Citrus Sinensis ID: 007251

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-
MIGSLTFLLAPVSSSSSSPFLSLHRLSCFHSSPSDILRATTRRLALAATKTRSITSMATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHccccccccccEEEcccEEEEEEcHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccEEEccccEEEEEccccccEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHccccccccccccccEEEcccEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccc
cccHHHHEccccccccccccccHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHccccEEccccEEEEEccHHHHHHHHHHHHHcccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHcccHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHcccEEEccccEEEEEccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHccccccccccEEEEEEEccEEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHEEEEcccccccccEEEEHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccc
MIGSLTFLlapvsssssspflslhrlscfhsspsdiLRATTRRLALAATktrsitsmateeentgnvKRELEKVFDLALkatvpnetdvrpLIAACTAKfgdyqcnnaMGLWSkikgkgtefkgpqpvgqaimknlppsemiescsvagpgfVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVvdfsspniakemhvgHLRSTIIGDSLARMLEFSNVEVLrrnhvgdwgtQFGMLIEYLFekfpnsedanETAIGELQEFYRRsknrfdsdpafKERAQQAVVRLqsgepkyhEAWAQICEISRKEFDKVYKRLRVDLEekgesfynpyipgvidelskqglveesqgaRVIFIEGVNIPLIIvksdggfnyasTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKragwlsaddstypkashvgfglvlgedgkrlRTRFSEVVRLVDLLDEAKNRSKAVLIergkdkewtEEELEQTAEAVGYGaakyfdlknnrltnytfsfdqmlndkgnTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
MIGSLTFLLAPVSSSSSSPFLSLHRLSCFHSSPSDILRATTRRLALAatktrsitsmateeentgnvkrELEKVFDLALkatvpnetdvrPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSspniakemhvghLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVrlqsgepkyhEAWAQICEISRKEFDKVYKRLRVDLeekgesfynpyipGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVgfglvlgedgkrlrTRFSEVVRlvdlldeaknrskavliergkdkewteeELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
MIGSLTFllapvsssssspflslhrlsCFHSSPSDIlrattrrlalaatktrSITSMATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKewteeeleqtaeaVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
*********************SLHRLSCFH*****ILRATTRRLAL************************LEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGT********************MIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP*********************************************PKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER*****W****LEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC***
*********APVSSS*************************************************GNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKML**************KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSK***************ELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
MIGSLTFLLA**********LSLHRLSCFHSSPSDILRATTRRLALAATKTRSITSM*********VKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
*I****F***PVSSSSSSP******LSCFHSSPSDILRATTRRLALAATKTRSITSMATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIGSLTFLLAPVSSSSSSPFLSLHRLSCFHSSPSDILRATTRRLALAATKTRSITSMATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query611 2.2.26 [Sep-21-2011]
P37880661 Arginine--tRNA ligase, cy yes no 0.929 0.859 0.47 1e-148
Q8KPU9584 Arginine--tRNA ligase OS= yes no 0.862 0.902 0.486 1e-148
Q6P1S4660 Arginine--tRNA ligase, cy yes no 0.911 0.843 0.467 1e-147
A7YW98660 Arginine--tRNA ligase, cy yes no 0.909 0.842 0.471 1e-147
Q5N643584 Arginine--tRNA ligase OS= yes no 0.862 0.902 0.484 1e-147
B0JLI8585 Arginine--tRNA ligase OS= yes no 0.839 0.876 0.493 1e-146
Q9D0I9660 Arginine--tRNA ligase, cy yes no 0.942 0.872 0.457 1e-145
P40329660 Arginine--tRNA ligase, cy yes no 0.909 0.842 0.461 1e-145
Q5RA20660 Arginine--tRNA ligase, cy yes no 0.882 0.816 0.473 1e-144
P54136660 Arginine--tRNA ligase, cy yes no 0.882 0.816 0.477 1e-144
>sp|P37880|SYRC_CRIGR Arginine--tRNA ligase, cytoplasmic OS=Cricetulus griseus GN=RARS PE=2 SV=1 Back     alignment and function desciption
 Score =  525 bits (1353), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 282/600 (47%), Positives = 385/600 (64%), Gaps = 32/600 (5%)

Query: 27  SCFH--SSPS-DILRATTRRL---------ALAATKTRSITSMATEEENTGNVKRELEKV 74
           +C H   SPS D LR    +L         +L A K R  T      +N  N+   L+ V
Sbjct: 31  NCGHLEDSPSLDQLREENLKLKYRLNILQRSLQAEKRRRPT------KNMININSRLQDV 84

Query: 75  FDLALKATVPNETDVRPLIAACT--AKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAI 132
           F  A+KA  P+  D  PL+   +   KFGDYQCN+AMG+   +K K  +   P+ + + I
Sbjct: 85  FGCAIKAAYPD-LDNPPLVVTPSQQPKFGDYQCNSAMGISQMLKAKEQKV-NPRGIAENI 142

Query: 133 MKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKL-RVKKAVVDFS 191
            K+LP +E I+   +AGPGF+NV L K+++++ +  +LV+GI+   P L   KK +VDFS
Sbjct: 143 TKHLPNNEYIDRVEIAGPGFINVHLRKDFVSEQLTNLLVNGIQL--PALGENKKVIVDFS 200

Query: 192 SPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNS 251
           SPNIAKEMHVGHLRSTIIG+S++R+ EF+  +VLR NHVGDWGTQFGMLI +L ++FP+ 
Sbjct: 201 SPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDQFPDY 260

Query: 252 EDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKE 311
              +   IG+LQ FY+ SK RFD++  FK+RA Q VV LQS +P + +AW  IC++SR E
Sbjct: 261 LTVS-PPIGDLQAFYKESKKRFDTEEEFKKRAYQCVVSLQSKDPDFIKAWNLICDVSRAE 319

Query: 312 FDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKS 371
           F+K+Y  L + L E+GESFY   +  ++ E   +G V+   G +++F+ G +IPL IVKS
Sbjct: 320 FNKIYDALDITLIERGESFYQDRMKDIVKEFEDKGYVQVDDGRKIVFVPGCSIPLTIVKS 379

Query: 372 DGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPK 431
           DGGF Y ++DLAA+  RL EEKA  IIYV D GQ +HF  +F+AA+  GW    D    +
Sbjct: 380 DGGFTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAVHFQTIFAAAQMIGWY---DPKVTQ 436

