352
+ + ++ N H++ + + ++I
Sbjct: 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126
Query: 353 IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412
+R V + I +A D + E +
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKY------IVSASGDRTIKVWNTSTCEF----VRTLNG 176
Query: 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKI--DLGFTVTACAIAPDGSEAIVGGQ 470
++ L + + I L ++ + + G I D + G
Sbjct: 177 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 236
Query: 471 NGKLHIYSISGNTLTEEM-------VLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522
+GK+ ++ + L +H G + +Q+ S+ + ++WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.8 bits (140), Expect = 4e-10
Identities = 38/296 (12%), Positives = 96/296 (32%), Gaps = 15/296 (5%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292
GH+ +I A+S S DGK + + A+ W D S G + F + + +
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSW----DISTGISNRVFPDVHATMITGIKTTS 65
Query: 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352
+ + + + + + + + + A+ +++ Y
Sbjct: 66 KGDLFT--VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
Query: 353 IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412
I +++ Y++ L+ ++ + G D+KV L + + I +
Sbjct: 124 IYSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 413 QPLDLSLALSSPELALVSTESGVILLDSL------KVMSKIDLGFTVTACAIAPDGSEAI 466
+ ++ + + L VI S V + +PD
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 467 VGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522
G + + +++++ + ++ H + + + SA + W+
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.8 bits (140), Expect = 5e-10
Identities = 64/291 (21%), Positives = 129/291 (44%), Gaps = 5/291 (1%)
Query: 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK-LEKKYDARIKCLA-AVE 380
GH K ++ L + +T+ S+ +G I W G S++ + I + +
Sbjct: 8 RYGHNKAITAL-SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 381 EVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDS 440
+FT +D+ + VP ++ + L LA+S+ V+ I + S
Sbjct: 67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126
Query: 441 LKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYS-ISGNTLTEEMVLEKHRGAITV 499
++++ + + + A++ D VGGQ+ K+H+Y + + ++
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186
Query: 500 IQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDT 559
+ + + N+ FHTA++ C++WSP + +ATGS+D
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246
Query: 560 CVIIYEIGKPASSRITIKNAH-LGGVYGVAFMDDFNVVSSGEDACIRVWRL 609
VI++ + KP+ I IK AH + V V ++++ +VS+G+D+ I+ W +
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.1 bits (125), Expect = 4e-08
Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 14/302 (4%)
Query: 54 FYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPD 113
YG H +T S +G+ + SAD G + W G + V + I ++ +
Sbjct: 8 RYG-HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 114 GLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVN 173
G + V A ++ + S + L +A C + +
Sbjct: 67 G-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
Query: 174 FYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG 233
+ KL+ S +C+ S D + D K +Y +
Sbjct: 126 SH------GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179
Query: 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293
+ A S + I + + S T + + V
Sbjct: 180 AEITSVAFSNNGAFLV------ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233
Query: 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAII 353
N L T SL + +++ + P+ G S + + +++ TI+S+ D I
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 354 KW 355
W
Sbjct: 294 FW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.8 bits (119), Expect = 2e-07
Identities = 22/119 (18%), Positives = 36/119 (30%)
Query: 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548
V H AIT + S D SAD WD + H I + +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 549 STMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVW 607
+ D ++ G S + N G+A D ++ + I ++
Sbjct: 67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.2 bits (115), Expect = 7e-07
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 1/112 (0%)
Query: 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDR 212
+ + S H+ V C+ +SPD +L + S D
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246
Query: 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
++++ + H S + +++ D + K W +
Sbjct: 247 SVIVWNMNKPSDH-PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.9 bits (133), Expect = 6e-09
Identities = 34/341 (9%), Positives = 78/341 (22%), Gaps = 39/341 (11%)
Query: 198 FSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL-TVSAD 256
+I + + D S +PD + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSC--VMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 257 KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNL 316
++ + + + TV+ ++
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 317 DKAPLSFSGHVKNVSTL-TALKISQQTILSSSYDGAII---------------------- 353
+ + + + T Q ++ ++ DG++
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 354 -KWIRGVGYSSKLEKKYDAR-----------IKCLAAVEEVIFTAGFDNKVWRVPLCEGE 401
W R + + + + I ++ TA V L G+
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 402 CGDAEHIDVGSQPLDLSLALSSPELALVSTES-GVILLDSLKVMSKIDLGFTVTACAIAP 460
E D+ + P L K++ +L T A
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 301
Query: 461 DGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQ 501
G + +GG L +++ + + L + T Q
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQ 342
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 32/304 (10%), Positives = 66/304 (21%), Gaps = 51/304 (16%)
Query: 14 PSTERGRGILISGNPKTDTILYCNGRSVLIRYLD--------KPLHVEFYGEHGYPVTVA 65
P +++ P T N I +D GE G +
Sbjct: 37 PDKFGPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF 94
Query: 66 RYSPNGEWIASADVSGSVRIW---GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGD 122
SP+G+ + + + + L + P + ++ D
Sbjct: 95 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 154
Query: 123 GK----GKSFVRAFMWDSGTTVGDFDGHSR------------------------RVLSCE 154
+ +G + + +
Sbjct: 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214
Query: 155 FKPTRPFRIATCGEDFLVNFYEGPPFKFKLS-HREHSNFVNCIRFSPDGSKLISVSSDRK 213
AT + + K + + SP I +R
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL 274
Query: 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273
D K + I + + Y V++ G K+ V+ +
Sbjct: 275 AKY-DLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVF----NPDTLEK 325
Query: 274 IKTF 277
+K
Sbjct: 326 VKNI 329
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 34/378 (8%), Positives = 84/378 (22%), Gaps = 64/378 (16%)
Query: 241 VSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHL- 299
+ + ++ + + V D + V K+ ++ N
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVV----DVASDTVYKSCVMPDKFGPGTAMMA--PDNRTAY 55
Query: 300 ITVSLGGIISIFSASNLD-----KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIK 354
+ + G I +++ + A+ + + ++ +
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF-AISPDGKEVYATVNPTQRLN 114
Query: 355 WIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQP 414
V F + +
Sbjct: 115 DHYVVKPP---------------------RLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 153
Query: 415 LDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKL 474
D SL ++ P++ + ++G T + + +
Sbjct: 154 DDGSLYVAGPDIYKMDVKTG-----------------KYTVALPLRNWNRKGYSAPDVLY 196
Query: 475 HIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNML 534
S + T+ ++ D A+AD + D + +
Sbjct: 197 FWPHQSPR--------HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248
Query: 535 FHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFN 594
T SP G ++ ++ Y VAF +
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGVLNRLAKY----DLKQRKLIKAANLDHTYYCVAFDKKGD 304
Query: 595 -VVSSGEDACIRVWRLAT 611
+ G + V+ T
Sbjct: 305 KLYLGGTFNDLAVFNPDT 322
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.6 bits (101), Expect = 5e-05
Identities = 23/181 (12%), Positives = 44/181 (24%), Gaps = 48/181 (26%)
Query: 56 GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115
E T+AR+ + + A+AD+ G EF L+ SP
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264
Query: 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175
+ + +D R+++
Sbjct: 265 NQIYGVLN---------------RLAKYDLKQRKLIK----------------------- 286
Query: 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235
+ C+ F G KL + +++ + EK+ G
Sbjct: 287 ----------AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
Query: 236 G 236
Sbjct: 337 S 337
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (131), Expect = 8e-09
Identities = 46/363 (12%), Positives = 113/363 (31%), Gaps = 33/363 (9%)
Query: 179 PFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSI 238
P + L R H V + + +I+ + D+ +YD + + + + S GH G +
Sbjct: 3 PQRTTL--RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLS---GHDGGV 56
Query: 239 YAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298
+A+ ++ G +++ S D++ +VW+I + ++ V + + +
Sbjct: 57 WALKYAHGGI-LVSGSTDRTVRVWDIKK-----GCCTHVFEGHNSTVRCLDIVEYKNIKY 110
Query: 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT---------------- 342
++T S + ++ P H + T +
Sbjct: 111 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 343 ---ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCE 399
++S SYD +I W + + RI E
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
Query: 400 GECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIA 459
+ + + L ++ + S + ++A
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 460 PDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519
+V G + +IY++ L + K I + + ++ A+ + + ++
Sbjct: 291 YVSDNILVSGSENQFNIYNLRSGKLVHA-NILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348
Query: 520 VWD 522
+
Sbjct: 349 LEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 2e-08
Identities = 34/240 (14%), Positives = 68/240 (28%), Gaps = 14/240 (5%)
Query: 23 LISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS 82
L + D + V + P V H V N S D +
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 83 VRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD 142
V +LSG D + + C + +R + ++G +
Sbjct: 185 VWDVAQMK------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238
Query: 143 FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDG 202
GH+ V A + + H ++ I
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDANDYSRKFSYHHTNLSAITTFYVS 293
Query: 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVW 262
++ S+ + IY+ +SG+ + ++ I++V++ V V D + +
Sbjct: 294 DNILVSGSENQFNIYNLRSGKLVH--ANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 4e-07
Identities = 36/351 (10%), Positives = 84/351 (23%), Gaps = 31/351 (8%)
Query: 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292
GH S+ + V+T + DK +V+ D + + S V +
Sbjct: 10 GHMTSVIT-CLQFEDNYVITGADDKMIRVY----DSINKKFLLQL-SGHDGGVWAL---K 60
Query: 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAI 352
L++ S + ++ + + + + I++ S D +
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 353 IKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKV-------------------- 392
W S + EE + G
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180
Query: 393 WRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT 452
+ + + +I G S +S + ++
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240
Query: 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASA 512
+ H + + ++ S
Sbjct: 241 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG 300
Query: 513 DGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII 563
N+ +++ S ++ N+L +I + + T+VA D +
Sbjct: 301 SENQ-FNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 6e-07
Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 486 EEMVLEKHRGA-ITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLA 544
+ L H + IT +Q+ + + ++ V+D ++K+ L + H + L
Sbjct: 4 QRTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALK 60
Query: 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACI 604
++ +V+ + T + + N+ + + V + + +V+ D +
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 605 RVWRLATE 612
VW+L E
Sbjct: 121 HVWKLPKE 128
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 3e-05
Identities = 17/140 (12%), Positives = 47/140 (33%), Gaps = 2/140 (1%)
Query: 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGN 515
+ + + I G + + +Y + L H G + ++Y+ + + +
Sbjct: 17 TCLQFEDNYVITGADDKMIRVYDS--INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 74
Query: 516 REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRIT 575
+ + + T R + + + TGS D + ++++ K +S
Sbjct: 75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134
Query: 576 IKNAHLGGVYGVAFMDDFNV 595
+ V+ + + V
Sbjct: 135 GEEHDYPLVFHTPEENPYFV 154
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 5e-05
Identities = 19/160 (11%), Positives = 47/160 (29%), Gaps = 6/160 (3%)
Query: 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDL 108
P G +T ++ + +R++ + N L + G + L
Sbjct: 3 PQRTTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLL-QLSGHDGGVWAL 59
Query: 109 QWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168
+++ G+ + D ++ + T +S + I T
Sbjct: 60 KYAHGGILVSGSTD---RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 169 DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208
D ++ ++ P H E ++ + + V
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 9e-05
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 51 HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQW 110
+F H + + + + S I+ +G ++ + +I + +
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNF 332
Query: 111 SPDGLRIVACGDGKGKSFVRAF 132
L DG+ + F
Sbjct: 333 KGKTLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 9e-05
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 2/102 (1%)
Query: 508 MFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567
+ + + + HT + S ++ +GS + IY +
Sbjct: 253 DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 311
Query: 568 KPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRL 609
I ++ V F V + +D + L
Sbjct: 312 SGKLVHANIL-KDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 352
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.6 bits (130), Expect = 2e-08
Identities = 18/255 (7%), Positives = 51/255 (20%), Gaps = 40/255 (15%)
Query: 49 PLHVEFYGEHGYPVTVARYSPNGEWIASADVS-GSVRIWGTHNGFVLKNEFKVLSGRIDD 107
L G V + + + + + L+
Sbjct: 113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ-----LTKSASC 167
Query: 108 LQWSPDGLR--IVACGDGKGKSFV--RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRI 163
P + + A + + +
Sbjct: 168 FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227
Query: 164 ATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGL-------- 215
A + K + + + F G ++++ + G+
Sbjct: 228 AVASSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286
Query: 216 -----------IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA--DKSAKVW 262
G+ G S + A+ + DG ++ + ++
Sbjct: 287 RSCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 263 EILEDGSGGRVIKTF 277
D + + +
Sbjct: 343 ----DAASDQDQSSV 353
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.3 bits (98), Expect = 1e-04
Identities = 34/361 (9%), Positives = 85/361 (23%), Gaps = 41/361 (11%)
Query: 157 PTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDG----------SKLI 206
R + F++ G ++
Sbjct: 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSA 90
Query: 207 SVSSDRKGLIYDGKSGEKIGEFSSEDGHH----GSIYAVSWSPDGKKVLTVSADKSAKVW 262
++D + I + D ++ + +L SA
Sbjct: 91 KGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAG 150
Query: 263 EILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322
+ S ++ K+ + + L L +
Sbjct: 151 LSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA---------------A 195
Query: 323 FSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEV 382
+ + T + ++Y G ++ + + + E
Sbjct: 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESG 255
Query: 383 IFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK 442
F + +++ + + I + + S ++ + V+ G +
Sbjct: 256 RKADNFRSAGFQMVAKL---KNTDGIMILTVEHSRSCLAAAENTSSVTASVG-------Q 305
Query: 443 VMSKIDLGFTVTACAIAPDGSEAIV--GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVI 500
I G A A DG+ L IY + + + L+K +++V
Sbjct: 306 TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365
Query: 501 Q 501
Sbjct: 366 N 366
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 4e-08
Identities = 49/411 (11%), Positives = 112/411 (27%), Gaps = 79/411 (19%)
Query: 225 IGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNA 284
I ++ H I++VS ++ S D KVW+
Sbjct: 4 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDN----------------KLLD 45
Query: 285 VEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTIL 344
E+ H + HV + + +
Sbjct: 46 NENPKDKSYSHFVHKSGLH----------------------HVDVLQAIERDAFELCLVA 83
Query: 345 SSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGD 404
++S+ G ++ + D K + +++ + + W +
Sbjct: 84 TTSFSGDLLFYRITRE---------DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134
Query: 405 AEHIDVGSQP----LDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAP 460
H V + + E ++ L V S + T+ I+
Sbjct: 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 194
Query: 461 DGSEAIVGGQNGKLHI----YSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNR 516
G A G NG + I + + + +I +++SP S+ A A +
Sbjct: 195 RGLIA-TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253
Query: 517 EAIVWDR---------------VSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCV 561
H++ + L+++ S + + D +
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313
Query: 562 IIYEIGKPASSRITIKNAHLGGVY----GVAFMDDFNVVSSGEDACIRVWR 608
+++ RIT N H + +A + + ++ ++ +
Sbjct: 314 RFWDVKT--KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 37/322 (11%), Positives = 81/322 (25%), Gaps = 46/322 (14%)
Query: 5 HLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTV 64
H+ A + + + + + L + +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 65 ARYSPNGE-----WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQ---------- 109
++ + + + + DV G+ IW H N + +LQ
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 110 -------WSPDGLRIVACGDGKGK-SFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPF 161
S GL +G + S + ++ + +
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244
Query: 162 RIATCGEDFLVNFY----------------EGPPFKFKLSHREHSNFVNCIRFSPDGSKL 205
+A + + L HS++V + F+ G L
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304
Query: 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY----AVSWSPDGKKVLTVSADKSAKV 261
S D K +D K+ E+I + H I ++ G + +
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTL---NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 361
Query: 262 WEILEDGSGGRVIKTFASSTSN 283
+ G G + ++ +
Sbjct: 362 KKGWRSGMGADLNESLCCVCLD 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 28/163 (17%)
Query: 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYE------GPPFKFKLSHREHSN 191
T H + S + +C D + ++ P SH H +
Sbjct: 5 ATANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 192 FVNCIRF-------SPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE-------DGHHGS 237
++ + + + + + S L Y ++ + E D S
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
Query: 238 IYAVSWSPDG-----KKVLTVSADKSAKVWEILEDGSGGRVIK 275
+A+ W +++ + +W+ +
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 42/382 (10%), Positives = 93/382 (24%), Gaps = 73/382 (19%)
Query: 68 SPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRI-----------DDLQWSPDGLR 116
S + S G +++W + K S + ++ L
Sbjct: 21 SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80
Query: 117 IVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPF--------------R 162
+VA G + + +L + K + R
Sbjct: 81 LVATTSFSGD--LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 138
Query: 163 IATCGEDFLVNFYEGPPFKFK------------------LSHREHSNFVNCIRFSPDGSK 204
+ ++ PF + S S F + S G
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 197
Query: 205 LISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKV 261
+ + ++ + + + S + SI +V +SP G + S
Sbjct: 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257
Query: 262 WEILEDGSGGRVIKTFASSTSNAVEDMLVG---------CLWQNDHLITVSLGGIISIFS 312
+ E G R+ + S+ + L + G + +
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
Query: 313 ASNLDKAPLSFSGHVKNVSTL-TALKISQQ-TILSSSYDGAIIKWIRGVGYSSKLEKKYD 370
+ + + H ++ L + + L+ + +G
Sbjct: 318 VKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW----------- 365
Query: 371 ARIKCLAAVEEVIFTAGFDNKV 392
R A + E + D +
Sbjct: 366 -RSGMGADLNESLCCVCLDRSI 386
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.002
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 536 HTARINCLAWSPSSTMVATGSIDTCVIIYEI--GKPASSRITIKN--AHLGGVYGVAFMD 591
H A I ++ S + S D + +++ + + + H G++ V +
Sbjct: 13 HDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 592 DFN--------VVSSGEDACIRVWRLAT 611
V ++ + +R+
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITR 98
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 4e-08
Identities = 30/256 (11%), Positives = 63/256 (24%), Gaps = 23/256 (8%)
Query: 10 YACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSP 69
+ A S + + + + + + + Y + L E +T+ ++
Sbjct: 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144
Query: 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129
+G + V K + + PD L + + G
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVE----DKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200
Query: 130 R--AFMWDSGT--------TVGDFDGHSRRVLSCEFKPTRP--FRIATCGEDFLVNFYEG 177
D + D + + E + F A
Sbjct: 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYN 260
Query: 178 PPFKFKLSHRE------HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS-S 230
F L + + S DGS + + YD ++ EK G+
Sbjct: 261 VLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320
Query: 231 EDGHHGSIYAVSWSPD 246
+ ++ D
Sbjct: 321 GNASMSLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 34/323 (10%), Positives = 84/323 (26%), Gaps = 22/323 (6%)
Query: 188 EHSNFVNCIRFSPDGSKLISVSSDRKGL-IYDGKSGEKIGEFSSEDGHH--GSIYAVSWS 244
+ +P G + + + L D +GE +G S++ + S
Sbjct: 31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90
Query: 245 PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304
PDGK + + ++ + + +A + ++
Sbjct: 91 PDGKTLAIYESPVRLELTHFEVQPTRVALY--------DAETLSRRKAFEAPRQITMLAW 142
Query: 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSK 364
+ + + + + I S + + V +
Sbjct: 143 ---------ARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193
Query: 365 LEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSP 424
+ + + + L GE E + ++ +
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253
Query: 425 ELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484
L+ + ++ L + + ++ DGS +GG G L Y
Sbjct: 254 RAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
Query: 485 TEEMVL--EKHRGAITVIQYSPD 505
++ L +V ++ D
Sbjct: 314 KGQVDLPGNASMSLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 28/284 (9%), Positives = 53/284 (18%), Gaps = 36/284 (12%)
Query: 19 GRGILISG---------NPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSP 69
GR + + T L S + +
Sbjct: 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104
Query: 70 NGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129
+ E +I L W+ DG ++ G
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGLGRDLHVMDP 161
Query: 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK------ 183
A + ++ + + F + P
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221
Query: 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGL----------IYDGKSGEKIGEFSSEDG 233
L+ + + S + + +D + I
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV----P 277
Query: 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTF 277
S Y+V+ S DG V A + D
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAY----DAETLEKKGQV 317
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 4e-06
Identities = 33/325 (10%), Positives = 90/325 (27%), Gaps = 16/325 (4%)
Query: 205 LISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWE 263
+++ + K ++ D + + D + +P G+ + +S
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIAD-AGPTPMVPMVAPGGRIAYATVNKSESLVKI- 61
Query: 264 ILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSF 323
D G + ST L G D T+++ ++ + P
Sbjct: 62 ---DLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRV 117
Query: 324 SGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVI 383
+ + + + + I ++ + G+G + + ++
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDG-SKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 384 FTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKV 443
V V G ++ ++ L+ + L++ ++
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL-----TMDLETGEM 231
Query: 444 MSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYS 503
+ V + A + ++ G L + + N + + + + S
Sbjct: 232 AMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV---PLPHSYYSVNVS 288
Query: 504 PDVSMFASADGNREAIVWDRVSKEV 528
D S + +D + E
Sbjct: 289 TDGSTVWLGGALGDLAAYDAETLEK 313
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 32/308 (10%), Positives = 72/308 (23%), Gaps = 27/308 (8%)
Query: 72 EWIASADVSGSVRIWGTHNGFVLKNEFKVLS--GRIDDLQWSPDGLRIVACGDGKGKSFV 129
++I + + + T V K + +P G A + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDK-VITIADAGPTPMVPMVAPGGRIAYATVNKSES--L 58
Query: 130 RAFMWDSGTTVGDFDGHS-----RRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFK- 183
+G T+G D + + + P L +
Sbjct: 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118
Query: 184 ---------LSHREHSNFVNCIRFSPDGSKLISVSSDRK-GLIYDGKSGEKIGEFSSEDG 233
E + + ++ DGSKL + D G E S E
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178
Query: 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEI--LEDGSGGRVIKTFASSTSNAVEDMLVG 291
+ ++ + ++ +I + + + T T +
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238
Query: 292 CLWQNDHLITVSLGGIISIFSA--SNLDKAPLSFSGHVKNVSTLTALKISQ--QTILSSS 347
+ D + V + ++ +S T+
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG 298
Query: 348 YDGAIIKW 355
G + +
Sbjct: 299 ALGDLAAY 306
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 52.3 bits (124), Expect = 1e-07
Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 7/150 (4%)
Query: 407 HIDVGSQPLDLSLALSSPELALVS-TESG---VILLDSLKVMSKIDLGFTVTACAIAPDG 462
+ +P L P L V+ ++G ++ DS K++ ID G+ V ++ G
Sbjct: 14 LVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASG 73
Query: 463 SEAIVGGQNGKLHIYSISGNTLT---EEMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519
+V G++ ++ + + T E + + R + + +
Sbjct: 74 RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF 133
Query: 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSS 549
+ ++ + P
Sbjct: 134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.9 bits (105), Expect = 2e-05
Identities = 37/364 (10%), Positives = 99/364 (27%), Gaps = 43/364 (11%)
Query: 188 EHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE--KIGEFSSEDGHHGSIYAVSWSP 245
+ V+ R S G L+ + D + + D + E K+ E +
Sbjct: 59 DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118
Query: 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG 305
+ + + + DG + ++ + +
Sbjct: 119 EDRYTIAGAYWPPQFAI---MDGETLEPKQIVSTRGMTVDTQT----YHPEPRVAAIIAS 171
Query: 306 GIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365
F + + +G V V+ ++ +I ++ G+ S
Sbjct: 172 HEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSI-------GAAPFLADGGWDSSH 218
Query: 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPE 425
A + + V A + P+ + L
Sbjct: 219 RYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS 277
Query: 426 LALVSTESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIV-------GGQNGKLHIY 477
++L+ T+ + K ++++ G P S V + + ++
Sbjct: 278 ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337
Query: 478 SISGNTLTEEMV-------LEKHRGAITVIQYSPD-----VSMFASADGNREAIVWDRVS 525
+ +++ L + + +Y+ S++ + + +V D +
Sbjct: 338 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 397
Query: 526 KEVK 529
++K
Sbjct: 398 LKLK 401
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 10/102 (9%)
Query: 198 FSPDGSKLISV--SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255
D L SV + + DG S + + + H S G+ +L +
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHI----SRMSASGRYLLVIGR 81
Query: 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297
D + D K + +
Sbjct: 82 DARIDMI----DLWAKEPTKVAEIKIGIEARSVESSKFKGYE 119
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.3 bits (121), Expect = 2e-07
Identities = 31/232 (13%), Positives = 67/232 (28%), Gaps = 41/232 (17%)
Query: 49 PLHVEFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKNEFKVLSGRIDD 107
+ ++ P T + +G A G+ I T I+
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE------FLINH 199
Query: 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCG 167
+S R+V GK + + + + ++P ++A
Sbjct: 200 PAYSQKAGRLVWPTYT-GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY-- 256
Query: 168 EDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE 227
H + ++ R ++ D K+GE++ +
Sbjct: 257 ---------------------HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK 295
Query: 228 FSSEDGHHGSIYAVSWSPDGKKVLTVSA--DKSAKVWEILEDGSGGRVIKTF 277
F I +++ S D K +L + DK+ + D G +++
Sbjct: 296 FE----MGHEIDSINVSQDEKPLLYALSTGDKTLYIH----DAESGEELRSV 339
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 28/302 (9%), Positives = 59/302 (19%), Gaps = 43/302 (14%)
Query: 61 PVTVARYSPNGEWI-----ASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115
P + +P+ + A + G V+ + G + + + DG
Sbjct: 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGFLPNPVVADDGS 59
Query: 116 RIVACGDGKGKSF-------VRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGE 168
I + V F + D + P
Sbjct: 60 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119
Query: 169 DFLVNFYEGPPFKFKL---------------SHREHSNFVNCIRFSPDGSKLISVSSDRK 213
F P H + DGS
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF---- 175
Query: 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273
+ E I ++S +++ + ++
Sbjct: 176 ---GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL-----SSGD 227
Query: 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSL-GGIISIFSASNLDKAPLSFSGHVKNVST 332
K + + + G + I + + + S V +
Sbjct: 228 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 287
Query: 333 LT 334
T
Sbjct: 288 KT 289
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 33/353 (9%), Positives = 81/353 (22%), Gaps = 52/353 (14%)
Query: 198 FSPDGSKLISVSSDRKGL-----IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252
+PD ++ + DG++G IG G + + DG +
Sbjct: 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-----GFLPNPVVADDGSFIAH 63
Query: 253 VSA----------DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV 302
S +V++ + + A + L+
Sbjct: 64 ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 123
Query: 303 SLGGIISIFSASNLDKAPLSF-------SGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355
++ KA T + +
Sbjct: 124 QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183
Query: 356 IRGVGYSSKLEKKYDA--------RIKCLAAVEEVIFTAGFDNKVWRVPLCEGE------ 401
+ + E + R+ ++ +P E
Sbjct: 184 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243
Query: 402 ---CGDAEHIDVGSQPLDLSLALSSPELALVSTESG----VILLDSLKVMSKIDLGFTVT 454
+ LD L + V+ + + ++K ++G +
Sbjct: 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID 303
Query: 455 ACAIAPDGSEAIV--GGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD 505
+ ++ D + + L+I+ + E + + VI +
Sbjct: 304 SINVSQDEKPLLYALSTGDKTLYIHDAE--SGEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.5 bits (85), Expect = 0.004
Identities = 41/379 (10%), Positives = 80/379 (21%), Gaps = 60/379 (15%)
Query: 111 SPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHS----------RRVLSCEFKPT 158
+PD R+ + + F+ D +G +G DG + +
Sbjct: 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFS 69
Query: 159 RPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFV----NCIRFSPDGSKL--ISVSSDR 212
R R + + P V +PDG L S
Sbjct: 70 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129
Query: 213 KGLIYDGKSGEKIGEFSSEDG----HHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDG 268
+ D + D DG + E
Sbjct: 130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF 189
Query: 269 SGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK 328
+ S L+ + G I S+ D L +
Sbjct: 190 HPEDEFLINHPAYSQK-----------AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238
Query: 329 NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGF 388
+ ++ I +
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRD--------------------EWRHKTA 278
Query: 389 DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESG----VILLDSLKVM 444
V + GE ++G + ++++ L + + +S + +
Sbjct: 279 SRFVVVLDAKTGER--LAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336
Query: 445 SKID-LGFTVTACAIAPDG 462
++ LG A G
Sbjct: 337 RSVNQLGHGPQVITTADMG 355
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (120), Expect = 3e-07
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 11/156 (7%)
Query: 407 HIDVGSQPLDLSLALSSPELALVSTESG-----VILLDSLKVMSKIDLGFTVTACAIAPD 461
H+ +P L V T +I + ++ + +D G+ V ++
Sbjct: 14 HVAPEDRPTQQMNDWDLENLFSV-TLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSAS 72
Query: 462 GSEAIVGGQNGKLHIYSISGNTLTEE---MVLEKHRGAITVIQYSPDVS-MFASADGNRE 517
G V G++GK+++ + T + + R T + A A +
Sbjct: 73 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 132
Query: 518 AIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVA 553
++ D + E + + P + A
Sbjct: 133 YVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAA 167
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 48.3 bits (114), Expect = 2e-06
Identities = 26/216 (12%), Positives = 47/216 (21%), Gaps = 17/216 (7%)
Query: 55 YGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDG 114
Y + E+I + +G + + + LK + D
Sbjct: 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 218
Query: 115 -LRIVACGDGKGKSFVRAFMWDSGTT--VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171
I A + G H R + P + D
Sbjct: 219 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278
Query: 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE 231
V P H +++ + + G L + + +
Sbjct: 279 VALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHP----------NSQYLYVDAT 324
Query: 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILED 267
I D K + +D K I E
Sbjct: 325 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW 360
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (103), Expect = 4e-05
Identities = 47/373 (12%), Positives = 104/373 (27%), Gaps = 47/373 (12%)
Query: 184 LSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE--KIGEFSSEDGHHGSIYAV 241
+ + V+ R S G L + D K + D E + E +
Sbjct: 55 KTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114
Query: 242 SWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLIT 301
+ K + A + + + + I++ T + E I
Sbjct: 115 MEGWEDKYAI-AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH----PEPRVAAIL 169
Query: 302 VSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGY 361
S I + K + + + L LK ++ + +DG + R
Sbjct: 170 ASHYRPEFIVNVKETGKI------LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT 223
Query: 362 SSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLAL 421
++ K + + T G R + P+ + +
Sbjct: 224 AANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF---------VHPTFGPVWATSHM 274
Query: 422 SSPELALVSTESGVILLDSLKVMSKID-LGFTVTACAIAPDGSEAIV---GGQNGKLH-- 475
+AL+ T+ ++ K++ LG P+ V ++
Sbjct: 275 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS 334
Query: 476 IYSISGNTLT--------------EEMVLEKHRGAITVIQYSPD-----VSMFASADGNR 516
+ +T E + + + + +++ D S++ D
Sbjct: 335 VAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQES 394
Query: 517 EAIVWDRVSKEVK 529
+V D + E+K
Sbjct: 395 ALVVVDDKTLELK 407
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (100), Expect = 9e-05
Identities = 37/225 (16%), Positives = 60/225 (26%), Gaps = 18/225 (8%)
Query: 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNG-FVLKNEFKVLSGRID---DLQWSP 112
+ GY V ++R S +G ++ G V + E K+ S
Sbjct: 59 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW 118
Query: 113 DGLRIVACG---------DGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRI 163
+ +A DG+ + T RV + RP I
Sbjct: 119 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178
Query: 164 ATCGED--FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221
E L+ Y K + F++ I+ ++ R L+
Sbjct: 179 VNVKETGKILLVDYTDLNNL-KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237
Query: 222 GEKIG--EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264
K+ E + H A P V S V I
Sbjct: 238 EGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALI 282
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (93), Expect = 6e-04
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 198 FSPDGSKLISV--SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255
D L SV + + DG + E + H S G+ + +
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHI----SRLSASGRYLFVIGR 81
Query: 256 DKSAKVWEI 264
D + ++
Sbjct: 82 DGKVNMIDL 90
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 31/220 (14%), Positives = 57/220 (25%), Gaps = 4/220 (1%)
Query: 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRID-DLQWSPDGL 115
P+ +SP+G +A R + +SPDG
Sbjct: 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS 95
Query: 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175
++ G + SG DG S F ++ + +
Sbjct: 96 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 155
Query: 176 EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHH 235
+ S DG ++ VSS+ + G
Sbjct: 156 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFL 215
Query: 236 GSIYAVSWSPDGKKVLTVSAD-KSAKVWEILEDGSGGRVI 274
S +P+G V+ S+ + + + DG +
Sbjct: 216 D--ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 253
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.3 bits (87), Expect = 0.002
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 226 GEFSSEDGHHGSIYAVSWSPDGKKVL-TVSADKSAKVWEILEDGSGGRVIKTFA 278
+ ++ ++ +PDGKKV +S + V D + + T A
Sbjct: 234 NKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVI----DTATNTITATMA 283
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.002
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 188 EHSNFVNCIRFSPDGSKLISVSSDRKGL-IYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD 246
+ V + SPD L + Y + F++E GS+ +S
Sbjct: 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93
Query: 247 GKKVLTVSADKSAKVW 262
G+ V S +
Sbjct: 94 GQFVFVGSYNAGNVSV 109
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.003
Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 28/197 (14%)
Query: 67 YSPNGEWIAS-----ADVSGSVRIWGTHNG--FVLKNEFKVLSGRIDDLQWSPDGLRIVA 119
+ P +WI+ + G+VR+W VL K+ S R + SPD +
Sbjct: 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALF 77
Query: 120 CGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP 179
+ + + ++ + + L + A G
Sbjct: 78 SYNVE-PIYQHSY--TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG--------- 125
Query: 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239
+ + E++ + + VS+ ++G+IY+G S ++ E+ +
Sbjct: 126 -QQLIFIFENNIYY---CAHVGKQAIRVVSTGKEGVIYNGLS-----DWLYEEEILKTHI 176
Query: 240 AVSWSPDGKKVLTVSAD 256
A WSPDG ++ + +
Sbjct: 177 AHWWSPDGTRLAYAAIN 193
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 612 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.98 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.92 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.89 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.8 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.78 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.75 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.66 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.53 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.53 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.46 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.45 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.4 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.38 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.36 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.34 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.34 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.3 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.28 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.25 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.18 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.17 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.14 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.11 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.02 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.95 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.74 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.54 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.52 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.47 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.35 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.23 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.2 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.19 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.18 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.09 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.06 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.99 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.94 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.82 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.77 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.72 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.7 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.68 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.67 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.63 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.47 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.01 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.87 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.71 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.18 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.58 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.46 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.34 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.81 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.72 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.57 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.96 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 92.5 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.13 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.6 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 87.93 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.28 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 84.58 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 82.47 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-49 Score=362.19 Aligned_cols=304 Identities=38% Similarity=0.753 Sum_probs=277.6
Q ss_pred eeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCe
Q 007229 3 EVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGS 82 (612)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~ 82 (612)
+++...+|++.|.+.|+.+..++++|+|+.||++.++.|.+||++++...+.+.+|.+.|++++|+|||++||+|+.||+
T Consensus 2 ~~~~~~~~~~~p~~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~ 81 (311)
T d1nr0a1 2 EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81 (311)
T ss_dssp CCEEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CccccccccCCCCCCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCce
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCE
Q 007229 83 VRIWGTHNGFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPF 161 (612)
Q Consensus 83 i~iwd~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (612)
|+|||+.+++. ....+..|...|.+++|+|++++|++++.+... .+++|+|++++....+.+|...|.+++|+|++++
T Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~-~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 160 (311)
T d1nr0a1 82 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160 (311)
T ss_dssp EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred EeeeeeeccccccccccccccCccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccee
Confidence 99999998865 345678899999999999999999999876543 5789999999999999999999999999999998
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec----cCCcccc
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS----EDGHHGS 237 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~ 237 (612)
++++|+.|+.|++||+++++....+.+|..+|.+++|+|+++++++++.|+.+++||+.+++....+.. ..+|...
T Consensus 161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~ 240 (311)
T d1nr0a1 161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 240 (311)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred eecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999888776632 2368899
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEc
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSA 313 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 313 (612)
|.+++|+|++++|++++.||.|++||+ .++++++.+..... ......++.|.++.+++++.+|.|++||+
T Consensus 241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~----~t~~~~~~l~~~~~--~~~~~~~~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 241 VFGLTWSPDGTKIASASADKTIKIWNV----ATLKVEKTIPVGTR--IEDQQLGIIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEET----TTTEEEEEEECCSS--GGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEEC----CCCcEEEEEECCCC--ccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence 999999999999999999999999999 89999998876542 23445678888999999999999999995
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-44 Score=330.75 Aligned_cols=315 Identities=18% Similarity=0.312 Sum_probs=268.2
Q ss_pred EeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCC
Q 007229 44 RYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 44 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
|... +.....|.||.+.|++++|+|++++||||+.||+|+|||+.+++ +...+.+|...|.+++|+|++.+++++..+
T Consensus 3 w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~ 80 (317)
T d1vyhc1 3 WIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSAD 80 (317)
T ss_dssp CCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCC-CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-EEEEEeCCCCcEEEEeeecccccccccccc
Confidence 4333 34456799999999999999999999999999999999999988 566888999999999999999999999988
Q ss_pred CCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC
Q 007229 124 KGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS 203 (612)
Q Consensus 124 ~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 203 (612)
.. +..+.....+....+.+|...+.++.|+|+++ .+++++.|+.+++||+++++....+.+|...+.+++|+|+++
T Consensus 81 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (317)
T d1vyhc1 81 MT---IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 156 (317)
T ss_dssp SC---CCEEETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred cc---cccccccccccccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC
Confidence 73 46667778888888999999999999999999 599999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcc
Q 007229 204 KLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 283 (612)
+|++++.|+.+++|+..+++....+ ..|...+.+++|+|++.........+.
T Consensus 157 ~l~~~~~d~~v~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~------------------------- 208 (317)
T d1vyhc1 157 LIASCSNDQTVRVWVVATKECKAEL---REHRHVVECISWAPESSYSSISEATGS------------------------- 208 (317)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECCSCGGGGGGGCCSC-------------------------
T ss_pred EEEEEeCCCeEEEEeeccceeeEEE---ecCCCCceEEEEeeccccceeeccccc-------------------------
Confidence 9999999999999999999988877 377888888888775432211100000
Q ss_pred ccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 284 AVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
T Consensus 209 -------------------------------------------------------------------------------- 208 (317)
T d1vyhc1 209 -------------------------------------------------------------------------------- 208 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccc
Q 007229 364 KLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKV 443 (612)
Q Consensus 364 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (612)
T Consensus 209 -------------------------------------------------------------------------------- 208 (317)
T d1vyhc1 209 -------------------------------------------------------------------------------- 208 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 444 MSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 444 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
.......++.++++++.|+.|++|++.+++. ...+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 209 ----------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 276 (317)
T d1vyhc1 209 ----------ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 276 (317)
T ss_dssp ----------C-------CCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred ----------eeeeeccCCceeEeccCCCEEEEEECCCCcE--EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 0011223455677788888888888887776 6677889999999999999999999999999999999
Q ss_pred CCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 524 VSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 524 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
.+++.+ ..+.+|..+|++++|+|++++|++|+.||+|+|||
T Consensus 277 ~~~~~~-~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 277 KNKRCM-KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp TTSCCC-EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999886 56788999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-43 Score=325.03 Aligned_cols=312 Identities=13% Similarity=0.180 Sum_probs=257.6
Q ss_pred EEEEccCCCEEEEecC-CEEEEEeCC---CCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce----e
Q 007229 23 LISGNPKTDTILYCNG-RSVLIRYLD---KPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV----L 94 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~~-~~i~i~~~~---~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~----~ 94 (612)
++..++||+....... ..+ + +.. ..+.+..+ +|...|+|++|||+|++||+|+ ||.|+|||+.+... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~-~~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~ 89 (337)
T d1gxra_ 14 SFHVTADGQMQPVPFPPDAL-I-GPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89 (337)
T ss_dssp EEEECSSSCEEECCCCTTSS-S-STTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE
T ss_pred cccCCCCCCEEeeccCCcce-e-cCCCCCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeE
Confidence 4667777776655542 221 1 111 22334444 7999999999999999999997 89999999987643 2
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
......|.+.|.+++|+||+++|++++.++ .+++|+.+ +.+....+..|...+.+++|+|++. ++++++.|+.|
T Consensus 90 ~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i 165 (337)
T d1gxra_ 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNI 165 (337)
T ss_dssp EEECSCTTSBEEEEEECTTSSEEEEEESSS---EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred EeeecCCCCcEEEEEEcCCCCEEEEeeccc---ccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 223346888999999999999999999988 57777766 4456778889999999999999998 59999999999
Q ss_pred EEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 173 NFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 173 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
++|++.+++......+|...|.+++|+++++++++++.|+.+++||+++++.+..+ .+...|.+++|+|+++++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~ 241 (337)
T d1gxra_ 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccceeeccc----ccccceEEEEEcccccccce
Confidence 99999999999999999999999999999999999999999999999999998888 78899999999999999999
Q ss_pred EeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeE
Q 007229 253 VSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVST 332 (612)
Q Consensus 253 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ 332 (612)
++.|+.+++||+ ..++....