Query: 432 ASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTA 491
            +HVGFG+VLGED K+ +TR  E VRLVDLL E   RS   L E+ +DK  TEEEL    
Sbjct: 437 VTHVGFGVVLGEDKKKFKTRSGETVRLVDLLGEGLKRSMDKLKEKERDKVLTEEELTAAQ 496

Query: 492 EAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEEL 551
            ++ YG  KY DL +NRL +Y FSFD+ML+D+GNTA YLLYA  RI SI R +  D E L
Sbjct: 497 TSIAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANVDEEML 556

Query: 552 KKTG---SLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNC 608
           +K      +VLDH  E  LG  +L F E++++ L +L  + +C+Y+Y L+  FT FY +C
Sbjct: 557 QKAARETKIVLDHEKEWKLGRCILRFPEILQKMLDDLFLHTLCDYIYELATTFTEFYDSC 616
Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis. Modulates the secretion of AIMP1 and may be involved in generation of the inflammatory cytokine EMAP2 from AIMP1.
Cricetulus griseus (taxid: 10029)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9
>sp|Q8KPU9|SYR_SYNE7 Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2 Back     alignment and function description
>sp|Q6P1S4|SYRC_XENTR Arginine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=rars PE=2 SV=1 Back     alignment and function description
>sp|A7YW98|SYRC_BOVIN Arginine--tRNA ligase, cytoplasmic OS=Bos taurus GN=RARS PE=2 SV=1 Back     alignment and function description
>sp|Q5N643|SYR_SYNP6 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argS PE=3 SV=1 Back     alignment and function description
>sp|B0JLI8|SYR_MICAN Arginine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=argS PE=3 SV=1 Back     alignment and function description
>sp|Q9D0I9|SYRC_MOUSE Arginine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Rars PE=2 SV=2 Back     alignment and function description
>sp|P40329|SYRC_RAT Arginine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Rars PE=1 SV=2 Back     alignment and function description
>sp|Q5RA20|SYRC_PONAB Arginine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=RARS PE=2 SV=1 Back     alignment and function description
>sp|P54136|SYRC_HUMAN Arginine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=RARS PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query611
224064484590 predicted protein [Populus trichocarpa] 0.906 0.938 0.839 0.0
255546293592 arginyl-tRNA synthetase, putative [Ricin 0.911 0.940 0.822 0.0
225445067649 PREDICTED: arginyl-tRNA synthetase-like 0.990 0.932 0.767 0.0
449435790590 PREDICTED: arginine--tRNA ligase, cytopl 0.906 0.938 0.819 0.0
297738741691 unnamed protein product [Vitis vinifera] 0.990 0.875 0.718 0.0
15236164642 Arginyl-tRNA synthetase, class Ic [Arabi 0.957 0.911 0.757 0.0
2632106590 arginyl-tRNA synthetase [Arabidopsis tha 0.906 0.938 0.787 0.0
297799374590 arginyl-tRNA synthetase [Arabidopsis lyr 0.906 0.938 0.785 0.0
255580290615 arginyl-tRNA synthetase, putative [Ricin 0.934 0.928 0.753 0.0
2632103589 arginyl-tRNA synthetase [Arabidopsis tha 0.908 0.942 0.768 0.0
>gi|224064484|ref|XP_002301499.1| predicted protein [Populus trichocarpa] gi|222843225|gb|EEE80772.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  985 bits (2547), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/555 (83%), Positives = 502/555 (90%), Gaps = 1/555 (0%)

Query: 57  MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIK 116
           MA E+EN GN+K++L K+F L+L+ATVP E D+ PL+AACTAKFGDYQCNNAMGLWSKIK
Sbjct: 1   MAAEQENAGNLKQKLAKLFQLSLEATVPGEPDIEPLVAACTAKFGDYQCNNAMGLWSKIK 60

Query: 117 GK-GTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE 175
           G+ G EF+GP  VGQAIMKNLP SEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE
Sbjct: 61  GRPGIEFRGPPAVGQAIMKNLPQSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE 120

Query: 176 TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 235
           TWAPKL +K+AVVDFSSPNIAKEMHVGHLRSTIIGD+LA MLEFSNVEVLRRNHVGDWGT
Sbjct: 121 TWAPKLSIKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLASMLEFSNVEVLRRNHVGDWGT 180

Query: 236 QFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEP 295
           QFGMLIE+LFEKFPN ED NETAIG+LQ FY+ SK RFD D  FK+RAQ+AVVRLQSGE 
Sbjct: 181 QFGMLIEFLFEKFPNFEDVNETAIGDLQAFYKESKQRFDVDAEFKDRAQKAVVRLQSGEQ 240

Query: 296 KYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGAR 355
            Y +AWAQICEISR+EFD+VY+RL V LEEKGESFYNPYIPGVI+ L+ QGLVEES+GAR
Sbjct: 241 MYRKAWAQICEISRREFDQVYQRLGVHLEEKGESFYNPYIPGVIEALTNQGLVEESKGAR 300

Query: 356 VIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 415
           VIFIEG+NIPLI+VKSDGG+NYASTD+ ALWYRL EEKAEWIIYVTDVGQQ HFDM F A
Sbjct: 301 VIFIEGINIPLIVVKSDGGYNYASTDMTALWYRLTEEKAEWIIYVTDVGQQQHFDMFFKA 360

Query: 416 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 475
           AKRAGWL ADD  YPKASHVGFGLVLGEDGKR RTR +EVVRL DLLDEAK RSKA LIE
Sbjct: 361 AKRAGWLPADDRQYPKASHVGFGLVLGEDGKRFRTRSTEVVRLADLLDEAKTRSKAALIE 420

Query: 476 RGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHA 535
           RGK  EWTEEELEQTAEAVGYGA KY DLKNNRLTNYTF FDQMLNDKGNTAVYLLYAHA
Sbjct: 421 RGKAAEWTEEELEQTAEAVGYGAVKYADLKNNRLTNYTFDFDQMLNDKGNTAVYLLYAHA 480

Query: 536 RICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLY 595
           RICSIIRKSGKD  ELKKTG +VLDHADERALGLHLL F+EV+EEA TNLLPNV+CEYLY
Sbjct: 481 RICSIIRKSGKDTGELKKTGKIVLDHADERALGLHLLQFAEVVEEACTNLLPNVLCEYLY 540

Query: 596 NLSEYFTRFYSNCQV 610
           NLSE +TRFYSNCQV
Sbjct: 541 NLSENYTRFYSNCQV 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546293|ref|XP_002514206.1| arginyl-tRNA synthetase, putative [Ricinus communis] gi|223546662|gb|EEF48160.1| arginyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225445067|ref|XP_002280299.1| PREDICTED: arginyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435790|ref|XP_004135677.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis sativus] gi|449489808|ref|XP_004158422.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297738741|emb|CBI27986.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15236164|ref|NP_194360.1| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] gi|2632105|emb|CAB11468.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|4539426|emb|CAB38959.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|7269482|emb|CAB79485.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|332659782|gb|AEE85182.1| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2632106|emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799374|ref|XP_002867571.1| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] gi|297313407|gb|EFH43830.1| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255580290|ref|XP_002530974.1| arginyl-tRNA synthetase, putative [Ricinus communis] gi|223529450|gb|EEF31409.1| arginyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|2632103|emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query611
TAIR|locus:2136794642 emb1027 "embryo defective 1027 0.913 0.869 0.763 3e-236
TAIR|locus:2028982590 AT1G66530 [Arabidopsis thalian 0.908 0.940 0.752 8.7e-230
ZFIN|ZDB-GENE-030131-9014661 rars "arginyl-tRNA synthetase" 0.878 0.812 0.469 7.9e-133
UNIPROTKB|A7YW98660 RARS "Arginine--tRNA ligase, c 0.875 0.810 0.479 1e-132
UNIPROTKB|E2QRR5660 RARS "Uncharacterized protein" 0.882 0.816 0.477 1.3e-132
UNIPROTKB|J9P440643 RARS "Uncharacterized protein" 0.882 0.838 0.477 1.3e-132
UNIPROTKB|P54136660 RARS "Arginine--tRNA ligase, c 0.882 0.816 0.470 3.5e-130
RGD|1309215660 Rars "arginyl-tRNA synthetase" 0.882 0.816 0.462 9.3e-130
MGI|MGI:1914297660 Rars "arginyl-tRNA synthetase" 0.882 0.816 0.464 1.5e-129
UNIPROTKB|Q5ZM11661 RARS "Arginine--tRNA ligase, c 0.877 0.810 0.459 1.7e-128
TAIR|locus:2136794 emb1027 "embryo defective 1027" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2278 (807.0 bits), Expect = 3.0e-236, P = 3.0e-236
 Identities = 427/559 (76%), Positives = 488/559 (87%)

Query:    53 SITSMATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGL 111
             S+ +MA  EE TGN+KR+L K+FD++LK TVP+E  V PL+AA    KFGDYQCNNAMGL
Sbjct:    49 SVVAMAANEEFTGNLKRQLAKLFDVSLKLTVPDEPSVEPLVAASALGKFGDYQCNNAMGL 108

Query:   112 WSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLV 171
             WS IKGKGT+FKGP  VGQA++K+LP SEM+ESCSVAGPGF+NVVLS  WMAK+I+ ML+
Sbjct:   109 WSIIKGKGTQFKGPPAVGQALVKSLPTSEMVESCSVAGPGFINVVLSAKWMAKSIENMLI 168

Query:   172 DGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVG 231
             DG++TWAP L VK+AVVDFSSPNIAKEMHVGHLRSTIIGD+LARMLE+S+VEVLRRNHVG
Sbjct:   169 DGVDTWAPTLSVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSHVEVLRRNHVG 228

Query:   232 DWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQ 291
             DWGTQFGMLIEYLFEKFP+++   ETAIG+LQ FY+ SK++FD D AFKE+AQQAVVRLQ
Sbjct:   229 DWGTQFGMLIEYLFEKFPDTDSVTETAIGDLQVFYKASKHKFDLDEAFKEKAQQAVVRLQ 288

Query:   292 SGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEES 351
              G+P Y +AWA+IC+ISR EF KVY+RLRV+LEEKGESFYNP+I  VI+EL+ +GLVEES
Sbjct:   289 GGDPVYRKAWAKICDISRTEFAKVYQRLRVELEEKGESFYNPHIAKVIEELNSKGLVEES 348

Query:   352 QGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDM 411
             +GARVIF+EG +IPL++VKSDGGFNYASTDL ALWYRLNEEKAEWIIYVTDVGQQ HF+M
Sbjct:   349 EGARVIFLEGFDIPLMVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFNM 408

Query:   412 VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 471
              F AA++AGWL  +D TYP+ +HVGFGLVLGEDGKR RTR ++VVRLVDLLDEAK RSK 
Sbjct:   409 FFKAARKAGWLPDNDKTYPRVNHVGFGLVLGEDGKRFRTRATDVVRLVDLLDEAKTRSKL 468

Query:   472 VLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLL 531
              LIERGKDK             VGYGA KY DLKNNRLTNYTFSFDQMLNDKGNTAVYLL
Sbjct:   469 ALIERGKDKEWTPEELDQTAEAVGYGAVKYADLKNNRLTNYTFSFDQMLNDKGNTAVYLL 528

Query:   532 YAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVC 591
             YAHARICSIIRKSGKDI+ELKKTG L LDHADERALGLHLL F+E +EEA TNLLP+V+C
Sbjct:   529 YAHARICSIIRKSGKDIDELKKTGKLALDHADERALGLHLLRFAETVEEACTNLLPSVLC 588