T Consensus 242 ~~~d~~i~i~d~----~~~~~~~~-------------------------------------------------------- 261 (337)
T d1gxra_ 242 GMESSNVEVLHV----NKPDKYQL-------------------------------------------------------- 261 (337)
T ss_dssp EETTSCEEEEET----TSSCEEEE--------------------------------------------------------
T ss_pred eccccccccccc----cccccccc--------------------------------------------------------
Confidence 999999999998 32221100
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCC
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGS 412 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 412 (612)
T Consensus 262 -------------------------------------------------------------------------------- 261 (337)
T d1gxra_ 262 -------------------------------------------------------------------------------- 261 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecc
Q 007229 413 QPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEK 492 (612)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~ 492 (612)
..+...|++++|+|++++|++++.||.|++||+.+++. .. ...
T Consensus 262 ----------------------------------~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~--~~-~~~ 304 (337)
T d1gxra_ 262 ----------------------------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IF-QSK 304 (337)
T ss_dssp ----------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EE-EEE
T ss_pred ----------------------------------cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE--EE-Ecc
Confidence 00122477889999999999999999999999998876 23 345
Q ss_pred ccCceEEEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 493 HRGAITVIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
|.+.|++++|+|++++|++++.||+|+|||+
T Consensus 305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 7889999999999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-42 Score=321.05 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=247.3
Q ss_pred CCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCcee-----eEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCC
Q 007229 16 TERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHV-----EFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHN 90 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~ 90 (612)
.|...|++++|||+|++||+|+++.|+|||+.++... ....+|.+.|.+++|+|||++||+++.||.|++||+..
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence 4778999999999999999999999999999865432 23457999999999999999999999999999999986
Q ss_pred Cce-eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 91 GFV-LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 91 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
... ....+..|...+..++|+|++.++++++.+. .+.+|...+++......+|...|.+++|++++. .+++++.|
T Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d 204 (337)
T d1gxra_ 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG---NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGGLD 204 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccc-cccccccc
Confidence 543 5567788999999999999999999999887 468888889999999999999999999999999 59999999
Q ss_pred CeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 170 FLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
+.+++||+++++.+..+ .|...|.+++|+|++++|++++.|+.+++||+++++..... .|...|.+++|+|++++
T Consensus 205 ~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~i~~v~~s~~g~~ 279 (337)
T d1gxra_ 205 NTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----LHESCVLSLKFAYCGKW 279 (337)
T ss_dssp SEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----CCSSCEEEEEECTTSSE
T ss_pred ccccccccccceeeccc-ccccceEEEEEcccccccceecccccccccccccccccccc----ccccccceEEECCCCCE
Confidence 99999999999887766 58889999999999999999999999999999998887665 89999999999999999
Q ss_pred EEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccc
Q 007229 250 VLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKN 329 (612)
Q Consensus 250 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 329 (612)
|++++.||.|++||+ .+++.+..+ .|...
T Consensus 280 l~s~s~Dg~i~iwd~----~~~~~~~~~-----------------------------------------------~~~~~ 308 (337)
T d1gxra_ 280 FVSTGKDNLLNAWRT----PYGASIFQS-----------------------------------------------KESSS 308 (337)
T ss_dssp EEEEETTSEEEEEET----TTCCEEEEE-----------------------------------------------ECSSC
T ss_pred EEEEeCCCeEEEEEC----CCCCEEEEc-----------------------------------------------cCCCC
Confidence 999999999999999 666655432 26678
Q ss_pred eeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 330 VSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 330 v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
|.+++|++ ++++|++|+.||.|++||+
T Consensus 309 v~~~~~s~-d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 309 VLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred EEEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 88888883 2789999999999999986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-42 Score=316.20 Aligned_cols=303 Identities=33% Similarity=0.587 Sum_probs=247.8
Q ss_pred eeEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEE--EeCCCC--ceeeEeccC-CCceEEEEECC--CCCEEE
Q 007229 3 EVHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLI--RYLDKP--LHVEFYGEH-GYPVTVARYSP--NGEWIA 75 (612)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i--~~~~~~--~~~~~~~~h-~~~v~~~~~s~--d~~~la 75 (612)
+++++.++|+.|.+.++.+++++|+|+|+.|+++++..+.+ |+.... .....+.+| ...|++++|+| +|++||
T Consensus 2 ~~~l~~~~p~~p~t~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~la 81 (325)
T d1pgua1 2 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC 81 (325)
T ss_dssp CEEEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred ccccccccCCcCCCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEE
Confidence 68999999999999999999999999999999998766555 444332 335567787 56899999998 678999
Q ss_pred EeeCcCeEEEeecCCCce-------eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCc
Q 007229 76 SADVSGSVRIWGTHNGFV-------LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSR 148 (612)
Q Consensus 76 s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~ 148 (612)
+|+.||+|+|||+..++. ....+..|.++|.+++|++++++|++++.+... .+.+|.|++++.+..+.+|..
T Consensus 82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~ 160 (325)
T d1pgua1 82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSGNSLGEVSGHSQ 160 (325)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTCCEEEECCSCSS
T ss_pred EEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccc-eEEEEeecccccceeeeeccc
Confidence 999999999999976543 222345688899999999999999988865443 688999999999999999999
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec---ccccccceEEEEECCC-CCeEEEEEcCCcEEEEecCCCCe
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS---HREHSNFVNCIRFSPD-GSKLISVSSDRKGLIYDGKSGEK 224 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~ 224 (612)
.|.+++|+|++++++++++.|+.+++||..+++.... ...|...|.+++|+|+ +++|++++.|+.|++||+++++.
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~ 240 (325)
T d1pgua1 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 240 (325)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE
T ss_pred ccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc
Confidence 9999999999987789999999999999998876655 3467788999999997 67899999999999999999999
Q ss_pred eeeeeccCCccccEEEEEEe---cCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEE
Q 007229 225 IGEFSSEDGHHGSIYAVSWS---PDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLIT 301 (612)
Q Consensus 225 ~~~~~~~~~~~~~v~~i~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (612)
+..+. +|..++..+.|+ |++++|++++.|+.|++||+ +++++++.+..+.
T Consensus 241 ~~~l~---~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~----~~~~~~~~~~~~~-------------------- 293 (325)
T d1pgua1 241 LKYIE---DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV----TTSKCVQKWTLDK-------------------- 293 (325)
T ss_dssp EEECC---BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET----TTTEEEEEEECCT--------------------
T ss_pred ccccc---ccccccccceeeeeccCCCEEEEEeCCCeEEEEEC----CCCCEEEEEEecC--------------------
Confidence 88883 666666555555 68999999999999999999 8888887765443
Q ss_pred EEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 302 VSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 302 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
+...+..+++....+..+++++.||.|++||+
T Consensus 294 ------------------------~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 294 ------------------------QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ------------------------TCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ------------------------CcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 22233333443222567888888888888875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-41 Score=321.81 Aligned_cols=344 Identities=19% Similarity=0.289 Sum_probs=258.0
Q ss_pred EEEecCCEEEEEeCCCCceee----EeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEE
Q 007229 33 ILYCNGRSVLIRYLDKPLHVE----FYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDL 108 (612)
Q Consensus 33 l~~~~~~~i~i~~~~~~~~~~----~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 108 (612)
+.-..++...+|+...++... ...+|++.|+|++|||||++||+|+ |+.|+|||+.+++. ...+..+.......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~-~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-VARLSDDSAANKDP 109 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE-EEEECC--------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce-Eeeecccccccccc
Confidence 334446788899977554322 2336999999999999999999997 89999999999874 33443332211110
Q ss_pred EECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccc
Q 007229 109 QWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHRE 188 (612)
Q Consensus 109 ~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 188 (612)
..........|...|++++|+|+++ +|++|+.||.|++||...++....+.+
T Consensus 110 ---------------------------~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~~~~~~~~ 161 (388)
T d1erja_ 110 ---------------------------ENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQG 161 (388)
T ss_dssp ------------------------------------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred ---------------------------cccccccccCCCCCEEEEEECCCCC-cceeccccccccccccccccccccccc
Confidence 0011123456889999999999999 599999999999999999999999999
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec-CCCEEEEEeCCCcEEEEEeecC
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP-DGKKVLTVSADKSAKVWEILED 267 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~iw~~~~~ 267 (612)
|...|.++++++++..+++++.++.+++||.++....... .+......+.+.+ ++++|++++.||.|++|+.
T Consensus 162 h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~--- 234 (388)
T d1erja_ 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS--- 234 (388)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECSTTCCEEEEEETTSCEEEEET---
T ss_pred ccccccccccccccccccccccceeeeeeecccccccccc----ccccccccccccCCCCCeEEEEcCCCeEEEeec---
Confidence 9999999999999999999999999999999988877776 3444455555655 8899999999999999999
Q ss_pred CCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEe
Q 007229 268 GSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSS 347 (612)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 347 (612)
.++.....+.... ....+|...|.++.|++ ++.++++++
T Consensus 235 -~~~~~~~~~~~~~---------------------------------------~~~~~h~~~v~~l~~s~-~~~~l~s~~ 273 (388)
T d1erja_ 235 -ETGFLVERLDSEN---------------------------------------ESGTGHKDSVYSVVFTR-DGQSVVSGS 273 (388)
T ss_dssp -TTCCEEEEEC---------------------------------------------CCCSSCEEEEEECT-TSSEEEEEE
T ss_pred -ccCccceeecccc---------------------------------------ccccCCCCCEEEEEECC-CCCEEEEEE
Confidence 7777666554321 33456889999999983 278999999
Q ss_pred cCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEE
Q 007229 348 YDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELA 427 (612)
Q Consensus 348 ~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (612)
.||.|++||+...............
T Consensus 274 ~d~~i~iwd~~~~~~~~~~~~~~~~------------------------------------------------------- 298 (388)
T d1erja_ 274 LDRSVKLWNLQNANNKSDSKTPNSG------------------------------------------------------- 298 (388)
T ss_dssp TTSEEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEeccCCcccccccccccc-------------------------------------------------------
Confidence 9999999998766543322100000
Q ss_pred EEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEE-----
Q 007229 428 LVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQY----- 502 (612)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~----- 502 (612)
........+...|.+++|+|++++|++|+.||.|++||+.+++. ...+.+|.+.|+++++
T Consensus 299 -------------~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~l~~H~~~V~~~~~~~~~~ 363 (388)
T d1erja_ 299 -------------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGSS 363 (388)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSCT
T ss_pred -------------ceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--EEEEeCCCCCEEEEEEecCcc
Confidence 00111122456799999999999999999999999999999887 6789999999999975
Q ss_pred -cCCCcEEEEEcCCCeEEEEecC
Q 007229 503 -SPDVSMFASADGNREAIVWDRV 524 (612)
Q Consensus 503 -s~~~~~l~~~~~d~~i~iwd~~ 524 (612)
+|++++||+|+.||+|+||+++
T Consensus 364 ~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 364 LGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCCCCCEEEEEeCCCEEEEEeee
Confidence 6789999999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-41 Score=312.36 Aligned_cols=289 Identities=21% Similarity=0.359 Sum_probs=246.1
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEE
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIY 217 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 217 (612)
.....|.+|.++|++++|+|+++ +|++|+.||+|++||+.+++.+.++.+|...|.+++|+|++.+++++..++.+.+|
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CccEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence 34567899999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCC
Q 007229 218 DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQND 297 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (612)
+....+....+ ..|...+.++.|+|+++.+++++.|+.+++||+ .+++.+..+.
T Consensus 87 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~------------------- 140 (317)
T d1vyhc1 87 DFQGFECIRTM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV----QTGYCVKTFT------------------- 140 (317)
T ss_dssp ETTSSCEEECC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEET----TTCCEEEEEE-------------------
T ss_pred ccccccccccc---ccccccceeeeccCCCceEEeeccCcceeEeec----ccceeeeEEc-------------------
Confidence 99888877776 488999999999999999999999999999998 5444332221
Q ss_pred EEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEE
Q 007229 298 HLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLA 377 (612)
Q Consensus 298 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~ 377 (612)
+|..
T Consensus 141 ---------------------------~~~~------------------------------------------------- 144 (317)
T d1vyhc1 141 ---------------------------GHRE------------------------------------------------- 144 (317)
T ss_dssp ---------------------------CCSS-------------------------------------------------
T ss_pred ---------------------------cCCC-------------------------------------------------
Confidence 1222
Q ss_pred eeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEE
Q 007229 378 AVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACA 457 (612)
Q Consensus 378 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 457 (612)
.+.+++
T Consensus 145 --------------------------------------------------------------------------~~~~~~ 150 (317)
T d1vyhc1 145 --------------------------------------------------------------------------WVRMVR 150 (317)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred --------------------------------------------------------------------------cceeee
Confidence 245566
Q ss_pred EccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC--------------------CcEEEEEcCCCe
Q 007229 458 IAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD--------------------VSMFASADGNRE 517 (612)
Q Consensus 458 ~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~d~~ 517 (612)
++|++++|++++.|+.|++|++.+++. ...+..|...+.+++|+|+ +.++++++.|+.
T Consensus 151 ~~~~~~~l~~~~~d~~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 228 (317)
T d1vyhc1 151 PNQDGTLIASCSNDQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228 (317)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred cccCCCEEEEEeCCCeEEEEeecccee--eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence 666677777777777777777666654 4555666666776666654 457899999999
Q ss_pred EEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEE
Q 007229 518 AIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVV 596 (612)
Q Consensus 518 i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~ 596 (612)
|++||+.+++.+ ..+.+|...|.+++|+|++++|++++.||.|++||+++ + +++..+.+|.++|++++|+ ++++|+
T Consensus 229 i~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~-~~~~~~~~h~~~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 229 IKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-K-RCMKTLNAHEHFVTSLDFHKTAPYVV 305 (317)
T ss_dssp EEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT-S-CCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred EEEEECCCCcEE-EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC-C-cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 999999999887 55777999999999999999999999999999999998 6 7889999999999999999 889999
Q ss_pred EccCCCeEEEEE
Q 007229 597 SSGEDACIRVWR 608 (612)
Q Consensus 597 s~~~d~~i~~w~ 608 (612)
+++.||+|++||
T Consensus 306 s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 TGSVDQTVKVWE 317 (317)
T ss_dssp EEETTSEEEEEC
T ss_pred EEeCCCeEEEeC
Confidence 999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-40 Score=310.51 Aligned_cols=346 Identities=17% Similarity=0.242 Sum_probs=253.6
Q ss_pred eeeeccCCceE-EEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 140 VGDFDGHSRRV-LSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 140 ~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
..+|++|...| +|++| +++ +|++|+.||+|++||+.+++++.++.+|.++|.+++|+|+ ++|++++.|+.|++|+
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred cEEECCcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 45688998875 66665 466 5999999999999999999999999999999999999986 5899999999999999
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCE
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
....+........ .+........+.++++++++++.|+.|++|++ ................
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~----~~~~~~~~~~~~~~~~-------------- 141 (355)
T d1nexb2 81 IKKGCCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL----PKESSVPDHGEEHDYP-------------- 141 (355)
T ss_dssp TTTTEEEEEECCC-SSCEEEEEEEEETTEEEEEEEETTSEEEEEEC----CC-----------CCC--------------
T ss_pred ccccccccccccc-cccccccccccccccceeeeecCCCcEEEEEc----cCCceeccccccceec--------------
Confidence 9988877666322 44455667778899999999999999999999 5554443322211000
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
..................|...+...... ++.++++..|+.+++||+.+++......
T Consensus 142 ---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~d~~i~~~d~~~~~~~~~~~----------- 198 (355)
T d1nexb2 142 ---------LVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVAQMKCLYILS----------- 198 (355)
T ss_dssp ---------EEESCTTTCTTEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEEC-----------
T ss_pred ---------cceeccccccceeeeeeeccccccccccc---cceeeeecccceeeeeecccccceeeee-----------
Confidence 00000011111112223344444333222 6777777777777777776654332211
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEE
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAI 458 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 458 (612)
.+...+.++.+
T Consensus 199 ---------------------------------------------------------------------~~~~~~~~~~~ 209 (355)
T d1nexb2 199 ---------------------------------------------------------------------GHTDRIYSTIY 209 (355)
T ss_dssp ---------------------------------------------------------------------CCSSCEEEEEE
T ss_pred ---------------------------------------------------------------------ccccccccccc
Confidence 02235778899
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccc
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTA 538 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 538 (612)
+|++.++++++.|+.|++||+.++.. ...+.+|...|.++++++ ++|++++.||.|++||+.+.... +..|..
T Consensus 210 ~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~ 282 (355)
T d1nexb2 210 DHERKRCISASMDTTIRIWDLENGEL--MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK---FSYHHT 282 (355)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTCCE--EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE---EEEECT
T ss_pred cccceeeecccccceEEeeecccccc--cccccccccccccccccc--ceeeeeeccccccccccccccee---cccccC
Confidence 99999999999999999999998877 678889999999999865 69999999999999999988764 334666
Q ss_pred ceeEE-EecCCCcEEEEeecCcEEEEEEccCCCccee-eeecccccCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 539 RINCL-AWSPSSTMVATGSIDTCVIIYEIGKPASSRI-TIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 539 ~i~~~-~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
.+.++ .+++++++|++| .|+.|++||+++ + +++ ..+.+|.++|.+++|+++..+++++.||++++|.++
T Consensus 283 ~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~t-g-~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 283 NLSAITTFYVSDNILVSG-SENQFNIYNLRS-G-KLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp TCCCCCEEEECSSEEEEE-ETTEEEEEETTT-C-CBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred CceEEEEEcCCCCEEEEE-eCCEEEEEECCC-C-CEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence 66665 456677766665 589999999998 5 454 467889999999999966778889999998877654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-40 Score=315.82 Aligned_cols=295 Identities=20% Similarity=0.295 Sum_probs=240.0
Q ss_pred ccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc------------------ccccceEEEEECCCCCeE
Q 007229 144 DGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR------------------EHSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 144 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------------------~~~~~v~~~~~s~~~~~l 205 (612)
.+|.+.|++++|+|+|+ +|++|+ |+.|++||+.+++.+..+. .|...|.+++|+|++++|
T Consensus 59 ~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 46999999999999999 488886 8999999999988766543 356679999999999999
Q ss_pred EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 285 (612)
++|+.||.|++||...++.+... .+|...|.++++++++..+++++.++.+++||. ..........
T Consensus 137 ~s~~~dg~v~i~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~----~~~~~~~~~~------- 202 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENRKIVMIL---QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL----RTGQCSLTLS------- 202 (388)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET----TTTEEEEEEE-------
T ss_pred eeccccccccccccccccccccc---ccccccccccccccccccccccccceeeeeeec----cccccccccc-------
Confidence 99999999999999999888877 489999999999999999999999999999998 5555443332
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
+......+.+.+.++.++++++.||.|++|+..++.....
T Consensus 203 ----------------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 242 (388)
T d1erja_ 203 ----------------------------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242 (388)
T ss_dssp ----------------------------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ----------------------------------------cccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee
Confidence 2233445556655688999999999999999887665433
Q ss_pred ceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccccee
Q 007229 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMS 445 (612)
Q Consensus 366 ~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (612)
... ....
T Consensus 243 ~~~-------------------------------------------------------------------------~~~~ 249 (388)
T d1erja_ 243 LDS-------------------------------------------------------------------------ENES 249 (388)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred ecc-------------------------------------------------------------------------cccc
Confidence 210 0000
Q ss_pred eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccc----------cceeeccccCceEEEEEcCCCcEEEEEcCC
Q 007229 446 KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT----------EEMVLEKHRGAITVIQYSPDVSMFASADGN 515 (612)
Q Consensus 446 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 515 (612)
...+...|++++|+|++++|++++.||.|++||+.++... .......|...|.+++|+|++++|++|+.|
T Consensus 250 ~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d 329 (388)
T d1erja_ 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329 (388)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred ccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC
Confidence 1124457999999999999999999999999999765431 133455688999999999999999999999
Q ss_pred CeEEEEecCCcceeeecccccccceeEEE------ecCCCcEEEEeecCcEEEEEEccC
Q 007229 516 REAIVWDRVSKEVKLNNMLFHTARINCLA------WSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 516 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~------~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
|.|++||+.+++++ ..+.+|.+.|++++ |+|++++||+|+.||+|+||++++
T Consensus 330 g~i~vwd~~~~~~~-~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 330 RGVLFWDKKSGNPL-LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp SEEEEEETTTCCEE-EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CEEEEEECCCCcEE-EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence 99999999999987 56788999999986 567999999999999999999864
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-40 Score=311.74 Aligned_cols=326 Identities=14% Similarity=0.144 Sum_probs=240.3
Q ss_pred CCceeEEEEccCCCEEEEec-CCEEEEEeCCCCc--eeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 18 RGRGILISGNPKTDTILYCN-GRSVLIRYLDKPL--HVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.+.|+|++|||||++||+++ ++.|+|||+++++ ++..+.+|.+.|++++|+|++++||+++.|++|+|||+.++...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 35699999999999999998 7899999998775 56778999999999999999999999999999999999877632
Q ss_pred -eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce----eeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 95 -KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT----VGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 95 -~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
...+..|...|.+++|+|++++|++++.++ .+++|.++.... ......|...|.+++|+|++. +|++|+.|
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D 162 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCD 162 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETT
T ss_pred cccccccccccccccccccccccceeecccC---cceeeeeeccccccccccccccccccccccccccccc-ceeccccC
Confidence 334567889999999999999999999888 578888885543 344567999999999999999 59999999
Q ss_pred CeEEEEeCCCC------------------eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeecc
Q 007229 170 FLVNFYEGPPF------------------KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSE 231 (612)
Q Consensus 170 ~~i~~wd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 231 (612)
++|++|+.... .......+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.
T Consensus 163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 240 (371)
T d1k8kc_ 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-- 240 (371)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--
T ss_pred cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee--
Confidence 99999996542 3444566788999999999999999999999999999999999988883
Q ss_pred CCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEE
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIF 311 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (612)
.|..+|.+++|+|++++|++| .|+.+++|..+ .......+................... .+. ..+......
T Consensus 241 -~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~ 311 (371)
T d1k8kc_ 241 -SETLPLLAVTFITESSLVAAG-HDCFPVLFTYD----SAAGKLSFGGRLDVPKQSSQRGLTARE-RFQ--NLDKKASSE 311 (371)
T ss_dssp -CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE----TTTTEEEECCCCCCC--------CHHH-HHH--HCCCCC---
T ss_pred -cccccceeeeecCCCCEEEEE-cCCceEEEEee----CCCceEEEeeeecCcccccccccccee-eEe--cccceeEEe
Confidence 788999999999999877755 57888888773 222211111110000000000000000 000 000000000
Q ss_pred EcCCCCCCceeecCcccceeEEEEEecC---CcEEEEEecCCcEEEEEcCCc
Q 007229 312 SASNLDKAPLSFSGHVKNVSTLTALKIS---QQTILSSSYDGAIIKWIRGVG 360 (612)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~ 360 (612)
. ...........|.+.|+++++.+.. ...+++++.||.|++||+++.
T Consensus 312 ~--~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 312 G--SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred c--cccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 0 0001112223599999999998422 246899999999999998653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-40 Score=301.77 Aligned_cols=294 Identities=25% Similarity=0.405 Sum_probs=229.3
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcE
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSA 259 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 259 (612)
|+..+.+.||..+|++++|+|++++|++|+.||+|++||+++++....+ ...|...|.+++|+|+++ +++++.|+.+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~h~~~v~~v~~~~~g~-~~~~~~d~~v 78 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIKTTSKGD-LFTVSWDDHL 78 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS--SCSCSSCEEEEEECTTSC-EEEEETTTEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cCCCCCcEEEEEeeccce-eecccceeeE
Confidence 4667789999999999999999999999999999999999999988877 347899999999999997 5566789999
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
++|+. ...... ........+...+..+++++.
T Consensus 79 ~~~~~----~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~s~~- 110 (299)
T d1nr0a2 79 KVVPA----GGSGVD-------------------------------------------SSKAVANKLSSQPLGLAVSAD- 110 (299)
T ss_dssp EEECS----SSSSSC-------------------------------------------TTSCCEEECSSCEEEEEECTT-
T ss_pred EEecc----CCcccc-------------------------------------------ccccccccccccccccccccc-
Confidence 99997 221110 001112235566777777741
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeee
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (612)
+..++ ++.++.+.+|+......
T Consensus 111 g~~~~-~~~~~~i~~~~~~~~~~--------------------------------------------------------- 132 (299)
T d1nr0a2 111 GDIAV-AACYKHIAIYSHGKLTE--------------------------------------------------------- 132 (299)
T ss_dssp SSCEE-EEESSEEEEEETTEEEE---------------------------------------------------------
T ss_pred ccccc-ccccccccccccccccc---------------------------------------------------------
Confidence 44444 44556788886432110
Q ss_pred cCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEE
Q 007229 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITV 499 (612)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~ 499 (612)
......+.+++|+|+++++++|+.||.|++||+++++.. ......|..+|++
T Consensus 133 ---------------------------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~ 184 (299)
T d1nr0a2 133 ---------------------------VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS-EVKTIVHPAEITS 184 (299)
T ss_dssp ---------------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE-EEEEEECSSCEEE
T ss_pred ---------------------------ccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 111234678999999999999999999999999887653 2344568899999
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEecCCcceee--ecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeee
Q 007229 500 IQYSPDVSMFASADGNREAIVWDRVSKEVKL--NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 577 (612)
++|+|++++|++++.|+.|++||+.++.... ..+.+|..+|++++|+|++++|++|+.|+.|++||++++........
T Consensus 185 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 264 (299)
T d1nr0a2 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264 (299)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEe
Confidence 9999999999999999999999998876542 34567899999999999999999999999999999987442334444
Q ss_pred cccc-cCeeeEEEecCceEEEccCCCeEEEEEec
Q 007229 578 NAHL-GGVYGVAFMDDFNVVSSGEDACIRVWRLA 610 (612)
Q Consensus 578 ~~h~-~~v~~~~~~~~~~l~s~~~d~~i~~w~~~ 610 (612)
..|. ..|..+.|.++++|++++.|+.|++||+.
T Consensus 265 ~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 4444 46666666688999999999999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-39 Score=300.82 Aligned_cols=291 Identities=15% Similarity=0.274 Sum_probs=252.5
Q ss_pred ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeE
Q 007229 50 LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129 (612)
Q Consensus 50 ~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i 129 (612)
+..++|.||.+.|++++|+|++++||||+.||+|+|||+.+++ ....+..|...|.+++|+|+++++++++.++ .+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---~i 121 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDN---IC 121 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEEECSCSCEEEEEECTTSSEEEEEETTC---CE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-eEEEEecccccEEeeEeeccceeeeeecccc---ee
Confidence 5567799999999999999999999999999999999999998 5567889999999999999999999999988 45
Q ss_pred EEEEecC----CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeE
Q 007229 130 RAFMWDS----GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKL 205 (612)
Q Consensus 130 ~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 205 (612)
.+|.+.. ......+.+|..........++. .+.....+.....+.............+...+....+.+.+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ecccccccccccccceeccccccccccccccccc--ccccccccccccccccccccccccccccceeEeeecccccccee
Confidence 6666653 34566778888888777776665 58888899999999999888888888888999999999999999
Q ss_pred EEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcccc
Q 007229 206 ISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAV 285 (612)
Q Consensus 206 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 285 (612)
++++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.||.+++|++ ........+...
T Consensus 200 ~~~~~d~~v~i~d~~~~~~~~~~---~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~----~~~~~~~~~~~~----- 267 (340)
T d1tbga_ 200 VSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATCRLFDL----RADQELMTYSHD----- 267 (340)
T ss_dssp EEEETTTEEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----TTTEEEEEECCT-----
T ss_pred EEeecCceEEEEECCCCcEEEEE---eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEee----cccccccccccc-----
Confidence 99999999999999999999888 489999999999999999999999999999998 433322211100
Q ss_pred ceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeee
Q 007229 286 EDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKL 365 (612)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 365 (612)
T Consensus 268 -------------------------------------------------------------------------------- 267 (340)
T d1tbga_ 268 -------------------------------------------------------------------------------- 267 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccccee
Q 007229 366 EKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMS 445 (612)
Q Consensus 366 ~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (612)
T Consensus 268 -------------------------------------------------------------------------------- 267 (340)
T d1tbga_ 268 -------------------------------------------------------------------------------- 267 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 446 KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 446 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
.+...+++++|+|++++|++|+.||.|++||+.+++. ...+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus 268 --~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 268 --NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 0112478899999999999999999999999998877 678899999999999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.2e-39 Score=300.97 Aligned_cols=294 Identities=18% Similarity=0.278 Sum_probs=244.1
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcE
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSA 259 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 259 (612)
.+..++++||.++|++++|+|++++|++|+.||+|++||+.+++.+..+ ..|..+|.+++|+|+++++++++.|+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE---ECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE---ecccccEEeeEeeccceeeeeeccccee
Confidence 3456678999999999999999999999999999999999999998888 3789999999999999999999999999
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
++|+.......... ...+.+|...........
T Consensus 122 ~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~-- 153 (340)
T d1tbga_ 122 SIYNLKTREGNVRV----------------------------------------------SRELAGHTGYLSCCRFLD-- 153 (340)
T ss_dssp EEEESSSSCSCCCE----------------------------------------------EEEECCCSSCEEEEEEEE--
T ss_pred eccccccccccccc----------------------------------------------ceeccccccccccccccc--
Confidence 99998221111111 123344555555444445
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeee
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (612)
...+.....+.....+............
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 181 (340)
T d1tbga_ 154 DNQIVTSSGDTTCALWDIETGQQTTTFT---------------------------------------------------- 181 (340)
T ss_dssp TTEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc----------------------------------------------------
Confidence 6777777778877777665443322111
Q ss_pred cCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEE
Q 007229 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITV 499 (612)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~ 499 (612)
.....+....+.+.+.++++|+.|+.|++||+.+++. ...+.+|..+|++
T Consensus 182 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~--~~~~~~h~~~i~~ 231 (340)
T d1tbga_ 182 ----------------------------GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC--RQTFTGHESDINA 231 (340)
T ss_dssp ----------------------------CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE--EEEECCCSSCEEE
T ss_pred ----------------------------ccceeEeeeccccccceeEEeecCceEEEEECCCCcE--EEEEeCCCCCeEE
Confidence 1223577888999999999999999999999998877 6778899999999
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEecCCcceeee-cccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeec
Q 007229 500 IQYSPDVSMFASADGNREAIVWDRVSKEVKLN-NMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 500 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
++|+|++++|++++.|+.|++||+........ ....+...|++++|+|++++|++|+.||.|++||+.+ + +++..+.
T Consensus 232 v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~-~~~~~~~ 309 (340)
T d1tbga_ 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK-A-DRAGVLA 309 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT-C-CEEEEEC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC-C-cEEEEEc
Confidence 99999999999999999999999998877532 2345677899999999999999999999999999998 6 7889999
Q ss_pred ccccCeeeEEEe-cCceEEEccCCCeEEEEE
Q 007229 579 AHLGGVYGVAFM-DDFNVVSSGEDACIRVWR 608 (612)
Q Consensus 579 ~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~ 608 (612)
+|.++|++++|+ ++.+|+||+.||.|++||
T Consensus 310 ~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999 889999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-39 Score=295.73 Aligned_cols=289 Identities=17% Similarity=0.114 Sum_probs=247.5
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS 136 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~ 136 (612)
.+.+.+.+++++|+|+.||.++ ++.|.+||+.+.. ....+.+|...|++++|+|+|++|++++.++ .+++|+...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~-~~~~~~~H~~~v~~~~~sp~g~~latg~~dg---~i~iwd~~~ 89 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT-DTEIYTEHSHQTTVAKTSPSGYYCASGDVHG---NVRIWDTTQ 89 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS-CCEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCc-eeEEEcCCCCCEEEEEEeCCCCeEeccccCc---eEeeeeeec
Confidence 3556777899999999999985 5679999999887 5567889999999999999999999999998 578888776
Q ss_pred Cce--eeeeccCCceEEEEEEcCCCCEEEEEeec--CCeEEEEeCCCCeeeecccccccceEEEEECCCCCe-EEEEEcC
Q 007229 137 GTT--VGDFDGHSRRVLSCEFKPTRPFRIATCGE--DFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSK-LISVSSD 211 (612)
Q Consensus 137 ~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d 211 (612)
++. ...+..|..+|.+++|+|++++ +++++. +..+++|++++++....+.+|...|.+++|+|++++ |++|+.|
T Consensus 90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~-l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d 168 (311)
T d1nr0a1 90 TTHILKTTIPVFSGPVKDISWDSESKR-IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168 (311)
T ss_dssp TTCCEEEEEECSSSCEEEEEECTTSCE-EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cccccccccccccCccccccccccccc-cccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 654 3568899999999999999995 777765 567999999999999999999999999999999985 7889999
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
+.|++||+++++....+ ..|..+|.+++|+|+++++++++.|+.+++||+ .++.....+....
T Consensus 169 ~~i~i~d~~~~~~~~~~---~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~----~~~~~~~~~~~~~---------- 231 (311)
T d1nr0a1 169 NTVAIFEGPPFKFKSTF---GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG----VDGTKTGVFEDDS---------- 231 (311)
T ss_dssp SCEEEEETTTBEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----TTCCEEEECBCTT----------
T ss_pred ccccccccccccccccc---ccccccccccccCcccccccccccccccccccc----ccccccccccccc----------
Confidence 99999999999888877 488999999999999999999999999999999 7777666554332
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceec--
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKY-- 369 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-- 369 (612)
....+|...|.+++|++ ++++|++|+.||.|++||+++++.......+
T Consensus 232 -----------------------------~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~ 281 (311)
T d1nr0a1 232 -----------------------------LKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281 (311)
T ss_dssp -----------------------------SSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred -----------------------------cccccccccccccccCC-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC
Confidence 33457999999999983 2789999999999999999999887765432
Q ss_pred -ccceEEEEeeccEEEEecCCCeEEEEecC
Q 007229 370 -DARIKCLAAVEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 370 -~~~i~~~~~~~~~l~~~~~~~~i~~~~~~ 398 (612)
...+.++.+.++.+++++.||.|++||.+
T Consensus 282 ~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 282 IEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp GGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred ccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 34566788889999999999999999963
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-39 Score=292.52 Aligned_cols=286 Identities=18% Similarity=0.184 Sum_probs=232.4
Q ss_pred CCCCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEec-cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCC
Q 007229 14 PSTERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNG 91 (612)
Q Consensus 14 ~~~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~ 91 (612)
.++|.+.|++++|+|||++|++++ |+.|++||+++++.++.+. +|...|++++|+|+|++++ ++.|+.+++|+....
T Consensus 8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~~d~~v~~~~~~~~ 86 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VSWDDHLKVVPAGGS 86 (299)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EETTTEEEEECSSSS
T ss_pred cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-ccceeeEEEeccCCc
Confidence 457899999999999999999998 8999999999999888774 7999999999999998655 557899999998765
Q ss_pred ce--eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecC
Q 007229 92 FV--LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED 169 (612)
Q Consensus 92 ~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 169 (612)
.. .......+...+.+++|+|+++.++++..+. +..|+.++...... ...+.+++|+|+++ ++++|+.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~------i~~~~~~~~~~~~~--~~~~~~~~~s~~~~-~l~~g~~d 157 (299)
T d1nr0a2 87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH------IAIYSHGKLTEVPI--SYNSSCVALSNDKQ-FVAVGGQD 157 (299)
T ss_dssp SSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSE------EEEEETTEEEEEEC--SSCEEEEEECTTSC-EEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccc------cccccccccccccc--cccccccccccccc-cccccccc
Confidence 42 2334556788999999999999888877664 55666655554443 34578899999999 59999999
Q ss_pred CeEEEEeCCCCeeee-cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 170 FLVNFYEGPPFKFKL-SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 170 ~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
+.|++||+++++... ....|..+|.+++|+|++++|++++.|+.|++||+.++...........|..+|.+++|+|+++
T Consensus 158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 237 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999998877554 3457899999999999999999999999999999998887766655567899999999999999
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc
Q 007229 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK 328 (612)
Q Consensus 249 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 328 (612)
+|++++.||.|++||+ ..+........ ...+..
T Consensus 238 ~l~sgs~dg~i~iwd~----~~~~~~~~~~~-------------------------------------------~~~~~~ 270 (299)
T d1nr0a2 238 RLATGSLDNSVIVWNM----NKPSDHPIIIK-------------------------------------------GAHAMS 270 (299)
T ss_dssp EEEEEETTSCEEEEET----TCTTSCCEEET-------------------------------------------TSSTTS
T ss_pred ceEEEcCCCEEEEEEC----CCCCcceEEEe-------------------------------------------cCCCCC
Confidence 9999999999999998 44332211111 112344
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEcC
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIRG 358 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 358 (612)
.+..+.+.+ +.+|++++.|+.|++||+.
T Consensus 271 ~v~~~~~~~--~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 271 SVNSVIWLN--ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CEEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred cEEEEEECC--CCEEEEEeCCCEEEEEecc
Confidence 566666656 7899999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-39 Score=304.57 Aligned_cols=344 Identities=12% Similarity=0.112 Sum_probs=238.0
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe--eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK--FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
..++|+|++|+|++. +|++|+.|+.|++||..+++ .+..+++|.++|.+++|+|++++|++++.|++|++||+.++.
T Consensus 6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence 347899999999999 59999999999999998765 566688999999999999999999999999999999998877
Q ss_pred eeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEE
Q 007229 224 KIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVS 303 (612)
Q Consensus 224 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (612)
....+.. .+|...|.+++|+|++++|++++.|+.+++|++ ..........
T Consensus 85 ~~~~~~~-~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~----~~~~~~~~~~------------------------- 134 (371)
T d1k8kc_ 85 WKPTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYF----EQENDWWVCK------------------------- 134 (371)
T ss_dssp EEEEEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE----ETTTTEEEEE-------------------------
T ss_pred ccccccc-ccccccccccccccccccceeecccCcceeeee----eccccccccc-------------------------
Confidence 5544432 378899999999999999999999999999998 3322211111
Q ss_pred cCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEE
Q 007229 304 LGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVI 383 (612)
Q Consensus 304 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l 383 (612)
.....|...|.+++|++ ++.+|++++.|+.+++|+.............
T Consensus 135 -----------------~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~-------------- 182 (371)
T d1k8kc_ 135 -----------------HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT-------------- 182 (371)
T ss_dssp -----------------EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCB--------------
T ss_pred -----------------ccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccc--------------
Confidence 22345788899999984 3789999999999999998654322111100
Q ss_pred EEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceee-ecccceEEEEEEccCC
Q 007229 384 FTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSK-IDLGFTVTACAIAPDG 462 (612)
Q Consensus 384 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~ 462 (612)
.|+.... ....... ..+...+.+++|+|++
T Consensus 183 ----------~~~~~~~---------------------------------------~~~~~~~~~~~~~~v~~~~~s~~g 213 (371)
T d1k8kc_ 183 ----------PWGSKMP---------------------------------------FGELMFESSSSCGWVHGVCFSANG 213 (371)
T ss_dssp ----------TTBSCCC---------------------------------------TTCEEEECCCCSSCEEEEEECSSS
T ss_pred ----------ccccccc---------------------------------------ceeeeeeccCccCcEEEEEeeccc
Confidence 0000000 0011111 1255679999999999
Q ss_pred CeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccc---c
Q 007229 463 SEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTA---R 539 (612)
Q Consensus 463 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~ 539 (612)
++|++++.|+.|++||+.++.. ...+..|..+|.+++|+|++++|++|. |+.+++|.......... +..+.. .