Query:   592 EYLYNLSEYFTRFYSNCQV 610
             EYLYNLSE+FTRFYSNCQV
Sbjct:   589 EYLYNLSEHFTRFYSNCQV 607
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004814 "arginine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006420 "arginyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
TAIR|locus:2028982 AT1G66530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9014 rars "arginyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A7YW98 RARS "Arginine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRR5 RARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P440 RARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P54136 RARS "Arginine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309215 Rars "arginyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914297 Rars "arginyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZM11 RARS "Arginine--tRNA ligase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0JLI8SYR_MICAN6, ., 1, ., 1, ., 1, 90.49350.83960.8769yesno
A5GW85SYR_SYNR36, ., 1, ., 1, ., 1, 90.45590.86080.8915yesno
Q7U3V8SYR_SYNPX6, ., 1, ., 1, ., 1, 90.47230.81830.8375yesno
P40329SYRC_RAT6, ., 1, ., 1, ., 1, 90.46100.90990.8424yesno
P37880SYRC_CRIGR6, ., 1, ., 1, ., 1, 90.470.92960.8593yesno
Q9Z7Y3SYR_CHLPN6, ., 1, ., 1, ., 1, 90.42770.82970.9037yesno
Q46HI6SYR_PROMT6, ., 1, ., 1, ., 1, 90.44640.81990.8253yesno
Q253D1SYR_CHLFF6, ., 1, ., 1, ., 1, 90.43920.84120.9145yesno
Q8E9Y7SYR_SHEON6, ., 1, ., 1, ., 1, 90.43890.80030.8416yesno
Q8DKN4SYR_THEEB6, ., 1, ., 1, ., 1, 90.47880.85590.8955yesno
A1S2P7SYR_SHEAM6, ., 1, ., 1, ., 1, 90.42330.84120.8846yesno
B1X0N5SYR_CYAA56, ., 1, ., 1, ., 1, 90.47940.87070.9094yesno
Q5RA20SYRC_PONAB6, ., 1, ., 1, ., 1, 90.47370.88210.8166yesno
Q9D0I9SYRC_MOUSE6, ., 1, ., 1, ., 1, 90.45720.94270.8727yesno
P54136SYRC_HUMAN6, ., 1, ., 1, ., 1, 90.47730.88210.8166yesno
Q3M769SYR_ANAVT6, ., 1, ., 1, ., 1, 90.49330.83140.8639yesno
B7KCT7SYR_CYAP76, ., 1, ., 1, ., 1, 90.46480.86410.9025yesno
Q7V493SYR_PROMM6, ., 1, ., 1, ., 1, 90.44670.86410.8627yesno
Q3AGU9SYR_SYNSC6, ., 1, ., 1, ., 1, 90.46220.81660.8457yesno
Q5L6U4SYR_CHLAB6, ., 1, ., 1, ., 1, 90.42370.83630.9092yesno
Q31CZ4SYR_PROM96, ., 1, ., 1, ., 1, 90.45480.82160.8311yesno
Q3AVY5SYR_SYNS96, ., 1, ., 1, ., 1, 90.45390.87070.9016yesno
Q5N643SYR_SYNP66, ., 1, ., 1, ., 1, 90.48460.86250.9023yesno
Q8YQU9SYR_NOSS16, ., 1, ., 1, ., 1, 90.48760.83140.8639yesno
Q7VE03SYR_PROMA6, ., 1, ., 1, ., 1, 90.45780.86570.8772yesno
B2J6I0SYR_NOSP76, ., 1, ., 1, ., 1, 90.48500.82160.8595yesno
Q9PJT8SYR_CHLMU6, ., 1, ., 1, ., 1, 90.42260.81010.8792yesno
C1DHR7SYR_AZOVD6, ., 1, ., 1, ., 1, 90.42580.80520.8497yesno
Q10XL4SYR_TRIEI6, ., 1, ., 1, ., 1, 90.47740.87390.9128yesno
Q6MEP4SYR_PARUW6, ., 1, ., 1, ., 1, 90.44700.86250.9023yesno
Q9VXN4SYRC_DROME6, ., 1, ., 1, ., 1, 90.46070.88870.8165yesno
Q7V396SYR_PROMP6, ., 1, ., 1, ., 1, 90.43580.81340.8242yesno
Q5ZM11SYRC_CHICK6, ., 1, ., 1, ., 1, 90.44350.93610.8653yesno
Q0I6R7SYR_SYNS36, ., 1, ., 1, ., 1, 90.46300.81830.8474yesno
Q8KPU9SYR_SYNE76, ., 1, ., 1, ., 1, 90.48640.86250.9023yesno
A2C016SYR_PROM16, ., 1, ., 1, ., 1, 90.44460.81990.8253yesno
A9BDF0SYR_PROM46, ., 1, ., 1, ., 1, 90.45570.82810.8391yesno
B7JVP5SYR_CYAP86, ., 1, ., 1, ., 1, 90.45250.87070.9094yesno
A2CDB7SYR_PROM36, ., 1, ., 1, ., 1, 90.44670.86410.8756yesno
A7YW98SYRC_BOVIN6, ., 1, ., 1, ., 1, 90.47140.90990.8424yesno
B8HSK8SYR_CYAP46, ., 1, ., 1, ., 1, 90.48770.82810.8649yesno
Q6P1S4SYRC_XENTR6, ., 1, ., 1, ., 1, 90.46700.91160.8439yesno
B1XPX8SYR_SYNP26, ., 1, ., 1, ., 1, 90.47780.85430.8923yesno
Q2SMY0SYR_HAHCH6, ., 1, ., 1, ., 1, 90.41650.86410.9134yesno
A5GP97SYR_SYNPW6, ., 1, ., 1, ., 1, 90.47230.81830.8375yesno
Q824H4SYR_CHLCV6, ., 1, ., 1, ., 1, 90.42750.83630.9060yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.190.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_II3255
arginine-tRNA ligase (EC-6.1.1.19) (590 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0023017401
aspartate-tRNA ligase (EC-6.1.1.12) (530 aa)
   •••• 0.871
gw1.64.262.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1028 aa)
   •••• 0.847
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
•  •  • 0.838
gw1.VII.873.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1117 aa)
   •••• 0.831
gw1.XIX.1762.1
histidine-tRNA ligase (475 aa)
   •  • 0.814
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
      • 0.788
estExt_Genewise1_v1.C_LG_V3371
serine-tRNA ligase (EC-6.1.1.11) (447 aa)
   •  • 0.783
eugene3.00050325
alanyl-tRNA synthetase (EC-6.1.1.7) (973 aa)
   •  • 0.777
fgenesh4_pm.C_LG_X000986
hypothetical protein (932 aa)
   •• • 0.773
eugene3.29520003
annotation not avaliable (742 aa)
      • 0.772

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query611
PLN02286576 PLN02286, PLN02286, arginine-tRNA ligase 0.0
COG0018577 COG0018, ArgS, Arginyl-tRNA synthetase [Translatio 1e-156
PRK01611507 PRK01611, argS, arginyl-tRNA synthetase; Reviewed 1e-147
TIGR00456566 TIGR00456, argS, arginyl-tRNA synthetase 1e-130
pfam00750345 pfam00750, tRNA-synt_1d, tRNA synthetases class I 1e-106
PRK12451562 PRK12451, PRK12451, arginyl-tRNA synthetase; Revie 1e-98
cd00671212 cd00671, ArgRS_core, catalytic core domain of argi 3e-68
cd07956156 cd07956, Anticodon_Ia_Arg, Anticodon-binding domai 4e-35
pfam05746117 pfam05746, DALR_1, DALR anticodon binding domain 2e-22
smart00836122 smart00836, DALR_1, DALR anticodon binding domain 3e-21
pfam0348584 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetas 6e-16
smart0101685 smart01016, Arg_tRNA_synt_N, Arginyl tRNA syntheta 5e-13
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 1e-07
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase Back     alignment and domain information 
 Score = 1091 bits (2823), Expect = 0.0
 Identities = 435/543 (80%), Positives = 480/543 (88%), Gaps = 3/543 (0%)