T Consensus 214 ~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 289 (371)
T d1k8kc_ 214 SRVAWVSHDSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS-FGGRLDVPKQ 289 (371)
T ss_dssp SEEEEEETTTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEE-ECCCCCCC--
T ss_pred ccccccccCCcceEEeeecccc--eeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEE-EeeeecCccc
Confidence 9999999999999999998776 677888999999999999999888765 67777766544332211 111110 0
Q ss_pred eeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cC----ceEEEccCCCeEEEEEecc
Q 007229 540 INCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DD----FNVVSSGEDACIRVWRLAT 611 (612)
Q Consensus 540 i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~----~~l~s~~~d~~i~~w~~~~ 611 (612)
......+.... + ...|.......... ........|.+.|+++++. ++ ..++|+|.||.|++||+++
T Consensus 290 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~---~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 290 SSQRGLTARER-F--QNLDKKASSEGSAA---AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp ------CHHHH-H--HHCCCCC------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccccceee-E--ecccceeEEecccc---ccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 00000000000 0 00111111111111 1122234699999999997 33 2488999999999999864
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-37 Score=286.74 Aligned_cols=329 Identities=16% Similarity=0.286 Sum_probs=252.4
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
|+..+.++...+++|.+.|.+ +++++|++|++|+.||+|+|||+.+++++..+ .+|...|.+++|+|+ +|++++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~---~~h~~~V~~v~~~~~--~l~s~s 74 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVWSSQMRDN--IIISGS 74 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC---CCCSSCEEEEEEETT--EEEEEE
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE---eCCCCCEEEEEeCCC--ccccce
Confidence 555666777889999999865 46778999999999999999999999999888 489999999999864 899999
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.|+.+++|+. ........... +...+....
T Consensus 75 ~D~~~~~~~~----~~~~~~~~~~~----------------------------------------------~~~~~~~~~ 104 (342)
T d2ovrb2 75 TDRTLKVWNA----ETGECIHTLYG----------------------------------------------HTSTVRCMH 104 (342)
T ss_dssp TTSCEEEEET----TTTEEEEEECC----------------------------------------------CSSCEEEEE
T ss_pred eccccccccc----ccccceecccc----------------------------------------------cceeEeeee
Confidence 9999999998 44443332221 122222222
Q ss_pred EEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCc
Q 007229 335 ALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQP 414 (612)
Q Consensus 335 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 414 (612)
. . ...+..+..|+.+.+|+..+++.....................++.++.++.+++|+.......
T Consensus 105 ~-~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~----------- 170 (342)
T d2ovrb2 105 L-H--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL----------- 170 (342)
T ss_dssp E-E--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEE-----------
T ss_pred c-c--cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceee-----------
Confidence 2 2 5677788888888888888887766665555555555557788888888999999987654321
Q ss_pred ceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecccc
Q 007229 415 LDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHR 494 (612)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 494 (612)
..+. ........+++++.++++++.||.|++||++.++. ...+.+|.
T Consensus 171 ------------------------------~~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~--~~~~~~~~ 217 (342)
T d2ovrb2 171 ------------------------------HTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQ 217 (342)
T ss_dssp ------------------------------EEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--EEEECCCC
T ss_pred ------------------------------EEEc-CcccccccccCCCCEEEEEeCCCeEEEeeccccee--eeEecccc
Confidence 1111 01123445666889999999999999999998876 67788899
Q ss_pred CceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeec--ccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcc
Q 007229 495 GAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNN--MLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASS 572 (612)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 572 (612)
..+.++++++ ++|++++.|+.|++||+...+..... ...|...+.++.++ ++++++|+.||+|++||+++ + +
T Consensus 218 ~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t-g-~ 291 (342)
T d2ovrb2 218 SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT-G-E 291 (342)
T ss_dssp SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-C-C
T ss_pred cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC-C-C
Confidence 9999888765 59999999999999999888765332 23356667777765 56999999999999999998 5 5
Q ss_pred eeeee-----cccccCeeeEEEe-cCceEEEccCCCe----EEEEEeccC
Q 007229 573 RITIK-----NAHLGGVYGVAFM-DDFNVVSSGEDAC----IRVWRLATE 612 (612)
Q Consensus 573 ~~~~~-----~~h~~~v~~~~~~-~~~~l~s~~~d~~----i~~w~~~~~ 612 (612)
++..+ .+|.+.|++++|+ ++.+|++|+.||+ |++||++.+
T Consensus 292 ~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 55544 3678889999999 7778899988885 999999864
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-37 Score=283.77 Aligned_cols=333 Identities=17% Similarity=0.247 Sum_probs=260.8
Q ss_pred EeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCC
Q 007229 44 RYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 44 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
|+..+.++.+.|+||++.|.+ +++++|++||||+.||+|+|||+.+++ +...+.+|...|.+++|+|+ +|++++.+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~h~~~V~~v~~~~~--~l~s~s~D 76 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRDN--IIISGSTD 76 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEETT--EEEEEETT
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-EEEEEeCCCCCEEEEEeCCC--ccccceec
Confidence 556667788889999999865 477789999999999999999999998 55688999999999999875 89999988
Q ss_pred CCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCC
Q 007229 124 KGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGS 203 (612)
Q Consensus 124 ~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 203 (612)
+ .+++|.............+...+......+. .+..+..|+.+.+|+..+++....+..+...... +.+...
T Consensus 77 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 148 (342)
T d2ovrb2 77 R---TLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGR 148 (342)
T ss_dssp S---CEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSS
T ss_pred c---cccccccccccceecccccceeEeeeecccc---cccccccceeEEEeecccccceeeeeccccccee--eccccc
Confidence 8 5678888787777777777788877776665 5888999999999999999887776655544433 345567
Q ss_pred eEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCcc
Q 007229 204 KLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSN 283 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 283 (612)
.+++++.|+.+++||....+.+..+ .+|...+..+ .+++.++++++.||.|++||+ ..++.+..
T Consensus 149 ~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~----~~~~~~~~------- 212 (342)
T d2ovrb2 149 RVVSGAYDFMVKVWDPETETCLHTL---QGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDV----ETGNCIHT------- 212 (342)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEE---CCCSSCEEEE--EECSSEEEEEETTSCEEEEET----TTCCEEEE-------
T ss_pred eeeeecCCCeEEEeecccceeeEEE---cCcccccccc--cCCCCEEEEEeCCCeEEEeec----ccceeeeE-------
Confidence 8899999999999999998888877 3666665554 457889999999999999999 65555433
Q ss_pred ccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceee
Q 007229 284 AVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSS 363 (612)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 363 (612)
+.+|...+.++.+. ++++++++.||.|++||....+..
T Consensus 213 ---------------------------------------~~~~~~~v~~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~ 250 (342)
T d2ovrb2 213 ---------------------------------------LTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCL 250 (342)
T ss_dssp ---------------------------------------ECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEE
T ss_pred ---------------------------------------ecccccceeEEecC---CCEEEEEcCCCEEEEEeccccccc
Confidence 33466677777665 679999999999999998776543
Q ss_pred eeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccc
Q 007229 364 KLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKV 443 (612)
Q Consensus 364 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (612)
.....+
T Consensus 251 ~~~~~~-------------------------------------------------------------------------- 256 (342)
T d2ovrb2 251 QTLQGP-------------------------------------------------------------------------- 256 (342)
T ss_dssp EEECST--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 322100
Q ss_pred eeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccccee---eccccCceEEEEEcCCCcEEEEEcCCCe---
Q 007229 444 MSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMV---LEKHRGAITVIQYSPDVSMFASADGNRE--- 517 (612)
Q Consensus 444 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~d~~--- 517 (612)
..+...+.++.+ +++++++|+.||.|++||+++++...... ..+|.+.|++++|+|++.+||+|+.||+
T Consensus 257 ---~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~ 331 (342)
T d2ovrb2 257 ---NKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331 (342)
T ss_dssp ---TSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred ---ceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCee
Confidence 001223555555 45799999999999999999887632221 2468889999999999999999999985
Q ss_pred -EEEEecCC
Q 007229 518 -AIVWDRVS 525 (612)
Q Consensus 518 -i~iwd~~~ 525 (612)
|++||+..
T Consensus 332 ~l~~~Df~~ 340 (342)
T d2ovrb2 332 KLLVLDFDV 340 (342)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 99999864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.3e-36 Score=278.43 Aligned_cols=317 Identities=13% Similarity=0.139 Sum_probs=248.0
Q ss_pred CCCCce-eEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCce
Q 007229 16 TERGRG-ILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFV 93 (612)
Q Consensus 16 ~~~~~v-~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~ 93 (612)
+|...| +|+ ++|+++||+|+ |+.|+|||+.+++++..+.+|++.|++++|+|++ +|++|+.|++|++|+....+.
T Consensus 10 GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~ 86 (355)
T d1nexb2 10 GHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC 86 (355)
T ss_dssp CCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEE
T ss_pred CcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccccccc
Confidence 476665 554 55788999998 8999999999999999999999999999999864 899999999999999998875
Q ss_pred eeeeee-ecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeee-----------------------eccCCce
Q 007229 94 LKNEFK-VLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGD-----------------------FDGHSRR 149 (612)
Q Consensus 94 ~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~-----------------------~~~~~~~ 149 (612)
...... .+........++++++++++++.++ .+++|+..+...... ...|...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (355)
T d1nexb2 87 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN---TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 163 (355)
T ss_dssp EEEECCCSSCEEEEEEEEETTEEEEEEEETTS---EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC
T ss_pred ccccccccccccccccccccccceeeeecCCC---cEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc
Confidence 332222 2223456677889999999999988 567777665443221 2233444
Q ss_pred EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee
Q 007229 150 VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS 229 (612)
Q Consensus 150 v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 229 (612)
+.. +.++++ +++++..|+.|++||+.+++.+....++...+.++.|+|+++++++++.|+.|++||.+++..+..+
T Consensus 164 v~~--~~~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~- 239 (355)
T d1nexb2 164 VRT--VSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL- 239 (355)
T ss_dssp EEE--EEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE-
T ss_pred ccc--cccccc-eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc-
Confidence 443 444556 6999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEE
Q 007229 230 SEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIIS 309 (612)
Q Consensus 230 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 309 (612)
.+|...|.+++++ +++|++++.||.|++||+ .+............ ........++.+++++.++.|+
T Consensus 240 --~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~g~d~~i~ 306 (355)
T d1nexb2 240 --QGHTALVGLLRLS--DKFLVSAAADGSIRGWDA----NDYSRKFSYHHTNL-----SAITTFYVSDNILVSGSENQFN 306 (355)
T ss_dssp --CCCSSCCCEEEEC--SSEEEEECTTSEEEEEET----TTCCEEEEEECTTC-----CCCCEEEECSSEEEEEETTEEE
T ss_pred --ccccccccccccc--cceeeeeecccccccccc----cccceecccccCCc-----eEEEEEcCCCCEEEEEeCCEEE
Confidence 4899999999986 578999999999999999 66655444332211 1112223355666677799999
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEc
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIR 357 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 357 (612)
+||++........+.+|...|.+++|++ ..++++++.||.+++|.+
T Consensus 307 vwd~~tg~~~~~~~~~~~~~V~~v~~~~--~~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 307 IYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEETTTCCBCCSCTTTTCSEEEEEEEET--TEEEEEEESSSCEEEEEE
T ss_pred EEECCCCCEEEEEecCCCCCEEEEEEcC--CeEEEEEECCCcEEEEEE
Confidence 9998876665567788999999999986 567888999999777643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-35 Score=264.98 Aligned_cols=273 Identities=25% Similarity=0.346 Sum_probs=213.8
Q ss_pred CeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcE
Q 007229 180 FKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSA 259 (612)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 259 (612)
.++++++++|..+|++++|+| |++|+.||+|++||+.++. ..|...|.++++++++ .+++++.|+++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~--------~~h~~~V~~~~~~~~~-~~~s~s~D~~v 69 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH--------QDHSNLIVSLDNSKAQ-EYSSISWDDTL 69 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE--------CCCCSCEEEEECCSTT-CCEEEETTTEE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC--------CCCCCCEEEEEecCCC-eEEEEeecccc
Confidence 467788999999999999987 9999999999999986532 3788999999998765 57889999999
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
++|++ ...+ ....+..+.+.+
T Consensus 70 ~~w~~----~~~~-----------------------------------------------------~~~~~~~~~~~~-- 90 (287)
T d1pgua2 70 KVNGI----TKHE-----------------------------------------------------FGSQPKVASANN-- 90 (287)
T ss_dssp EETTE----EEEE-----------------------------------------------------CSSCEEEEEECS--
T ss_pred ccccc----cccc-----------------------------------------------------cccceeeeeecc--
Confidence 99997 2111 011223333333
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeee
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (612)
+..++..+.++.+.+|+...+.......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 118 (287)
T d1pgua2 91 DGFTAVLTNDDDLLILQSFTGDIIKSVR---------------------------------------------------- 118 (287)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE----------------------------------------------------
T ss_pred CCceEEEeecccceeeeccceeeeeecc----------------------------------------------------
Confidence 3444444556667777766554332211
Q ss_pred cCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCC-eEEEEEccCcccccceeeccccCceE
Q 007229 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG-KLHIYSISGNTLTEEMVLEKHRGAIT 498 (612)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~i~ 498 (612)
.. ....++++++..+++++.++ .+++|++...... ......|.++++
T Consensus 119 -----------------------------~~--~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~ 166 (287)
T d1pgua2 119 -----------------------------LN--SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS-FDLKTPLRAKPS 166 (287)
T ss_dssp -----------------------------CS--SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE-EECSSCCSSCEE
T ss_pred -----------------------------cc--ceeeeeeccCcceeeeccccceeeeeecccccee-eeeeeccCCcee
Confidence 11 12345677888888888775 7999998765542 223345788999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCC----------CcEEEEeecCcEEEEEEccC
Q 007229 499 VIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPS----------STMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 499 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~----------~~~l~s~~~d~~i~iwd~~~ 568 (612)
+++|+|++.+|++++.||.|++||+.+++.....+.+|..+|++++|+|+ +.+|++|+.|++|++||+++
T Consensus 167 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred EEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence 99999999999999999999999999998876778889999999999875 46899999999999999988
Q ss_pred CCcceeeeecccccCeeeEEEecCceEEEccCCCeEEEEEe
Q 007229 569 PASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 569 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~ 609 (612)
+. +.+..+.+|...|++++|+++..|++++.|++|++|++
T Consensus 247 ~~-~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 247 PM-KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp TT-CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CC-eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 66 78888999999999999996678999999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=6.4e-36 Score=279.73 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=158.3
Q ss_pred eeEEEEcc-CCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc--CeEEEeecCCCceeeee
Q 007229 21 GILISGNP-KTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS--GSVRIWGTHNGFVLKNE 97 (612)
Q Consensus 21 v~~~~~s~-d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d--~~i~iwd~~~~~~~~~~ 97 (612)
..+-.||| ||+++|+++.+.|++||+++++..+ + +|...|++++|||||++|++++.+ ..|++||..+++ +. .
T Consensus 5 ~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~-~ 80 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AE-K 80 (360)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EE-E
T ss_pred hhcccccCCCCCEEEEEECCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EE-E
Confidence 34678999 9999999999999999999888766 3 699999999999999999987654 378999998875 21 2
Q ss_pred eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeC
Q 007229 98 FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEG 177 (612)
Q Consensus 98 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~ 177 (612)
+. .|...|.+++|+|+++ .|++++.++.+++|+.
T Consensus 81 ~~---------------------------------------------~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~ 114 (360)
T d1k32a3 81 FE---------------------------------------------ENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDL 114 (360)
T ss_dssp CC---------------------------------------------CCCCSEEEEEECTTSS-EEEEEETTSEEEEEET
T ss_pred ee---------------------------------------------CCCceEEeeeeccccc-ccceeccccccccccc
Confidence 22 3555566666666666 4777888888999999
Q ss_pred CCCeeeecccccccceEEEEECCCCCeEEEEEc----------CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCC
Q 007229 178 PPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----------DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDG 247 (612)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 247 (612)
.+++....+..|...+.+++|+|||++|+.+.. ++.+++||+.+++..... .+...+..++|+|+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~----~~~~~~~~~~~spdg 190 (360)
T d1k32a3 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT----TENSHDYAPAFDADS 190 (360)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS----CSSSBEEEEEECTTS
T ss_pred cccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec----ccccccccccccCCC
Confidence 999988888899999999999999999987543 456899999988776666 677788999999999
Q ss_pred CEEEEEeCCCcEEEEEe
Q 007229 248 KKVLTVSADKSAKVWEI 264 (612)
Q Consensus 248 ~~l~~~~~dg~i~iw~~ 264 (612)
++|++++.++.+.+|+.
T Consensus 191 ~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 191 KNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp CEEEEEESCCCCCEECS
T ss_pred CEEEEEeCCCceEcccc
Confidence 99999999999999987
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-34 Score=262.02 Aligned_cols=289 Identities=13% Similarity=0.166 Sum_probs=215.3
Q ss_pred ceEEEEECCCCCeEEEEEcCC-cEEEEecCCCCe--eeeeeccCCc-cccEEEEEEec--CCCEEEEEeCCCcEEEEEee
Q 007229 192 FVNCIRFSPDGSKLISVSSDR-KGLIYDGKSGEK--IGEFSSEDGH-HGSIYAVSWSP--DGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 192 ~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~--~~~~~~~~~~-~~~v~~i~~~~--~~~~l~~~~~dg~i~iw~~~ 265 (612)
.+.+++|+|+++.|+.++.+. .++.|+....+. ...+ .+| ...|++++|+| ++++|++++.||+|++||+
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~---~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~- 94 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF---TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW- 94 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE---CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE-
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE---eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee-
Confidence 467899999999999887554 356676544432 3333 255 56899999998 6789999999999999999
Q ss_pred cCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEE
Q 007229 266 EDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILS 345 (612)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 345 (612)
..++....+.... ...+..|..+|.+++|++. +..+++
T Consensus 95 ---~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~v~~v~~s~~-~~~l~~ 132 (325)
T d1pgua1 95 ---TFDKESNSVEVNV--------------------------------------KSEFQVLAGPISDISWDFE-GRRLCV 132 (325)
T ss_dssp ---EEEGGGTEEEEEE--------------------------------------EEEEECCSSCEEEEEECTT-SSEEEE
T ss_pred ---cCCcceeeeeccc--------------------------------------ccccccccCcEEEEEECCC-CCccce
Confidence 4333322222110 1234568889999999832 666665
Q ss_pred Ee--cCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCC
Q 007229 346 SS--YDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSS 423 (612)
Q Consensus 346 ~~--~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (612)
++ .++.+.+|+.++++......
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 156 (325)
T d1pgua1 133 VGEGRDNFGVFISWDSGNSLGEVS-------------------------------------------------------- 156 (325)
T ss_dssp EECCSSCSEEEEETTTCCEEEECC--------------------------------------------------------
T ss_pred eeccccceEEEEeecccccceeee--------------------------------------------------------
Confidence 54 46678888877654433221
Q ss_pred CcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCe-EEEEecCCeEEEEEccCccccc-ceeeccccCceEEEE
Q 007229 424 PELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSE-AIVGGQNGKLHIYSISGNTLTE-EMVLEKHRGAITVIQ 501 (612)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~~~i~~~~ 501 (612)
.|...+++++|+|++.+ +++++.|+.+++||....+... ......|...|++++
T Consensus 157 ------------------------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 157 ------------------------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 212 (325)
T ss_dssp ------------------------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred ------------------------ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence 13446889999999876 6778899999999998766422 233457788999999
Q ss_pred EcCC-CcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEec---CCCcEEEEeecCcEEEEEEccCCCcceeeee
Q 007229 502 YSPD-VSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWS---PSSTMVATGSIDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 502 ~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 577 (612)
|+|+ +.+|++++.|+.|++||+++++.+ ..+.+|..++..+.|+ ||+++|++++.|+.|+|||+++ + +++..+
T Consensus 213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~-~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~-~-~~~~~~ 289 (325)
T d1pgua1 213 FSPDSGEFVITVGSDRKISCFDGKSGEFL-KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT-S-KCVQKW 289 (325)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEE-EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT-T-EEEEEE
T ss_pred eccccceeccccccccceeeeeecccccc-ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC-C-CEEEEE
Confidence 9996 689999999999999999999887 5577788888877777 7899999999999999999998 6 677766
Q ss_pred cccccC--eeeEEEe--cCceEEEccCCCeEEEEEe
Q 007229 578 NAHLGG--VYGVAFM--DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 578 ~~h~~~--v~~~~~~--~~~~l~s~~~d~~i~~w~~ 609 (612)
..|... +..+++. ++.+|++++.||.|++|||
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 655543 4445554 5678999999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-34 Score=256.69 Aligned_cols=273 Identities=15% Similarity=0.189 Sum_probs=211.9
Q ss_pred CceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEE
Q 007229 137 GTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLI 216 (612)
Q Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 216 (612)
.++++.+.+|..+|++++|+| |++|+.||+|++||+.++. .+|...|.++++++++ .+++++.|+++++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~ 71 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence 468899999999999999986 8999999999999987653 5799999999998765 5789999999999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccC
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQN 296 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (612)
|+.... .....+..+++.+++..++++ .++.+.+|+. ..++.+..+....
T Consensus 72 w~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~--------------- 121 (287)
T d1pgua2 72 NGITKH----------EFGSQPKVASANNDGFTAVLT-NDDDLLILQS----FTGDIIKSVRLNS--------------- 121 (287)
T ss_dssp TTEEEE----------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEET----TTCCEEEEEECSS---------------
T ss_pred cccccc----------ccccceeeeeeccCCceEEEe-ecccceeeec----cceeeeeeccccc---------------
Confidence 997532 223456788889888766665 5667888988 6666665543221
Q ss_pred CEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC-CcEEEEEcCCceeeeeceecccceEE
Q 007229 297 DHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD-GAIIKWIRGVGYSSKLEKKYDARIKC 375 (612)
Q Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~i~~ 375 (612)
.+.. +... +..+++++.+ +.+++|++.........
T Consensus 122 --------------------------------~~~~--~~~~-~~~~~v~~~~~~~v~~~~~~~~~~~~~~--------- 157 (287)
T d1pgua2 122 --------------------------------PGSA--VSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDL--------- 157 (287)
T ss_dssp --------------------------------CEEE--EEEC-SSEEEEEETTTSCEEEEETTEEEEEEEC---------
T ss_pred --------------------------------eeee--eecc-Ccceeeeccccceeeeeeccccceeeee---------
Confidence 1222 2211 4566666555 47899987643322111
Q ss_pred EEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEE
Q 007229 376 LAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTA 455 (612)
Q Consensus 376 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 455 (612)
...+...+++
T Consensus 158 ----------------------------------------------------------------------~~~~~~~v~~ 167 (287)
T d1pgua2 158 ----------------------------------------------------------------------KTPLRAKPSY 167 (287)
T ss_dssp ----------------------------------------------------------------------SSCCSSCEEE
T ss_pred ----------------------------------------------------------------------eeccCCceeE
Confidence 0113346899
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC----------CcEEEEEcCCCeEEEEecCC
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD----------VSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~----------~~~l~~~~~d~~i~iwd~~~ 525 (612)
++|+|++++|++|+.||.|++||+.++... ...+..|..+|.+++|+|+ +.+|++|+.|++|++||+++
T Consensus 168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 168 ISISPSETYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred EEeccCccccccccccccccceeecccccc-cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence 999999999999999999999999887652 3346789999999999875 46899999999999999988
Q ss_pred cceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEc
Q 007229 526 KEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEI 566 (612)
Q Consensus 526 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~ 566 (612)
+......+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus 247 ~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 247 PMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 665557788899999999999987 5889999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-33 Score=264.93 Aligned_cols=341 Identities=12% Similarity=0.123 Sum_probs=227.7
Q ss_pred eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee------cccccccceEEEE------ECC-CCCeEEE
Q 007229 141 GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL------SHREHSNFVNCIR------FSP-DGSKLIS 207 (612)
Q Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~------~~~~~~~~v~~~~------~s~-~~~~l~~ 207 (612)
...++|...|.+++++++ .+++++.|++|++||..+..... ....|...+..+. .++ ++.++++
T Consensus 8 ~~~~~H~~~I~~v~~~~~---~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EESSCSSSCEEEEEECSS---EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred ecCCcccCccEEEEEeCC---EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 345789999999999764 59999999999999976543211 1122333332222 121 2346788
Q ss_pred EEcCCcEEEEecCCCCeeeeee-------ccCCccccEEEEEEecC-----CCEEEEEeCCCcEEEEEeecCCCCCeeEe
Q 007229 208 VSSDRKGLIYDGKSGEKIGEFS-------SEDGHHGSIYAVSWSPD-----GKKVLTVSADKSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 208 ~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~v~~i~~~~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 275 (612)
++.||.+++|++.......... ....+...+..++|.++ +.++++++.||.+++|++........
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~--- 161 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN--- 161 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH---
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc---
Confidence 9999999999976554322211 11234566778888775 46889999999999999832111000
Q ss_pred eeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEE
Q 007229 276 TFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKW 355 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 355 (612)
.+.... .....+. ........+...+.++++++ ..++++|+.||.|++|
T Consensus 162 ~~~~~~-----------------------~~~~~~~------~~~~~~~~~~~~~~~v~~s~--dg~lasgs~Dg~i~iw 210 (393)
T d1sq9a_ 162 SLTLNW-----------------------SPTLELQ------GTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQIS 210 (393)
T ss_dssp HTTTCC-----------------------CCEEEEE------EEECCSSSSCCCCCEEEECT--TSEEEEECTTSEEEEE
T ss_pred eeeeee-----------------------ccceecc------cceecccCCCCcEEEEEECC--CCEEEEEeCCCcEEEE
Confidence 000000 0000000 00112234556678888886 5589999999999999
Q ss_pred EcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccE
Q 007229 356 IRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGV 435 (612)
Q Consensus 356 d~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (612)
|+.+++.......
T Consensus 211 d~~~~~~~~~~~~------------------------------------------------------------------- 223 (393)
T d1sq9a_ 211 ELSTLRPLYNFES------------------------------------------------------------------- 223 (393)
T ss_dssp ETTTTEEEEEEEC-------------------------------------------------------------------
T ss_pred eeccccccccccc-------------------------------------------------------------------
Confidence 9987765433220
Q ss_pred EEeecccceeeecccceEEEEEEccCCCeEEEEecCC---eEEEEEccCccccc-----------ceeeccccCceEEEE
Q 007229 436 ILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNG---KLHIYSISGNTLTE-----------EMVLEKHRGAITVIQ 501 (612)
Q Consensus 436 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~v~i~d~~~~~~~~-----------~~~~~~~~~~i~~~~ 501 (612)
......|...|++++|+||+++|++|+.|+ .|++||+++++... ...+.+|.+.|++++
T Consensus 224 -------~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~ 296 (393)
T d1sq9a_ 224 -------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296 (393)
T ss_dssp -------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred -------ccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeec
Confidence 000112556799999999999999999987 59999998876521 122357999999999
Q ss_pred EcCCCcEEEEEcCCCeEEEEecCCcceeeeccccccccee----EEEecCCCcEEEEeecCcEEEEEEccCCCcceeeee
Q 007229 502 YSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARIN----CLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIK 577 (612)
Q Consensus 502 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~----~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 577 (612)
|+||+++|++++.|++|++||+++++++ ..+.+|...|. .++|+|++..+++++. ..++.+.... +.
T Consensus 297 fspd~~~l~S~s~D~~v~vWd~~~g~~~-~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~---- 367 (393)
T d1sq9a_ 297 FNDSGETLCSAGWDGKLRFWDVKTKERI-TTLNMHCDDIEIEEDILAVDEHGDSLAEPGV---FDVKFLKKGW-RS---- 367 (393)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEE-EEEECCGGGCSSGGGCCCBCTTSCBCSSCCE---EEEEEECTTT-SB----
T ss_pred cCCCCCeeEEECCCCEEEEEECCCCCEE-EEECCcCCcccCCccEEEECCCCCEEEEccc---ceEEECccCc-ee----
Confidence 9999999999999999999999999887 66888998886 4889999998876642 2233333311 10
Q ss_pred cccccCeeeEEEecCceEEEccCCCeEEEEEe
Q 007229 578 NAHLGGVYGVAFMDDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 578 ~~h~~~v~~~~~~~~~~l~s~~~d~~i~~w~~ 609 (612)
.+.......|++++.|+.|++|+-
T Consensus 368 --------~~~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 368 --------GMGADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp --------STTCTTSCEEEEEETTTEEEEEEE
T ss_pred --------ccccCCCCEEEEEEcCCeEEEEeC
Confidence 000013456889999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-32 Score=245.43 Aligned_cols=279 Identities=19% Similarity=0.271 Sum_probs=212.9
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
.+..+..|...|+|++| +++ +|++|+.||+|++||+.+++++.++.+|..+|.+++| ++++|++++.|+.|++|+
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 81 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred EEeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccc
Confidence 34556678889998765 677 5999999999999999999999999999999999887 578999999999999999
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCE
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDH 298 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (612)
+..+....... .+... ...+.+....++++..++.+.+|+. .........
T Consensus 82 ~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------------------- 131 (293)
T d1p22a2 82 VNTGEMLNTLI---HHCEA--VLHLRFNNGMMVTCSKDRSIAVWDM----ASPTDITLR--------------------- 131 (293)
T ss_dssp SSSCCEEEEEC---CCCSC--EEEEECCTTEEEEEETTSCEEEEEC----SSSSCCEEE---------------------
T ss_pred ccccccccccc---ccccc--cccccccccceeecccccceeEeec----ccccccccc---------------------
Confidence 99998877762 22222 3345556678899999999999998 433322111
Q ss_pred EEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe
Q 007229 299 LITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA 378 (612)
Q Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~ 378 (612)
..+..|...+....+. ...+++++.|+.+++||..+.+.......+
T Consensus 132 ----------------------~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~--------- 177 (293)
T d1p22a2 132 ----------------------RVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGH--------- 177 (293)
T ss_dssp ----------------------EEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECC---------
T ss_pred ----------------------ccccccccccccceec---ccccccccCCCceeeecCCCCcEEEEEccc---------
Confidence 2233466666665555 577888889999999998876554332211
Q ss_pred eccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEE
Q 007229 379 VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAI 458 (612)
Q Consensus 379 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 458 (612)
...+..+.+
T Consensus 178 -----------------------------------------------------------------------~~~v~~~~~ 186 (293)
T d1p22a2 178 -----------------------------------------------------------------------KRGIACLQY 186 (293)
T ss_dssp -----------------------------------------------------------------------SSCEEEEEE
T ss_pred -----------------------------------------------------------------------ccccccccC
Confidence 112334444
Q ss_pred ccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcc--------eee
Q 007229 459 APDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKE--------VKL 530 (612)
Q Consensus 459 s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--------~~~ 530 (612)
++.++++++.||.|++||+.+... .....+|...+.. +++++.+|++++.||.|++||+.... ...
T Consensus 187 --~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 260 (293)
T d1p22a2 187 --RDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260 (293)
T ss_dssp --ETTEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEE
T ss_pred --CCCeEEEecCCCEEEEEeccccee--eeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceee
Confidence 456899999999999999988776 5667778877765 56788899999999999999975432 223
Q ss_pred ecccccccceeEEEecCCCcEEEEeecCcEEEEEE
Q 007229 531 NNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYE 565 (612)
Q Consensus 531 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd 565 (612)
..+.+|.++|++++| ++++|++++.||+|+|||
T Consensus 261 ~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 261 RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 557789999999999 467899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.6e-32 Score=255.39 Aligned_cols=307 Identities=16% Similarity=0.103 Sum_probs=205.5
Q ss_pred cccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeee---ccCCccccEEEEEE---ec----CCCEEEEEe
Q 007229 185 SHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFS---SEDGHHGSIYAVSW---SP----DGKKVLTVS 254 (612)
Q Consensus 185 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~v~~i~~---~~----~~~~l~~~~ 254 (612)
..++|...|.++++++ +++++++.|++|++||..+.+...... ....|...+..+.. .+ ++.++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 3579999999999874 689999999999999987654321110 00133333322222 11 234678899
Q ss_pred CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEE
Q 007229 255 ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLT 334 (612)
Q Consensus 255 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 334 (612)
.||.+++|++................ .....+...+..++
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~ 126 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDL----------------------------------------LDSDMKKHSFWALK 126 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECC----------------------------------------SCTTGGGSCEEEEE
T ss_pred CCCcEEEEEccCCCceeeeeccccce----------------------------------------eeeccCCCceEEEE
Confidence 99999999984332222221111000 01112334455555
Q ss_pred EEe----cCCcEEEEEecCCcEEEEEcCCceeeeecee-cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceec
Q 007229 335 ALK----ISQQTILSSSYDGAIIKWIRGVGYSSKLEKK-YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHID 409 (612)
Q Consensus 335 ~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (612)
+.. ....++++++.||.+++|++........... +..... .+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~------------------~~~-------------- 174 (393)
T d1sq9a_ 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL------------------ELQ-------------- 174 (393)
T ss_dssp EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE------------------EEE--------------
T ss_pred EecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccce------------------ecc--------------
Confidence 541 1246788888999999998754322111000 000000 000
Q ss_pred cCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccccc---
Q 007229 410 VGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTE--- 486 (612)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~--- 486 (612)
........+...+.+++|+|++ +||+|+.||.|++||+.+++...
T Consensus 175 -------------------------------~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~ 222 (393)
T d1sq9a_ 175 -------------------------------GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE 222 (393)
T ss_dssp -------------------------------EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred -------------------------------cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccc
Confidence 0000111133457899999997 89999999999999999876522
Q ss_pred -ceeeccccCceEEEEEcCCCcEEEEEcCCC---eEEEEecCCcceeee------------cccccccceeEEEecCCCc
Q 007229 487 -EMVLEKHRGAITVIQYSPDVSMFASADGNR---EAIVWDRVSKEVKLN------------NMLFHTARINCLAWSPSST 550 (612)
Q Consensus 487 -~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~~~------------~~~~~~~~i~~~~~s~~~~ 550 (612)
...+.+|..+|++++|+||+++|++|+.|+ .|++||+++++.+.. .+.+|...|++++|+||++
T Consensus 223 ~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~ 302 (393)
T d1sq9a_ 223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302 (393)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred cccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC
Confidence 234567999999999999999999999886 599999998876532 2347999999999999999
Q ss_pred EEEEeecCcEEEEEEccCCCcceeeeecccccCee----eEEEe-cCceEEEcc
Q 007229 551 MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVY----GVAFM-DDFNVVSSG 599 (612)
Q Consensus 551 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~----~~~~~-~~~~l~s~~ 599 (612)
+|++++.|++|+|||+++ + +++.++++|.+.|. .++|+ ++..+++++
T Consensus 303 ~l~S~s~D~~v~vWd~~~-g-~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 303 TLCSAGWDGKLRFWDVKT-K-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp EEEEEETTSEEEEEETTT-T-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred eeEEECCCCEEEEEECCC-C-CEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 999999999999999998 7 89999999999886 47788 777776554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-31 Score=241.00 Aligned_cols=277 Identities=18% Similarity=0.233 Sum_probs=220.4
Q ss_pred CCCCceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCcee
Q 007229 16 TERGRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVL 94 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~ 94 (612)
.+...|+|++ +||++||+|+ |+.|+|||++++++++.+.+|.+.|++++| ++++|++|+.|+.|++|++..+...
T Consensus 13 ~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~ 88 (293)
T d1p22a2 13 ETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 88 (293)
T ss_dssp SSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccc
Confidence 4566788765 5899999998 899999999999999999999999999887 6789999999999999999998743
Q ss_pred eeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc---eeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 95 KNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT---TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 95 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
. ....+. .....+.+....++++..++ .+.+|+..... ....+..|...+..+.+.+. .+++++.|+.
T Consensus 89 ~-~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~ 159 (293)
T d1p22a2 89 N-TLIHHC--EAVLHLRFNNGMMVTCSKDR---SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRT 159 (293)
T ss_dssp E-EECCCC--SCEEEEECCTTEEEEEETTS---CEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSE
T ss_pred c-cccccc--cccccccccccceeeccccc---ceeEeeccccccccccccccccccccccceeccc---ccccccCCCc
Confidence 2 222222 23334555666788887777 35677766433 45566789999999888876 5889999999
Q ss_pred EEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEE
Q 007229 172 VNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVL 251 (612)
Q Consensus 172 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 251 (612)
|++||..+++.+..+.++...+..+.++ +.++++++.||.|++||+++.+.+... .++...+.. +++++.+|+
T Consensus 160 i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~--~~~~~~~l~ 232 (293)
T d1p22a2 160 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL---EGHEELVRC--IRFDNKRIV 232 (293)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEE--EECCSSEEE
T ss_pred eeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee---cccceeeee--ccccceEEE
Confidence 9999999999999999999999888776 568999999999999999999988877 366676664 566788999
Q ss_pred EEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccccee
Q 007229 252 TVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331 (612)
Q Consensus 252 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 331 (612)
+++.||.|++||+ ........ .........+.+|...|.
T Consensus 233 sg~~dg~i~iwd~----~~~~~~~~-------------------------------------~~~~~~~~~~~~H~~~V~ 271 (293)
T d1p22a2 233 SGAYDGKIKVWDL----VAALDPRA-------------------------------------PAGTLCLRTLVEHSGRVF 271 (293)
T ss_dssp EEETTSCEEEEEH----HHHTSTTS-------------------------------------CTTTTEEEEECCCSSCCC
T ss_pred EEcCCCEEEEEEC----CCCccccc-------------------------------------cCCceeeEEecCCCCCEE
Confidence 9999999999998 22211110 111223456778999999
Q ss_pred EEEEEecCCcEEEEEecCCcEEEEE
Q 007229 332 TLTALKISQQTILSSSYDGAIIKWI 356 (612)
Q Consensus 332 ~~~~~~~~~~~l~~~~~dg~i~~wd 356 (612)
++++. +.+|++++.||+|++||
T Consensus 272 ~v~~d---~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 272 RLQFD---EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEEC---SSCEEECCSSSEEEEEC
T ss_pred EEEEc---CCEEEEEecCCEEEEeC
Confidence 99884 67899999999999997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.8e-31 Score=252.37 Aligned_cols=366 Identities=10% Similarity=-0.031 Sum_probs=245.8
Q ss_pred EEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee-eeeeec
Q 007229 24 ISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK-NEFKVL 101 (612)
Q Consensus 24 ~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~-~~~~~~ 101 (612)
.+.+++.-++++.+ ++.|.|||.++++++..+..|. .+..++|||||++|++++.|+.|++||+.+++... ..+.
T Consensus 26 ~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~-- 102 (432)
T d1qksa2 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-- 102 (432)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--
T ss_pred ecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEe--
Confidence 33444443345555 6999999999999999998774 69999999999999999999999999998876321 1111
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCe
Q 007229 102 SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFK 181 (612)
Q Consensus 102 ~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 181 (612)
...+|...+.+.+|+|||++++++++.++.|++||..+++
T Consensus 103 ----------------------------------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~ 142 (432)
T d1qksa2 103 ----------------------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142 (432)
T ss_dssp ----------------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred ----------------------------------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence 0112233344445666666555666667777777777766
Q ss_pred eeecccc-----------cccceEEEEECCCCCeEE-EEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE
Q 007229 182 FKLSHRE-----------HSNFVNCIRFSPDGSKLI-SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK 249 (612)
Q Consensus 182 ~~~~~~~-----------~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 249 (612)
.+..+.. +......+.++|++..++ +...++.+.+||..+++....... .+...+..++|+|+|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~ 220 (432)
T d1qksa2 143 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRY 220 (432)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCE
T ss_pred ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCE
Confidence 6655433 234456788999998765 455679999999988875543321 45567889999999998
Q ss_pred EEEEeCC-CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc
Q 007229 250 VLTVSAD-KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK 328 (612)
Q Consensus 250 l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 328 (612)
+++++.+ +.+.+++. ...+....+...... .|..
T Consensus 221 ~~va~~~~~~v~v~d~----~~~~~~~~~~~g~~~-----------------------------------------~~~~ 255 (432)
T d1qksa2 221 FITAANARNKLVVIDT----KEGKLVAIEDTGGQT-----------------------------------------PHPG 255 (432)
T ss_dssp EEEEEGGGTEEEEEET----TTTEEEEEEECSSSS-----------------------------------------BCCT
T ss_pred EEEeccccceEEEeec----ccceEEEEeccCccc-----------------------------------------cccC
Confidence 8877754 57888888 777776665543210 0111
Q ss_pred ceeEEEEEecCCcEEEEE-ecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccce
Q 007229 329 NVSTLTALKISQQTILSS-SYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEH 407 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 407 (612)
......... .+....+. ..++.+.+|.......
T Consensus 256 ~~~~~~~~~-~g~~~~~~~lg~~~v~~~~~~~~~~--------------------------------------------- 289 (432)
T d1qksa2 256 RGANFVHPT-FGPVWATSHMGDDSVALIGTDPEGH--------------------------------------------- 289 (432)
T ss_dssp TCEEEEETT-TEEEEEEEBSSSSEEEEEECCTTTC---------------------------------------------
T ss_pred cccceecCC-CCceecccccCCceEEecccccccc---------------------------------------------
Confidence 111111111 01112111 1244555554322110
Q ss_pred eccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc
Q 007229 408 IDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE 487 (612)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~ 487 (612)
..+...+....++|++..+++++.+...++|+......
T Consensus 290 ---------------------------------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~--- 327 (432)
T d1qksa2 290 ---------------------------------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP--- 327 (432)
T ss_dssp ---------------------------------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS---
T ss_pred ---------------------------------------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC---
Confidence 01223477788999999999999999999998654332
Q ss_pred eeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEee-----cCcEEE
Q 007229 488 MVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGS-----IDTCVI 562 (612)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-----~d~~i~ 562 (612)
|......+++ ||++.|++++.|+.+++|++.++..+ ..|...+.+++|||||++|+... .++.|+
T Consensus 328 -----~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~ 397 (432)
T d1qksa2 328 -----EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALV 397 (432)
T ss_dssp -----SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEE
T ss_pred -----CCCeeeEEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEE
Confidence 3333445555 99999999999999999998666433 34777899999999999886553 478999
Q ss_pred EEEccCCCcceeeeecc
Q 007229 563 IYEIGKPASSRITIKNA 579 (612)
Q Consensus 563 iwd~~~~~~~~~~~~~~ 579 (612)
|||..+ . ++...+++
T Consensus 398 i~D~~T-~-k~~~~i~~ 412 (432)
T d1qksa2 398 VVDDKT-L-ELKHVIKD 412 (432)
T ss_dssp EEETTT-T-EEEEEECC
T ss_pred EEECCC-c-eEEeEecC
Confidence 999998 5 56666654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-32 Score=252.12 Aligned_cols=317 Identities=9% Similarity=0.064 Sum_probs=220.7
Q ss_pred ceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee---cccccccceEEEEECCCC-CeEEEEEcCCc
Q 007229 138 TTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL---SHREHSNFVNCIRFSPDG-SKLISVSSDRK 213 (612)
Q Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~ 213 (612)
+.+...++|.+.|++++|+|+++ +|++|+.||+|++||+.++.... ...+|..+|.+++|+|++ .+|++|+.|+.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence 45667789999999999999999 59999999999999987654332 234699999999999865 57899999999
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeee
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCL 293 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (612)
|++|++..+....... ..+........+.++...+++++.++.+++||+................
T Consensus 81 v~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~------------- 145 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALT--NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN------------- 145 (342)
T ss_dssp EEEECSSSSSSEEECB--SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-------------
T ss_pred eeeeeccccccccccc--ccccccccccccccccccccccccccccceeeccccccceeeecccccc-------------
Confidence 9999999888776663 2344444556677788899999999999999983221111111111100
Q ss_pred ccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccce
Q 007229 294 WQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARI 373 (612)
Q Consensus 294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i 373 (612)
..........+. ..+..+++++.|+.|++|++...........
T Consensus 146 -------------------------------~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~----- 188 (342)
T d1yfqa_ 146 -------------------------------NTKVKNKIFTMD-TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE----- 188 (342)
T ss_dssp -------------------------------SSSSCCCEEEEE-ECSSEEEEEESTTEEEEEESSCCTTCCCEEE-----
T ss_pred -------------------------------cccceeeeeeee-ccCCceeeecCCCcEEEEecccCcccceeee-----
Confidence 011111222222 2267888888999999998775543222110
Q ss_pred EEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceE
Q 007229 374 KCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTV 453 (612)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 453 (612)
........
T Consensus 189 ------------------------------------------------------------------------~~~~~~~~ 196 (342)
T d1yfqa_ 189 ------------------------------------------------------------------------ESGLKYQI 196 (342)
T ss_dssp ------------------------------------------------------------------------ECSCSSCE
T ss_pred ------------------------------------------------------------------------ecccccce
Confidence 00011123
Q ss_pred EEEE-EccCCCeEEEEecCCeEEEEEccCccccc-------------ceeeccccCceEEEEEcCCCcEEEEEcCCCeEE
Q 007229 454 TACA-IAPDGSEAIVGGQNGKLHIYSISGNTLTE-------------EMVLEKHRGAITVIQYSPDVSMFASADGNREAI 519 (612)
Q Consensus 454 ~~~~-~s~~~~~l~~~~~dg~v~i~d~~~~~~~~-------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 519 (612)
.+.. +.+++..+++++.||.+.+|+........ ......|...+++++|+|++++||+|+.||.|+
T Consensus 197 ~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~ 276 (342)
T d1yfqa_ 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276 (342)
T ss_dssp EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred eeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEE
Confidence 3333 44567889999999999999886543210 112245667899999999999999999999999
Q ss_pred EEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeE
Q 007229 520 VWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGV 587 (612)
Q Consensus 520 iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 587 (612)
+||+++++.+...... ..+..++|+|++++|++++.|..+++|.... ..+..|...|..+
T Consensus 277 vWD~~~~~~l~~~~~~--~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~------~~~~~~~~~i~~~ 336 (342)
T d1yfqa_ 277 CWNLQTRKKIKNFAKF--NEDSVVKIACSDNILCLATSDDTFKTNAAID------QTIELNASSIYII 336 (342)
T ss_dssp EEETTTTEEEEECCCC--SSSEEEEEEECSSEEEEEEECTHHHHCSSSC------TTSCCCCCEEEEE
T ss_pred EEECCCCcEEEEecCC--CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC------CCccCCCCeEEEE
Confidence 9999999887443333 3455678888999999999998888886543 2345566666543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-31 Score=246.21 Aligned_cols=302 Identities=12% Similarity=0.088 Sum_probs=213.6
Q ss_pred eeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecC-CCEEEEEeCCCcE
Q 007229 181 KFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPD-GKKVLTVSADKSA 259 (612)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i 259 (612)
+.+...++|.+.|++|+|+|++++|++++.||+|+|||++++.....+....+|..+|.+++|+|+ +.+|++++.||.+
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 456667899999999999999999999999999999999877665444333379999999999986 5589999999999
Q ss_pred EEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecC
Q 007229 260 KVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKIS 339 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 339 (612)
++|++ ........... +........+...+
T Consensus 82 ~~w~~----~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~ 111 (342)
T d1yfqa_ 82 LKVDL----IGSPSFQALTN----------------------------------------------NEANLGICRICKYG 111 (342)
T ss_dssp EEECS----SSSSSEEECBS----------------------------------------------CCCCSCEEEEEEET
T ss_pred eeeec----ccccccccccc----------------------------------------------cccccccccccccc
Confidence 99998 44443332221 22222223333333
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeee
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSL 419 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (612)
...+++++.++.+++||++.......... ....
T Consensus 112 ~~~~~~~~~~~~~~~wd~~~~~~~~~~~~---------------------------~~~~-------------------- 144 (342)
T d1yfqa_ 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVK---------------------------NLNS-------------------- 144 (342)
T ss_dssp TTEEEEEETTSEEEEECHHHHTTBCEEEE---------------------------ESCS--------------------
T ss_pred cccccccccccccceeeccccccceeeec---------------------------cccc--------------------
Confidence 78899999999999998765432221110 0000
Q ss_pred cCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccc-eeeccccCceE
Q 007229 420 ALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEE-MVLEKHRGAIT 498 (612)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~i~ 498 (612)
...........+.+++..+++++.|+.|++|++........ .....+...+.
T Consensus 145 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (342)
T d1yfqa_ 145 ---------------------------NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197 (342)
T ss_dssp ---------------------------SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE
T ss_pred ---------------------------ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccccccee
Confidence 00111234566778889999999999999999987654222 22233444555
Q ss_pred EEEEcC-CCcEEEEEcCCCeEEEEecCCcceee--------------ecccccccceeEEEecCCCcEEEEeecCcEEEE
Q 007229 499 VIQYSP-DVSMFASADGNREAIVWDRVSKEVKL--------------NNMLFHTARINCLAWSPSSTMVATGSIDTCVII 563 (612)
Q Consensus 499 ~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~--------------~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~i 563 (612)
+..+.+ ++..+++++.||.+.+|+........ .....|...|++++|+|++++||+|+.||.|++
T Consensus 198 ~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~v 277 (342)
T d1yfqa_ 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277 (342)
T ss_dssp EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred eeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEE
Confidence 555554 77899999999999999986543321 112346778999999999999999999999999
Q ss_pred EEccCCCcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEe
Q 007229 564 YEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRL 609 (612)
Q Consensus 564 wd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~ 609 (612)
||+++ + +++..+..+ ..+..++|+ +++.|++++.|+.+++|..
T Consensus 278 WD~~~-~-~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 278 WNLQT-R-KKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EETTT-T-EEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred EECCC-C-cEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 99998 5 566666432 234456667 7888888888877766654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.98 E-value=1.3e-31 Score=250.23 Aligned_cols=322 Identities=11% Similarity=0.024 Sum_probs=231.6
Q ss_pred EEEECC-CCCEEEEEeCCCCeeeEEEEEec--CCceeeeeccCCceEEEEEEcCCCCEEEEEeecC-CeEEEEeCCCCee
Q 007229 107 DLQWSP-DGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGED-FLVNFYEGPPFKF 182 (612)
Q Consensus 107 ~~~~s~-~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~ 182 (612)
.-.||| ||+++|+++.+. ++.|+ .+..++ + +|...|.+++|+|||++++.++..+ ..|++||.++++.
T Consensus 7 ~~~fSP~dG~~~a~~~~g~------v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSRGQ------AFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEETTE------EEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccCCCCCEEEEEECCe------EEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence 457999 999999988763 55555 444443 3 6999999999999999644444444 3799999998876
Q ss_pred eecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 007229 183 KLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVW 262 (612)
Q Consensus 183 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw 262 (612)
. .+..|...|.+++|+||+++|++++.++.+++|++.+++....+ ..+...+.+++|+|+|++|+.+..++..
T Consensus 79 ~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~la~~~~~~~~--- 151 (360)
T d1k32a3 79 E-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE---RSREAMITDFTISDNSRFIAYGFPLKHG--- 151 (360)
T ss_dssp E-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSSCCCCEEECTTSCEEEEEEEECSS---
T ss_pred E-EeeCCCceEEeeeecccccccceeccccccccccccccceeeee---ecccccccchhhccceeeeeeecccccc---
Confidence 5 56689999999999999999999999999999999999988777 3677888999999999999876533211
Q ss_pred EeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcE
Q 007229 263 EILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT 342 (612)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 342 (612)
T Consensus 152 -------------------------------------------------------------------------------- 151 (360)
T d1k32a3 152 -------------------------------------------------------------------------------- 151 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCC
Q 007229 343 ILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALS 422 (612)
Q Consensus 343 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (612)
.+.+..++.+++|+..+++......
T Consensus 152 ~~~~~~~~~~~v~d~~~~~~~~~~~------------------------------------------------------- 176 (360)
T d1k32a3 152 ETDGYVMQAIHVYDMEGRKIFAATT------------------------------------------------------- 176 (360)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSC-------------------------------------------------------
T ss_pred ceeeccccceeeeccccCceeeecc-------------------------------------------------------
Confidence 0111223456667666554332211
Q ss_pred CCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccc-----cceeeccccCce
Q 007229 423 SPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT-----EEMVLEKHRGAI 497 (612)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~-----~~~~~~~~~~~i 497 (612)
+...+..++|+|||++|++++.++.+.+|+....... ....+..|...+
T Consensus 177 --------------------------~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 230 (360)
T d1k32a3 177 --------------------------ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 230 (360)
T ss_dssp --------------------------SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred --------------------------cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCcc
Confidence 2234677899999999999999999999997654321 112233455556
Q ss_pred EEEEEcCCCcEEEEEcCCC-----eEEEEecCCcceeeecccccccceeEEEecC---CCcEEEEeecCcEEEEEEccCC
Q 007229 498 TVIQYSPDVSMFASADGNR-----EAIVWDRVSKEVKLNNMLFHTARINCLAWSP---SSTMVATGSIDTCVIIYEIGKP 569 (612)
Q Consensus 498 ~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~ 569 (612)
..+.|+|++..++++..+. .+..++...+... .+..+...+..+.+.+ ++.++++++.++.+++||+.+
T Consensus 231 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~- 307 (360)
T d1k32a3 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR--MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT- 307 (360)
T ss_dssp CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE--EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-
T ss_pred ccceECCCcCcccccceeecccccceeecccCcCcee--EeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-
Confidence 6677888888777665432 2334444444432 2333455555555554 445788999999999999987
Q ss_pred CcceeeeecccccCeeeEEEe-cCceEEEccCCCeEEEEEeccC
Q 007229 570 ASSRITIKNAHLGGVYGVAFM-DDFNVVSSGEDACIRVWRLATE 612 (612)
Q Consensus 570 ~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~i~~w~~~~~ 612 (612)
+ + .. .|.+.|.+++|+ |+++|++++.||.|++||++++
T Consensus 308 ~-~-~~---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 308 R-K-VT---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp C-C-EE---EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred C-e-EE---EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 3 2 22 355679999999 9999999999999999999763
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=5e-29 Score=235.45 Aligned_cols=357 Identities=11% Similarity=-0.052 Sum_probs=249.2
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCe--eeeeeccCCccccE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEK--IGEFSSEDGHHGSI 238 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v 238 (612)
.++++.+.+|+|.+||..+++.+..+..+. .+..++|||||+++++++.|+.+++||+.+++. ...+.....|.+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 357999999999999999999999998774 699999999999999999999999999988764 34443333566667
Q ss_pred EEEEEecCCCEE-EEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC
Q 007229 239 YAVSWSPDGKKV-LTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 239 ~~i~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
.+..|+|||++| ++++.++.+++||. .+++++..+........
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~----~t~~~~~~~~~~~~~~~-------------------------------- 155 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDG----ETLEPKKIQSTRGMTYD-------------------------------- 155 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEET----TTCCEEEEEECCEECTT--------------------------------
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeC----ccccceeeeccCCcccc--------------------------------
Confidence 777888999986 66778999999999 88888887765431100
Q ss_pred CCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeece-ecccceEEEEe--eccEEEEecC-CCeEE
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEK-KYDARIKCLAA--VEEVIFTAGF-DNKVW 393 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~-~~~i~ 393 (612)
.....+......+.+++....++++...++.+.+||....+...... .....+..+.+ +++++++++. ++.+.
T Consensus 156 ---~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~ 232 (432)
T d1qksa2 156 ---EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232 (432)
T ss_dssp ---TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred ---ceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEE
Confidence 01112344555666664434566778888999999988776544332 24455666666 5666555554 44677
Q ss_pred EEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEe-cCC
Q 007229 394 RVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGG-QNG 472 (612)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg 472 (612)
+++..+..... ..+.+.. ..+..........+.+...+... .++
T Consensus 233 v~d~~~~~~~~--------------------------------~~~~g~~---~~~~~~~~~~~~~~~g~~~~~~~lg~~ 277 (432)
T d1qksa2 233 VIDTKEGKLVA--------------------------------IEDTGGQ---TPHPGRGANFVHPTFGPVWATSHMGDD 277 (432)
T ss_dssp EEETTTTEEEE--------------------------------EEECSSS---SBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred EeecccceEEE--------------------------------EeccCcc---ccccCcccceecCCCCceecccccCCc
Confidence 77766544220 0000000 00111223334444444444433 377
Q ss_pred eEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE
Q 007229 473 KLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV 552 (612)
Q Consensus 473 ~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 552 (612)
.+.+|+..... ...|...+....++|++..+++++.+...++|+..+.. .|.....++++ ||++.|
T Consensus 278 ~v~~~~~~~~~------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-------~~~~~~~sv~v-pDg~~l 343 (432)
T d1qksa2 278 SVALIGTDPEG------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-------PEAEISGSVAV-FDIKAM 343 (432)
T ss_dssp EEEEEECCTTT------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-------SSHHHHTCEEE-EEGGGC
T ss_pred eEEeccccccc------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-------CCCCeeeEEEE-Eechhh
Confidence 89999865443 34567789999999999999999999999999865433 24444556665 899999
Q ss_pred EEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEe-cCceEEEc-----cCCCeEEEEEecc
Q 007229 553 ATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFM-DDFNVVSS-----GEDACIRVWRLAT 611 (612)
Q Consensus 553 ~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~-----~~d~~i~~w~~~~ 611 (612)
++++.|+.+++|++.+ . ..+..|...|.+++|+ ||++++.+ ..||.|.|||.+|
T Consensus 344 a~~s~d~~~k~w~~~~-~----~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T 403 (432)
T d1qksa2 344 TGDGSDPEFKTLPIAE-W----AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT 403 (432)
T ss_dssp CCSSSCCCEEEECHHH-H----HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred cccccCCceEeccccc-c----cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCC
Confidence 9999999999999866 2 2233577789999999 99887544 2578999999765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=4.1e-28 Score=230.44 Aligned_cols=336 Identities=10% Similarity=-0.007 Sum_probs=221.6
Q ss_pred EcCCCC-EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeee--eecc
Q 007229 155 FKPTRP-FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGE--FSSE 231 (612)
Q Consensus 155 ~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~ 231 (612)
++.+.+ .++++.+.||+|++||+.+++.+.++..|. .+..++|||||++|++++.|+++++||+.+++.... +...
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~ 104 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence 444433 356888999999999999999999998775 589999999999999999999999999999875443 3323
Q ss_pred CCccccEEEEEEecCCCEEEEE-eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEE
Q 007229 232 DGHHGSIYAVSWSPDGKKVLTV-SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISI 310 (612)
Q Consensus 232 ~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 310 (612)
.+|...+.+++|+|||++++++ ..++.+++||. ..+++........
T Consensus 105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~----~~~~~~~~~~~~~----------------------------- 151 (426)
T d1hzua2 105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG----ETLEPKQIVSTRG----------------------------- 151 (426)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET----TTCCEEEEEECCE-----------------------------
T ss_pred CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcC----CccceeEEeeccC-----------------------------
Confidence 3566777788889999987555 47899999999 7777766554332
Q ss_pred EEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCC
Q 007229 311 FSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDN 390 (612)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 390 (612)
..+....+........+..+.|+...++.... .+
T Consensus 152 -----------------~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-----------------------------~~ 185 (426)
T d1hzua2 152 -----------------MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------------------TG 185 (426)
T ss_dssp -----------------ECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------------------TT
T ss_pred -----------------CCccceeecCCCceeEEEECCCCCEEEEecCC-----------------------------CC
Confidence 11112222211122333444444443332221 11
Q ss_pred eEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEec
Q 007229 391 KVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQ 470 (612)
Q Consensus 391 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 470 (612)
.+.+++....... ..........+..++|+|++++++++..
T Consensus 186 ~i~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~a~~ 226 (426)
T d1hzua2 186 KVLLVNYKDIDNL---------------------------------------TVTSIGAAPFLADGGWDSSHRYFMTAAN 226 (426)
T ss_dssp EEEEEECSSSSSC---------------------------------------EEEEEECCSSEEEEEECTTSCEEEEEET
T ss_pred eEEEEEeccccce---------------------------------------eeEEeccCCccEeeeECCCCcEEEeeee
Confidence 1122221111100 1111223345788999999998888764
Q ss_pred -CCeEEEEEccCcccccceeeccccCceEEEEEcCCCc---EEEEEcCCCeEEEEecCCc-------ceeeecccccccc
Q 007229 471 -NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS---MFASADGNREAIVWDRVSK-------EVKLNNMLFHTAR 539 (612)
Q Consensus 471 -dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~ 539 (612)
+..+.+++..+++.........+..+.....+.+++. ..+..+.|+.+.+|+.... +.. ..+.+|...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~-~~l~g~~~~ 305 (426)
T d1hzua2 227 NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV-AELQGQGGG 305 (426)
T ss_dssp TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE-EEEECSSSC
T ss_pred cccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe-EEEecCCCc
Confidence 5579999999888744433333333333344433322 2234456778888876543 333 557789999
Q ss_pred eeEEEecCCCcEEEE-------eecCcEEEEEEccCCCcceeee--------ecccccCeeeEEEe-cCceE-EEc----
Q 007229 540 INCLAWSPSSTMVAT-------GSIDTCVIIYEIGKPASSRITI--------KNAHLGGVYGVAFM-DDFNV-VSS---- 598 (612)
Q Consensus 540 i~~~~~s~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~--------~~~h~~~v~~~~~~-~~~~l-~s~---- 598 (612)
+..++|+||+++|++ ++.|++|+|||+.++. ..... +..|...|.+++|| ||+++ +++
T Consensus 306 v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~-~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~ 384 (426)
T d1hzua2 306 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD-AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 384 (426)
T ss_dssp CCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT-SCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT
T ss_pred eeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC-cCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCC
Confidence 999999999999994 5678899999998833 22221 33566679999999 88876 442
Q ss_pred cCCCeEEEEEecc
Q 007229 599 GEDACIRVWRLAT 611 (612)
Q Consensus 599 ~~d~~i~~w~~~~ 611 (612)
+.|+.|++||.+|
T Consensus 385 ~~~~~i~v~D~~T 397 (426)
T d1hzua2 385 NDSSALVVVDDKT 397 (426)
T ss_dssp TSCCEEEEEETTT
T ss_pred CCCCeEEEEECCC
Confidence 4689999999876
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=5.5e-29 Score=236.49 Aligned_cols=356 Identities=11% Similarity=-0.000 Sum_probs=228.2
Q ss_pred EEECCCCCE--EEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec
Q 007229 108 LQWSPDGLR--IVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS 185 (612)
Q Consensus 108 ~~~s~~~~~--l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 185 (612)
..++.|.+. +++..+++ .+++|+..+++.+.+++.|. .+..++|+|||++ +++++.|++|++||+.+++....
T Consensus 24 ~~~~~d~~~~~~V~~~~dg---~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~-l~~~~~d~~v~vwd~~t~~~~~~ 98 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAG---QIALVDGDSKKIVKVIDTGY-AVHISRMSASGRY-LLVIGRDARIDMIDLWAKEPTKV 98 (426)
T ss_dssp CCSCCCGGGEEEEEETTTT---EEEEEETTTCSEEEEEECCS-SEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCEEE
T ss_pred ccccCCCCeEEEEEEcCCC---EEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCE-EEEEeCCCCEEEEEccCCceeEE
Confidence 346666543 34444555 57888888999999999875 5899999999994 88999999999999998875432
Q ss_pred -----ccccccceEEEEECCCCCeEEEE-EcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE-EEEEeCCCc
Q 007229 186 -----HREHSNFVNCIRFSPDGSKLISV-SSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK-VLTVSADKS 258 (612)
Q Consensus 186 -----~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~ 258 (612)
..+|...+.+++|+|||++|+++ ..++.+++||..+++....+. .+...+....+.+++.. .+..+.|+.
T Consensus 99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~s~d~~ 175 (426)
T d1hzua2 99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS---TRGMTVDTQTYHPEPRVAAIIASHEHP 175 (426)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE---CCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee---ccCCCccceeecCCCceeEEEECCCCC
Confidence 34677778888999999987655 478999999999999887773 55555555666666553 344555666
Q ss_pred EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEec
Q 007229 259 AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKI 338 (612)
Q Consensus 259 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 338 (612)
..++.. ..... +.+++............++...+..+.+.+.
T Consensus 176 ~~~~~~----~~~~~----------------------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (426)
T d1hzua2 176 EFIVNV----KETGK----------------------------------VLLVNYKDIDNLTVTSIGAAPFLADGGWDSS 217 (426)
T ss_dssp EEEEEE----TTTTE----------------------------------EEEEECSSSSSCEEEEEECCSSEEEEEECTT
T ss_pred EEEEec----CCCCe----------------------------------EEEEEeccccceeeEEeccCCccEeeeECCC
Confidence 555554 22111 1112212222222233356667778888854
Q ss_pred CCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceee
Q 007229 339 SQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLS 418 (612)
Q Consensus 339 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (612)
+..++++...+..+.+++..+++........... . ....
T Consensus 218 g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~----------~~~~-- 256 (426)
T d1hzua2 218 HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP-----------------------------H----------PGRG-- 256 (426)
T ss_dssp SCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC-----------------------------C----------CSCC--
T ss_pred CcEEEeeeecccceeeeecccccEEEEeccCCcc-----------------------------c----------ccce--
Confidence 3445555566777888888877665443210000 0 0000
Q ss_pred ecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceE
Q 007229 419 LALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAIT 498 (612)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~ 498 (612)
......+...+.....++++...+.+.....+.+| ..+. ...+.+|...+.
T Consensus 257 ------------------------~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~---~~~~--~~~l~g~~~~v~ 307 (426)
T d1hzua2 257 ------------------------ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKK--VAELQGQGGGSL 307 (426)
T ss_dssp ------------------------EEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT---BTSE--EEEEECSSSCCC
T ss_pred ------------------------eeeecCCCCceEEeccCCCceEEEeeccccccccc---cceE--eEEEecCCCcee
Confidence 00000111223333334444333333333222111 1222 567889999999
Q ss_pred EEEEcCCCcEEEE-------EcCCCeEEEEecCCcceeeec--------ccccccceeEEEecCCCcEEE-Ee----ecC
Q 007229 499 VIQYSPDVSMFAS-------ADGNREAIVWDRVSKEVKLNN--------MLFHTARINCLAWSPSSTMVA-TG----SID 558 (612)
Q Consensus 499 ~~~~s~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~-s~----~~d 558 (612)
.++|+||+++|++ ++.|++|+|||+.+++...+. +..|...|.+++|||||++++ ++ +.+
T Consensus 308 ~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~ 387 (426)
T d1hzua2 308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDS 387 (426)
T ss_dssp CEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSC
T ss_pred EEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCC
Confidence 9999999999994 556889999999998765332 234566799999999999774 32 468
Q ss_pred cEEEEEEccCCCcceeeeecccc
Q 007229 559 TCVIIYEIGKPASSRITIKNAHL 581 (612)
Q Consensus 559 ~~i~iwd~~~~~~~~~~~~~~h~ 581 (612)
+.|+|||..+ . +....+.++.
T Consensus 388 ~~i~v~D~~T-~-k~~~~i~~~~ 408 (426)
T d1hzua2 388 SALVVVDDKT-L-KLKAVVKDPR 408 (426)
T ss_dssp CEEEEEETTT-T-EEEEEECCTT
T ss_pred CeEEEEECCC-C-eEEEEECCCC
Confidence 8999999998 5 6666676654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=2e-23 Score=188.81 Aligned_cols=267 Identities=13% Similarity=0.074 Sum_probs=209.1
Q ss_pred cCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCC
Q 007229 37 NGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGL 115 (612)
Q Consensus 37 ~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 115 (612)
.++.|.+||+++++.++.+... ..+..++|+|||++|+ +++.++.|++||+.+++. ...+..+. .+..++|+++++
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~~~~~~ 86 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAVSPDGK 86 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEECTTSS
T ss_pred CCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-cccccccccccc
Confidence 3789999999999999888644 5578999999999874 667889999999999984 44555444 578999999999
Q ss_pred EEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEE
Q 007229 116 RIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNC 195 (612)
Q Consensus 116 ~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 195 (612)
++++.+.+.. .+.+++..+++....+..+ ....++.|+|++..+++++..++.+.+|+..+.+....+..+ ..+..
T Consensus 87 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 162 (301)
T d1l0qa2 87 QVYVTNMASS--TLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG 162 (301)
T ss_dssp EEEEEETTTT--EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred cccccccccc--eeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceE
Confidence 8888776654 4667777788888877755 456889999999987788888999999999999988877644 45788
Q ss_pred EEECCCCCeEEEEEcC-CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC---CCcEEEEEeecCCCCC
Q 007229 196 IRFSPDGSKLISVSSD-RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA---DKSAKVWEILEDGSGG 271 (612)
Q Consensus 196 ~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~ 271 (612)
++++|+++++++++.+ +.+.+|+....+..... .....+..++|+++++.++++.. ++.|.+||+ .++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~----~t~ 234 (301)
T d1l0qa2 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT----GTN 234 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET----TTT
T ss_pred EEeeccccceeeecccccccccccccceeeeecc----cccCCcceeeccccccccccccccceeeeeeeeec----CCC
Confidence 9999999998888765 56677887777666666 45566788999999998876654 367999999 777
Q ss_pred eeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcE-EEEEecCC
Q 007229 272 RVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQT-ILSSSYDG 350 (612)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg 350 (612)
+.+..+.. ...+..+++++. +++ +++++.++
T Consensus 235 ~~~~~~~~-----------------------------------------------~~~~~~va~spd-g~~l~va~~~~~ 266 (301)
T d1l0qa2 235 KITARIPV-----------------------------------------------GPDPAGIAVTPD-GKKVYVALSFCN 266 (301)
T ss_dssp EEEEEEEC-----------------------------------------------CSSEEEEEECTT-SSEEEEEETTTT
T ss_pred eEEEEEcC-----------------------------------------------CCCEEEEEEeCC-CCEEEEEECCCC
Confidence 77655432 234677888843 555 46788899
Q ss_pred cEEEEEcCCceeeeec
Q 007229 351 AIIKWIRGVGYSSKLE 366 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~ 366 (612)
.|.+||+.+++.....
T Consensus 267 ~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 267 TVSVIDTATNTITATM 282 (301)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCeEEEEE
Confidence 9999999988776544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=9.9e-24 Score=190.80 Aligned_cols=274 Identities=15% Similarity=0.120 Sum_probs=203.2
Q ss_pred EEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEE-EEEcCCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 161 FRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLI-SVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 161 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
|..++++.|++|.+||+++++.+.++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+ .....+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~----~~~~~~~ 77 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----PAGSSPQ 77 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----ECSSSEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee----ecccccc
Confidence 56788899999999999999998887644 4578999999999885 5567899999999999999888 3334578
Q ss_pred EEEEecCCCEEEEE-eCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCC
Q 007229 240 AVSWSPDGKKVLTV-SADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDK 318 (612)
Q Consensus 240 ~i~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 318 (612)
.++|+++++++++. ..++.+.+|+. .+++....+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-------------------------------------- 115 (301)
T d1l0qa2 78 GVAVSPDGKQVYVTNMASSTLSVIDT----TSNTVAGTVKTG-------------------------------------- 115 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEET----TTTEEEEEEECS--------------------------------------
T ss_pred ccccccccccccccccccceeeeccc----ccceeeeecccc--------------------------------------
Confidence 99999999876655 45678999998 666666554322
Q ss_pred CceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecC
Q 007229 319 APLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLC 398 (612)
Q Consensus 319 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~ 398 (612)
.....+.+++.....++++..++.+.+|+..+........
T Consensus 116 ---------~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 155 (301)
T d1l0qa2 116 ---------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS------------------------------- 155 (301)
T ss_dssp ---------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------------
T ss_pred ---------ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc-------------------------------
Confidence 2344566664334455667778888888887765443321
Q ss_pred CCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC-CeEEEE
Q 007229 399 EGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN-GKLHIY 477 (612)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~v~i~ 477 (612)
....+..++++|+++.++++..+ +.+.+|
T Consensus 156 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (301)
T d1l0qa2 156 --------------------------------------------------VGRSPKGIAVTPDGTKVYVANFDSMSISVI 185 (301)
T ss_dssp --------------------------------------------------CCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred --------------------------------------------------cCCCceEEEeeccccceeeecccccccccc
Confidence 12246778999999988887765 567778
Q ss_pred EccCcccccceeeccccCceEEEEEcCCCcEEEEEc---CCCeEEEEecCCcceeeecccccccceeEEEecCCCcEE-E
Q 007229 478 SISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASAD---GNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMV-A 553 (612)
Q Consensus 478 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~ 553 (612)
+...... ..... ....+..++|+++++.++.+. .++.|++||+.+++... .+. +...+.+++|+|||++| +
T Consensus 186 ~~~~~~~--~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~-~~~-~~~~~~~va~spdg~~l~v 260 (301)
T d1l0qa2 186 DTVTNSV--IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RIP-VGPDPAGIAVTPDGKKVYV 260 (301)
T ss_dssp ETTTTEE--EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-EEE-CCSSEEEEEECTTSSEEEE
T ss_pred cccceee--eeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE-EEc-CCCCEEEEEEeCCCCEEEE
Confidence 7776654 23232 345578899999999887654 34689999999998763 344 34568999999999987 5
Q ss_pred EeecCcEEEEEEccCCCcceeeeec
Q 007229 554 TGSIDTCVIIYEIGKPASSRITIKN 578 (612)
Q Consensus 554 s~~~d~~i~iwd~~~~~~~~~~~~~ 578 (612)
+++.|+.|++||+++ + +.+..+.
T Consensus 261 a~~~~~~i~v~D~~t-~-~~~~~~~ 283 (301)
T d1l0qa2 261 ALSFCNTVSVIDTAT-N-TITATMA 283 (301)
T ss_dssp EETTTTEEEEEETTT-T-EEEEEEE
T ss_pred EECCCCeEEEEECCC-C-eEEEEEe
Confidence 777899999999998 5 5555553
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=1.1e-24 Score=201.61 Aligned_cols=313 Identities=7% Similarity=-0.047 Sum_probs=216.4
Q ss_pred EEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc
Q 007229 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 186 (612)
++|++++++|++++.++ .+.+|+.++++.+.+++ .|...+.+++|+|||+++++++..++.|++||+.+++.+..+
T Consensus 2 ~a~~~~~~~l~~~~~~~---~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPN---NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CCCCTTCEEEEEEETTT---EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCCCCCcEEEEEcCCC---EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence 57899999999999998 57888888999999887 456678899999999987788889999999999999888765
Q ss_pred ccc------ccceEEEEECCCCCeEEEEE------------cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCC
Q 007229 187 REH------SNFVNCIRFSPDGSKLISVS------------SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGK 248 (612)
Q Consensus 187 ~~~------~~~v~~~~~s~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 248 (612)
... ...+..++|+|||+++++++ .++.+.+|+..+++....+... .....+..+.++++++
T Consensus 79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS 157 (346)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC
T ss_pred cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee-eccCceEEEEecCCCE
Confidence 432 23466899999999998775 3677899998887766555321 2233455666777776
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc
Q 007229 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK 328 (612)
Q Consensus 249 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 328 (612)
.++. ++.+.+|++ .+++.+..+.....
T Consensus 158 ~~~~---~~~~~~~~~----~~~~~~~~~~~~~~---------------------------------------------- 184 (346)
T d1jmxb_ 158 LYVA---GPDIYKMDV----KTGKYTVALPLRNW---------------------------------------------- 184 (346)
T ss_dssp EEEE---SSSEEEECT----TTCCEEEEECSTTC----------------------------------------------
T ss_pred EEEe---CCcceEEEc----cCCCEEEEEecCCC----------------------------------------------
Confidence 5543 246888988 66666655443210
Q ss_pred ceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCcccee
Q 007229 329 NVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHI 408 (612)
Q Consensus 329 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 408 (612)
...+.+++......+....++.+.+++
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 211 (346)
T d1jmxb_ 185 -NRKGYSAPDVLYFWPHQSPRHEFSMLY---------------------------------------------------- 211 (346)
T ss_dssp -CCTTBCCCBCCCCCCCCCTTCEEEEEE----------------------------------------------------
T ss_pred -ccceEEeccccEEEEEecCCCceEeee----------------------------------------------------
Confidence 000011110011111122222222221
Q ss_pred ccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccce
Q 007229 409 DVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM 488 (612)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~ 488 (612)
....+.+....++++..++.+.+|+..++... ..
T Consensus 212 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 245 (346)
T d1jmxb_ 212 ---------------------------------------------TIARFKDDKQDPATADLLYGYLSVDLKTGKTH-TQ 245 (346)
T ss_dssp ---------------------------------------------EEEEC-------CCCEEEEEEEEEETTTCCEE-EE
T ss_pred ---------------------------------------------eeeeeccCceeEeeccCCceEEEEECCCCceE-EE
Confidence 11122234445566667778999999887752 34
Q ss_pred eeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 489 VLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
....|...+..+.+++++.+++.... +.|++||+.+++.+... . +...+.+++|+|||++|++++.|+.|++||.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~-~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 246 EFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAA-N-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEE-E-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred EeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEE-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 45567788999999999988887765 57999999999887433 3 455799999999999999999999999999998
Q ss_pred CCcceeeeecccc
Q 007229 569 PASSRITIKNAHL 581 (612)
Q Consensus 569 ~~~~~~~~~~~h~ 581 (612)
. +.+..+..+.
T Consensus 323 -~-~~i~~i~~p~ 333 (346)
T d1jmxb_ 323 -L-EKVKNIKLPG 333 (346)
T ss_dssp -T-EEEEEEECSS
T ss_pred -C-CEEEEEECCC
Confidence 6 6776666443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=6.4e-25 Score=203.18 Aligned_cols=312 Identities=11% Similarity=-0.017 Sum_probs=215.4
Q ss_pred EEEccCCCEEEEec-CCEEEEEeCCCCceeeEec-cCCCceEEEEECCCCCEE-EEeeCcCeEEEeecCCCceeeeeeee
Q 007229 24 ISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPNGEWI-ASADVSGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 24 ~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l-as~~~d~~i~iwd~~~~~~~~~~~~~ 100 (612)
++|++++++|++++ ++.|.+||+++++.++.+. .|...+.+++|+|||++| +++..++.|.+||+.+++.+. .+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~-~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee-eecc
Confidence 57899999999998 7999999999999998876 567778999999999987 556688999999999997433 3322
Q ss_pred c------CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 101 L------SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 101 ~------~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
. ...+..++|+|||+++++++.+... . .......++.+.+
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~------~----------------------------~~~~~~~~~~i~~ 126 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQR------L----------------------------NDHYVVKPPRLEV 126 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEE------C----------------------------SSCEEECCCEEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcc------e----------------------------eeeeccCcceEEE
Confidence 1 1245678899999888776544310 0 0112334677889
Q ss_pred EeCCCCeeeeccccc--ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 175 YEGPPFKFKLSHREH--SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 175 wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
|+..+++....+..+ ...+..+.+++++..+++ ++.+.+|++.+++....+ ........+.++|++..++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 199 (346)
T d1jmxb_ 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVAL----PLRNWNRKGYSAPDVLYFWP 199 (346)
T ss_dssp EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEE----CSTTCCCTTBCCCBCCCCCC
T ss_pred EecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEE----ecCCCccceEEeccccEEEE
Confidence 998887766655433 244666777888765553 356999999999998887 34445566778888876654
Q ss_pred Ee-CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccccee
Q 007229 253 VS-ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVS 331 (612)
Q Consensus 253 ~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~ 331 (612)
.. .++.+.+++.. ... ......+..+.....+.+|+.............+...+.
T Consensus 200 ~~~~~~~~~~~~~~----~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (346)
T d1jmxb_ 200 HQSPRHEFSMLYTI----ARF--------------------KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255 (346)
T ss_dssp CCCTTCEEEEEEEE----EEC---------------------------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred EecCCCceEeeeee----eee--------------------ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeE
Confidence 43 34555555541 000 001122333444566788887776666666677777788
Q ss_pred EEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccC
Q 007229 332 TLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG 411 (612)
Q Consensus 332 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 411 (612)
.+.+++.+. .++... ++.+.+||..+++.....
T Consensus 256 ~~~~~~~~~-~~~~~~-~~~v~v~d~~~~~~~~~~--------------------------------------------- 288 (346)
T d1jmxb_ 256 TGLRSPKDP-NQIYGV-LNRLAKYDLKQRKLIKAA--------------------------------------------- 288 (346)
T ss_dssp EEEECSSCT-TEEEEE-ESEEEEEETTTTEEEEEE---------------------------------------------
T ss_pred EEEEeCCCC-EEEEec-CCeEEEEECCCCcEEEEE---------------------------------------------
Confidence 777774333 344333 357888887766543322
Q ss_pred CCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCccc
Q 007229 412 SQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTL 484 (612)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~ 484 (612)
.....+.+++|+|||++|++++.||.|++||.++++.
T Consensus 289 ------------------------------------~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 289 ------------------------------------NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325 (346)
T ss_dssp ------------------------------------ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred ------------------------------------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCE
Confidence 1223578899999999999999999999999999887
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=5.3e-22 Score=185.22 Aligned_cols=324 Identities=12% Similarity=0.010 Sum_probs=225.3
Q ss_pred CCCCceeEEEEccCCCEEEEec------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------C
Q 007229 16 TERGRGILISGNPKTDTILYCN------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------V 79 (612)
Q Consensus 16 ~~~~~v~~~~~s~d~~~l~~~~------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~ 79 (612)
...+.+..++++|||+.+++.. .+.|.+||.++++.+..+..+... .++|||||++|++++ .
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence 3566788999999999998763 357999999999999988776554 799999999999874 4
Q ss_pred cCeEEEeecCCCceeeeeeeecCCCe-------EEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEE
Q 007229 80 SGSVRIWGTHNGFVLKNEFKVLSGRI-------DDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLS 152 (612)
Q Consensus 80 d~~i~iwd~~~~~~~~~~~~~~~~~i-------~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~ 152 (612)
++.|.+||..+++. ...+..+.... ..+.|++|++.++....+... .+.++.....+... +.....+
T Consensus 96 ~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~ 169 (373)
T d2madh_ 96 TDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP-AVGLVVQGGSSDDQ----LLSSPTC 169 (373)
T ss_pred ceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC-ceEEeeccCCeEEE----Eecccee
Confidence 67899999999984 34444444332 457889999887766544322 23444444544433 3334678
Q ss_pred EEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc------ccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeee
Q 007229 153 CEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH------SNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIG 226 (612)
Q Consensus 153 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 226 (612)
+.|+|+++.++++.+.|+.+.+|+...++.......+ ......+.+.+++.+ +..+.++.+.+|+...+....