Query: 69  RELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFKGPQP 127
           REL K+F+ +L+ TVP+E  V PL+AACT  KFGDYQCNNAMGLWSK+KGKGT FK P+ 
Sbjct: 1   RELAKLFEASLRLTVPDEPSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRA 60

Query: 128 VGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAV 187
           V QAI+KNLP SEMIES SVAGPGFVNV LS +W+AK I++MLVDGI+TWAP L VK+AV
Sbjct: 61  VAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAV 120

Query: 188 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEK 247
           VDFSSPNIAKEMHVGHLRSTIIGD+LARMLEFS VEVLRRNHVGDWGTQFGMLIE+LFEK
Sbjct: 121 VDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEK 180

Query: 248 FPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEI 307
           FPN E  ++ AIG+LQEFY+ +K RFD D  FK RAQQAVVRLQ G+P+Y  AWA+ICEI
Sbjct: 181 FPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEI 240

Query: 308 SRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLI 367
           SR+EF+KVY+RLRV+LEEKGESFYNPYIPGVI+EL  +GLV ES GARVIF+EG +IPLI
Sbjct: 241 SRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLI 300

Query: 368 IVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 427
           +VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ HFDMVF AAKRAGWL   + 
Sbjct: 301 VVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWL--PED 358

Query: 428 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEEL 487
           TYP+  HVGFGLVLGEDGKR RTR  EVVRLVDLLDEAK+RSKA LIERGKD EWT EEL
Sbjct: 359 TYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEEL 418

Query: 488 EQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKD 547
           EQ AEAVGYGA KY DLKNNRLTNYTFSFDQML+ KGNTAVYLLYAHARICSIIRKSGKD
Sbjct: 419 EQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKD 478

Query: 548 IEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSN 607
           I+ELKKTG +VLDH DERALGLHLL F EV+EEA T+LLPN +CEYLYNLSE FT+FYSN
Sbjct: 479 IDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSN 538

Query: 608 CQV 610
           C+V
Sbjct: 539 CKV 541

Length = 576
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R) Back     alignment and domain information
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|218729 pfam05746, DALR_1, DALR anticodon binding domain Back     alignment and domain information
>gnl|CDD|214846 smart00836, DALR_1, DALR anticodon binding domain Back     alignment and domain information
>gnl|CDD|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal domain Back     alignment and domain information
>gnl|CDD|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal dom Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 611
PLN02286576 arginine-tRNA ligase 100.0
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 100.0
KOG4426656 consensus Arginyl-tRNA synthetase [Translation, ri 100.0
PRK12451562 arginyl-tRNA synthetase; Reviewed 100.0
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 100.0
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 100.0
KOG1195567 consensus Arginyl-tRNA synthetase [Translation, ri 100.0
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 100.0
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 100.0
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 100.0
PLN02946 557 cysteine-tRNA ligase 100.0
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 99.98
PRK11893511 methionyl-tRNA synthetase; Reviewed 99.97
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 99.97
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.97
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 99.97
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 99.96
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 99.96
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 99.96
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 99.96
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.96
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.95
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.95
PRK12268556 methionyl-tRNA synthetase; Reviewed 99.95
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 99.95
PRK12267 648 methionyl-tRNA synthetase; Reviewed 99.95
PLN02224 616 methionine-tRNA ligase 99.94
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 99.92
PLN02610 801 probable methionyl-tRNA synthetase 99.91
KOG2007 586 consensus Cysteinyl-tRNA synthetase [Translation, 99.91
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 99.9
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 99.9
cd00674353 LysRS_core_class_I catalytic core domain of class 99.89
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.88
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 99.88
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 99.87
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 99.87
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 99.87
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 99.87
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.87
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 99.86
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 99.85
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 99.83
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 99.83
KOG0436578 consensus Methionyl-tRNA synthetase [Translation, 99.82
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.81
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 99.81
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 99.8
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 99.79
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 99.78
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 99.77
PLN02943 958 aminoacyl-tRNA ligase 99.76
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 99.74
PRK12558445 glutamyl-tRNA synthetase; Provisional 99.73
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.73
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 99.73
PF0348585 Arg_tRNA_synt_N: Arginyl tRNA synthetase N termina 99.72
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 99.7
PLN02843 974 isoleucyl-tRNA synthetase 99.69
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 99.69
PLN02381 1066 valyl-tRNA synthetase 99.69
PLN02882 1159 aminoacyl-tRNA ligase 99.68
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 99.67
cd00808239 GluRS_core catalytic core domain of discriminating 99.64
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 99.63
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 99.63
PLN02627535 glutamyl-tRNA synthetase 99.62
PLN02563 963 aminoacyl-tRNA ligase 99.58
PF00133 601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 99.58
PF05746119 DALR_1: DALR anticodon binding domain; InterPro: I 99.58
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 99.57
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 99.55
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 99.54
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 99.54
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 99.53
cd09287240 GluRS_non_core catalytic core domain of non-discri 99.52
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 99.48
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 99.48
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 99.48
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 99.48
smart00836122 DALR_1 DALR anticodon binding domain. This all alp 99.38
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 99.37
PLN03233 523 putative glutamate-tRNA ligase; Provisional 99.29
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 99.27
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 99.21
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 99.21
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 99.2
PLN02907 722 glutamate-tRNA ligase 99.19
KOG1247567 consensus Methionyl-tRNA synthetase [Translation, 99.16
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 99.15
KOG1149524 consensus Glutamyl-tRNA synthetase (mitochondrial) 99.15
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 99.15
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 99.13
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 99.0
PLN02859 788 glutamine-tRNA ligase 98.97
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 98.95
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 98.77
PLN02959 1084 aminoacyl-tRNA ligase 98.67
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 98.63
PLN02959 1084 aminoacyl-tRNA ligase 98.46
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 98.24
KOG0433 937 consensus Isoleucyl-tRNA synthetase [Translation, 98.17
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 98.08
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 97.49
PRK13354410 tyrosyl-tRNA synthetase; Provisional 97.34
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 97.27
PRK05912408 tyrosyl-tRNA synthetase; Validated 97.23
PRK08560329 tyrosyl-tRNA synthetase; Validated 97.1
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 97.07
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 97.04
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 97.02
PLN02486383 aminoacyl-tRNA ligase 96.92
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 96.09
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 95.99
KOG0433 937 consensus Isoleucyl-tRNA synthetase [Translation, 95.61
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 95.5
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 95.44
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 94.94
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 94.44
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 94.39
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 94.17
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 94.11
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 93.9
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 93.89
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 93.45
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 93.15
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 92.36
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 92.23
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 90.43
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 89.26
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 87.01
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 85.51
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 85.29
PRK01233682 glyS glycyl-tRNA synthetase subunit beta; Validate 82.51
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 81.49
>PLN02286 arginine-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=8.6e-125  Score=1055.18  Aligned_cols=537  Identities=80%  Similarity=1.287  Sum_probs=482.3