T Consensus 170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 248 (373)
T d2madh_ 170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEE
Confidence 8999999988899999999999999988776654322 223445566666654 455678999999988776543
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCC
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGG 306 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (612)
.... ..+........+.|.+...+..+.|+....+-.
T Consensus 249 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------------------------------------ 285 (373)
T d2madh_ 249 KAPI-DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT------------------------------------------ 285 (373)
T ss_pred EEee-ccccCcEEeeeeccCcceeeEEecCCCeEEEec------------------------------------------
Confidence 3321 234444555566665555555555554333221
Q ss_pred EEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEe
Q 007229 307 IISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTA 386 (612)
Q Consensus 307 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 386 (612)
..+..++....++.+.+||..+++....
T Consensus 286 -------------------------------~~~~~~~~~~~~~~v~~~d~~t~~~~~~--------------------- 313 (373)
T d2madh_ 286 -------------------------------SEQSAWKLHAAAKEVTSVTGLVGQTSSQ--------------------- 313 (373)
T ss_pred -------------------------------CCCceEEeecCCCeEEEEECCCCcEEEE---------------------
Confidence 0145566666777888888776554322
Q ss_pred cCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCe--
Q 007229 387 GFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSE-- 464 (612)
Q Consensus 387 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-- 464 (612)
+.+...+..++|+|||+.
T Consensus 314 ------------------------------------------------------------~~~~~~~~~~a~spDG~~~l 333 (373)
T d2madh_ 314 ------------------------------------------------------------ISLGHDVDAISVAQDGGPDL 333 (373)
T ss_pred ------------------------------------------------------------ecCCCCeeEEEECCCCCEEE
Confidence 223345788999999984
Q ss_pred EEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCC
Q 007229 465 AIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPD 505 (612)
Q Consensus 465 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (612)
+++++.|+.|++||+.+++. ...+..+....+.+++.++
T Consensus 334 ~vt~~~d~~v~v~D~~tg~~--~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 334 YALSAGTEVLHIYDAGAGDQ--DQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEeCCCCeEEEEECCCCCE--EEEECCCCCCCcEEEEecC
Confidence 46788999999999999987 6778777777788877654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=2.7e-23 Score=191.34 Aligned_cols=295 Identities=13% Similarity=0.042 Sum_probs=198.4
Q ss_pred CEEEEEeCCCCeeeEEEEEecCCceeeeecc--CCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccc--
Q 007229 115 LRIVACGDGKGKSFVRAFMWDSGTTVGDFDG--HSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHS-- 190 (612)
Q Consensus 115 ~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-- 190 (612)
+++++++.++ .+.+|+..+++.+..++. +...+.+++|+|||++++++++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~---~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPD---KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTT---EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCC---EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence 4788888887 578888889999988865 445688999999999767888899999999999999888766543
Q ss_pred ---cceEEEEECCCCCeEEEEEc------------CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC
Q 007229 191 ---NFVNCIRFSPDGSKLISVSS------------DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA 255 (612)
Q Consensus 191 ---~~v~~~~~s~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 255 (612)
..+..++|+|++++++++.. +..+.+||..+++....+ .+...+..++|+|+|+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~ 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF----EAPRQITMLAWARDGSKLYGLGR 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE----ECCSSCCCEEECTTSSCEEEESS
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec----cccCCceEEEEcCCCCEEEEEcC
Confidence 34567999999999988763 577899999999988888 45566888999999999998864
Q ss_pred CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEE
Q 007229 256 DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTA 335 (612)
Q Consensus 256 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (612)
.+.+||. .+++....+........... .... ........+.........
T Consensus 155 --~~~~~d~----~~~~~~~~~~~~~~~~~~~~----~~~~---------------------~~~~~~~~~~~~~~~~~~ 203 (337)
T d1pbyb_ 155 --DLHVMDP----EAGTLVEDKPIQSWEAETYA----QPDV---------------------LAVWNQHESSGVMATPFY 203 (337)
T ss_dssp --SEEEEET----TTTEEEEEECSTTTTTTTBC----CCBC---------------------CCCCCCCTTTTEEEEEEE
T ss_pred --Ccceeee----ecCcEEEEeecCCcccccee----cCCc---------------------ceeeccccccceeeeeee
Confidence 4788999 78877776654431110000 0000 000000000000000000
Q ss_pred E-ecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCc
Q 007229 336 L-KISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQP 414 (612)
Q Consensus 336 ~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 414 (612)
. .........+..++ .+.+|+..++...
T Consensus 204 ~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~----------- 232 (337)
T d1pbyb_ 204 TARKDIDPADPTAYRT----------------------------------------GLLTMDLETGEMA----------- 232 (337)
T ss_dssp EEBTTSCTTSGGGEEE----------------------------------------EEEEEETTTCCEE-----------
T ss_pred eeeeccceeeecccCc----------------------------------------cEEEEEcCCCcEE-----------
Confidence 0 00011111112222 3334443332211
Q ss_pred ceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeecccc
Q 007229 415 LDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHR 494 (612)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~ 494 (612)
......+...+..++++|++.+++.+ ++.+++||+.+++. ...+ .+.
T Consensus 233 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~--~~~~-~~~ 279 (337)
T d1pbyb_ 233 ----------------------------MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS--IKRV-PLP 279 (337)
T ss_dssp ----------------------------EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE--EEEE-ECS
T ss_pred ----------------------------EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcE--EEEE-cCC
Confidence 00011123456778899999988765 57899999999887 3333 355
Q ss_pred CceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeee
Q 007229 495 GAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLN 531 (612)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 531 (612)
..+.+++|+|||++|++++.|++|++||+++.+.+..
T Consensus 280 ~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 6789999999999999999999999999999988643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=2.3e-23 Score=191.85 Aligned_cols=300 Identities=10% Similarity=-0.006 Sum_probs=200.2
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccc--cccceEEEEECCCCCeEE-EEEcCCcEEEEecCCCCeeeeeeccC--Cccc
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHRE--HSNFVNCIRFSPDGSKLI-SVSSDRKGLIYDGKSGEKIGEFSSED--GHHG 236 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~ 236 (612)
.+++++.|+.|++||+++++.+..+.. +...+.+++|+|||++++ +++.++.|.+||+.+++.+..+.... .+..
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence 499999999999999999999988754 345678999999999885 55678999999999999988774321 1223
Q ss_pred cEEEEEEecCCCEEEEEeCC------------CcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEc
Q 007229 237 SIYAVSWSPDGKKVLTVSAD------------KSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSL 304 (612)
Q Consensus 237 ~v~~i~~~~~~~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (612)
.+..++|+|++++++++..+ ..+.+||. .+++....+.
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~-------------------------- 132 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA----ETLSRRKAFE-------------------------- 132 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET----TTTEEEEEEE--------------------------
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccc----cCCeEEEecc--------------------------
Confidence 45578999999999888654 34444554 3443333322
Q ss_pred CCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEE
Q 007229 305 GGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIF 384 (612)
Q Consensus 305 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 384 (612)
+...+..+++++ +++++++++. .+.+||..+++.......+..
T Consensus 133 ---------------------~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~------------- 175 (337)
T d1pbyb_ 133 ---------------------APRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW------------- 175 (337)
T ss_dssp ---------------------CCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTT-------------
T ss_pred ---------------------ccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCc-------------
Confidence 223455666663 2677777654 467788877665443221100
Q ss_pred EecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCe
Q 007229 385 TAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSE 464 (612)
Q Consensus 385 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 464 (612)
.....+.+++..+....... ............+...
T Consensus 176 -----------------------------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 211 (337)
T d1pbyb_ 176 -----------------------------EAETYAQPDVLAVWNQHESS---------------GVMATPFYTARKDIDP 211 (337)
T ss_dssp -----------------------------TTTTBCCCBCCCCCCCCTTT---------------TEEEEEEEEEBTTSCT
T ss_pred -----------------------------cccceecCCcceeecccccc---------------ceeeeeeeeeeeccce
Confidence 00001111110000000000 0011222233344444
Q ss_pred EEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEE
Q 007229 465 AIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLA 544 (612)
Q Consensus 465 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 544 (612)
...+..++.+.+|+..++... ...+..+...+..++++|++.+++.+ ++.+++||+.+++.+.. +. +...+.+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~-~~-~~~~~~~~~ 286 (337)
T d1pbyb_ 212 ADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR-VP-LPHSYYSVN 286 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE-EE-CSSCCCEEE
T ss_pred eeecccCccEEEEEcCCCcEE-EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEE-Ec-CCCCEEEEE
Confidence 555566778999999888753 33455677788999999999998876 57899999999998744 33 567789999
Q ss_pred ecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc
Q 007229 545 WSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA 579 (612)
Q Consensus 545 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 579 (612)
|+|||++|++++.|+.|++||.++ . +.+..+..
T Consensus 287 ~s~dG~~l~v~~~~~~i~v~D~~t-~-~~v~~i~~ 319 (337)
T d1pbyb_ 287 VSTDGSTVWLGGALGDLAAYDAET-L-EKKGQVDL 319 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTT-C-CEEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCC-C-cEEEEEEC
Confidence 999999999999999999999998 5 56665543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.92 E-value=1.1e-21 Score=183.16 Aligned_cols=338 Identities=10% Similarity=-0.019 Sum_probs=221.0
Q ss_pred eccCCCceEEEEECCCCCEEEEe-----eCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeE
Q 007229 55 YGEHGYPVTVARYSPNGEWIASA-----DVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFV 129 (612)
Q Consensus 55 ~~~h~~~v~~~~~s~d~~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i 129 (612)
...+..++..++++|||+.++.. +..+.|.+||..+++. ...+..+.. ..++|+|||++|++++....
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-~~~~~~~~~--~~~a~SpDG~~l~va~~~~~---- 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-LGHVNGGFL--PNPVAAHSGSEFALASTSFS---- 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-EEEEeCCCC--ccEEEcCCCCEEEEEeecCC----
Confidence 34688899999999999998764 2446799999999984 445554443 37999999999998876542
Q ss_pred EEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccce-------EEEEECCCC
Q 007229 130 RAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFV-------NCIRFSPDG 202 (612)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v-------~~~~~s~~~ 202 (612)
....+..++.|.+||..+++.+..+..+.... ..+.|++++
T Consensus 89 --------------------------------~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 136 (373)
T d2madh_ 89 --------------------------------RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred --------------------------------cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC
Confidence 36667778899999999999887766555433 457889999
Q ss_pred CeEEEEEc--CCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEE-EEEeCCCcEEEEEeecCCCCCeeEeeeec
Q 007229 203 SKLISVSS--DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKV-LTVSADKSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 203 ~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
+.++.... ++.+.+|+....+..... ....++.++|+++.+ ++.+.|+.+.+|+. ..++.......
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~----~~~~~~~~~~~ 205 (373)
T d2madh_ 137 ADLLFFQFAAGPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDH----AGGAAGAGLVG 205 (373)
T ss_pred CcEEEEEEcCCCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCeEEEEEc----CCceeeEEEee
Confidence 87766543 567889998877665444 335678899998765 57788999999998 66655544332
Q ss_pred cCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCC
Q 007229 280 STSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGV 359 (612)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 359 (612)
.... .+.........+.. ...++..+.++.+.+|+...
T Consensus 206 ~~~~----------------------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 206 AMLT----------------------------------------AAQNLLTQPAQANK--SGRIVWPVYSGKILQADISA 243 (373)
T ss_pred eccc----------------------------------------cCccceeeeEEECC--CceEEEecCCceEEEEEcCC
Confidence 2100 00111111122222 45566666788888888776
Q ss_pred ceeeeecee--cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEE
Q 007229 360 GYSSKLEKK--YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVIL 437 (612)
Q Consensus 360 ~~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (612)
......... .........+ .+.....+++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~d~-------------- 278 (373)
T d2madh_ 244 AGATNKAPIDALSGGRKADTW-------------------------------RPGGWQQVAYLKSS-------------- 278 (373)
T ss_pred CeEEEEEeeccccCcEEeeee-------------------------------ccCcceeeEEecCC--------------
Confidence 543322110 0000000000 00001111111111
Q ss_pred eecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcE--EEEEcCC
Q 007229 438 LDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSM--FASADGN 515 (612)
Q Consensus 438 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~d 515 (612)
-....+.+++..++....++.+.+||..+++. ...+ .+...+..++|+|||+. +++++.|
T Consensus 279 ---------------~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~--~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d 340 (373)
T d2madh_ 279 ---------------DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQI-SLGHDVDAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred ---------------CeEEEecCCCceEEeecCCCeEEEEECCCCcE--EEEe-cCCCCeeEEEECCCCCEEEEEEeCCC
Confidence 11122344555666777888999999998876 3333 35567899999999984 4688999
Q ss_pred CeEEEEecCCcceeeecccccccceeEEEecCC
Q 007229 516 REAIVWDRVSKEVKLNNMLFHTARINCLAWSPS 548 (612)
Q Consensus 516 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~ 548 (612)
++|++||+.+++.+ ..+..+....+.+++.++
T Consensus 341 ~~v~v~D~~tg~~~-~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 341 EVLHIYDAGAGDQD-QSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CeEEEEECCCCCEE-EEECCCCCCCcEEEEecC
Confidence 99999999999987 556667777788877654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.7e-21 Score=180.47 Aligned_cols=231 Identities=11% Similarity=0.036 Sum_probs=158.7
Q ss_pred EEEccCCCEEEEec------CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------CcCeEEEee
Q 007229 24 ISGNPKTDTILYCN------GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VSGSVRIWG 87 (612)
Q Consensus 24 ~~~s~d~~~l~~~~------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d~~i~iwd 87 (612)
.+.+|||+.+++.. .+.|.+||..+++.+..+..+... .++|||||++|++++ .|+.|++||
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence 45689999997753 357999999999999888766544 799999999887643 478999999
Q ss_pred cCCCceeeeeeeecCC-------CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCce-------EEEE
Q 007229 88 THNGFVLKNEFKVLSG-------RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRR-------VLSC 153 (612)
Q Consensus 88 ~~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------v~~~ 153 (612)
..+++. ...+..+.. ....++|+|++++++++...... .+.+++..+++.+..+..+... ...+
T Consensus 85 ~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d2bbkh_ 85 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP-AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162 (355)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC-EEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred CCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc-eeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence 999984 334443322 34568999999999887654432 4667777788888877655432 2346
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCC
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDG 233 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 233 (612)
.+++++..+++....++.+.+++...... .+...+....+.+++..++.++.++.+++|++..++...... ...
T Consensus 163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~ 236 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-VEA 236 (355)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC-EES
T ss_pred EEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEec-cCC
Confidence 77777776555666666677766555432 233445566788888889999999999999998776533221 113
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+........+.|++...+..+.|+...++..
T Consensus 237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~ 267 (355)
T d2bbkh_ 237 LTEAERADGWRPGGWQQVAYHRALDRIYLLV 267 (355)
T ss_dssp SCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred cccceEeeeeeccceEEEEEeCCCCeEEEEe
Confidence 3333334456666666666666666555543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=2.4e-21 Score=179.50 Aligned_cols=305 Identities=13% Similarity=0.042 Sum_probs=199.3
Q ss_pred EEEEcCCCCEEEEEe----ecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cCCcEEEE
Q 007229 152 SCEFKPTRPFRIATC----GEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SDRKGLIY 217 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~----~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~vw 217 (612)
-.+.+||++.++++. ..+..|.+||..+++.+.++..+..+ .++|||||++|++++ .|+.|++|
T Consensus 6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~ 83 (355)
T d2bbkh_ 6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF 83 (355)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence 345689999644443 34567999999999998888765444 799999999888653 47899999
Q ss_pred ecCCCCeeeeeeccCCc----cccEEEEEEecCCCEEEEEe--CCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 218 DGKSGEKIGEFSSEDGH----HGSIYAVSWSPDGKKVLTVS--ADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 218 d~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
|+.+++....+.....+ ......++|+|++++++++. .+..+.+|+. .+++.+..+......
T Consensus 84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------- 151 (355)
T d2bbkh_ 84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL----EGKAFKRMLDVPDCY-------- 151 (355)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET----TTTEEEEEEECCSEE--------
T ss_pred ECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeec----CCCcEeeEEecCCcc--------
Confidence 99999988876432222 12235689999999888775 4567899998 777777665433200
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceeccc
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDA 371 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 371 (612)
...... ....+..+.||....+......
T Consensus 152 ----------------------------------------~~~~~~--~~~~~~~~~dg~~~~v~~~~~~---------- 179 (355)
T d2bbkh_ 152 ----------------------------------------HIFPTA--PDTFFMHCRDGSLAKVAFGTEG---------- 179 (355)
T ss_dssp ----------------------------------------EEEEEE--TTEEEEEETTSCEEEEECCSSS----------
T ss_pred ----------------------------------------eEeecC--CcceEEEcCCCCEEEEEecCCC----------
Confidence 000001 3334444455554444332211
Q ss_pred ceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccc
Q 007229 372 RIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGF 451 (612)
Q Consensus 372 ~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (612)
.+..++....... ...
T Consensus 180 -------------------~~~~~~~~~~~~~---------------------------------------------~~~ 195 (355)
T d2bbkh_ 180 -------------------TPEITHTEVFHPE---------------------------------------------DEF 195 (355)
T ss_dssp -------------------CCEEEECCCCSCT---------------------------------------------TSC
T ss_pred -------------------eEEEEecccccce---------------------------------------------ecc
Confidence 1111111111100 111
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccc----------cCceEEEEEcCCCcEEEEEcCC------
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKH----------RGAITVIQYSPDVSMFASADGN------ 515 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~d------ 515 (612)
.+....+++++..++.++.++.+++|++..+..........+ ......++++|++..++....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~ 275 (355)
T d2bbkh_ 196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 275 (355)
T ss_dssp BCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred eeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence 233456777788888889999999999988765322222211 1234568899999888766543
Q ss_pred ----CeEEEEecCCcceeeecccccccceeEEEecCCCc--EEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEE
Q 007229 516 ----REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST--MVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAF 589 (612)
Q Consensus 516 ----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 589 (612)
..|.+||..+++.+. .+. +...+.+++|+|||+ ++++++.|+.|++||.++ + +.+..+.++......+.+
T Consensus 276 ~~~~~~v~v~d~~t~~~~~-~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t-g-~~~~~i~~~G~~p~~i~~ 351 (355)
T d2bbkh_ 276 KTASRFVVVLDAKTGERLA-KFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-G-EELRSVNQLGHGPQVITT 351 (355)
T ss_dssp TSCEEEEEEEETTTCCEEE-EEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT-C-CEEEEECCCCSSCCEEEC
T ss_pred cCCCCeEEEEeCCCCcEEE-Eec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC-C-CEEEEEeCcCCCccEEEe
Confidence 479999999998763 333 456789999999998 456777899999999998 6 677777766555555544
Q ss_pred e
Q 007229 590 M 590 (612)
Q Consensus 590 ~ 590 (612)
.
T Consensus 352 ~ 352 (355)
T d2bbkh_ 352 A 352 (355)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.7e-19 Score=163.87 Aligned_cols=288 Identities=11% Similarity=0.035 Sum_probs=176.5
Q ss_pred EEEEeecCCeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccE
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSI 238 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v 238 (612)
++++++.|++|++|++.....+.. ...|.+.+..|+|+|||++|++++. |+.|++|++........+.....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 568888999999999876543332 2367889999999999999976665 8999999998765443332222344567
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcCCEEEEEEcCCCC
Q 007229 239 YAVSWSPDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLGGIISIFSASNLD 317 (612)
Q Consensus 239 ~~i~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 317 (612)
..++|+|||++|++++. ++.+.+|+. ...........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~----~~~~~~~~~~~-------------------------------------- 123 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRL----EDGLPVGVVDV-------------------------------------- 123 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEE----ETTEEEEEEEE--------------------------------------
T ss_pred eEEEEcCCCCEEeecccCCCceeeecc----ccccceecccc--------------------------------------
Confidence 78999999999999875 668899988 44433332221
Q ss_pred CCceeecCcccceeEEEEEecCCcEEE-EEecCCcEEEEEcCCceeeeece------ecccceEEEEe--eccEEE-Eec
Q 007229 318 KAPLSFSGHVKNVSTLTALKISQQTIL-SSSYDGAIIKWIRGVGYSSKLEK------KYDARIKCLAA--VEEVIF-TAG 387 (612)
Q Consensus 318 ~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~------~~~~~i~~~~~--~~~~l~-~~~ 387 (612)
..+...+.++.+++. ++.++ ....+..+.+|+........... ........+.+ ++..++ +..
T Consensus 124 ------~~~~~~~~~v~~s~d-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~ 196 (333)
T d1ri6a_ 124 ------VEGLDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 196 (333)
T ss_dssp ------ECCCTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred ------cCCCccceEEEeeec-ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc
Confidence 123334455556633 44444 44455678888876644332111 13344456666 344443 344
Q ss_pred CCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEE
Q 007229 388 FDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIV 467 (612)
Q Consensus 388 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 467 (612)
..+...+++.............. ... ............+++++|++++++
T Consensus 197 ~~~~~~v~~~~~~~~~~~~~~~~-------~~~-----------------------~~~~~~~~~~~~~~~s~d~~~~~~ 246 (333)
T d1ri6a_ 197 LNSSVDVWELKDPHGNIECVQTL-------DMM-----------------------PENFSDTRWAADIHITPDGRHLYA 246 (333)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEE-------ECS-----------------------CTTCCSCCCEEEEEECTTSSEEEE
T ss_pred ccCceEEEeecccccceeeeeee-------eee-----------------------ecCCCccccceeEEEecccCceee
Confidence 55566666654433210000000 000 000112234667899999997766
Q ss_pred E-ecCCeEEEEEccCcccc-cceeeccccCceEEEEEcCCCcEEEEEc-CCCeEEEEec--CCcce
Q 007229 468 G-GQNGKLHIYSISGNTLT-EEMVLEKHRGAITVIQYSPDVSMFASAD-GNREAIVWDR--VSKEV 528 (612)
Q Consensus 468 ~-~~dg~v~i~d~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~iwd~--~~~~~ 528 (612)
. ..++.+.+|++...... ...........+..++|+|||++|++++ .++.|++|++ +++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 247 CDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred ecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 5 45678999998754331 1122223445678899999999887765 4689999954 56654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.4e-18 Score=158.93 Aligned_cols=226 Identities=10% Similarity=0.058 Sum_probs=157.6
Q ss_pred cCCEEEEEeCCCCceeeEe--ccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCceeee--eeeecCCCeEEEEEC
Q 007229 37 NGRSVLIRYLDKPLHVEFY--GEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKN--EFKVLSGRIDDLQWS 111 (612)
Q Consensus 37 ~~~~i~i~~~~~~~~~~~~--~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~s 111 (612)
.+++|++|++++...+..+ ..|.+.|..++|||||++|+++ ..|+.|++|++........ ....+...+..++|+
T Consensus 12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s 91 (333)
T d1ri6a_ 12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD 91 (333)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC
T ss_pred CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc
Confidence 3799999999765433333 3688999999999999999655 4689999999986653221 223345568889999
Q ss_pred CCCCEEEEEeCCCCeeeEEEEEecCCcee--eeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec----
Q 007229 112 PDGLRIVACGDGKGKSFVRAFMWDSGTTV--GDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS---- 185 (612)
Q Consensus 112 ~~~~~l~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---- 185 (612)
|||++|++++.+.. .+.++.++..... .....+...+.++.|+|++++++.....+..|.+|+.........
T Consensus 92 pDg~~l~v~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (333)
T d1ri6a_ 92 HQGQFVFVGSYNAG--NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 169 (333)
T ss_dssp TTSSEEEEEETTTT--EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred CCCCEEeecccCCC--ceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence 99999999987654 3566666654433 334567777889999999997666666778899999766433221
Q ss_pred --ccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeee----ee---eccCCccccEEEEEEecCCCEEEEEe-
Q 007229 186 --HREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIG----EF---SSEDGHHGSIYAVSWSPDGKKVLTVS- 254 (612)
Q Consensus 186 --~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~----~~---~~~~~~~~~v~~i~~~~~~~~l~~~~- 254 (612)
..........++|++++.+++.... .+...+|+........ .. ............+++++++++++...
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~ 249 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 249 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence 1123455688999999998876654 5667788765433211 11 11112345667889999999776654
Q ss_pred CCCcEEEEEe
Q 007229 255 ADKSAKVWEI 264 (612)
Q Consensus 255 ~dg~i~iw~~ 264 (612)
.++.+.+|++
T Consensus 250 ~~~~~~~~~~ 259 (333)
T d1ri6a_ 250 TASLITVFSV 259 (333)
T ss_dssp TTTEEEEEEE
T ss_pred cCCeEEEEEE
Confidence 4678999998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=3.5e-18 Score=163.98 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=106.0
Q ss_pred eeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEecc-----CCCceEEEEECCCCCEEEEeeC---------cCeEEEe
Q 007229 21 GILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGE-----HGYPVTVARYSPNGEWIASADV---------SGSVRIW 86 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~las~~~---------d~~i~iw 86 (612)
-..+.|.+|++++ +-.++.+.+||+.+++....+.. |...|.++.|||||++||.++. ++.+.||
T Consensus 19 ~~~~~W~~d~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 19 LYSLRWISDHEYL-YKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCCEECSSSEEE-EESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccCCEeCCCCEEE-EEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 3467899999765 45678899999999988765544 4578999999999999998753 5678999
Q ss_pred ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccC------------------Cc
Q 007229 87 GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGH------------------SR 148 (612)
Q Consensus 87 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~------------------~~ 148 (612)
|+.+++ + ..+..+...+..+.|||||+++|...+.. +.++...+++..+....+ .+
T Consensus 98 d~~~~~-~-~~l~~~~~~~~~~~~SPDG~~ia~~~~~~----l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~ 171 (470)
T d2bgra1 98 DLNKRQ-L-ITEERIPNNTQWVTWSPVGHKLAYVWNND----IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (470)
T ss_dssp ETTTTE-E-CCSSCCCTTEEEEEECSSTTCEEEEETTE----EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred ECCCCc-c-cccccCCccccccccccCcceeeEeeccc----ceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence 999986 3 46778889999999999999999987664 334444456554433221 12
Q ss_pred eEEEEEEcCCCCEEEEEeecC-CeEEEEe
Q 007229 149 RVLSCEFKPTRPFRIATCGED-FLVNFYE 176 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d-~~i~~wd 176 (612)
....+.|||||++ |+....| ..+..|.
T Consensus 172 ~~~~~~wSPDGk~-ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 172 AYSALWWSPNGTF-LAYAQFNDTEVPLIE 199 (470)
T ss_dssp SSBCEEECTTSSE-EEEEEEECTTCCEEE
T ss_pred CccccEECCCCCc-cceeEecCCcCceEE
Confidence 2345678888885 5555443 3244443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.78 E-value=6.2e-17 Score=155.21 Aligned_cols=159 Identities=15% Similarity=0.156 Sum_probs=112.5
Q ss_pred EEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee-----eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCc
Q 007229 64 VARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF-----KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGT 138 (612)
Q Consensus 64 ~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~ 138 (612)
.+.|.+|++++.. .|+.+.+||+.+++.. ..+ ..|...|.++.|||||++|+.+++.. .
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~-----~-------- 84 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSS-VFLENSTFDEFGHSINDYSISPDGQFILLEYNYV-----K-------- 84 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEE-EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE-----E--------
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEE-EEEchhhhhhccCccceeEECCCCCEEEEEECCc-----c--------
Confidence 5789999998764 4788999999999842 222 23345677888888888777655321 0
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
+.--+.++.+.+||+.+++. ..+..+...+..+.|||||+++|.. .++.+++|+
T Consensus 85 ------------------------~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~ 138 (470)
T d2bgra1 85 ------------------------QWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKI 138 (470)
T ss_dssp ------------------------CSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEES
T ss_pred ------------------------eeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEE
Confidence 11112356789999999875 4577888999999999999999985 478899999
Q ss_pred cCCCCeeeeeeccC---------------CccccEEEEEEecCCCEEEEEeCCCc-EEEEEe
Q 007229 219 GKSGEKIGEFSSED---------------GHHGSIYAVSWSPDGKKVLTVSADKS-AKVWEI 264 (612)
Q Consensus 219 ~~~~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~l~~~~~dg~-i~iw~~ 264 (612)
..+++......... ...+....+.|+|||++|+....|.+ +..|.+
T Consensus 139 ~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred CCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 99887765442100 01223456789999999999876543 555555
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.75 E-value=1.3e-17 Score=151.16 Aligned_cols=341 Identities=10% Similarity=-0.017 Sum_probs=206.2
Q ss_pred EEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEE
Q 007229 74 IASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSC 153 (612)
Q Consensus 74 las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~ 153 (612)
++|++.+|+|+||++.+++.+. .+. .|+|++.... +..+... ++ +..+........|.......
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~-~Ip---------Vfspd~~~g~-g~~~es~---~v--l~~~~~~~~gd~hhP~~s~t 77 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELM-RIP---------VFNVDSATGW-GITNESK---EI--LGGDQQYLNGDCHHPHISMT 77 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEE-EEC---------SSSBCTTTCT-TTSHHHH---HH--HCSSSCCSCCCBCCCEEEEE
T ss_pred EEeCCCCCcEEEEeCCCCcEEE-EEE---------eEcCCCCEEE-EECCccc---eE--EecccccccCcccCCCccee
Confidence 5577899999999999998543 332 3888876422 1111100 01 11122222234466667777
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc-ccccceEEEEECCCCCe--EEEEEcCC-----------------c
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR-EHSNFVNCIRFSPDGSK--LISVSSDR-----------------K 213 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~--l~~~~~dg-----------------~ 213 (612)
.++|||++++++...+..|.++|+.+++....+. .+...+..++|+|+|+. ++..+++. .
T Consensus 78 ~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~ 157 (441)
T d1qnia2 78 DGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM 157 (441)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred cccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence 7899999988888899999999999999877654 35678999999999984 44444332 2
Q ss_pred EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCC-cEEEEEeecCCCCCeeEeeeeccCccccceeeeee
Q 007229 214 GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADK-SAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGC 292 (612)
Q Consensus 214 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (612)
+..+|..+.+...++. -.+....+.|+|+|+++++.+.+. .+..++. .+.+....+.
T Consensus 158 ~~~iD~~t~~v~~qI~----v~~~p~~v~~spdGk~a~vt~~nse~~~~id~----~t~~~~d~i~-------------- 215 (441)
T d1qnia2 158 FTAIDAETMDVAWQVI----VDGNLDNTDADYTGKYATSTCYNSERAVDLAG----TMRNDRDWVV-------------- 215 (441)
T ss_dssp EEEEETTTCSEEEEEE----ESSCCCCEEECSSSSEEEEEESCTTCCSSHHH----HTCSSBCEEE--------------
T ss_pred EEeecCccceeeEEEe----cCCCccceEECCCCCEEEEEecCCCceEEEec----cCcceEEEEE--------------
Confidence 3558888888877773 334577899999999999887653 2222222 1111111100
Q ss_pred eccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccc
Q 007229 293 LWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDAR 372 (612)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 372 (612)
+.+.. ..+.+. ++++++.. +.++.+.+++.....
T Consensus 216 -----------------v~n~p----------------~~~~~~-~dGk~~~v-~~~~v~vvd~~~~~~----------- 249 (441)
T d1qnia2 216 -----------------VFNVE----------------RIAAAV-KAGNFKTI-GDSKVPVVDGRGESE----------- 249 (441)
T ss_dssp -----------------EEEHH----------------HHHHHH-HTTCCBCC-TTCCCCEEECSSSCS-----------
T ss_pred -----------------eCCcc----------------ceEEEe-cCCCEEEe-CCCCcEEEEcccCCc-----------
Confidence 00000 000001 11222211 122333333222111
Q ss_pred eEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccce
Q 007229 373 IKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFT 452 (612)
Q Consensus 373 i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (612)
.+..++....
T Consensus 250 ----------------------------------------------------------------------v~~~IPvgks 259 (441)
T d1qnia2 250 ----------------------------------------------------------------------FTRYIPVPKN 259 (441)
T ss_dssp ----------------------------------------------------------------------SEEEECCBSS
T ss_pred ----------------------------------------------------------------------eEEEEeCCCC
Confidence 1222222334
Q ss_pred EEEEEEccCCCeEEE-EecCCeEEEEEccCccc------ccceeecccc---CceEEEEEcCCCcEEEEEcCCCeEEEEe
Q 007229 453 VTACAIAPDGSEAIV-GGQNGKLHIYSISGNTL------TEEMVLEKHR---GAITVIQYSPDVSMFASADGNREAIVWD 522 (612)
Q Consensus 453 i~~~~~s~~~~~l~~-~~~dg~v~i~d~~~~~~------~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~d~~i~iwd 522 (612)
...+.++|||+++++ +..+++|.+||+++... .....+.++. -.....+|.++|..+.+...|.+|..|+
T Consensus 260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~ 339 (441)
T d1qnia2 260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN 339 (441)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEec
Confidence 567899999998755 66789999999875321 1111111111 1234468999999999999999999999
Q ss_pred cCCc---------ceeeec-----ccccccceeEEEecCCCcEEEEe---ecCc----------EEEEEEccC
Q 007229 523 RVSK---------EVKLNN-----MLFHTARINCLAWSPSSTMVATG---SIDT----------CVIIYEIGK 568 (612)
Q Consensus 523 ~~~~---------~~~~~~-----~~~~~~~i~~~~~s~~~~~l~s~---~~d~----------~i~iwd~~~ 568 (612)
+... ..+... ..+|...+.+..++|||++|+++ +.|+ +-.+.|+..
T Consensus 340 ~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~ 412 (441)
T d1qnia2 340 IADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISG 412 (441)
T ss_dssp HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSS
T ss_pred cchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecC
Confidence 7421 112122 25788889999999999999999 5554 456777765
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=9.5e-16 Score=141.60 Aligned_cols=299 Identities=7% Similarity=-0.124 Sum_probs=184.0
Q ss_pred CCceEEEEEEcCCCCEEEEE--eecCC--eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE----------cC
Q 007229 146 HSRRVLSCEFKPTRPFRIAT--CGEDF--LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS----------SD 211 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~--~~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d 211 (612)
+.++...++..++++...++ ...++ .+.+||..+++.+..+..+..+ .++|+|||+.|++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 34444555667777743333 34444 4667799999998887766654 589999999998765 36
Q ss_pred CcEEEEecCCCCeeeeeeccCC----ccccEEEEEEecCCCEEEEEe-CCCcEEEEEeecCCCCCeeEeeeeccCccccc
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDG----HHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEILEDGSGGRVIKTFASSTSNAVE 286 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 286 (612)
+.|.+||..+++....+..... .......++|+|||++++++. .++.+.+||+ .+++....+......
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~----~~~~~~~~~~~~~~~--- 168 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV----PGASDDQLTKSASCF--- 168 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEE----TTTEEEEEEECSSCC---
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEEC----CCCcEeEEeeccCcc---
Confidence 7799999999999887743211 112234689999999998876 5689999999 888877765443200
Q ss_pred eeeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeec
Q 007229 287 DMLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 366 (612)
. ..+.....++..+.||.+.+++..........
T Consensus 169 ------------------------------------------~-----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~ 201 (368)
T d1mdah_ 169 ------------------------------------------H-----IHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp ------------------------------------------C-----CEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred ------------------------------------------e-----EccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence 0 01111556667777888777776543321111
Q ss_pred eecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeecccceee
Q 007229 367 KKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKVMSK 446 (612)
Q Consensus 367 ~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (612)
. . ....
T Consensus 202 ~-----------------------------~-~~~~-------------------------------------------- 207 (368)
T d1mdah_ 202 V-----------------------------G-AQCT-------------------------------------------- 207 (368)
T ss_dssp C-----------------------------C-CCSC--------------------------------------------
T ss_pred e-----------------------------e-cccc--------------------------------------------
Confidence 0 0 0000
Q ss_pred ecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeec----------cccCceEEEEEcCCCcEEEEEcCC-
Q 007229 447 IDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLE----------KHRGAITVIQYSPDVSMFASADGN- 515 (612)
Q Consensus 447 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~d- 515 (612)
..+...+....+.+++..+.. .++.+++++...+......... ........++++|++..++....+
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~ 285 (368)
T d1mdah_ 208 GAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp TTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred cccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence 000011223444555444332 2344555555443321111111 111223457889988877654322
Q ss_pred --------CeEEEEecCCcceeeecccccccceeEEEecCCCcE--EEEeecCcEEEEEEccCCCcceeeeeccc
Q 007229 516 --------REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTM--VATGSIDTCVIIYEIGKPASSRITIKNAH 580 (612)
Q Consensus 516 --------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~h 580 (612)
..|.+||..+++.+. .+. +...+.+++|+|||+. ++++..|+.|++||..+ + +.+..+...
T Consensus 286 ~~~~~~~~~~v~v~D~~t~~~~~-~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-g-k~~~~i~~g 356 (368)
T d1mdah_ 286 SRSCLAAAENTSSVTASVGQTSG-PIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-D-QDQSSVELD 356 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCCEEE-CCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-C-EEEEECCCC
T ss_pred CceeecCCceEEEEECCCCcEeE-Eec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-C-CEEEEEECC
Confidence 369999999998763 343 4567899999999973 46777899999999998 6 666666543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=1.2e-15 Score=140.80 Aligned_cols=252 Identities=6% Similarity=-0.034 Sum_probs=166.7
Q ss_pred CCCceeEEEEccCCCEE--EEec----CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee----------Cc
Q 007229 17 ERGRGILISGNPKTDTI--LYCN----GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD----------VS 80 (612)
Q Consensus 17 ~~~~v~~~~~s~d~~~l--~~~~----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~----------~d 80 (612)
..+....++.++|++.. +... ...|.+||..+++.+..+.++... .++|+|||++|++++ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 34555666778888864 3322 246888899999999888877655 589999999998754 47
Q ss_pred CeEEEeecCCCceeeeeeeecCC-------CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCce----
Q 007229 81 GSVRIWGTHNGFVLKNEFKVLSG-------RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRR---- 149 (612)
Q Consensus 81 ~~i~iwd~~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~---- 149 (612)
+.|.+||..+++.+ ..+..+.. ....++|+|||++|+++..+.. .+.+|+..+++.+..+..+...
T Consensus 96 ~~v~v~D~~t~~~~-~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~--~v~~~d~~~~~~~~~~~~~~~~~~~~ 172 (368)
T d1mdah_ 96 DYVEVFDPVTFLPI-ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS--AAAGLSVPGASDDQLTKSASCFHIHP 172 (368)
T ss_dssp EEEEEECTTTCCEE-EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS--CEEEEEETTTEEEEEEECSSCCCCEE
T ss_pred CeEEEEECCCCcEe-eeecCCccceecccCCccceEECCCCCEEEEEeCCCC--eEEEEECCCCcEeEEeeccCcceEcc
Confidence 78999999999843 34443322 2346899999999998865443 3667777788888777654432
Q ss_pred ---EEEEEEcCCCCEEEEEee-----------------------------------cCCeEEEEeCCCCeeeec--ccc-
Q 007229 150 ---VLSCEFKPTRPFRIATCG-----------------------------------EDFLVNFYEGPPFKFKLS--HRE- 188 (612)
Q Consensus 150 ---v~~~~~~~~~~~~l~~~~-----------------------------------~d~~i~~wd~~~~~~~~~--~~~- 188 (612)
...+++++++...++... ..+.+.+++......... ...
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSS
T ss_pred CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccc
Confidence 233455555552222111 111222223222221110 000
Q ss_pred ---------cccceEEEEECCCCCeEEEEEcC---------CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCE-
Q 007229 189 ---------HSNFVNCIRFSPDGSKLISVSSD---------RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKK- 249 (612)
Q Consensus 189 ---------~~~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~- 249 (612)
.......++++|++..++....+ ..|.+||..+++.+..+ .+...+.+++|+|||+.
T Consensus 253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~----~~~~~~~~~a~spDG~~~ 328 (368)
T d1mdah_ 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI----SNGHDSDAIIAAQDGASD 328 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC----EEEEEECEEEECCSSSCE
T ss_pred cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe----cCCCceeEEEECCCCCEE
Confidence 01123457788888877665432 35889999999998888 55677899999999973
Q ss_pred -EEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 250 -VLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 250 -l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
++++..++.|++||. .+++.+..+....
T Consensus 329 ly~s~~~~~~v~v~D~----~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 329 NYANSAGTEVLDIYDA----ASDQDQSSVELDK 357 (368)
T ss_dssp EEEEETTTTEEEEEES----SSCEEEEECCCCS
T ss_pred EEEEeCCCCeEEEEEC----CCCCEEEEEECCC
Confidence 455667899999999 9999998887543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.66 E-value=1.5e-16 Score=144.13 Aligned_cols=139 Identities=12% Similarity=0.006 Sum_probs=96.1
Q ss_pred EEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEE-EEcCCCeEEEEecCCcceeeeccc
Q 007229 456 CAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFA-SADGNREAIVWDRVSKEVKLNNML 534 (612)
Q Consensus 456 ~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~ 534 (612)
++++|+|+++.+++ ++.+.+++....+. ...++..+. ...+.++|||++++ ++..+++|.+||+++.........
T Consensus 223 ~~~~~dGk~~~v~~-~~v~vvd~~~~~~v--~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~ 298 (441)
T d1qnia2 223 AAAVKAGNFKTIGD-SKVPVVDGRGESEF--TRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI 298 (441)
T ss_dssp HHHHHTTCCBCCTT-CCCCEEECSSSCSS--EEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred EEEecCCCEEEeCC-CCcEEEEcccCCce--EEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence 35678888876643 56777777665554 455555544 46789999999875 567899999999876443211111
Q ss_pred cccc----------ceeEEEecCCCcEEEEeecCcEEEEEEccCC--------Ccceeee-----ecccccCeeeEEEe-
Q 007229 535 FHTA----------RINCLAWSPSSTMVATGSIDTCVIIYEIGKP--------ASSRITI-----KNAHLGGVYGVAFM- 590 (612)
Q Consensus 535 ~~~~----------~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~-----~~~h~~~v~~~~~~- 590 (612)
.+.. .....+|.++|..+.+.+.|..|..|++... ....+.. ..+|...+.+.+|+
T Consensus 299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p 378 (441)
T d1qnia2 299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA 378 (441)
T ss_dssp CGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred CcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC
Confidence 1111 1344689999998899999999999998520 1012222 26888888899999
Q ss_pred cCceEEEc
Q 007229 591 DDFNVVSS 598 (612)
Q Consensus 591 ~~~~l~s~ 598 (612)
||++|+++
T Consensus 379 dGk~l~s~ 386 (441)
T d1qnia2 379 DGKWLVVL 386 (441)
T ss_dssp CCCEEEEE
T ss_pred CCcEEEec
Confidence 99999999
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.53 E-value=1e-11 Score=112.95 Aligned_cols=243 Identities=10% Similarity=-0.018 Sum_probs=153.3
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec--cCCCceEEEEECCCCCE--EEEee-CcCeEEEeecCCCce-
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG--EHGYPVTVARYSPNGEW--IASAD-VSGSVRIWGTHNGFV- 93 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~--las~~-~d~~i~iwd~~~~~~- 93 (612)
.+..|+|+||+++|.++..+.+..|.+.....+..+. ........++++++++. ++++. ..+.|..+.+.....
T Consensus 41 ~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~ 120 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCc
Confidence 4567999999999998888888888776432222222 22345667899999984 44432 235555544322111
Q ss_pred -----------eeeee----eecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC-Ccee--ee--eccCCceEEEE
Q 007229 94 -----------LKNEF----KVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS-GTTV--GD--FDGHSRRVLSC 153 (612)
Q Consensus 94 -----------~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~-~~~~--~~--~~~~~~~v~~~ 153 (612)
+.... ......+.+++|+|||++++++...... +.++.++. +... .. ..........+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~--v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i 198 (365)
T d1jofa_ 121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK--LWTHRKLASGEVELVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE--EEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred ceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCE--EEEEEccCCCceeeccceeecCCCCceEEE
Confidence 11111 1122357899999999999998766553 55555553 3222 11 12345678999
Q ss_pred EEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc-------------------cccccceEEEEECCCCCeEEEEEc-C--
Q 007229 154 EFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH-------------------REHSNFVNCIRFSPDGSKLISVSS-D-- 211 (612)
Q Consensus 154 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-------------------~~~~~~v~~~~~s~~~~~l~~~~~-d-- 211 (612)
+|+|+++++.++...+++|.+|+.......... ..+......+.++|||++|+++.. +
T Consensus 199 ~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~ 278 (365)
T d1jofa_ 199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF 278 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred EECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC
Confidence 999999987788888999999997665322110 012234567899999999988754 2
Q ss_pred ---CcEEEEecCCCCeeeeee---ccCCccccEEEEEEec-CCCEEEEEe-CCCcEEEEEe
Q 007229 212 ---RKGLIYDGKSGEKIGEFS---SEDGHHGSIYAVSWSP-DGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 212 ---g~i~vwd~~~~~~~~~~~---~~~~~~~~v~~i~~~~-~~~~l~~~~-~dg~i~iw~~ 264 (612)
..|..|++.....+.... ...........++++| +|++|+++. .++.|.+|++
T Consensus 279 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred ccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence 237777765543332211 1112334567799998 899887775 5689999998
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=9.5e-12 Score=108.76 Aligned_cols=220 Identities=13% Similarity=0.118 Sum_probs=147.7
Q ss_pred CCceeEEEEccCCCEEEEecC----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-cCeEEEeecCCCc
Q 007229 18 RGRGILISGNPKTDTILYCNG----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-SGSVRIWGTHNGF 92 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-d~~i~iwd~~~~~ 92 (612)
.+.+.+.+|||||+.||+... ..+.+.+..++.... +..+........|||||+.++.... ++...++......
T Consensus 38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~ 116 (269)
T d2hqsa1 38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 116 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-EeeeecccccceecCCCCeeeEeeecCCccceeeccccc
Confidence 345678999999999999862 478888888776554 5668888999999999999887653 3333333333322
Q ss_pred eeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeE
Q 007229 93 VLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLV 172 (612)
Q Consensus 93 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 172 (612)
.................++++++.+...+...+...+.....+.+ ....+..+........|+|++..++......+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 195 (269)
T d2hqsa1 117 GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 195 (269)
T ss_dssp CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred ccceeeeeccccccccccccccccceecccccCCceEeeeecccc-cceeeecccccccccccccccceeEEEeecCCce
Confidence 223334445556667788999888777765544323333333333 3344555677888899999999766666666555
Q ss_pred EEE--eCCCCeeeecccccccceEEEEECCCCCeEEEEEcC---CcEEEEecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 173 NFY--EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD---RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 173 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
.+| +...+.. .+..+........|||||++|+..+.. ..|.++++..+...... ...+.+...+|+|
T Consensus 196 ~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt----~~~g~~~~p~WSP 267 (269)
T d2hqsa1 196 HIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP----ATDGQVKFPAWSP 267 (269)
T ss_dssp EEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC----CSSSEEEEEEECC
T ss_pred eeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEe----CCCCcEEeEEeCC
Confidence 555 4544443 333445566788999999999876653 46889998876654443 4566788889998
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.1e-10 Score=101.90 Aligned_cols=215 Identities=14% Similarity=0.055 Sum_probs=143.4
Q ss_pred EEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcC---eEEEeecCCCceeeeeeeecCCCeEEEEECCCCCE
Q 007229 40 SVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSG---SVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLR 116 (612)
Q Consensus 40 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 116 (612)
.|.|.|.+...... +..+...+...+|||||+.||...... .+.+.+...+. ...+..+.+......|+|+|+.
T Consensus 20 ~l~i~d~dG~~~~~-l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSCEE-EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCcEE-EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence 68888988655544 555678889999999999999764332 46666666664 3466778889999999999999
Q ss_pred EEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe--EEEEeCCCCeeeecccccccceE
Q 007229 117 IVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL--VNFYEGPPFKFKLSHREHSNFVN 194 (612)
Q Consensus 117 l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~ 194 (612)
++......+...+..+.. ...................+++++...+++...++. |...++..+.... +..+.....
T Consensus 97 i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~ 174 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDL-ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQ 174 (269)
T ss_dssp EEEEECTTSSCEEEEEET-TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEE
T ss_pred eeEeeecCCccceeeccc-ccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eeccccccc
Confidence 998876554422222222 233333334455555666788888866777666664 5555666654333 334566778
Q ss_pred EEEECCCCCeEEEEEcCC-c--EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC---CcEEEEEe
Q 007229 195 CIRFSPDGSKLISVSSDR-K--GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD---KSAKVWEI 264 (612)
Q Consensus 195 ~~~~s~~~~~l~~~~~dg-~--i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~i~iw~~ 264 (612)
...|+|+++.++..+.++ . +.+.+...+.. ... ..........|+|||+.|+..+.. ..|.++++
T Consensus 175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~ 245 (269)
T d2hqsa1 175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 245 (269)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred ccccccccceeEEEeecCCceeeeEeecccccc-eEe----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 889999999988776654 3 44555544443 222 344556778999999998866543 35777777
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=1e-10 Score=100.74 Aligned_cols=246 Identities=9% Similarity=-0.106 Sum_probs=158.0
Q ss_pred eeeccCCCCCCCceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEE
Q 007229 8 ETYACAPSTERGRGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRI 85 (612)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~i 85 (612)
+++|..-..++.....++++++|+..++.. .+.+..++..+........+-......++++++|++.++....+.+++
T Consensus 3 ~~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 3 TVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL 82 (260)
T ss_dssp EECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred eEEecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeee
Confidence 344544445566778999999999766654 467777766654333322222345678999999998888777777777
Q ss_pred eecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCC-ceeeee-ccCCceEEEEEEcCCCCEEE
Q 007229 86 WGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSG-TTVGDF-DGHSRRVLSCEFKPTRPFRI 163 (612)
Q Consensus 86 wd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l 163 (612)
++-.+...+ ...........+++.++++.+++-.... ++...+.. .....+ .........+++.|+++ ++
T Consensus 83 ~~~~~~~~~--~~~~~~~~p~~iavd~~g~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~ 154 (260)
T d1rwia_ 83 AAGSNNQTV--LPFDGLNYPEGLAVDTQGAVYVADRGNN-----RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY 154 (260)
T ss_dssp CTTCSCCEE--CCCCSCCSEEEEEECTTCCEEEEEGGGT-----EEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EE
T ss_pred eeeccceee--eeeeeeeecccccccccceeEeeccccc-----cccccccccceeeeeeecccCCcceeeecCCCC-Ee
Confidence 766555422 1122235678999999998776544333 34445532 222222 12234557899999998 68
Q ss_pred EEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEE
Q 007229 164 ATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSW 243 (612)
Q Consensus 164 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 243 (612)
++...++.|..++...................+++.++|+++++....+.|..++..... ...+. ...-.....|++
T Consensus 155 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~--~~~~~~P~~i~~ 231 (260)
T d1rwia_ 155 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLP--FTGLNTPLAVAV 231 (260)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECC--CCSCCCEEEEEE
T ss_pred eeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEc--cCCCCCeEEEEE
Confidence 888888899999987655444333444567899999999877776667888888865433 22221 123346789999
Q ss_pred ecCCCEEEEEeCCCcEEEEEe
Q 007229 244 SPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 244 ~~~~~~l~~~~~dg~i~iw~~ 264 (612)
+++|+.+++-..+++|+.++.
T Consensus 232 d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 232 DSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CTTCCEEEEEGGGTEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEeC
Confidence 999987776566666665553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6.7e-10 Score=103.92 Aligned_cols=252 Identities=12% Similarity=0.082 Sum_probs=147.5
Q ss_pred eEeeeeeccCCCCCCCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccC---CCceEEEEECCCCCEEEEee--
Q 007229 4 VHLSETYACAPSTERGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEH---GYPVTVARYSPNGEWIASAD-- 78 (612)
Q Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~s~d~~~las~~-- 78 (612)
++++.++........ ....|.+++.++....++.|.+||+.+++....+..+ ...+....||||+++|+...
T Consensus 5 ~tle~~~~~~~~~~~---~~~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~ 81 (465)
T d1xfda1 5 VTVEDLFSEDFKIHD---PEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNV 81 (465)
T ss_dssp CCHHHHTCTTTCCCC---CCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESC
T ss_pred eeHHHHhCCccccCC---CCCEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcc
Confidence 345555544333222 2346889998876666889999999988775555443 34677889999999988763
Q ss_pred -------CcCeEEEeecCCCceeeee--eeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeeeec-cC
Q 007229 79 -------VSGSVRIWGTHNGFVLKNE--FKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGDFD-GH 146 (612)
Q Consensus 79 -------~d~~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~~~-~~ 146 (612)
..+.+.++|+.++.. ... .......+....|||||+.||.....+ +|..+ .+..++... +.
T Consensus 82 ~~~~r~s~~~~~~i~d~~~~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~n------l~~~~~~~~~~~~lt~~g~ 154 (465)
T d1xfda1 82 EPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENN------IYYCAHVGKQAIRVVSTGK 154 (465)
T ss_dssp CCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTE------EEEESSSSSCCEEEECCCB
T ss_pred cceeEeeccccEEEEEccCCce-eeccCccCCccccceeeeccCCceEEEEecce------EEEEecCCCceEEEecccC
Confidence 357789999998863 212 112334566789999999999988764 55554 333333222 11
Q ss_pred Cce-----------------EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE
Q 007229 147 SRR-----------------VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 147 ~~~-----------------v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
... -.++.|||||++++..--.+..|..+.+.... ......+..+.+-.-|..-.
T Consensus 155 ~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~np--- 226 (465)
T d1xfda1 155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSENP--- 226 (465)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSCCC---
T ss_pred cceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccc-----ccccceeeeeeccccCCCCC---
Confidence 111 14677999999744444344555555432210 01111233333322222111
Q ss_pred cCCcEEEEecCCCCeeeeeecc---CCccccEEEEEEecCCCEEEEEeC-C---CcEEEEEeecCCCCCeeEeeee
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSE---DGHHGSIYAVSWSPDGKKVLTVSA-D---KSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~-d---g~i~iw~~~~~~~~~~~~~~~~ 278 (612)
...+.++|++++......... ......+..+.|+|+++.++.... + ..+.++|. .+++....+.
T Consensus 227 -~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~----~tg~~~~~~~ 297 (465)
T d1xfda1 227 -SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA----TTGVCTKKHE 297 (465)
T ss_dssp -EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET----TTCCEEEEEE
T ss_pred -ceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcC----CCCcEEEEEE
Confidence 124778888766543322111 122335778999999986665433 2 24667777 6676655544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.38 E-value=1e-09 Score=99.48 Aligned_cols=207 Identities=11% Similarity=0.076 Sum_probs=124.3
Q ss_pred cCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeee-eeecCCCeEEEEECCCCCEEE--EEeCCCCee------
Q 007229 57 EHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNE-FKVLSGRIDDLQWSPDGLRIV--ACGDGKGKS------ 127 (612)
Q Consensus 57 ~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~--~~~~~~~~~------ 127 (612)
.....+.-|+|+||+++|.++.. +.+..|.+.....+... ..........++++++++.+. ++.......
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 34556778999999999988754 57888887754333222 223345667889999998543 332222110
Q ss_pred ----eEEEEEec-CCce---eee-eccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCC-Ceeee--c--ccccccce
Q 007229 128 ----FVRAFMWD-SGTT---VGD-FDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPP-FKFKL--S--HREHSNFV 193 (612)
Q Consensus 128 ----~i~i~~~~-~~~~---~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~--~--~~~~~~~v 193 (612)
...+...+ .++. ... -......+.++.|+|+|++++++......|.+|+... +.... . ........
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP 195 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence 11111111 1111 100 1112234789999999998666666667888887543 22221 1 12234578
Q ss_pred EEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeee-----c-----------cCCccccEEEEEEecCCCEEEEEeC-
Q 007229 194 NCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFS-----S-----------EDGHHGSIYAVSWSPDGKKVLTVSA- 255 (612)
Q Consensus 194 ~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~-----~-----------~~~~~~~v~~i~~~~~~~~l~~~~~- 255 (612)
..++|+|+++++++..+ +++|.+|++..++...... . ..........+.++|||++|+++..
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 99999999998876665 7889999987664322110 0 0122234668899999999988743
Q ss_pred C-----CcEEEEEe
Q 007229 256 D-----KSAKVWEI 264 (612)
Q Consensus 256 d-----g~i~iw~~ 264 (612)
+ +.|..|++
T Consensus 276 ~~~~~~~~i~~~~~ 289 (365)
T d1jofa_ 276 NKFELQGYIAGFKL 289 (365)
T ss_dssp SSTTSCCEEEEEEE
T ss_pred CCCccceEEEEEEe
Confidence 1 23666666
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.36 E-value=4.7e-10 Score=99.11 Aligned_cols=226 Identities=9% Similarity=-0.068 Sum_probs=151.6
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeee
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEF 98 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~ 98 (612)
.+..++++|||+++++.. +++|..++... + ...+......+.+++|+|||+++++...++.+.+|+..........+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 467899999999888877 78998888664 3 33355677889999999999999998888888888876554322223
Q ss_pred ee--cCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--CCceeee----------eccCCceEEEEEEcCCCCEEEE
Q 007229 99 KV--LSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--SGTTVGD----------FDGHSRRVLSCEFKPTRPFRIA 164 (612)
Q Consensus 99 ~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~ 164 (612)
.. .......+++.++++++++..... .+|.++ .+..... ..........+.+.. .++++
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~ 179 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRG-----AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYV 179 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTT-----EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEE
T ss_pred cccCCccccceeEEccCCCEEeeccccc-----cceeeeccCCcceeEecCCccceeeccCcccccccccccC--Cceee
Confidence 22 345688999999998887766554 355554 2221111 111223345566654 45788
Q ss_pred EeecCCeEEEEeCCCCeeeecc--cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEE
Q 007229 165 TCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVS 242 (612)
Q Consensus 165 ~~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~ 242 (612)
+.+..+.|..++.......... .........+++.++|++.++...++.|..++.. ++........ ..-...++++
T Consensus 180 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~-~~~~~pt~va 257 (302)
T d2p4oa1 180 SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVA 257 (302)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEE
T ss_pred ecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecC-CCCCCceEEE
Confidence 8888899998887654433221 1223446779999999977777778999999865 4433322111 2335578999
Q ss_pred E---ecCCCEEEEEeCC
Q 007229 243 W---SPDGKKVLTVSAD 256 (612)
Q Consensus 243 ~---~~~~~~l~~~~~d 256 (612)
| .+|++.|++++..
T Consensus 258 fg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 258 FGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECCSTTTTTEEEEEECT
T ss_pred EcCCCCCCCEEEEECCC
Confidence 9 6688888776544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.34 E-value=1.3e-09 Score=96.16 Aligned_cols=240 Identities=11% Similarity=0.035 Sum_probs=158.0
Q ss_pred eeEEEEccCCCEEEEec--------CCEEEEEeCCCCceeeEeccC----CCceEEEEECCCCCEEEEeeCcCeEEEeec
Q 007229 21 GILISGNPKTDTILYCN--------GRSVLIRYLDKPLHVEFYGEH----GYPVTVARYSPNGEWIASADVSGSVRIWGT 88 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~--------~~~i~i~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~las~~~d~~i~iwd~ 88 (612)
.-.++|.|||++.++.. +++|..||.+++......... ...-..++|.++|+.|++++..+.|...|.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 34689999999887754 257889999888765443322 223568999999998888877777888888
Q ss_pred CCCceeeeeeeecCC----CeEEEEECCCCCEEEEEeCCC----------CeeeEEEEEecCCceeeeeccCCceEEEEE
Q 007229 89 HNGFVLKNEFKVLSG----RIDDLQWSPDGLRIVACGDGK----------GKSFVRAFMWDSGTTVGDFDGHSRRVLSCE 154 (612)
Q Consensus 89 ~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~ 154 (612)
....... ......+ ..+.+++.++|...++-.... ....-.+|.++.......+.........++
T Consensus 100 ~g~~~~~-~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~ 178 (314)
T d1pjxa_ 100 DGTFEEI-AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIA 178 (314)
T ss_dssp TSCEEEC-CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEE
T ss_pred CCcEEEE-EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeE
Confidence 7664211 1111111 357899999998887643211 001235666663222223333333456789
Q ss_pred EcCCCC----EEEEEeecCCeEEEEeCCCCeeee------cccc-cccceEEEEECCCCCeEEEEEcCCcEEEEecCCCC
Q 007229 155 FKPTRP----FRIATCGEDFLVNFYEGPPFKFKL------SHRE-HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGE 223 (612)
Q Consensus 155 ~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~~------~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 223 (612)
|+|+++ ++.++-+..+.|..|++.....+. .+.+ .......|++.++|++.++....+.|.+||.+.++
T Consensus 179 ~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 179 VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred ECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE
Confidence 988764 456666778889988865332221 1211 22346789999999977777778999999988887
Q ss_pred eeeeeeccCCccccEEEEEEecCCCEE-EEEeCCCcEEEEEe
Q 007229 224 KIGEFSSEDGHHGSIYAVSWSPDGKKV-LTVSADKSAKVWEI 264 (612)
Q Consensus 224 ~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~dg~i~iw~~ 264 (612)
....+. .....+.+++|.|+++.| ++.+.+|.|...++
T Consensus 259 ~~~~i~---~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 259 PKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEEE---CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 766663 334568899999998755 55556687777776
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.34 E-value=1.9e-09 Score=95.16 Aligned_cols=122 Identities=9% Similarity=-0.066 Sum_probs=86.3
Q ss_pred eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcCCcEEEEe
Q 007229 139 TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYD 218 (612)
Q Consensus 139 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 218 (612)
.+..++.. ..+..++++|||+ ++++...++.|..|+.... ...+......+.+++|+|||+++++...++.+..|+
T Consensus 20 v~~~~p~~-~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~ 95 (302)
T d2p4oa1 20 IITSFPVN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 95 (302)
T ss_dssp EEEEECTT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred EEEECCCC-CCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence 34444432 2578899999998 6899999999999985543 233445667899999999999888888888888887
Q ss_pred cCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 219 GKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
......................+++.++++++++.+.++.+..++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 141 (302)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred ecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeec
Confidence 6544322211111134556788999999988877777776666665
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.30 E-value=1.2e-08 Score=88.71 Aligned_cols=233 Identities=15% Similarity=0.166 Sum_probs=159.0
Q ss_pred ceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEecc------CCCceEEEEECCC-CCEEEE-eeCcCeEEEeecCC
Q 007229 20 RGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGE------HGYPVTVARYSPN-GEWIAS-ADVSGSVRIWGTHN 90 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~------h~~~v~~~~~s~d-~~~las-~~~d~~i~iwd~~~ 90 (612)
....++++|+|+.+++-. ++.|++||.+ ++.+..+.. ....-..+++.++ +.++++ .+.++.|.+++...
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 578999999999766654 6899999976 555554421 1223445666555 344443 34556787877654
Q ss_pred CceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCceeeee--ccCCceEEEEEEcCCCCEEEEEee
Q 007229 91 GFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGTTVGDF--DGHSRRVLSCEFKPTRPFRIATCG 167 (612)
Q Consensus 91 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~ 167 (612)
.. ....-.........+++.++|+.+++..... +++.++ .++.+..+ ..+......+++.++++ ++++..
T Consensus 103 ~~-~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~-----~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~ 175 (279)
T d1q7fa_ 103 QF-VRKFGATILQHPRGVTVDNKGRIIVVECKVM-----RVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN 175 (279)
T ss_dssp CE-EEEECTTTCSCEEEEEECTTSCEEEEETTTT-----EEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEG
T ss_pred cc-eeecCCCcccccceeccccCCcEEEEeeccc-----eeeEeccCCceeecccccccccccceeeecccee-EEeeec
Confidence 32 2222223345678999999998777765544 355555 56666655 45667788999999987 688888
Q ss_pred cCCeEEEEeCCCCeeeecc--cccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCeeeeeeccCCccccEEEEEEe
Q 007229 168 EDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS 244 (612)
Q Consensus 168 ~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~ 244 (612)
..+.|++||.. ++.+.++ .+.......|++.++|+.+++-.. ++.|.+|+ .+|+.+..+... ........+++.
T Consensus 176 ~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~-~~~~~p~~vav~ 252 (279)
T d1q7fa_ 176 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESK-VKHAQCFDVALM 252 (279)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEES-SCCSCEEEEEEE
T ss_pred cccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCC-CCCCCEeEEEEe
Confidence 88999999965 4555444 234556889999999986665443 45699998 568877776432 233467899999
Q ss_pred cCCCEEEEEeCCCcEEEEEe
Q 007229 245 PDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 245 ~~~~~l~~~~~dg~i~iw~~ 264 (612)
|+|+++ +++.++.|++|+.
T Consensus 253 ~dG~l~-V~~~n~~v~~fr~ 271 (279)
T d1q7fa_ 253 DDGSVV-LASKDYRLYIYRY 271 (279)
T ss_dssp TTTEEE-EEETTTEEEEEEC
T ss_pred CCCcEE-EEeCCCeEEEEEe
Confidence 999754 5567889999998
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.28 E-value=7.2e-09 Score=91.80 Aligned_cols=233 Identities=9% Similarity=-0.005 Sum_probs=155.8
Q ss_pred eeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC----cCeEEEeecCCCceee
Q 007229 21 GILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV----SGSVRIWGTHNGFVLK 95 (612)
Q Consensus 21 v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~----d~~i~iwd~~~~~~~~ 95 (612)
.-.++|.++|++.++-. ++.|+.|+.++++....+.........+++++||+++++... .+.+...+..... +.
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~-~~ 120 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQ 120 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CE
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce-ee
Confidence 35789999998555544 789999999888776666667778899999999998887543 2335555555544 22
Q ss_pred eeeee--cCCCeEEEEECCCCCEEEEEeCCCC-eeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe
Q 007229 96 NEFKV--LSGRIDDLQWSPDGLRIVACGDGKG-KSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL 171 (612)
Q Consensus 96 ~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~-~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 171 (612)
..... -......+++.++|+..++...... ...-.++.++ .++.+..+...-.....++|+|+++.+.++-+..+.
T Consensus 121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~ 200 (319)
T d2dg1a1 121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR 200 (319)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCc
Confidence 22211 1235788999999987766432211 1123466665 344444444334456789999999976777788899
Q ss_pred EEEEeCCCC-eeeec-------ccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccC---CccccEEE
Q 007229 172 VNFYEGPPF-KFKLS-------HREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSED---GHHGSIYA 240 (612)
Q Consensus 172 i~~wd~~~~-~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~ 240 (612)
|..|++... ..... ..........|++.++|++.++....+.|.+||. +|+.+..+..+. ++...+++
T Consensus 201 I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~ 279 (319)
T d2dg1a1 201 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTH 279 (319)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCE
T ss_pred eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeee
Confidence 999986532 11111 1111233678999999998787778899999995 788888775432 23346789
Q ss_pred EEEecCCCEEEEEeC
Q 007229 241 VSWSPDGKKVLTVSA 255 (612)
Q Consensus 241 i~~~~~~~~l~~~~~ 255 (612)
++|.+++..+++...
T Consensus 280 ~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 280 PQFIPGTNQLIICSN 294 (319)
T ss_dssp EEECTTSCEEEEEEE
T ss_pred EEEeCCCCEEEEEcC
Confidence 999998877766654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.25 E-value=4.1e-09 Score=90.54 Aligned_cols=111 Identities=9% Similarity=-0.002 Sum_probs=77.7
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecc
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNM 533 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 533 (612)
..++++|+++++++...++.|..++.+.... .......-.....|++.++|+++++....+.|..++......... .
T Consensus 143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~--~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~-~ 219 (260)
T d1rwia_ 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL-P 219 (260)
T ss_dssp CEEEECTTCCEEEEEGGGTEEEEECTTTCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC-C
T ss_pred ceeeecCCCCEeeecccccccccccccccee--eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE-c
Confidence 4577888888777777778888888776543 122223334568899999999998888889999888766544321 1
Q ss_pred cccccceeEEEecCCCcEEEEeecCcEEEEEEcc
Q 007229 534 LFHTARINCLAWSPSSTMVATGSIDTCVIIYEIG 567 (612)
Q Consensus 534 ~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~ 567 (612)
...-.....|+++++|.++++-..+++|+.++..
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 2223457899999999887776677767655543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.18 E-value=1.1e-09 Score=96.04 Aligned_cols=232 Identities=13% Similarity=0.076 Sum_probs=129.5
Q ss_pred EEEccC--CCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeC-c-----CeEEEeecCCCceee
Q 007229 24 ISGNPK--TDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADV-S-----GSVRIWGTHNGFVLK 95 (612)
Q Consensus 24 ~~~s~d--~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~-d-----~~i~iwd~~~~~~~~ 95 (612)
+..||| |+.+|+.+++.|.+.|+.+++..+ |..+.+.+...+|||||+.||.... + ..|.+++..+++..
T Consensus 4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~- 81 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK- 81 (281)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE-
T ss_pred cccCCCCCCCEEEEEeCCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE-
Confidence 346899 999999999999999999988655 7778888999999999999996542 1 24777787777632
Q ss_pred eeeeec-------CCCeEEEEECCCCCEEEEEeCCCCee-eEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEe
Q 007229 96 NEFKVL-------SGRIDDLQWSPDGLRIVACGDGKGKS-FVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATC 166 (612)
Q Consensus 96 ~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~~~~-~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 166 (612)
.+..+ ........|+|||+.|+......... ...++..+ .+....... ....... +.+++...++..
T Consensus 82 -~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~ 157 (281)
T d1k32a2 82 -RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATHI-LFADGRRVIGRN 157 (281)
T ss_dssp -ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSEE-EEETTEEEEEES
T ss_pred -EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCcccee-eecCCCeEEEee
Confidence 22211 22456789999999998865432211 11223333 222222211 1122222 333333233333
Q ss_pred ecCC-----------eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEE-c--CCcEEEEecCCCCeeeeeeccC
Q 007229 167 GEDF-----------LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-S--DRKGLIYDGKSGEKIGEFSSED 232 (612)
Q Consensus 167 ~~d~-----------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--dg~i~vwd~~~~~~~~~~~~~~ 232 (612)
..+. ............... ...........++++ .++... . ...|.++|+.+++..... .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt---~ 231 (281)
T d1k32a2 158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHT---S 231 (281)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECC---C
T ss_pred ccccceeeeeccCCcceeeeeccccceeec-cCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEee---c
Confidence 2211 111111111111111 122233344455544 333333 2 245777888766554332 1
Q ss_pred CccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeE
Q 007229 233 GHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVI 274 (612)
Q Consensus 233 ~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 274 (612)
..... ...|+|||+.|+.. .++.|.++|+ .+++..
T Consensus 232 ~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~----~~g~~~ 266 (281)
T d1k32a2 232 FTDYY--PRHLNTDGRRILFS-KGGSIYIFNP----DTEKIE 266 (281)
T ss_dssp CCSSC--EEEEEESSSCEEEE-ETTEEEEECT----TTCCEE
T ss_pred CCCcc--cccCcCCCCEEEEE-eCCEEEEEEC----CCCCEE
Confidence 22222 34689999998865 4678888888 555443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.17 E-value=1.9e-07 Score=80.79 Aligned_cols=203 Identities=11% Similarity=0.105 Sum_probs=136.3
Q ss_pred ceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee------cCCCeEEEEECCCCC-EEEEEeCCCCeeeEEEEE
Q 007229 61 PVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV------LSGRIDDLQWSPDGL-RIVACGDGKGKSFVRAFM 133 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~s~~~~-~l~~~~~~~~~~~i~i~~ 133 (612)
....++++++|+++++-..++.|++||.+. +.+. .+.. .......+++.++.. .+++...... ++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~i~~ 97 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKF-QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH----QIQI 97 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEE-EECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC----EEEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEE-EecccCCCcccccccccccccccccccceeccCCcc----cccc
Confidence 467999999999888877788999999764 3222 2221 111345566655544 4443333322 3555
Q ss_pred ec-CCceeeeec-cCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecc--cccccceEEEEECCCCCeEEEEE
Q 007229 134 WD-SGTTVGDFD-GHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSH--REHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 134 ~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
++ .++....+. ........+++.+++. ++++....+.+.+++.. ++.+..+ ..+......+++.++++.+++..
T Consensus 98 ~~~~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~ 175 (279)
T d1q7fa_ 98 YNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 175 (279)
T ss_dssp ECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred ccccccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeec
Confidence 55 566666553 3456678999999998 56766777788888854 4444443 34556788999999998888888
Q ss_pred cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeC-CCcEEEEEeecCCCCCeeEeeee
Q 007229 210 SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSA-DKSAKVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 210 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 278 (612)
..+.|++||. +++.+..+... +.......|++.++|+.+++-.. ++.|.+|+. +++.+..+.
T Consensus 176 ~~~~V~~~d~-~G~~~~~~g~~-g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-----~G~~~~~~~ 238 (279)
T d1q7fa_ 176 RAHCVKVFNY-EGQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-----DGQLISALE 238 (279)
T ss_dssp GGTEEEEEET-TCCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-----TSCEEEEEE
T ss_pred cccceeeeec-CCceeeeeccc-ccccCCcccccccCCeEEEEECCCCcEEEEECC-----CCCEEEEEe
Confidence 8899999995 57777776322 34556789999999997666443 346888874 566666554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.14 E-value=1.7e-07 Score=82.36 Aligned_cols=73 Identities=8% Similarity=0.202 Sum_probs=56.6
Q ss_pred EEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCc-EEEEEcCCCeEEEEecCCcc
Q 007229 453 VTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVS-MFASADGNREAIVWDRVSKE 527 (612)
Q Consensus 453 i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~ 527 (612)
...+++.++|++.++....+.|.+||.+++.. ...+.......++++|.||++ +.++.+.++.|...++...-
T Consensus 228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~--~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEE--EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 45789999999888877889999999988775 344444456789999999987 45666778888888875543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.3e-08 Score=93.31 Aligned_cols=258 Identities=11% Similarity=0.028 Sum_probs=147.4
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCCCCceeeEec-cCCCce-----------------EEEEECCCCCEEEEeeC
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYG-EHGYPV-----------------TVARYSPNGEWIASADV 79 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v-----------------~~~~~s~d~~~las~~~ 79 (612)
.+.+....|||||+.||+..++.|.+.+..++...+... +-.+.| .++.|||||++||....
T Consensus 113 ~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~ 192 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred ccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence 345667899999999999999999999998877665443 222222 47889999999998642
Q ss_pred c-C---------------------------------eEEEeecCCCceeeeeee-----ecCCCeEEEEECCCCCEEEEE
Q 007229 80 S-G---------------------------------SVRIWGTHNGFVLKNEFK-----VLSGRIDDLQWSPDGLRIVAC 120 (612)
Q Consensus 80 d-~---------------------------------~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~ 120 (612)
| . .+.|+|+.++........ ....-+..+.|+|+++.++..
T Consensus 193 D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~ 272 (465)
T d1xfda1 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW 272 (465)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEE
Confidence 2 2 244555544432111111 111236778999999876665
Q ss_pred eCCC-CeeeEEEEEecCCceeeeeccCC-ce----EEEEEEcCCCCEEEEE-ee-cC--CeEEEEeC------CCCeeee
Q 007229 121 GDGK-GKSFVRAFMWDSGTTVGDFDGHS-RR----VLSCEFKPTRPFRIAT-CG-ED--FLVNFYEG------PPFKFKL 184 (612)
Q Consensus 121 ~~~~-~~~~i~i~~~~~~~~~~~~~~~~-~~----v~~~~~~~~~~~~l~~-~~-~d--~~i~~wd~------~~~~~~~ 184 (612)
.... ....+.+++..+++....+..+. .. -....|+|+|+.++.. .+ .+ +.+....+ ..++...
T Consensus 273 ~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~ 352 (465)
T d1xfda1 273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ 352 (465)
T ss_dssp EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred EccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeE
Confidence 5433 22234444555676554443222 11 1345789999853322 21 22 23333321 1233333
Q ss_pred cccccccceEEE-EECCCCCeEEEEE-cCC--c--EEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC--
Q 007229 185 SHREHSNFVNCI-RFSPDGSKLISVS-SDR--K--GLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-- 256 (612)
Q Consensus 185 ~~~~~~~~v~~~-~~s~~~~~l~~~~-~dg--~--i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-- 256 (612)
.+....-.|..+ +|.++++.++..+ .++ . +.-.++..+.....+...........++.|+|++++++..+..
T Consensus 353 ~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~ 432 (465)
T d1xfda1 353 SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG 432 (465)
T ss_dssp BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred EeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCC
Confidence 444444455554 6888888775443 322 2 3333444333333332222345567799999999998866543
Q ss_pred -CcEEEEEeecCCCCCeeEeeeec
Q 007229 257 -KSAKVWEILEDGSGGRVIKTFAS 279 (612)
Q Consensus 257 -g~i~iw~~~~~~~~~~~~~~~~~ 279 (612)
-.+.+++. .+++.+..+..
T Consensus 433 ~P~~~~~~~----~~~~~~~~Le~ 452 (465)
T d1xfda1 433 VPMVTVHNT----TDKKKMFDLET 452 (465)
T ss_dssp SCCEEEEET----TTCCEEEEEEC
T ss_pred CCeEEEEEC----CCCCEEEEEcC
Confidence 35677776 67777766643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.02 E-value=1e-06 Score=77.68 Aligned_cols=104 Identities=9% Similarity=-0.024 Sum_probs=71.4
Q ss_pred CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc----CCcEEEEecCCC
Q 007229 147 SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS----DRKGLIYDGKSG 222 (612)
Q Consensus 147 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~ 222 (612)
...+..++|.++|+ +.++-...+.|..|+....+....+.........+++++||+++++... .+.+...+...+
T Consensus 39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 34456899999998 6788788899999998887666555556667899999999987766533 233555555554
Q ss_pred CeeeeeeccCCccccEEEEEEecCCCEEEE
Q 007229 223 EKIGEFSSEDGHHGSIYAVSWSPDGKKVLT 252 (612)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 252 (612)
....... ..........+++.++|++.++
T Consensus 118 ~~~~~~~-~~~~~~~~nd~~~d~~G~l~vt 146 (319)
T d2dg1a1 118 NLQDIIE-DLSTAYCIDDMVFDSKGGFYFT 146 (319)
T ss_dssp SCEEEEC-SSSSCCCEEEEEECTTSCEEEE
T ss_pred eeeeecc-CCCcccCCcceeEEeccceeec
Confidence 4433331 1122345778899999986554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.95 E-value=1.3e-06 Score=75.81 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=152.1
Q ss_pred EEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeee
Q 007229 23 LISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKV 100 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~ 100 (612)
+..|++....|.... ++.|.-||.++++... +. ....+.++++.++|+++++. .+ .+.++|..+++. ......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~-~~l~~~ 96 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-TLHAEL 96 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-EEEECS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEEEecCCCEEEEE-eC-ccEEeeccccee-eEEeee
Confidence 467888777777765 7899999999886543 32 35678999999999888765 44 588999998873 211111
Q ss_pred ----cCCCeEEEEECCCCCEEEEEeCCCC-eeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEE
Q 007229 101 ----LSGRIDDLQWSPDGLRIVACGDGKG-KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFY 175 (612)
Q Consensus 101 ----~~~~i~~~~~s~~~~~l~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~w 175 (612)
....++.+.+.|+|+..++...... .....++....++....+.. -.....++|+++++.++++-+..+.|..+
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence 1225789999999997776543211 01234566666654444432 33457899999999878888888999998
Q ss_pred eCCCCe--------eeecccccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCccccEEEEEEe-cC
Q 007229 176 EGPPFK--------FKLSHREHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWS-PD 246 (612)
Q Consensus 176 d~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~-~~ 246 (612)
++.... ......+..+....+++.++|++.++.-..+.|..||. +|+.+..+.. ....+++++|- +|
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l---P~~~~T~~~FGG~d 251 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGPD 251 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEESTT
T ss_pred eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC---CCCceEEEEEeCCC
Confidence 764211 11122344556889999999987776666788999994 6888888843 23468999996 56
Q ss_pred CCEEEEEe
Q 007229 247 GKKVLTVS 254 (612)
Q Consensus 247 ~~~l~~~~ 254 (612)
.+.|++.+
T Consensus 252 ~~~LyvTt 259 (295)
T d2ghsa1 252 ASRLLVTS 259 (295)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 66665543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.74 E-value=1.3e-05 Score=69.27 Aligned_cols=222 Identities=12% Similarity=0.006 Sum_probs=136.7
Q ss_pred EEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe-eccEEEEecCCCeEEEEecCCCCCCccceeccC
Q 007229 333 LTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA-VEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVG 411 (612)
Q Consensus 333 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 411 (612)
..|...++.+..+--..+.|..||..+++..... ....+.++.+ .++.++.++.+ .+..+|..+++..... ...