Q ss_pred             HHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhCCCCCCcceeEEecCc
Q 007251           73 KVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPG  151 (611)
Q Consensus        73 ~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~vevagpG  151 (611)
                      ..+.+++...++........++.| +++|||||||+||.|||.++++|++.++|++||++|++.|...+.|++|+|+|||
T Consensus         5 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpG   84 (576)
T PLN02286          5 KLFEASLRLTVPDEPSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPG   84 (576)
T ss_pred             HHHHHHHHHhcCcccccCeEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCC
Confidence            334444444443112223556656 7899999999999999999989988899999999999999766779999999999


Q ss_pred             eeEeecCHHHHHHHHHHHHHcCCCCCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccC
Q 007251          152 FVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVG  231 (611)
Q Consensus       152 fIN~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yin  231 (611)
                      ||||+|++.++.+.+..++..+..++.+..++++|+||||||||||||||||+|||||||+|||||+++||+|+|+||||
T Consensus        85 fiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyin  164 (576)
T PLN02286         85 FVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVG  164 (576)
T ss_pred             eEEEEECHHHHHHHHHHHHHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeec
Confidence            99999999999999998887665533333456899999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHH
Q 007251          232 DWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKE  311 (611)
Q Consensus       232 D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~  311 (611)
                      |||+||++++.++...+|+.+.+.+.+|.++..+|+++++.++++|++++++++.+.+||+||+++.++|++++++++.+
T Consensus       165 D~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~  244 (576)
T PLN02286        165 DWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRRE  244 (576)
T ss_pred             chHHHHHHHHHHHHHhcCcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999998887777765445667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeeeecccccccCcHHHHHHHHHhCCCceeecccEEEeccCCCCCeEEEccCCcccccCcchhHHHhhhhc
Q 007251          312 FDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNE  391 (611)
Q Consensus       312 ~~~~~~~LgV~f~~~~Es~y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~  391 (611)
                      |+++|++|||+||..+||+|.+.++++++.|+++|++|++|||+|+++++.++|+||+||||++||+|+|||||+||++.
T Consensus       245 ~~~~y~~l~V~fd~~ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~  324 (576)
T PLN02286        245 FEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNE  324 (576)
T ss_pred             HHHHHHHhCCeeeecCchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhc
Confidence            99999999999977789999998999999999999999999999999887667999999999999999999999999987


Q ss_pred             cCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHH
Q 007251          392 EKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA  471 (611)
Q Consensus       392 ~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~  471 (611)
                      +++|++|||||++|++||+||+++++++||.++  ++..++.|+.||||++.+|+|||||+|++|+|+|||++++.+|.+
T Consensus       325 ~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~  402 (576)
T PLN02286        325 EKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPE--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKA  402 (576)
T ss_pred             cCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCcc--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998521  123579999999998888999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccccCChHHHHHHHHHHHHHHHHHhCCChhhh
Q 007251          472 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIEEL  551 (611)
Q Consensus       472 ~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~gnt~~ylqYa~aRi~SIlrKa~~~~~~~  551 (611)
                      .+.++++.+++++++.+++|+.+|++|+||++|++++.++++||||++++++|||+|||||||||+||||||++......
T Consensus       403 ~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~  482 (576)
T PLN02286        403 ALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDEL  482 (576)
T ss_pred             HHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccc
Confidence            99998777789999999999999999999999999999999999999999999999999999999999999996432111


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhcccCC
Q 007251          552 KKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYFTRFYSNCQVQ  611 (611)
Q Consensus       552 ~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~fn~fY~~~~Vl  611 (611)
                      .......+.++.|++|+++|++||++|.+|+++++||.||+||++||+.||+||++||||
T Consensus       483 ~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl  542 (576)
T PLN02286        483 KKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVN  542 (576)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence            111123467899999999999999999999999999999999999999999999999996

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>smart00836 DALR_1 DALR anticodon binding domain Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query611
1bs2_A607 Yeast Arginyl-Trna Synthetase Length = 607 3e-46
1iq0_A592 Thermus Thermophilus Arginyl-Trna Synthetase Length 3e-25
2zue_A629 Crystal Structure Of Pyrococcus Horikoshii Arginyl- 7e-23
3gdz_A109 Crystal Structure Of Arginyl-Trna Synthetase From K 4e-05
3fnr_A464 Crystal Structure Of Putative Arginyl T-Rna Synthet 6e-05
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase Length = 607 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 150/500 (30%), Positives = 236/500 (47%), Gaps = 30/500 (6%)
Query: 123 KGPQPVGQAIM--KNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPK 180
           KG  P   A+   +  P  + +E     GP F+    +  ++AK +   ++   E +   
Sbjct: 79  KGANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSC 137
Query: 181 LRV--KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 238
             V  KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG
Sbjct: 138 KLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFG 197
Query: 239 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF----DSDP---AFKERAQQAVVRLQ 291
           +L    FE++ N E   +  I  L + Y R         DS P   +   +A++   R++
Sbjct: 198 LL-AVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME 256
Query: 292 SGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYNPYIPGVIDELSKQGLVE 349
            G+ +  + W +  E S +++   Y RL +  +   GES      +   ID   ++GL  
Sbjct: 257 DGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTH 316
Query: 350 ESQGARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ 406
           E +GA +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q 
Sbjct: 317 EDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQD 376
Query: 407 LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 466
           LH    F   K+ G+  A D       HV FG+V G     + TR   VV L ++L+E K
Sbjct: 377 LHAAQFFEILKQMGFEWAKD-----LQHVNFGMVQG-----MSTRKGTVVFLDNILEETK 426
Query: 467 NRSKAVLIERGKDKXXXXXXXXXXXXXVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNT 526
            +   V+ ++ ++K             VG  A    D++  R+ NY F +++ML+ +G+T
Sbjct: 427 EKMHEVM-KKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDT 485
Query: 527 AVYLLYAHARICSIIRKSGKDIEELKKTGSLVLDHADERALGLHLL-HFSEVIEEALTNL 585
             YL YAH+R+ S+ R +    +E        L       L + LL  + +V+  A+   
Sbjct: 486 GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTH 545
Query: 586 LPNVVCEYLYNLSEYFTRFY 605
            P  V  YL+ L+   +  Y
Sbjct: 546 EPTTVVTYLFKLTHQVSSCY 565
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase Length = 592 Back     alignment and structure
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna Synthetase Complexed With Trna(Arg) And An Atp Analog (Anp) Length = 629 Back     alignment and structure
>pdb|3GDZ|A Chain A, Crystal Structure Of Arginyl-Trna Synthetase From Klebsiella Pneumoniae Subsp. Pneumoniae Length = 109 Back     alignment and structure
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase From Campylobacter Jejuni Length = 464 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query611
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 0.0
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 0.0
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 1e-180
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 6e-32
3gdz_A109 Arginyl-tRNA synthetase; klebsiella pneumoniae sub 8e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 Back     alignment and structure
 Score =  651 bits (1681), Expect = 0.0
 Identities = 153/562 (27%), Positives = 252/562 (44%), Gaps = 38/562 (6%)