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~--~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~--~~~ 97 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTVHA--LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHA--ELE 97 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE--CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEE--CSS
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE--CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEe--eee
Confidence 3344333555556567788999998887655432 3456667777 44445555544 5777777665432000 000
Q ss_pred CCcceeeecCCCCcEEEEEeeccEEEeecccceeeecccceEEEEEEccCCCeEEEEecC----CeEEEEEccCcccccc
Q 007229 412 SQPLDLSLALSSPELALVSTESGVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQN----GKLHIYSISGNTLTEE 487 (612)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~v~i~d~~~~~~~~~ 487 (612)
.......++.+.+.|+|++.++...+ +.-.+|.+..++. .
T Consensus 98 ----------------------------------~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~--~ 141 (295)
T d2ghsa1 98 ----------------------------------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--T 141 (295)
T ss_dssp ----------------------------------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--E
T ss_pred ----------------------------------cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE--E
Confidence 00012357888999999877665432 3456777776665 2
Q ss_pred eeeccccCceEEEEEcCCCcEEE-EEcCCCeEEEEecCCcce-------eeecccccccceeEEEecCCCcEEEEeecCc
Q 007229 488 MVLEKHRGAITVIQYSPDVSMFA-SADGNREAIVWDRVSKEV-------KLNNMLFHTARINCLAWSPSSTMVATGSIDT 559 (612)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~ 559 (612)
... ..-...+.++|+++++.+. +-+..+.|..|++..... ......+.......+++..+|++.++.-..+
T Consensus 142 ~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g 220 (295)
T d2ghsa1 142 KLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG 220 (295)
T ss_dssp EEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred EEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC
Confidence 222 2233567899999998654 555678899888743221 1112223345678899999999877776788
Q ss_pred EEEEEEccCCCcceeeeecccccCeeeEEEe--cCce-EEEcc
Q 007229 560 CVIIYEIGKPASSRITIKNAHLGGVYGVAFM--DDFN-VVSSG 599 (612)
Q Consensus 560 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~-l~s~~ 599 (612)
.|..||-+ + +.+..+.-....+++++|- +.+. ++|.+
T Consensus 221 ~V~~~dp~--G-~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 221 AVDRYDTD--G-NHIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp EEEEECTT--C-CEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ceEEecCC--C-cEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 89999965 4 6666666555679999997 4444 45444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.54 E-value=8.4e-06 Score=70.49 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=67.2
Q ss_pred EECCC--CCEEEEEeCCCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC-----eEEEEeCCCC
Q 007229 109 QWSPD--GLRIVACGDGKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF-----LVNFYEGPPF 180 (612)
Q Consensus 109 ~~s~~--~~~l~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~ 180 (612)
..||| |++++..+.+. ||..+ .+.....+..+...+...+|||||+.++.+...++ .|.+++...+
T Consensus 5 ~~sPdi~G~~v~f~~~~d------l~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDD------LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp CEEEEEETTEEEEEETTE------EEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred ccCCCCCCCEEEEEeCCc------EEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 45789 99999887764 77666 34445677778888999999999997555544332 4777788877
Q ss_pred eeeeccc------ccccceEEEEECCCCCeEEEEEc
Q 007229 181 KFKLSHR------EHSNFVNCIRFSPDGSKLISVSS 210 (612)
Q Consensus 181 ~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~ 210 (612)
+...... ..........|+|||+.|+....
T Consensus 79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred ceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence 7654321 12234567889999998887543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=0.00018 Score=60.41 Aligned_cols=236 Identities=12% Similarity=0.022 Sum_probs=147.3
Q ss_pred CCEEEEecCCEEEEEeCCCCcee-----eEeccCCCceEEEEECCCCCEEEEe-eCcCeEEEeecCCCceeeeeeeecCC
Q 007229 30 TDTILYCNGRSVLIRYLDKPLHV-----EFYGEHGYPVTVARYSPNGEWIASA-DVSGSVRIWGTHNGFVLKNEFKVLSG 103 (612)
Q Consensus 30 ~~~l~~~~~~~i~i~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 103 (612)
|.+|+++..+.|+-.+++..... ..+..+...+.+++|.+..+.|.-+ ..++.|...++.... ....+.....
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-~~~v~~~~~~ 79 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG 79 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-cEEEEEeccc
Confidence 56888888888888887654322 2244455678899999887777665 456788888887665 2223333335
Q ss_pred CeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCe--EEEEeCCCCe
Q 007229 104 RIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFL--VNFYEGPPFK 181 (612)
Q Consensus 104 ~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~wd~~~~~ 181 (612)
.+..+++..-+..|..+..... .|.+...+.......+......+..+++.|...+++.+-...+. |.--++....
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~--~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLD--RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred cccEEEEeccCCeEEEeccCCC--EEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence 7889999887777776665443 35556665443322333444678999999988876666433333 4434554333
Q ss_pred eeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE-eCCCcE
Q 007229 182 FKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV-SADKSA 259 (612)
Q Consensus 182 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i 259 (612)
........-.....+++.+.++.|+.+. ..+.|...++........+. +.. ...++++. +.+|... ...+.|
T Consensus 158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~---~~~-~P~~lav~--~~~lYwtd~~~~~I 231 (263)
T d1npea_ 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQ-YPFAVTSY--GKNLYYTDWKTNSV 231 (263)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCC-SEEEEEEE--TTEEEEEETTTTEE
T ss_pred ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC---CCC-CcEEEEEE--CCEEEEEECCCCEE
Confidence 2222223334578999998888887664 46788888876544333331 222 24577776 3445444 355777
Q ss_pred EEEEeecCCCCCeeEeeee
Q 007229 260 KVWEILEDGSGGRVIKTFA 278 (612)
Q Consensus 260 ~iw~~~~~~~~~~~~~~~~ 278 (612)
...|. .+++....+.
T Consensus 232 ~~~~~----~~g~~~~~~~ 246 (263)
T d1npea_ 232 IAMDL----AISKEMDTFH 246 (263)
T ss_dssp EEEET----TTTEEEEEEC
T ss_pred EEEEC----CCCccceEEC
Confidence 77777 6677665554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=0.00024 Score=59.60 Aligned_cols=218 Identities=7% Similarity=-0.086 Sum_probs=142.7
Q ss_pred ceeEEEEccCCCEEEEec--CCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEE-EeeCcCeEEEeecCCCceeee
Q 007229 20 RGILISGNPKTDTILYCN--GRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIA-SADVSGSVRIWGTHNGFVLKN 96 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~la-s~~~d~~i~iwd~~~~~~~~~ 96 (612)
.+.+++|.+..+.|.... ++.|...+++.......+......+..+++..-++.|. +-...+.|.+.++..... ..
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~ 115 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RV 115 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EE
Confidence 567899999999888875 57899989987766665655556789999987666665 445567999999886652 22
Q ss_pred eeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec-CCc-eeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEE
Q 007229 97 EFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD-SGT-TVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNF 174 (612)
Q Consensus 97 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~ 174 (612)
...........+++.|...+|.....+... .+|+..+ .|. ........-.....+++.+.++.+..+-...+.|..
T Consensus 116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~--~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~ 193 (263)
T d1npea_ 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDN--PKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (263)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSS--CEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EecccccCCcEEEEecccCcEEEeecCCCC--cEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence 233334678999999988877765443221 1344333 232 222223334567899999888865566667789999
Q ss_pred EeCCCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEec
Q 007229 175 YEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSP 245 (612)
Q Consensus 175 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~ 245 (612)
.++........+.+... ..+|++. +.+|+... ..+.|...|..+++....+.. ........++..+
T Consensus 194 ~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~--~~~~~~~gi~v~~ 260 (263)
T d1npea_ 194 LNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--HKQTRLYGITIAL 260 (263)
T ss_dssp EETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC--SSCCCCCCEEEEC
T ss_pred EECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECC--CCCCCcceEEEeC
Confidence 99876655444444333 4577775 45565554 568888899888887766621 2223344555544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.35 E-value=0.00013 Score=66.26 Aligned_cols=110 Identities=14% Similarity=0.084 Sum_probs=68.9
Q ss_pred EEEEcCCCCEEEEEeecC-----C------eEEEEeCCCCeeeecc---cccccceEEEEECCCCCeEEEEEcC-CcEEE
Q 007229 152 SCEFKPTRPFRIATCGED-----F------LVNFYEGPPFKFKLSH---REHSNFVNCIRFSPDGSKLISVSSD-RKGLI 216 (612)
Q Consensus 152 ~~~~~~~~~~~l~~~~~d-----~------~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~v 216 (612)
......+++ +++.|+.+ + .+.+||..+++..... ..+.......++.+++++++.|+.+ ..+.+
T Consensus 24 ~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 24 AAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence 334445665 56666642 1 3779999887654321 1233334466788999988888665 57999
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC------CcEEEEEe
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD------KSAKVWEI 264 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~i~iw~~ 264 (612)
||..+......-. . .....-...+..+||+.++.++.+ ..+.+||.
T Consensus 103 yd~~~~~w~~~~~-~-~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~ 154 (387)
T d1k3ia3 103 YDSSSDSWIPGPD-M-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 154 (387)
T ss_dssp EEGGGTEEEECCC-C-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred ecCccCccccccc-c-cccccccceeeecCCceeeeccccccccccceeeeecC
Confidence 9998876543321 1 112223456777899988888753 35788887
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=0.00097 Score=56.01 Aligned_cols=237 Identities=11% Similarity=-0.031 Sum_probs=147.1
Q ss_pred EEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEee-CcCeEEEeecCCCce---eeeeeeecCCCeEE
Q 007229 32 TILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASAD-VSGSVRIWGTHNGFV---LKNEFKVLSGRIDD 107 (612)
Q Consensus 32 ~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~-~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~ 107 (612)
+|+++....|+-.++++......+ .....+.+++|.+..+.|.-+. .++.|.--++..... ...........+..
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g 81 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence 678888888999999887655544 4556778999999887777654 456677666653221 12222233356778
Q ss_pred EEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEe-ecCCeEEEEeCCCCeeeecc
Q 007229 108 LQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATC-GEDFLVNFYEGPPFKFKLSH 186 (612)
Q Consensus 108 ~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~ 186 (612)
+++.+.++.|..+..... .|.+...+.......+.........+++.|...+++.+. +..+.|.-.++.........
T Consensus 82 lAvD~~~~~lY~~d~~~~--~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~ 159 (266)
T d1ijqa1 82 LAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (266)
T ss_dssp EEEETTTTEEEEEETTTT--EEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred EEEeeccceEEEEecCCC--EEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence 999888887777655544 466777775555555566667789999999877666654 33456766666544433333
Q ss_pred cccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEee
Q 007229 187 REHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEIL 265 (612)
Q Consensus 187 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~ 265 (612)
...-.....+++.+.++.|+.+. ..+.|...++.......... .........++++. ++....+-..++.|...+.
T Consensus 160 ~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~-~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~- 236 (266)
T d1ijqa1 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR- 236 (266)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET-
T ss_pred ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe-CCCcccccEEEEEE-CCEEEEEECCCCeEEEEEC-
Confidence 33345678999999888777764 45788888886544333321 11223446677777 3333333345667766665
Q ss_pred cCCCCCeeEeee
Q 007229 266 EDGSGGRVIKTF 277 (612)
Q Consensus 266 ~~~~~~~~~~~~ 277 (612)
.++.....+
T Consensus 237 ---~~g~~~~~~ 245 (266)
T d1ijqa1 237 ---LTGSDVNLL 245 (266)
T ss_dssp ---TTCCCCEEE
T ss_pred ---CCCcceEEE
Confidence 454444433
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.20 E-value=0.0017 Score=61.36 Aligned_cols=111 Identities=6% Similarity=0.066 Sum_probs=64.3
Q ss_pred eEEEEEc-CCcEEEEecC-CCCeeeeeeccCCccc--------cEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCee
Q 007229 204 KLISVSS-DRKGLIYDGK-SGEKIGEFSSEDGHHG--------SIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRV 273 (612)
Q Consensus 204 ~l~~~~~-dg~i~vwd~~-~~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 273 (612)
.|+.++. ++.|.-.|.. +|+.+-++........ .-..+++. +..++.++.||.+.-.|. ++++.
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda----~tG~~ 137 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDA----KTGKI 137 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEET----TTCCE
T ss_pred EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeeh----hhhhh
Confidence 4554443 6778888864 6888776532111110 00223443 345777888999888898 88988
Q ss_pred EeeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCCc
Q 007229 274 IKTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKAP 320 (612)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~ 320 (612)
+-.+..................++.++++.. .|.|.-+|..+.+...
T Consensus 138 ~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W 190 (571)
T d2ad6a1 138 NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred hccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEE
Confidence 7776554322222222222233667777664 6788999877765543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.19 E-value=0.0008 Score=61.51 Aligned_cols=240 Identities=10% Similarity=-0.041 Sum_probs=129.6
Q ss_pred ceeEEEEccCCCEEEEec--C----CEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCc-------------
Q 007229 20 RGILISGNPKTDTILYCN--G----RSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVS------------- 80 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~--~----~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d------------- 80 (612)
.+..+++|||++++|++- + ..|++.|+++++.+..... ......++|++|++.|.-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 345678999999999985 2 3899999999987653211 1123578999999988754322
Q ss_pred ---CeEEEeecCCCcee-eeeeeec--CCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCce----------eeeec
Q 007229 81 ---GSVRIWGTHNGFVL-KNEFKVL--SGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTT----------VGDFD 144 (612)
Q Consensus 81 ---~~i~iwd~~~~~~~-~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~----------~~~~~ 144 (612)
..|..|.+.+...- ...+... ...+..+..++|+++++.....+......+|..+.... .....
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 25788888776431 1122222 23466788899999987654332221234555542211 11122
Q ss_pred cCCceEEEEEEcCCCCEEEEEe--ecCCeEEEEeCCCCee---eecccccccceEEEEECCCCCeEEEEE-cCC--cEEE
Q 007229 145 GHSRRVLSCEFKPTRPFRIATC--GEDFLVNFYEGPPFKF---KLSHREHSNFVNCIRFSPDGSKLISVS-SDR--KGLI 216 (612)
Q Consensus 145 ~~~~~v~~~~~~~~~~~~l~~~--~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg--~i~v 216 (612)
.......- ..+.++.+++.+- ..++.|...++..... ...+..+...+..-.++..+.+|+... .++ .|++
T Consensus 285 ~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 285 NFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred ccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence 22222222 2222232222222 1235565566554322 112333444454444444455666544 443 4788
Q ss_pred EecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC----CcEEEEEe
Q 007229 217 YDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD----KSAKVWEI 264 (612)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d----g~i~iw~~ 264 (612)
+++.+++...... ...+.+..+...++...+...-.+ .++.-+|+
T Consensus 364 ~~~~~~~~~~~~~---~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl 412 (430)
T d1qfma1 364 HDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (430)
T ss_dssp EETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred EECCCCcEEEecC---CCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEEC
Confidence 9998877655442 333455555555555544433222 56777777
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.18 E-value=5e-05 Score=66.29 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=128.2
Q ss_pred EEEEcc---CCCEEEEec--CCEEEEEeCCCCceeeEec-cCCCceEEEEECCC--CCEEEEeeCc--------------
Q 007229 23 LISGNP---KTDTILYCN--GRSVLIRYLDKPLHVEFYG-EHGYPVTVARYSPN--GEWIASADVS-------------- 80 (612)
Q Consensus 23 ~~~~s~---d~~~l~~~~--~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~s~d--~~~las~~~d-------------- 80 (612)
.+++.. ||++|++.. +++|.+.|+++.+..+.+. .....+..++..++ -.|++..+.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 566655 999999997 6899999999988766443 34556777777654 4577776542
Q ss_pred ----CeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCC------------CeeeEEEEEecC-------C
Q 007229 81 ----GSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGK------------GKSFVRAFMWDS-------G 137 (612)
Q Consensus 81 ----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~------------~~~~i~i~~~~~-------~ 137 (612)
+.+.+.|..+.+... +.. -.+....+.++|||+++++.+.+. ...++.+.+|.. |
T Consensus 169 ~~y~~~~t~ID~~tm~V~~-QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAW-QVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp G-EEEEEEEEETTTTEEEE-EEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhcceEEEEEecCCceEEE-Eee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 236778888877433 232 244677899999999999887542 223456666641 1
Q ss_pred c-----eeeeeccC-------------CceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeee-----------cccc
Q 007229 138 T-----TVGDFDGH-------------SRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKL-----------SHRE 188 (612)
Q Consensus 138 ~-----~~~~~~~~-------------~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-----------~~~~ 188 (612)
+ .+..+.+. ......+.++|||+|+++++..+.++.++|++...... .-..
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence 1 01111111 12234578999999999999999999999976422111 0111
Q ss_pred cccceEEEEECCCCCeEEEEEcCCcEEEEecCC
Q 007229 189 HSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKS 221 (612)
Q Consensus 189 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 221 (612)
..-.....+|..+|+-..+.--|..|.-|++..
T Consensus 327 lglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 223355678988885444444699999999853
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.09 E-value=0.0008 Score=60.75 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=46.9
Q ss_pred eEEEEECCCCCeEEEEEcCC-----------cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCC-CcEE
Q 007229 193 VNCIRFSPDGSKLISVSSDR-----------KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSAD-KSAK 260 (612)
Q Consensus 193 v~~~~~s~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~ 260 (612)
+.......+|+.++.|+.+. .+.+||..+++..........+.......++.++++.++.|+.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 34445566888888877531 26799999887644322112333333456788999988888655 5889
Q ss_pred EEEe
Q 007229 261 VWEI 264 (612)
Q Consensus 261 iw~~ 264 (612)
+||.
T Consensus 102 ~yd~ 105 (387)
T d1k3ia3 102 LYDS 105 (387)
T ss_dssp EEEG
T ss_pred EecC
Confidence 9998
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.06 E-value=0.002 Score=52.92 Aligned_cols=228 Identities=12% Similarity=0.121 Sum_probs=142.4
Q ss_pred CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeee
Q 007229 212 RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVG 291 (612)
Q Consensus 212 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (612)
.++.|.|+.++........ ..+ +.-.+|..+.|+.-+ ...++++|+ ++.+.++.+.... .+.-
T Consensus 45 ~~VvIidl~n~~~~~Rrpi--~Ad----sAIMhP~~~IiALra-g~~LQiFnl----etK~klks~~~~e------~Vvf 107 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPI--SAD----SAIMNPASKVIALKA-GKTLQIFNI----EMKSKMKAHTMTD------DVTF 107 (327)
T ss_dssp EEEEEEETTSTTSCEEEEC--CCS----EEEECSSSSEEEEEE-TTEEEEEET----TTTEEEEEEECSS------CCCE
T ss_pred ceEEEEECCCCCcceeccc--chh----hhhcCCCCcEEEEec-CCeEEEEeh----hHhhhhceEEcCC------CcEE
Confidence 4688889887664333211 122 344678888777665 568999999 9999999998775 4455
Q ss_pred eeccCCEEEEEEcCCEEEEEEcCCCCCCceeecCccc--ceeEEEEE-ecCCcEEEEEe-------cCCcEEEEEcCCce
Q 007229 292 CLWQNDHLITVSLGGIISIFSASNLDKAPLSFSGHVK--NVSTLTAL-KISQQTILSSS-------YDGAIIKWIRGVGY 361 (612)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~l~~~~-------~dg~i~~wd~~~~~ 361 (612)
..|-+...+.--.+..|+-|++.....+...+..|.. ...-+.+. +.+.++++..+ -.|.+.+|..+.+.
T Consensus 108 WkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~ 187 (327)
T d1utca2 108 WKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 187 (327)
T ss_dssp EEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred EEecCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc
Confidence 5566777777777888999999776667766665543 22333343 44466665422 23678899988876
Q ss_pred eeeeceecccceEEEEeecc----EEEE----ecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeec
Q 007229 362 SSKLEKKYDARIKCLAAVEE----VIFT----AGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTES 433 (612)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~----~l~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (612)
...+.+ |......+..+++ .+++ +...+++++.++...... ..........+-+.|+.
T Consensus 188 sQ~ieG-haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g---~~~f~kk~vdi~fppea---------- 253 (327)
T d1utca2 188 SQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG---NQPFPKKAVDVFFPPEA---------- 253 (327)
T ss_dssp EEEECC-SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTT---CCCCCCEEEECCCCTTC----------
T ss_pred Cccccc-eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccC---CCCCcceeEEEECCccc----------
Confidence 666554 4444444433211 1211 123368888887664321 01111112222222221
Q ss_pred cEEEeecccceeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccc
Q 007229 434 GVILLDSLKVMSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT 485 (612)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~ 485 (612)
...-..++.+|+....+..-+.-|.+++||++++...
T Consensus 254 ---------------~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 254 ---------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp ---------------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred ---------------cCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence 1234567889998899999999999999999999873
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.00 E-value=0.0025 Score=52.30 Aligned_cols=234 Identities=11% Similarity=0.063 Sum_probs=154.6
Q ss_pred eEEEEccCCCEEEEecCCEEEEEeCCCCceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceeeeeeeec
Q 007229 22 ILISGNPKTDTILYCNGRSVLIRYLDKPLHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLKNEFKVL 101 (612)
Q Consensus 22 ~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~ 101 (612)
-+.-.+|..+.||.-++..+.|+|+++.+.++... ..++|.-=.|-.+. .|+... +..|.-|+++......+.+..|
T Consensus 66 dsAIMhP~~~IiALrag~~LQiFnletK~klks~~-~~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 66 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred hhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEE-cCCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence 45667899999999999999999999988887665 34567677776665 455553 3479999997655455566665
Q ss_pred CC----CeEEEEECCCCCEEEEEeC--CCCeeeEEEEEec-CCceeeeeccCCceEEEEEEcCCC--CEEEEEeec---C
Q 007229 102 SG----RIDDLQWSPDGLRIVACGD--GKGKSFVRAFMWD-SGTTVGDFDGHSRRVLSCEFKPTR--PFRIATCGE---D 169 (612)
Q Consensus 102 ~~----~i~~~~~s~~~~~l~~~~~--~~~~~~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~---d 169 (612)
.. .|..-.-+++.++++..|- ........+-++. ..+.-+.++||......+.+.-+. ..+++.+.. .
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence 53 6888888999999887652 1122233444455 344556678887766666554322 113333322 2
Q ss_pred CeEEEEeCCCCe---eee-----cc----cccccceEEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeeccCCcccc
Q 007229 170 FLVNFYEGPPFK---FKL-----SH----REHSNFVNCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSSEDGHHGS 237 (612)
Q Consensus 170 ~~i~~wd~~~~~---~~~-----~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 237 (612)
+.+.+-++.... ... .+ ....+-..+|..|+.-..++..+.-|.+.+||++++.++..-. -....
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR---Is~~~ 299 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR---ISGET 299 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE---CCSSC
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee---cCCCc
Confidence 577888765421 111 11 0123446678888888889999999999999999999998773 34556
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEE
Q 007229 238 IYAVSWSPDGKKVLTVSADKSAKV 261 (612)
Q Consensus 238 v~~i~~~~~~~~l~~~~~dg~i~i 261 (612)
|...+-..+..-++....+|.|..
T Consensus 300 iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 300 IFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEE
T ss_pred eEEeccCCCCceEEEECCCCeEEE
Confidence 665555555555666667776654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.99 E-value=0.0068 Score=57.08 Aligned_cols=195 Identities=13% Similarity=0.044 Sum_probs=105.8
Q ss_pred CeEEEEEcCCcEEEEecCCCCeeeeeeccCCc--------cccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeE
Q 007229 203 SKLISVSSDRKGLIYDGKSGEKIGEFSSEDGH--------HGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVI 274 (612)
Q Consensus 203 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 274 (612)
..|+.++.++.|.-.|.++|+.+-++...... ...-..++.. +..++.+..++.|.-.|. .+++.+
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda----~tG~~~ 140 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDA----KTGKAI 140 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEET----TTCCEE
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CCeEEEEeCCCEEEEEEC----CCCcEE
Confidence 36777788899999999999988775211000 0000112222 345777788888888888 888888
Q ss_pred eeeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCCceeecC-----------------------
Q 007229 275 KTFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKAPLSFSG----------------------- 325 (612)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~----------------------- 325 (612)
-.+..................++.++.+.. .|.|.-+|..+.+...+....
T Consensus 141 w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 220 (560)
T d1kv9a2 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (560)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccc
Confidence 777654322221111122222555555443 256777776665543322111
Q ss_pred ------cccceeEEEEEecCCcEEEEEec-------------------CCcEEEEEcCCceeeeeceeccc---------
Q 007229 326 ------HVKNVSTLTALKISQQTILSSSY-------------------DGAIIKWIRGVGYSSKLEKKYDA--------- 371 (612)
Q Consensus 326 ------~~~~v~~~~~~~~~~~~l~~~~~-------------------dg~i~~wd~~~~~~~~~~~~~~~--------- 371 (612)
....+......+....+++.+.. ...|.-.|.++++..-..+....
T Consensus 221 ~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~ 300 (560)
T d1kv9a2 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (560)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccc
Confidence 11122222222333444443221 23466677787776654433111
Q ss_pred --ceEEEEee---ccEEEEecCCCeEEEEecCCCCCC
Q 007229 372 --RIKCLAAV---EEVIFTAGFDNKVWRVPLCEGECG 403 (612)
Q Consensus 372 --~i~~~~~~---~~~l~~~~~~~~i~~~~~~~~~~~ 403 (612)
....+..+ ...++.+..+|.+.++|..+++..
T Consensus 301 ~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i 337 (560)
T d1kv9a2 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (560)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence 11223332 246778889999999999888754
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.94 E-value=0.0091 Score=56.54 Aligned_cols=108 Identities=10% Similarity=0.087 Sum_probs=64.0
Q ss_pred EcCCcEEEEec-CCCCeeeeeeccCC--------ccccEEEEEEecC----CCEEEEEeCCCcEEEEEeecCCCCCeeEe
Q 007229 209 SSDRKGLIYDG-KSGEKIGEFSSEDG--------HHGSIYAVSWSPD----GKKVLTVSADKSAKVWEILEDGSGGRVIK 275 (612)
Q Consensus 209 ~~dg~i~vwd~-~~~~~~~~~~~~~~--------~~~~v~~i~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 275 (612)
+.++.+...|. ++|+.+-++..... ....-..+++.++ ..+++.++.|+.|.-.|. ++++.+.
T Consensus 70 ~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda----~tG~~~w 145 (596)
T d1w6sa_ 70 SFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA----ETGETVW 145 (596)
T ss_dssp STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET----TTCCEEE
T ss_pred CCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecc----ccCceec
Confidence 33566666665 46777766521100 0001123455443 346888888999998898 8999988
Q ss_pred eeeccCccccceeeeeeeccCCEEEEEEc------CCEEEEEEcCCCCCCc
Q 007229 276 TFASSTSNAVEDMLVGCLWQNDHLITVSL------GGIISIFSASNLDKAP 320 (612)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~ 320 (612)
.+..................++.++++.. .|.|.-+|..+.+...
T Consensus 146 ~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W 196 (596)
T d1w6sa_ 146 KVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (596)
T ss_dssp EEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred cccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEE
Confidence 88654322222222233334777777764 4889999987766543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.82 E-value=0.015 Score=55.08 Aligned_cols=80 Identities=13% Similarity=-0.007 Sum_probs=49.2
Q ss_pred CeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCc-
Q 007229 472 GKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST- 550 (612)
Q Consensus 472 g~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~- 550 (612)
|.|.-||+.+++..-.... ..+...=.++..+.+++.|+.||.++-+|.++++.+.+.-.+....-.-+.|..||+
T Consensus 453 G~l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ 529 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ceEEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence 5788888888876322211 122222223345678888999999999999999998665333222222345556886
Q ss_pred EEEE
Q 007229 551 MVAT 554 (612)
Q Consensus 551 ~l~s 554 (612)
|++.
T Consensus 530 Yvav 533 (596)
T d1w6sa_ 530 YVAI 533 (596)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.77 E-value=0.0068 Score=57.31 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=67.7
Q ss_pred EEEEeecCCeEEEEeCCCCeeeecccccc----------cce-EEEEECCCCCeEEEEEcCCcEEEEecCCCCeeeeeec
Q 007229 162 RIATCGEDFLVNFYEGPPFKFKLSHREHS----------NFV-NCIRFSPDGSKLISVSSDRKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 162 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----------~~v-~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 230 (612)
++..++.++.|.-+|.++|+.+.++.... ..+ ..+.+. +..++.++.|+.+.-.|.++|+.+.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~ 156 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccC
Confidence 47777888889999999999887653211 011 122222 33577788899999999999998766532
Q ss_pred cCCccccE--EEEEEecCCCEEEEEeC------CCcEEEEEeecCCCCCeeEeeeecc
Q 007229 231 EDGHHGSI--YAVSWSPDGKKVLTVSA------DKSAKVWEILEDGSGGRVIKTFASS 280 (612)
Q Consensus 231 ~~~~~~~v--~~i~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~ 280 (612)
.......+ ...-..-++ .+++++. .|.|+-+|. .+++.+-.+...
T Consensus 157 ~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~----~TG~~~W~~~t~ 209 (573)
T d1kb0a2 157 FEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDA----ETGERKWRWFSV 209 (573)
T ss_dssp TTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEET----TTCCEEEEEESS
T ss_pred ccCCcceEEeecceEEEec-cEEEeeccccccccceEEEEec----CCccceeeeeec
Confidence 11111111 110011133 3444432 467999999 899888776543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.72 E-value=0.005 Score=58.12 Aligned_cols=246 Identities=10% Similarity=0.043 Sum_probs=139.9
Q ss_pred CCCEEEEecCCEEEEEeCCCCceeeEeccC----CCceEEEEECCCCCEEEEee-----CcCeEEEeecCCCceeeeeee
Q 007229 29 KTDTILYCNGRSVLIRYLDKPLHVEFYGEH----GYPVTVARYSPNGEWIASAD-----VSGSVRIWGTHNGFVLKNEFK 99 (612)
Q Consensus 29 d~~~l~~~~~~~i~i~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~las~~-----~d~~i~iwd~~~~~~~~~~~~ 99 (612)
+++.++...++.++-.|.++|+.+-...-. ...++.--.-.++..++.++ .+|.|+-+|+.+++.+.+...
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence 344444444888998999999876543211 11122111112444444332 367899999999986543221
Q ss_pred ec------------------------------------CCCe-EEEEECCCCCEEEEEeCCCC-------------eeeE
Q 007229 100 VL------------------------------------SGRI-DDLQWSPDGLRIVACGDGKG-------------KSFV 129 (612)
Q Consensus 100 ~~------------------------------------~~~i-~~~~~s~~~~~l~~~~~~~~-------------~~~i 129 (612)
.. .+.+ ...++.++...+........ ...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv 274 (571)
T d2ad6a1 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence 10 0111 23455566665554443210 1134
Q ss_pred EEEEecCCceeeeeccCCce-----------EEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccccc---------
Q 007229 130 RAFMWDSGTTVGDFDGHSRR-----------VLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREH--------- 189 (612)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------- 189 (612)
...+.++|+.+..++.+... ...+.........++.++.+|.+.+.|..+++.+...+..
T Consensus 275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~ 354 (571)
T d2ad6a1 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV 354 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence 45566688888777643221 1222222222235778889999999999998876421100
Q ss_pred ----------------------------ccc--eEEEEECCCCCeEEEEEcC----------------------------
Q 007229 190 ----------------------------SNF--VNCIRFSPDGSKLISVSSD---------------------------- 211 (612)
Q Consensus 190 ----------------------------~~~--v~~~~~s~~~~~l~~~~~d---------------------------- 211 (612)
.+. -...+++|+..+++....+
T Consensus 355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (571)
T d2ad6a1 355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence 000 0125677777666654322
Q ss_pred ---------CcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCc
Q 007229 212 ---------RKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTS 282 (612)
Q Consensus 212 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 282 (612)
|.|.-+|+.+|+.+-+.... .+..+-.....+.++++++.||.++-+|. ++++.+-+++....
T Consensus 435 ~~~~~~~~~G~l~AiD~~TG~~~W~~~~~----~~~~~g~l~TagglVf~G~~dg~l~A~Da----~tGe~lW~~~l~~~ 506 (571)
T d2ad6a1 435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKALDN----KDGKELWNFKMPSG 506 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEET----TTCCEEEEEECSSC
T ss_pred cCCcccCCcccEEEeccCCCceeeEcCCC----CCCCcceeEecCCEEEEECCCCeEEEEEC----CCCcEEEEEECCCC
Confidence 45777888888887766322 11111112334667888999999999999 99999998887753
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.70 E-value=0.0095 Score=51.66 Aligned_cols=189 Identities=15% Similarity=0.138 Sum_probs=107.0
Q ss_pred ceEEEEECCCCCEEEEeeC------------cCeEEEeecCCCceeeeeeeecCC-------CeEEEEE--CCCCC-EEE
Q 007229 61 PVTVARYSPNGEWIASADV------------SGSVRIWGTHNGFVLKNEFKVLSG-------RIDDLQW--SPDGL-RIV 118 (612)
Q Consensus 61 ~v~~~~~s~d~~~las~~~------------d~~i~iwd~~~~~~~~~~~~~~~~-------~i~~~~~--s~~~~-~l~ 118 (612)
.-..++..|||..+++++. .|.|.++|+.+.+.....+..... ....+.. .+||+ +|+
T Consensus 36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 3446888899987776542 489999999876553333332221 2233333 45666 455
Q ss_pred EEeCCCCeeeEEEEEecCCc-eee---eec-cCCceEEEEEEcCCCCEEEEEee-----------------cCCeEEEEe
Q 007229 119 ACGDGKGKSFVRAFMWDSGT-TVG---DFD-GHSRRVLSCEFKPTRPFRIATCG-----------------EDFLVNFYE 176 (612)
Q Consensus 119 ~~~~~~~~~~i~i~~~~~~~-~~~---~~~-~~~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~~wd 176 (612)
+.........+.++.++... .+. ++. ........+++..++. +++|-. .-+.+.-||
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 55543334468888887433 221 122 1224578888888887 477621 123444454
Q ss_pred CCCCeeeecccccccceEEEEECCCCCeEEEEE-cCCcEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEe
Q 007229 177 GPPFKFKLSHREHSNFVNCIRFSPDGSKLISVS-SDRKGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVS 254 (612)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 254 (612)
... ..... ..-...+.++++||+++|+.+. ..+.|++|++.....+...... .-....-.+.+.+++..+.+++
T Consensus 195 ~~~--~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 195 PND--VRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SSC--EEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred CCc--eEEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEEEEE
Confidence 433 32222 2335688999999999876654 4688999998755433322111 2344566777776433344443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.68 E-value=0.014 Score=50.86 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=118.3
Q ss_pred EEEECC---CCCEEEEee-CcCeEEEeecCCCceeeeeeeecCCCeEEEEECC--CCCEEEEEeCCCC------------
Q 007229 64 VARYSP---NGEWIASAD-VSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSP--DGLRIVACGDGKG------------ 125 (612)
Q Consensus 64 ~~~~s~---d~~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~------------ 125 (612)
.+.+.. ||+||.... .+.+|.+-|+.+.+............+..++..+ +-.|++..+....
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455554 899998875 6788999999998843222223455677777654 4567776665330
Q ss_pred ---eeeEEEEEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCC--------------eEEEEe------------
Q 007229 126 ---KSFVRAFMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDF--------------LVNFYE------------ 176 (612)
Q Consensus 126 ---~~~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------------~i~~wd------------ 176 (612)
...+.+.+.++.+......- ......++++++|++.++++.... .+.+++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 11233444555555555442 234567899999998777763211 223333
Q ss_pred -----------CCCC---eeeecccccccceEEEEECCCCCeEEEEEc-CCcEEEEecCCCCee--------eeeeccCC
Q 007229 177 -----------GPPF---KFKLSHREHSNFVNCIRFSPDGSKLISVSS-DRKGLIYDGKSGEKI--------GEFSSEDG 233 (612)
Q Consensus 177 -----------~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~--------~~~~~~~~ 233 (612)
.... ..+..+. -......+.++|||+++++++. +.++.|+|++.-... ..+.....
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence 2211 1111111 1223567899999999987765 899999998632111 01100112
Q ss_pred ccccEEEEEEecCCCEEEEEeCCCcEEEEEe
Q 007229 234 HHGSIYAVSWSPDGKKVLTVSADKSAKVWEI 264 (612)
Q Consensus 234 ~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~ 264 (612)
..-.....+|...|.-..+.--|..|.-|++
T Consensus 327 lglgPLht~fd~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred cCcCccccccCCCceEEEEeeccceEEEEec
Confidence 3344567789888865555557999999998
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.67 E-value=0.025 Score=53.42 Aligned_cols=82 Identities=9% Similarity=-0.013 Sum_probs=52.0
Q ss_pred CCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCc
Q 007229 471 NGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSST 550 (612)
Q Consensus 471 dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 550 (612)
.|.|.-+|+.+++..-..... .++..-.++..+.+++.++.||.++-+|.++++.+.+.-.+....-.-+.|..||+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 467888888888763222211 22222223446778888999999999999999998665443333233366677886
Q ss_pred -EEEEe
Q 007229 551 -MVATG 555 (612)
Q Consensus 551 -~l~s~ 555 (612)
|++..
T Consensus 542 qYv~i~ 547 (582)
T d1flga_ 542 QYLGVT 547 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 55543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.63 E-value=0.027 Score=52.84 Aligned_cols=112 Identities=9% Similarity=0.053 Sum_probs=61.8
Q ss_pred EEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccce------eeeeeeccCCEEEEEEcCCEEEEEEcCCCCCCcee
Q 007229 249 KVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVED------MLVGCLWQNDHLITVSLGGIISIFSASNLDKAPLS 322 (612)
Q Consensus 249 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (612)
.|++++.++.|.-.|. .+++.+-++.......... ........++.++.++.++.+.-.|..+.+.....
T Consensus 68 ~vyv~t~~~~v~AlDa----~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDA----ASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp EEEEEEGGGEEEEEET----TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeC----CCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 4556667788888888 8888887764332211110 11122223678889999999988886665443322
Q ss_pred ecC-ccc--ceeEEEEEecCCcEEEEEec------CCcEEEEEcCCceeeeec
Q 007229 323 FSG-HVK--NVSTLTALKISQQTILSSSY------DGAIIKWIRGVGYSSKLE 366 (612)
Q Consensus 323 ~~~-~~~--~v~~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~ 366 (612)
... +.. .++...... ...++.+.. .|.|.-+|.++++..-..
T Consensus 144 ~~~~~~~~~~~~~~p~v~--~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 194 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (560)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CccCcccceeeeeeeeee--cCcccccccceeccccceEEEEECCCceEEeee
Confidence 111 111 111111111 445555433 367999999988876643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.021 Score=47.50 Aligned_cols=184 Identities=10% Similarity=-0.102 Sum_probs=114.1
Q ss_pred EEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecC----CceeeeeccCCc
Q 007229 73 WIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDS----GTTVGDFDGHSR 148 (612)
Q Consensus 73 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~----~~~~~~~~~~~~ 148 (612)
+|+.+.. ..|+-.++.+... ..+......+..++|.+..+.|.-...... .|.-..++. ......+.....
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~--~I~~~~l~~~~~~~~~~~~~~~~~~ 77 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQR--MICSTQLDRAHGVSSYDTVISRDIQ 77 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTT--EEEEEEC--------CEEEECSSCS
T ss_pred EEEEECC-CeEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCC--EEEEEEecCCCCCcceEEEEeCCCC
Confidence 3444433 3588888877652 233345567889999998888877654443 233334442 111222333345
Q ss_pred eEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEc--CCcEEEEecCCCCeee
Q 007229 149 RVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSS--DRKGLIYDGKSGEKIG 226 (612)
Q Consensus 149 ~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~ 226 (612)
.+..+++.+.+..+..+-...+.|.+.++........+.........+++.|...+|+.... .+.|.-.++.... ..
T Consensus 78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~ 156 (266)
T d1ijqa1 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IY 156 (266)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EE
T ss_pred CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-ee
Confidence 56789998877767777777889999998876655555555567899999997767766543 3456666654333 33
Q ss_pred eeeccCCccccEEEEEEecCCCEEEEEe-CCCcEEEEEe
Q 007229 227 EFSSEDGHHGSIYAVSWSPDGKKVLTVS-ADKSAKVWEI 264 (612)
Q Consensus 227 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~iw~~ 264 (612)
.+. ...-.....+++.+.++.|..+. ..+.|...++
T Consensus 157 ~l~--~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~ 193 (266)
T d1ijqa1 157 SLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193 (266)
T ss_dssp EEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccc--ccccceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence 331 12235568899998777776664 4566766666
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.01 E-value=0.14 Score=48.00 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=43.1
Q ss_pred cEEEEecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccC
Q 007229 213 KGLIYDGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASST 281 (612)
Q Consensus 213 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 281 (612)
.+.-||+.+|+.+-..... .+...-..+..+.++++++.||.++.+|. ++++.+-+++...
T Consensus 458 ~l~AiD~~tGk~~W~~~~~----~p~~gg~lstagglVF~G~~dg~l~A~Da----~TGe~LW~~~~~~ 518 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAYHA----ATGEKLWEAPTGT 518 (573)
T ss_dssp EEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEEECSS
T ss_pred cEEEeCCCCCceEeeecCC----CCCCCceEEEcCCEEEEECCCCeEEEEEC----CCCcEeEEEECCC
Confidence 4666777777777666322 11111123346778888999999999999 9999999988765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.87 E-value=0.15 Score=45.92 Aligned_cols=254 Identities=11% Similarity=0.041 Sum_probs=129.9
Q ss_pred CCceEEEEEEcCCCCEEEEEeecCC----eEEEEeCCCCeeeecccccccceEEEEECCCCCeEEEEEcC----------
Q 007229 146 HSRRVLSCEFKPTRPFRIATCGEDF----LVNFYEGPPFKFKLSHREHSNFVNCIRFSPDGSKLISVSSD---------- 211 (612)
Q Consensus 146 ~~~~v~~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------- 211 (612)
+.-.+...+++|++++++++-+.+| .++++|+.+++.+...- .......++|++|++.|+....+
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 3444556788999997666655444 89999999998765321 11223568899999988765433
Q ss_pred ------CcEEEEecCCCCeeeeeecc-CCccccEEEEEEecCCCEEEEEeC---CCcEEEEEeecCCCCCee--Eeeeec
Q 007229 212 ------RKGLIYDGKSGEKIGEFSSE-DGHHGSIYAVSWSPDGKKVLTVSA---DKSAKVWEILEDGSGGRV--IKTFAS 279 (612)
Q Consensus 212 ------g~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~--~~~~~~ 279 (612)
..+..+.+.+...-..+... ......+..+..++++++++.... +....+|-++........ ...+..
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 281 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence 24777777665432222111 122345667788999998875433 334455544211111110 000000
Q ss_pred cCccccceeeeeeeccCCEEEEEEc----CCEEEEEEcCCCCCC-ceee-cCcccceeEEEEEecCCcEEE-EEecCC--
Q 007229 280 STSNAVEDMLVGCLWQNDHLITVSL----GGIISIFSASNLDKA-PLSF-SGHVKNVSTLTALKISQQTIL-SSSYDG-- 350 (612)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~l~-~~~~dg-- 350 (612)
... ........+...++.++..+. ++.+...++...... ...+ ..+...+..-.+.-. +..|+ ....++
T Consensus 282 ~~~-~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~-~~~lvl~~~~~~~~ 359 (430)
T d1qfma1 282 LID-NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKN 359 (430)
T ss_dssp EEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEE
T ss_pred eec-ccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEE-CCEEEEEEEcCCEe
Confidence 000 001111112223444444432 456666676654432 2233 334444433333321 44554 444554
Q ss_pred cEEEEEcCCceeeeeceecccceEEEEe--ecc-EEEE-ecC--CCeEEEEecCCCCC
Q 007229 351 AIIKWIRGVGYSSKLEKKYDARIKCLAA--VEE-VIFT-AGF--DNKVWRVPLCEGEC 402 (612)
Q Consensus 351 ~i~~wd~~~~~~~~~~~~~~~~i~~~~~--~~~-~l~~-~~~--~~~i~~~~~~~~~~ 402 (612)
.|++++..++..........+.+..+.. ..+ ..+. .+. =.++..+|+.+++.
T Consensus 360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 4788999888776654444455555544 222 2222 111 23677777776654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.71 E-value=0.15 Score=43.68 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=52.0
Q ss_pred eeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccce---eec--cccCceEEEEEcC----CCcEEEEEcCC
Q 007229 445 SKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEM---VLE--KHRGAITVIQYSP----DVSMFASADGN 515 (612)
Q Consensus 445 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~---~~~--~~~~~i~~~~~s~----~~~~l~~~~~d 515 (612)
+.+.....+..|++.+..+.|+++-++..++.++.+........ ... ...+.+-.|+.-. +|-+|++.-.+
T Consensus 174 r~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~ 253 (353)
T d1h6la_ 174 RAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN 253 (353)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred eccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence 33444556888999999999999988887777776422111011 111 1344566666532 33455666678
Q ss_pred CeEEEEecCCc
Q 007229 516 REAIVWDRVSK 526 (612)
Q Consensus 516 ~~i~iwd~~~~ 526 (612)
++..+||..+.
T Consensus 254 n~f~vydr~~~ 264 (353)
T d1h6la_ 254 SSYAIYERQGQ 264 (353)
T ss_dssp TEEEEEESSTT
T ss_pred CeEEEEecCCC
Confidence 89999999875
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.18 E-value=0.52 Score=44.10 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=47.7
Q ss_pred CeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecc-cccCeeeEEEe-cCc
Q 007229 516 REAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNA-HLGGVYGVAFM-DDF 593 (612)
Q Consensus 516 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~-~~~ 593 (612)
|.+.-+|+.+++.+.+...+ .++..-..+..+.++++|+.||.++-+|.++ + +.+-.++- ....-.-+.|. +++
T Consensus 466 G~l~AiD~~TG~i~W~~~~~--~p~~~g~lstagglVF~Gt~dg~l~A~Da~T-G-e~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-G-KELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTT-C-CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CeEEEEcCCCCcEEeecCCC--CCCccceeEEcCCeEEEeCCCCeEEEEECCC-C-cEeEEEECCCCccccCEEEEECCE
Confidence 56788888888887654332 2333323344677888899999999999999 5 44443332 22222235677 776
Q ss_pred e
Q 007229 594 N 594 (612)
Q Consensus 594 ~ 594 (612)
.
T Consensus 542 q 542 (582)
T d1flga_ 542 Q 542 (582)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.58 E-value=0.33 Score=37.06 Aligned_cols=213 Identities=14% Similarity=0.163 Sum_probs=115.0
Q ss_pred CcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEe---eccEEEEe------cCCCeEEEEecCCCCCCccceecc
Q 007229 340 QQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAA---VEEVIFTA------GFDNKVWRVPLCEGECGDAEHIDV 410 (612)
Q Consensus 340 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~~~~ 410 (612)
.++++.+...|.+.++-+..++...+... +|..... .-+++..+ -.-..+...++.. ......+..
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~--~GEE~~i~s 100 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR--PGEEQRLEA 100 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTS--TTCEEECTT
T ss_pred CcEEEEEeccceEEEEEEeCCEEEEEecc---cccCcCCCccCcceEEEEeehhcCcceeeEEEEccCC--CCeeeEecC
Confidence 56888888999999999888877776432 2221111 11111111 1111334444432 122334444
Q ss_pred CCCcceeeecCCCCcEEEEEeec-cEE--Eeeccc--ceeeecccceEEEEEEccCCCeEEE----EecCCeEEEEEccC
Q 007229 411 GSQPLDLSLALSSPELALVSTES-GVI--LLDSLK--VMSKIDLGFTVTACAIAPDGSEAIV----GGQNGKLHIYSISG 481 (612)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~----~~~dg~v~i~d~~~ 481 (612)
..+.+.++..-++..++.++..+ +.. +++.++ .+..++.-+-|+.+. +++++- ++.-....+-|+.+
T Consensus 101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~----~d~I~G~g~~~g~~~sfF~adl~S 176 (313)
T d2hu7a1 101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR----GDLIAGLGFFGGGRVSLFTSNLSS 176 (313)
T ss_dssp SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE----TTEEEEEEEEETTEEEEEEEETTT
T ss_pred CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc----CCeEEEEeeecCCcceEEEEeccc
Confidence 55566777777887777776654 333 334333 223333333333332 333321 11112344445555
Q ss_pred cccccceeeccccCceEEEEEcCCCcEEEEE----cCCCeEEEEecCCcceeeecccc------cccceeEEEecCCCcE
Q 007229 482 NTLTEEMVLEKHRGAITVIQYSPDVSMFASA----DGNREAIVWDRVSKEVKLNNMLF------HTARINCLAWSPSSTM 551 (612)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~ 551 (612)
+.+ ..+....+.++....+++.+. ++. ++..-| -+|+++++.....+.. ....|+-+-+.||+++
T Consensus 177 G~l---ri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L 251 (313)
T d2hu7a1 177 GGL---RVFDSGEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL 251 (313)
T ss_dssp EEE---EEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred CCE---EEecCCCCcccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence 553 455555566777777776665 332 222334 4488766653222221 2345777779999999
Q ss_pred EEEeecCcEEEEEEc
Q 007229 552 VATGSIDTCVIIYEI 566 (612)
Q Consensus 552 l~s~~~d~~i~iwd~ 566 (612)
++.+-.||.-++|.-
T Consensus 252 ~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 252 AVVARREGRSAVFID 266 (313)
T ss_dssp EEEEEETTEEEEEET
T ss_pred EEEEecCCchheeec
Confidence 999999999999973
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.46 E-value=0.64 Score=39.63 Aligned_cols=203 Identities=13% Similarity=0.218 Sum_probs=116.5
Q ss_pred CCCCEEEEeeCcCeEEEeecCCCceeeeeeeecCCCeEEEEE------CCCCCEEEEEeCCC-CeeeEEEEEec-CCcee
Q 007229 69 PNGEWIASADVSGSVRIWGTHNGFVLKNEFKVLSGRIDDLQW------SPDGLRIVACGDGK-GKSFVRAFMWD-SGTTV 140 (612)
Q Consensus 69 ~d~~~las~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~------s~~~~~l~~~~~~~-~~~~i~i~~~~-~~~~~ 140 (612)
|+..+++.....+-|.+||++ ++.+.. + ..+.++.+.. .....-+++++... ....+.+|..+ ....+
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~-~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHS-Y--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEE-C--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEe-c--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 345677777777779999996 443332 2 2345555443 23333456666442 12245666665 33344
Q ss_pred eeeccCC-------ceEEEEEE--cCC-CCEEEEEeecCCeEEEEeC---CCC----eeeecccccccceEEEEECCCCC
Q 007229 141 GDFDGHS-------RRVLSCEF--KPT-RPFRIATCGEDFLVNFYEG---PPF----KFKLSHREHSNFVNCIRFSPDGS 203 (612)
Q Consensus 141 ~~~~~~~-------~~v~~~~~--~~~-~~~~l~~~~~d~~i~~wd~---~~~----~~~~~~~~~~~~v~~~~~s~~~~ 203 (612)
..+.... ..+..+++ +|. +...++....+|.+..|.+ ..+ +.++.+. -...+..+.+.+..+
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~ 192 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYG 192 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTT
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCC
Confidence 4443221 23566666 665 4444667777899988865 222 2333343 345688999999888
Q ss_pred eEEEEEcCCcEEEEecCC--CCeeeeeec--cCCccccEEEEEEec--CCC-EEEEE-eCCCcEEEEEeecCCCC-CeeE
Q 007229 204 KLISVSSDRKGLIYDGKS--GEKIGEFSS--EDGHHGSIYAVSWSP--DGK-KVLTV-SADKSAKVWEILEDGSG-GRVI 274 (612)
Q Consensus 204 ~l~~~~~dg~i~vwd~~~--~~~~~~~~~--~~~~~~~v~~i~~~~--~~~-~l~~~-~~dg~i~iw~~~~~~~~-~~~~ 274 (612)
.|+.+-++..++.++.+- +.....+.. .......+..++.-. +++ +|++. -.+++..+||. .. .+.+
T Consensus 193 ~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr----~~~~~~~ 268 (353)
T d1h6la_ 193 SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER----QGQNKYV 268 (353)
T ss_dssp EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES----STTCCEE
T ss_pred cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec----CCCcccc
Confidence 999988877676666542 121111111 112456788887654 323 44444 45788999997 44 4666
Q ss_pred eeeecc
Q 007229 275 KTFASS 280 (612)
Q Consensus 275 ~~~~~~ 280 (612)
..|...
T Consensus 269 g~F~i~ 274 (353)
T d1h6la_ 269 ADFQIT 274 (353)
T ss_dssp EEEEEC
T ss_pred ceEEEe
Confidence 666543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.34 E-value=0.71 Score=39.44 Aligned_cols=186 Identities=9% Similarity=-0.018 Sum_probs=110.2
Q ss_pred EEEEccCCCEEEEec-------------CCEEEEEeCCCCceee-Ee--ccCC-----CceEEEE--ECCCCC-EEEEee
Q 007229 23 LISGNPKTDTILYCN-------------GRSVLIRYLDKPLHVE-FY--GEHG-----YPVTVAR--YSPNGE-WIASAD 78 (612)
Q Consensus 23 ~~~~s~d~~~l~~~~-------------~~~i~i~~~~~~~~~~-~~--~~h~-----~~v~~~~--~s~d~~-~las~~ 78 (612)
.++..|||..+++++ .|.|.++|+++..... .+ .+.. -....+. -.+||+ +|++..
T Consensus 39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn 118 (340)
T d1v04a_ 39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 118 (340)
T ss_dssp EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence 588899998887764 2789999988654322 11 1110 1122333 255666 455542
Q ss_pred ---CcCeEEEeecCCCceeeeeee----ecCCCeEEEEECCCCCEEEEEeCCC------------CeeeEEEEEecCCce
Q 007229 79 ---VSGSVRIWGTHNGFVLKNEFK----VLSGRIDDLQWSPDGLRIVACGDGK------------GKSFVRAFMWDSGTT 139 (612)
Q Consensus 79 ---~d~~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~~~------------~~~~i~i~~~~~~~~ 139 (612)
...+|.+|++........... ......+.+++..++..+++-.... ......++.|+.++.
T Consensus 119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~ 198 (340)
T d1v04a_ 119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV 198 (340)
T ss_dssp CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence 456799998865442111111 1123578999999998888732111 001346778886654
Q ss_pred eeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEE
Q 007229 140 VGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVS 209 (612)
Q Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~ 209 (612)
.... ..-.....++++|++++++++-+..+.|+.|++........ ...-....-.+.+.+++..+.+++
T Consensus 199 ~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 199 RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 3322 33456789999999998888888899999998764432221 112334566777876443444444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.81 E-value=1.1 Score=38.69 Aligned_cols=180 Identities=6% Similarity=-0.087 Sum_probs=101.5
Q ss_pred CceEEEEECCCCCEEEEeeCcCeEEEeecCCC--------ceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEE
Q 007229 60 YPVTVARYSPNGEWIASADVSGSVRIWGTHNG--------FVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRA 131 (612)
Q Consensus 60 ~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i 131 (612)
....-+++++...+++.|+.++ ++|-..+.- ..........-..|..++|+.| .|+....++ +..
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~~~~----l~~ 109 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVSTRNA----LYS 109 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEESSE----EEE
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEeCCC----EEE
Confidence 4566889999888898888775 566653211 0011111222346899999755 466554443 233
Q ss_pred EEecCCceeeeeccCCceEEEEEEcCCCCEEEEEeecCCeEEEEeCCCCeeeeccc-----ccccceEEEEECCCCCeEE
Q 007229 132 FMWDSGTTVGDFDGHSRRVLSCEFKPTRPFRIATCGEDFLVNFYEGPPFKFKLSHR-----EHSNFVNCIRFSPDGSKLI 206 (612)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~ 206 (612)
+....-........-..++..+..+|. .++....++.+.++++..++...... .-.+.+.+++|++.|+.++
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v 186 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF 186 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred EEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence 333332233333334567888888886 46777778999999988876433211 1235577777777777776
Q ss_pred EEEcCCcEEEE-ecCCCCeeeeeeccCCccccEEEEEEecCCCEEEEE
Q 007229 207 SVSSDRKGLIY-DGKSGEKIGEFSSEDGHHGSIYAVSWSPDGKKVLTV 253 (612)
Q Consensus 207 ~~~~dg~i~vw-d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 253 (612)
++..+ ...+- ++... ..+..+......+.+|.|..+..++++-
T Consensus 187 ~~~g~-~~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 187 AWRNG-EMEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEETT-EEEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EeCCC-ceeeccCCCCc---cccCCCcCCCcceeEEEEecCceEEEEE
Confidence 65322 11111 11111 1111111234578899999776666554
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.93 Score=37.55 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=47.6
Q ss_pred EEEEeecC-----CeEEEEeCCCCeeeecccc-cccceEEEEECCCCCeEEEEEcC-----CcEEEEecCCCCeeeeeec
Q 007229 162 RIATCGED-----FLVNFYEGPPFKFKLSHRE-HSNFVNCIRFSPDGSKLISVSSD-----RKGLIYDGKSGEKIGEFSS 230 (612)
Q Consensus 162 ~l~~~~~d-----~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~ 230 (612)
+++.|+.+ ..+..||..+.+....-.. ....-.++.. .+++.++.++.+ .....+|..+.+....-..
T Consensus 151 ~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (288)
T d1zgka1 151 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 229 (288)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred ceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCc
Confidence 45555543 4567888776654432111 1111112222 234555555443 3466778766554432211
Q ss_pred cCCccccEEEEEEecCCCEEEEEeCCC-----cEEEEEe
Q 007229 231 EDGHHGSIYAVSWSPDGKKVLTVSADK-----SAKVWEI 264 (612)
Q Consensus 231 ~~~~~~~v~~i~~~~~~~~l~~~~~dg-----~i~iw~~ 264 (612)
+ ....-.+++. .+++.++.|+.++ .+.+||+
T Consensus 230 p--~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~ 265 (288)
T d1zgka1 230 K--HRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDP 265 (288)
T ss_dssp S--SCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred c--CcccceEEEE-ECCEEEEEecCCCCeecceEEEEEC
Confidence 1 1111112232 3678888776553 3678887
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.57 E-value=2.3 Score=37.85 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=63.2
Q ss_pred CceeEEEEccCCCEEEEec-CCEEEEEeCCCCceeeEe--------ccCCCceEEEEECCC---CCEEEEe-e------C
Q 007229 19 GRGILISGNPKTDTILYCN-GRSVLIRYLDKPLHVEFY--------GEHGYPVTVARYSPN---GEWIASA-D------V 79 (612)
Q Consensus 19 ~~v~~~~~s~d~~~l~~~~-~~~i~i~~~~~~~~~~~~--------~~h~~~v~~~~~s~d---~~~las~-~------~ 79 (612)
....+|+|.|||+++++-. .|.|++++..+++..... ..-++....|+|+|+ ..++... + .
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 3678999999999998885 699999998877653321 112356778999995 3333332 1 0
Q ss_pred c----Ce--EEEeecCCCce-------eeeeee-ecCCCeEEEEECCCCCEEEEEeCC
Q 007229 80 S----GS--VRIWGTHNGFV-------LKNEFK-VLSGRIDDLQWSPDGLRIVACGDG 123 (612)
Q Consensus 80 d----~~--i~iwd~~~~~~-------~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~ 123 (612)
+ .. +..+....... +...+. .....-..|+|.|||.+.++.|+.
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~ 164 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCC
Confidence 0 12 33333332221 111111 111345789999999988888763
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.96 E-value=2.5 Score=36.36 Aligned_cols=178 Identities=7% Similarity=-0.095 Sum_probs=98.0
Q ss_pred CCceeEEEEccCCCEEEEecCCEEEEEeCC----------CC-ceeeEeccCCCceEEEEECCCCCEEEEeeCcCeEEEe
Q 007229 18 RGRGILISGNPKTDTILYCNGRSVLIRYLD----------KP-LHVEFYGEHGYPVTVARYSPNGEWIASADVSGSVRIW 86 (612)
Q Consensus 18 ~~~v~~~~~s~d~~~l~~~~~~~i~i~~~~----------~~-~~~~~~~~h~~~v~~~~~s~d~~~las~~~d~~i~iw 86 (612)
+.+..-++.++...++++++...++|-.++ .+ ...... .-..|..++|+.| .|+.. .++.+..+
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSL 110 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence 567889999999999999887778887632 11 111111 1236899999866 45554 44568888
Q ss_pred ecCCCceeeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEecCCceeeeec-----cCCceEEEEEEcCCCCE
Q 007229 87 GTHNGFVLKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWDSGTTVGDFD-----GHSRRVLSCEFKPTRPF 161 (612)
Q Consensus 87 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~ 161 (612)
+...-... .........+.++.+.|.. ++....++. +.++....++...... .-...+.+++|++.+.
T Consensus 111 ~~~~l~~~-~~~~~~~~~~~~~~~~p~~--~~l~~~~~~---~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk- 183 (381)
T d1xipa_ 111 DLEELSEF-RTVTSFEKPVFQLKNVNNT--LVILNSVND---LSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF- 183 (381)
T ss_dssp ESSSTTCE-EEEEECSSCEEEEEECSSE--EEEEETTSE---EEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE-
T ss_pred Eeeccccc-cccccccccccceecCCce--eEEEecCCC---EEEEEeccCccccccCCcceEEecCCceEEEEeCCcE-
Confidence 87765422 2333445678888888864 333333331 2344444443222111 1125577788888776
Q ss_pred EEEEeecCCeEEEE-eCCCCeeeecccccccceEEEEECCCCCeEEEE
Q 007229 162 RIATCGEDFLVNFY-EGPPFKFKLSHREHSNFVNCIRFSPDGSKLISV 208 (612)
Q Consensus 162 ~l~~~~~d~~i~~w-d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 208 (612)
.++++..++ ..+- ++.....+.........|.++.|..+..++++-
T Consensus 184 q~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 184 QSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 355553221 2111 111111111111234568899998766555543
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=92.50 E-value=2.3 Score=34.81 Aligned_cols=221 Identities=12% Similarity=0.019 Sum_probs=106.9
Q ss_pred ccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeeceecccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccc
Q 007229 327 VKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKKYDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAE 406 (612)
Q Consensus 327 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 406 (612)
...|..++.- ....+.-. ||.|..|-....-..-........+..+..-....+.. .|+.+..|..........
T Consensus 25 ~~~i~~va~G---~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~- 98 (273)
T d1jtdb_ 25 QSGVDAIAGG---YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTV- 98 (273)
T ss_dssp SSSEEEEEEC---SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCC-
T ss_pred CCCcEEEEcc---CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeecc-
Confidence 4457777654 33334344 89999997655443333333455666776633333333 489999998654432211
Q ss_pred eeccCCCcceeeecCCCCcEEEEEeeccEEEeecccc---eeeecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcc
Q 007229 407 HIDVGSQPLDLSLALSSPELALVSTESGVILLDSLKV---MSKIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNT 483 (612)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~ 483 (612)
..........++... .......+..+..|..... .........+..++- +.+......++.++.|-.....
T Consensus 99 ~~~~~~~~~~i~~~~---~~~~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~g~~~~~G~~~~g 172 (273)
T d1jtdb_ 99 PAEARSGVDAIAAGA---WASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG---GVYTALAVKNGGVIAWGDNYFG 172 (273)
T ss_dssp CGGGGSSCCEEEEET---TEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE---CSSEEEEEETTEEEEEECCTTS
T ss_pred ccccccceeEEeeec---ccccccccccceecccCCCCceeeeccCCceEEEEec---cceeeeeecccceeEeecccCC
Confidence 111111222222211 2222233455555542211 111112233444432 2233334567888888765433
Q ss_pred cccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCCcceeeecccccccceeEEEecCCCcEEEEeecCcEEEE
Q 007229 484 LTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVSKEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVII 563 (612)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~i 563 (612)
. ..........|..++....- .++. .||.|+-|=......+ .........|..|+-.... .++. .||.|+.
T Consensus 173 ~--~~~~~~~~~~v~~Is~G~~h-~~~l--~dG~v~~WG~n~~Gql-~~~~~~~~~v~~I~~G~~~-~~~l--~~g~v~~ 243 (273)
T d1jtdb_ 173 Q--TTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQT-TVPTEALSGVSAIASGEWY-SLAL--KNGKVIA 243 (273)
T ss_dssp T--TSCCGGGSSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTT-CCCGGGGSSCCEEEECSSC-EEEE--ETTEEEE
T ss_pred c--ccccccccCCccceecccee-eEEE--ecCcEEEcCCCCCCcc-CCCccCCCCcEEEEeCcce-EEEE--ECCEEEE
Confidence 2 12222344568877765432 3332 3799999954332221 1111123457777654333 3443 4899999
Q ss_pred EEccC
Q 007229 564 YEIGK 568 (612)
Q Consensus 564 wd~~~ 568 (612)
|=...
T Consensus 244 WG~~~ 248 (273)
T d1jtdb_ 244 WGSSR 248 (273)
T ss_dssp ESTTC
T ss_pred ECCCC
Confidence 95443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=2.6 Score=34.63 Aligned_cols=217 Identities=6% Similarity=-0.061 Sum_probs=96.9
Q ss_pred eEEEEeCCCCeeeec--ccccccceEEEEECCCCCeEEEEEc---------CCcEEEEecCCCCeeeeeeccCCccccEE
Q 007229 171 LVNFYEGPPFKFKLS--HREHSNFVNCIRFSPDGSKLISVSS---------DRKGLIYDGKSGEKIGEFSSEDGHHGSIY 239 (612)
Q Consensus 171 ~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 239 (612)
.+.+||+.+.+-... +......-..+.+ +++.++.|+. -..+.+||..+.+....-..+.... .-.
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~-~~~ 96 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRN-RIG 96 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCB-TCE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceec-cee
Confidence 678999888754332 3222212222222 4555555542 2457788877665543221111111 111
Q ss_pred EEEEecCCCEEEEEeCCCc-----EEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEEEcC-----CEEE
Q 007229 240 AVSWSPDGKKVLTVSADKS-----AKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITVSLG-----GIIS 309 (612)
Q Consensus 240 ~i~~~~~~~~l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~ 309 (612)
+ + .-+++.++.++.++. ...++. .+.......... ........+...+..++.++.+ ..+.
T Consensus 97 ~-~-~~~~~i~~~gg~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~ 167 (288)
T d1zgka1 97 V-G-VIDGHIYAVGGSHGCIHHNSVERYEP----ERDEWHLVAPML---TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 167 (288)
T ss_dssp E-E-EETTEEEEECCEETTEECCCEEEEET----TTTEEEECCCCS---SCCBSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred c-c-ccceeeEEecceecccccceeeeecc----ccCccccccccc---cccccceeeeeeecceEecCcccccccceEE
Confidence 2 2 225666666554433 334554 333222111111 1111112222334444444442 3466
Q ss_pred EEEcCCCCCCceeecCcccceeEEEEEecCCcEEEEEecC-----CcEEEEEcCCceeeeeceecc--cceEEEEeeccE
Q 007229 310 IFSASNLDKAPLSFSGHVKNVSTLTALKISQQTILSSSYD-----GAIIKWIRGVGYSSKLEKKYD--ARIKCLAAVEEV 382 (612)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~--~~i~~~~~~~~~ 382 (612)
.|+...................+..... +.+++.++.+ .....+|..+........... ....++..+++.
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l 245 (288)
T d1zgka1 168 CYYPERNEWRMITAMNTIRSGAGVCVLH--NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRI 245 (288)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEET--TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEE
T ss_pred Eeecccccccccccccccccccccccee--eeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEE
Confidence 6765443211111111111112233333 5666666544 346777877766655433211 122333446777
Q ss_pred EEEecCCC-----eEEEEecCCCC
Q 007229 383 IFTAGFDN-----KVWRVPLCEGE 401 (612)
Q Consensus 383 l~~~~~~~-----~i~~~~~~~~~ 401 (612)
++.|+.++ .+.+||+.+..
T Consensus 246 ~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 246 YVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp EEECCBCSSCBCCEEEEEETTTTE
T ss_pred EEEecCCCCeecceEEEEECCCCE
Confidence 77776544 46788877654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.60 E-value=2.1 Score=32.58 Aligned_cols=209 Identities=11% Similarity=0.111 Sum_probs=105.1
Q ss_pred CCCEEEEEeCCCcEEEEEeecCCCCCeeEeeeeccCccccceeeeeeeccCCEEEEE------EcCCEEEEEEcCCCCCC
Q 007229 246 DGKKVLTVSADKSAKVWEILEDGSGGRVIKTFASSTSNAVEDMLVGCLWQNDHLITV------SLGGIISIFSASNLDKA 319 (612)
Q Consensus 246 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~ 319 (612)
+.++++++...|.+.++-+ ..++.++--..+-. ........-+.+... -+...+.+-++..+...
T Consensus 25 ~d~ll~~~~seG~vni~~l----~g~~~vkLtkePI~-----~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE 95 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLY----DGGETVKLNREPIN-----SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEE 95 (313)
T ss_dssp TTEEEEEEEETTEEEEEEE----SSSSCEECCSSCCS-----EECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCE
T ss_pred CCcEEEEEeccceEEEEEE----eCCEEEEEeccccc-----CcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCee
Confidence 4457777778899999888 55554443222110 000001111122211 11224455555543333
Q ss_pred ceeecCcccceeEEEEEecCCcEEEEEecCCcEEEEEcCCceeeeecee---------cccceEEEEe---eccEEEEec
Q 007229 320 PLSFSGHVKNVSTLTALKISQQTILSSSYDGAIIKWIRGVGYSSKLEKK---------YDARIKCLAA---VEEVIFTAG 387 (612)
Q Consensus 320 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---------~~~~i~~~~~---~~~~l~~~~ 387 (612)
.+.-....-.|.++++.+ .....+|+......+|-++.++...+... ...-|..+.+ ...-++++.
T Consensus 96 ~~i~spk~vRI~S~~ydd--k~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~ad 173 (313)
T d2hu7a1 96 QRLEAVKPMRILSGVDTG--EAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSN 173 (313)
T ss_dssp EECTTSCSBEEEEEEECS--SCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred eEecCCceEEEEEeeecC--ceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEe
Confidence 222222223444444444 88899999999999999999887765432 2233444444 223355555
Q ss_pred C-CCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeecc---EEEee-cccceeeec---------ccceE
Q 007229 388 F-DNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESG---VILLD-SLKVMSKID---------LGFTV 453 (612)
Q Consensus 388 ~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~---------~~~~i 453 (612)
. .|.+++++...+... .+.-.-+.++..--..-+ ...++ ........+ .+-.|
T Consensus 174 l~SG~lri~tpkeGS~~-------------~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I 240 (313)
T d2hu7a1 174 LSSGGLRVFDSGEGSFS-------------SASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 240 (313)
T ss_dssp TTTEEEEEECCSSEEEE-------------EEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEE
T ss_pred cccCCEEEecCCCCccc-------------ceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEE
Confidence 5 888888876655432 111111112211111111 11112 111111111 22345
Q ss_pred EEEEEccCCCeEEEEecCCeEEEEE
Q 007229 454 TACAIAPDGSEAIVGGQNGKLHIYS 478 (612)
Q Consensus 454 ~~~~~s~~~~~l~~~~~dg~v~i~d 478 (612)
+-+-+.|++++++++-.||.-.++.
T Consensus 241 ~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 241 TWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred EeeeeCCCCcEEEEEecCCchheee
Confidence 5566888888888888888888876
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=87.93 E-value=5.8 Score=32.18 Aligned_cols=219 Identities=12% Similarity=0.022 Sum_probs=106.6
Q ss_pred cccceEEEEeeccEEEEecCCCeEEEEecCCCCCCccceeccCCCcceeeecCCCCcEEEEEeeccEEEeeccc---cee
Q 007229 369 YDARIKCLAAVEEVIFTAGFDNKVWRVPLCEGECGDAEHIDVGSQPLDLSLALSSPELALVSTESGVILLDSLK---VMS 445 (612)
Q Consensus 369 ~~~~i~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 445 (612)
....|..++.-....+... ||+|..|-.......-. .......+..++. .....++ -.+..+..|.... ...
T Consensus 24 ~~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~-~~~~~~~v~~v~~--G~~~~~a-l~dg~v~~wG~~~~gq~~~ 98 (273)
T d1jtdb_ 24 AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAA--GNYHSLA-LKDGEVIAWGGNEDGQTTV 98 (273)
T ss_dssp GSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSCCCEEEE--CSSEEEE-EETTEEEEEECCTTSTTCC
T ss_pred CCCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceee-eecccccceEEec--CCCceee-eeeeeeeccCCCcceeecc
Confidence 4566888888554544444 89999998765543311 1111122222222 2222222 2455666664211 111
Q ss_pred eecccceEEEEEEccCCCeEEEEecCCeEEEEEccCcccccceeeccccCceEEEEEcCCCcEEEEEcCCCeEEEEecCC
Q 007229 446 KIDLGFTVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLTEEMVLEKHRGAITVIQYSPDVSMFASADGNREAIVWDRVS 525 (612)
Q Consensus 446 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~iwd~~~ 525 (612)
.......+..++..... . ..-.|+.+..|....... ..........|..++-. . ..++ ...++.++.|-...
T Consensus 99 ~~~~~~~~~~i~~~~~~--~-~~~~dg~v~~~g~~~~~~--~~~~~~~~~~v~~~~~~-~-~~~~-~~~~g~~~~~G~~~ 170 (273)
T d1jtdb_ 99 PAEARSGVDAIAAGAWA--S-YALKDGKVIAWGDDSDGQ--TTVPAEAQSGVTALDGG-V-YTAL-AVKNGGVIAWGDNY 170 (273)
T ss_dssp CGGGGSSCCEEEEETTE--E-EEEETTEEEEEECCTTST--TSCCGGGGSSEEEEEEC-S-SEEE-EEETTEEEEEECCT
T ss_pred ccccccceeEEeeeccc--c-cccccccceecccCCCCc--eeeeccCCceEEEEecc-c-eeee-eecccceeEeeccc
Confidence 11122234444433222 2 223588899997543322 11111222345544432 2 2222 33478888897654
Q ss_pred cceeeecccccccceeEEEecCCCcEEEEeecCcEEEEEEccCCCcceeeeecccccCeeeEEEecCceEEEccCCCeEE
Q 007229 526 KEVKLNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGKPASSRITIKNAHLGGVYGVAFMDDFNVVSSGEDACIR 605 (612)
Q Consensus 526 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~i~ 605 (612)
.... .........|..++..... .++. .||.|+-|=....+ ++- ........|..|+-.+...++. .||.|.
T Consensus 171 ~g~~-~~~~~~~~~v~~Is~G~~h-~~~l--~dG~v~~WG~n~~G-ql~-~~~~~~~~v~~I~~G~~~~~~l--~~g~v~ 242 (273)
T d1jtdb_ 171 FGQT-TVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYK-QTT-VPTEALSGVSAIASGEWYSLAL--KNGKVI 242 (273)
T ss_dssp TSTT-SCCGGGSSSEEEEEECSSE-EEEE--ETTEEEEEECCTTS-TTC-CCGGGGSSCCEEEECSSCEEEE--ETTEEE
T ss_pred CCcc-cccccccCCccceecccee-eEEE--ecCcEEEcCCCCCC-ccC-CCccCCCCcEEEEeCcceEEEE--ECCEEE
Confidence 3332 1122245567777765332 2332 38999999765533 322 1222334577776444444444 389999
Q ss_pred EEE
Q 007229 606 VWR 608 (612)
Q Consensus 606 ~w~ 608 (612)
.|=
T Consensus 243 ~WG 245 (273)
T d1jtdb_ 243 AWG 245 (273)
T ss_dssp EES
T ss_pred EEC
Confidence 994
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.28 E-value=10 Score=33.42 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCceEEEEECCCCCEEEEeeCcCeEEEeecCCCceee-eee------eecCCCeEEEEECCC
Q 007229 59 GYPVTVARYSPNGEWIASADVSGSVRIWGTHNGFVLK-NEF------KVLSGRIDDLQWSPD 113 (612)
Q Consensus 59 ~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~~~~-~~~------~~~~~~i~~~~~s~~ 113 (612)
-...++|+|.|||++|++--.+|.|++++..+++... ..+ ..-++....++|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3466799999999999887667999999988775311 111 112356789999985
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=84.58 E-value=6.3 Score=29.38 Aligned_cols=133 Identities=11% Similarity=-0.025 Sum_probs=76.7
Q ss_pred ceeEEEEccCCCEEEEecCCEEEEEeCCCCceee------Ee-ccCCCceEEEEECCCCCEEEEeeCcCeEEEeecCCCc
Q 007229 20 RGILISGNPKTDTILYCNGRSVLIRYLDKPLHVE------FY-GEHGYPVTVARYSPNGEWIASADVSGSVRIWGTHNGF 92 (612)
Q Consensus 20 ~v~~~~~s~d~~~l~~~~~~~i~i~~~~~~~~~~------~~-~~h~~~v~~~~~s~d~~~las~~~d~~i~iwd~~~~~ 92 (612)
.+.-++|||+|++.++-.+ .++.=...+...+. .+ .+-=+.-..+-|.|.|-+-|+. ++.++-=...+.+
T Consensus 41 n~~~i~fsP~G~LyaVr~~-~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt--~~~LYr~~pPtn~ 117 (235)
T d1tl2a_ 41 NFKFLFLSPGGELYGVLND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--KDKLYKASPPQSD 117 (235)
T ss_dssp TCSEEEECTTSCEEEEETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--TTEEEEESCCCST
T ss_pred ceeEEEECCCCcEEEEECC-eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec--CcceecCCcCccc
Confidence 5677999999998888766 66654444332211 11 1122345678999999766666 3544333333332
Q ss_pred e------eeeeeeecCCCeEEEEECCCCCEEEEEeCCCCeeeEEEEEec--C---------CceeeeeccCCceEEEEEE
Q 007229 93 V------LKNEFKVLSGRIDDLQWSPDGLRIVACGDGKGKSFVRAFMWD--S---------GTTVGDFDGHSRRVLSCEF 155 (612)
Q Consensus 93 ~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~i~i~~~~--~---------~~~~~~~~~~~~~v~~~~~ 155 (612)
+ ....-...-..+..+-|.|+|.+.++.++ . ++.+. . ++.+. .++-....-+.|
T Consensus 118 ~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~~-~------l~k~~pP~~~~d~WL~~st~ig--r~~w~~~~fi~F 188 (235)
T d1tl2a_ 118 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQ-Q------FYKALPPVSNQDNWLARATKIG--QGGWDTFKFLFF 188 (235)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETT-E------EEEECCCSSTTCCHHHHCEEEE--SSSGGGEEEEEE
T ss_pred chhhhhhhhhhccCCcCceeEEEECCCceEEEEECC-c------EEEcCCCCCCCchhhhhhhhhc--cCcccCceEEEE
Confidence 2 11111112236789999999987777333 2 33333 1 11222 456667789999
Q ss_pred cCCCCEEEEE
Q 007229 156 KPTRPFRIAT 165 (612)
Q Consensus 156 ~~~~~~~l~~ 165 (612)
+|+|. +...
T Consensus 189 s~dG~-L~~v 197 (235)
T d1tl2a_ 189 SSVGT-LFGV 197 (235)
T ss_dssp CTTSC-EEEE
T ss_pred CCCCc-EEEE
Confidence 99998 3443
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.47 E-value=12 Score=31.09 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=65.9
Q ss_pred eEEEEEEccCCCeEEEEecCCeEEEEEccCcccc-------cceeeccccCceE-EEEEcCCCcEEEEEcCCCeEEEEec
Q 007229 452 TVTACAIAPDGSEAIVGGQNGKLHIYSISGNTLT-------EEMVLEKHRGAIT-VIQYSPDVSMFASADGNREAIVWDR 523 (612)
Q Consensus 452 ~i~~~~~s~~~~~l~~~~~dg~v~i~d~~~~~~~-------~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d~~i~iwd~ 523 (612)
.+..+.+..+...++.++..|.+..++.+.-... ....+.. ...+. .....+++..|++.+..|..+.-.+
T Consensus 145 ~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~-~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~ 223 (323)
T d1wp5a_ 145 QVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKL 223 (323)
T ss_dssp CEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred cccceeccCCCeEEEEEEecceeeEeecccccccCccccccccccccc-ccccchhhhccccccceeeeeeeheeecccc
Confidence 4556666666778888899999999987643221 0112222 23344 4445566778888888998887665
Q ss_pred CCccee---------eecccccccceeEEEecCCCcEEEEeecCcEEEEEEccC
Q 007229 524 VSKEVK---------LNNMLFHTARINCLAWSPSSTMVATGSIDTCVIIYEIGK 568 (612)
Q Consensus 524 ~~~~~~---------~~~~~~~~~~i~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 568 (612)
...... ..........+..+....+...|+..+..|.+.-.++..
T Consensus 224 ~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~~ 277 (323)
T d1wp5a_ 224 TEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp GGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred hhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhhh
Confidence 432221 111111223455555555555566666667665555543
|