Query: 66  NVKRELEKVFDLALKATVPNETD-VRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFK 123
           N+   +       L      ++  + P +      + GD           +IKG      
Sbjct: 30  NIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR---LRIKGAN---- 82

Query: 124 GPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIET--WAPKL 181
            P+ +     +  P  + +E     GP F+    +  ++AK +   ++   E       +
Sbjct: 83  -PKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLV 140

Query: 182 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLI 241
             KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG+L 
Sbjct: 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLA 200

Query: 242 EYLFEKFPNSEDANETAIGELQEFYRRSKNRFD-------SDPAFKERAQQAVVRLQSGE 294
              FE++ N E   +  I  L + Y R     +        + +   +A++   R++ G+
Sbjct: 201 VG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGD 259

Query: 295 PKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGES-FYNPYIPGVIDELSKQGLVEESQ 352
            +  + W +  E S +++   Y RL +      GES      +   ID   ++GL  E +
Sbjct: 260 EEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDK 319

Query: 353 GARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 409
           GA +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q LH 
Sbjct: 320 GAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHA 379

Query: 410 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 469
              F   K+ G+  A         HV FG+V G     + TR   VV L ++L+E K + 
Sbjct: 380 AQFFEILKQMGFEWAK-----DLQHVNFGMVQG-----MSTRKGTVVFLDNILEETKEKM 429

Query: 470 KAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKGNTAVY 529
             V +++ ++K    E  E+ A+ VG  A    D++  R+ NY F +++ML+ +G+T  Y
Sbjct: 430 HEV-MKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPY 488

Query: 530 LLYAHARICSIIRKSGKDIEELKKTGSL-VLDHADERALGLHLLHFSEVIEEALTNLLPN 588
           L YAH+R+ S+ R +    +E        +L     + L   L  + +V+  A+    P 
Sbjct: 489 LQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPT 548

Query: 589 VVCEYLYNLSEYFTRFYSNCQV 610
            V  YL+ L+   +  Y    V
Sbjct: 549 TVVTYLFKLTHQVSSCYDVLWV 570
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Length = 629 Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464 Back     alignment and structure
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query611
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 100.0
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 100.0
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 100.0
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 100.0
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 100.0
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 100.0
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 100.0
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 99.97
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 99.97
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 99.95
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 99.93
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 99.92
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.92
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 99.91
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 99.91
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 99.9
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 99.9
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 99.88
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 99.86
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 99.84
3gdz_A109 Arginyl-tRNA synthetase; klebsiella pneumoniae sub 99.84
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.81
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 99.77
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 99.74
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.73
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 99.72
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 99.71
4gri_A512 Glutamate--tRNA ligase; structural genomics, seatt 99.62
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 99.55
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 99.44
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 99.39
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 98.25
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 97.94
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 97.93
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 97.36
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 96.82
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 96.45
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 95.17
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 95.17
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 94.8
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 94.45
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 94.18
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 94.05
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 93.93
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 93.74
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 93.71
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 93.63
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 93.56
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 93.33
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 92.92
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 92.7
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 92.33
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 91.58
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 91.3
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 91.29
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 91.08
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 91.07
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 90.97
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 90.89
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 90.49
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 90.37
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 87.59
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 87.37
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 82.47
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 80.88
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-112  Score=960.81  Aligned_cols=530  Identities=28%  Similarity=0.430  Sum_probs=452.7

Q ss_pred             cchhhhHHhHHHHHHHHHHHHHHhcCCCCCCCccccccc-CCCCcccccchhHHHHHHhcCCCCCCCChHHHHHHHHHhC
Q 007251           58 ATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNL  136 (611)
Q Consensus        58 ~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~v~~~-~~~~GD~~~n~A~~lak~~k~~~~~~~~P~~iA~~l~~~l  136 (611)
                      .+..++...+++.+.+.+.+++.  .+ .....+.+++| +++||||+||+||.  |.+|      +||++||++|+++|
T Consensus        26 ~~~~~~~~~~~~~i~~~l~~~~~--~~-~~~~~~~v~~~~~~~~GD~a~~~~~~--k~~~------~~P~~iA~~i~~~l   94 (607)
T 1f7u_A           26 HPDVNIVDLMRNYISQELSKISG--VD-SSLIFPALEWTNTMERGDLLIPIPRL--RIKG------ANPKDLAVQWAEKF   94 (607)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHC--CC-HHHHGGGCEECSSGGGCSEEEEGGGG--CCTT------CCHHHHHHHHHHTC
T ss_pred             CccccHHHHHHHHHHHHHHHHhC--CC-ccccccceeCCCCCCCCchhhHHHHH--HhcC------CCHHHHHHHHHHhc
Confidence            34444454444555544444432  11 01123356666 78999999998763  7777      99999999999999


Q ss_pred             CCCCCcceeEEecCceeEeecCHHHHHHH-HHHHHHcCCC-CCCccCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHH
Q 007251          137 PPSEMIESCSVAGPGFVNVVLSKNWMAKN-IQKMLVDGIE-TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLA  214 (611)
Q Consensus       137 ~~~~~i~~vevagpGfIN~~l~~~~~~~~-~~~~l~~~~~-~~~~~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLa  214 (611)
                      +.++.|++++++|| ||||+|+++++.+. +..++..++. |..+.+.+++|+||||||||||||||||+||+||||+|+
T Consensus        95 ~~~~~i~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~la  173 (607)
T 1f7u_A           95 PCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLA  173 (607)
T ss_dssp             CCTTTEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHH
T ss_pred             cccCceeEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHH
Confidence            87778999999996 99999999999975 4556666655 333446789999999999999999999999999999999


Q ss_pred             HHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchHHHHHHHHHHHhcccCCC-------hHHHHHHHHHH
Q 007251          215 RMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAV  287 (611)
Q Consensus       215 riL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~d-------~~~~~~a~~~~  287 (611)
                      |+|+++||+|+++|||||||+||++|+.+ +.++++.+....+++.++.++|+++++.++++       +.+.++|++.+
T Consensus       174 Ril~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~  252 (607)
T 1f7u_A          174 NLYEKLGWEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYF  252 (607)
T ss_dssp             HHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHH
T ss_pred             HHHHHcCCCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence            99999999999999999999999999987 45566533333457889999999999998888       88999999999


Q ss_pred             HHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCee-eeccccccc-CcHHHHHHHHHhCCCceeecccEEEecc--CCC
Q 007251          288 VRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGESFYN-PYIPGVIDELSKQGLVEESQGARVIFIE--GVN  363 (611)
Q Consensus       288 ~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f-~~~~Es~y~-~~v~~vi~~L~~~G~~~e~dGa~~~~~~--g~~  363 (611)
                      ++||+||+++.++|++++++++++|+++|++|||+| .|.+||.|. +.++++++.|+++|++|+++|++||+++  |++
T Consensus       253 ~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~  332 (607)
T 1f7u_A          253 KRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKK  332 (607)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTT
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCC
Confidence            999999999999999999999999999999999999 567899887 7899999999999999999999999998  445


Q ss_pred             CC-eEEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEc
Q 007251          364 IP-LIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLG  442 (611)
Q Consensus       364 ~d-~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~  442 (611)
                      .| +|++||||+++|+|+|||||+||+..+++|++|||||++|++||+|++++++++|+.     ++..|.|++||+|. 
T Consensus       333 ~d~~v~~KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~-----~~~~~~Hv~fg~v~-  406 (607)
T 1f7u_A          333 LGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-  406 (607)
T ss_dssp             TCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-
T ss_pred             CCceeEeccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCC-----cCcEEEEecccccc-
Confidence            55 899999999999999999999999778999999999999999999999999999993     45679999999986 


Q ss_pred             CCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCcchhhhhhccCCCCCcccccccccccc
Q 007251          443 EDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLND  522 (611)
Q Consensus       443 ~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~  522 (611)
                          |||||+||+|+|+||++++..+|...+.+ ++..-...+|.+++|++||++|+||++|+.++.++++||||+++++
T Consensus       407 ----kMSkR~G~~v~L~dLlde~~~~a~~~~~~-~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~  481 (607)
T 1f7u_A          407 ----GMSTRKGTVVFLDNILEETKEKMHEVMKK-NENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSF  481 (607)
T ss_dssp             ----SCCGGGTCCCBHHHHHHHHHHHHHHHHHT-CHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCC
T ss_pred             ----cccCCCCCcccHHHHHHHHHHHHHHHHHh-CcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHH
Confidence                49999999999999999999988766552 1110011357889999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHh-CCChhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 007251          523 KGNTAVYLLYAHARICSIIRKS-GKDIEELKKTGSLVLDHADERALGLHLLHFSEVIEEALTNLLPNVVCEYLYNLSEYF  601 (611)
Q Consensus       523 ~gnt~~ylqYa~aRi~SIlrKa-~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~P~~l~~yL~~La~~f  601 (611)
                      +|||||||||||||+|||+||+ +.....+...+...+.++.|++|++.|.+||++|++|+++++||++|+||++||+.|
T Consensus       482 ~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~f  561 (607)
T 1f7u_A          482 EGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQV  561 (607)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 433221111122336689999999999999999999999999999999999999999


Q ss_pred             hchhhcccCC
Q 007251          602 TRFYSNCQVQ  611 (611)
Q Consensus       602 n~fY~~~~Vl  611 (611)
                      |+||++||||
T Consensus       562 n~fY~~~~Vl  571 (607)
T 1f7u_A          562 SSCYDVLWVA  571 (607)
T ss_dssp             HHHHHHCCST
T ss_pred             HHHHHhCCCC
Confidence            9999999997
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 611
d1f7ua2348 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR 1e-78
d1iq0a2370 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS 1e-65
d1f7ua1124 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgR 1e-16
d1iq0a1126 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgR 6e-16
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 1e-08
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 1e-08
d1iq0a396 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), 6e-08
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 3e-05
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 2e-04
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 5e-04
d1ilea3452 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe 0.003
d1ffya3450 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe 0.004
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  250 bits (640), Expect = 1e-78
 Identities = 111/353 (31%), Positives = 176/353 (49%), Gaps = 24/353 (6%)

Query: 184 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 243
           KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG+L   
Sbjct: 8   KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG 67

Query: 244 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPK 296
            FE++ N E   +  I  L + Y R     + +        +   +A++   R++ G+ +
Sbjct: 68  -FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEE 126

Query: 297 YHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPY--IPGVIDELSKQGLVEESQGA 354
             + W +  E S +++   Y RL +  +            +   ID   ++GL  E +GA
Sbjct: 127 ALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGA 186

Query: 355 RVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDM 411
            +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q LH   
Sbjct: 187 VLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQ 246

Query: 412 VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 471
            F   K+ G+  A D       HV FG+V     + + TR   VV L ++L+E K +   
Sbjct: 247 FFEILKQMGFEWAKDLQ-----HVNFGMV-----QGMSTRKGTVVFLDNILEETKEKMHE 296

Query: 472 VLIERGKDKEWTEEELEQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG 524
           V +++ ++K    E  E+ A+ VG  A    D++  R+ NY F +++ML+ +G
Sbjct: 297 V-MKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG 348
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370 Back     information, alignment and structure
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 Back     information, alignment and structure
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 126 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query611
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 100.0
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 100.0
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.97
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.96
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.93
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.92
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.92
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.89
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.87
d1f7ua1124 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 99.86
d1iq0a1126 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 99.83
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.82
d1iq0a396 Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit 99.72
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.68
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 99.66
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 99.51
d1f7ua3134 Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit 99.5
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 99.14
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 97.75
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 97.46
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 96.55
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 96.12
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 96.08
d1rqga1 210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 96.05
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 94.46
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 91.73
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-76  Score=626.53  Aligned_cols=333  Identities=32%  Similarity=0.502  Sum_probs=290.5

Q ss_pred             cCCCceEEEEecCCCCCCCCcchhhhHHHHHHHHHHHHHHCCCeEEEEeccCCchhHHHHHHHHHHhhCCCCCccccchH
Q 007251          180 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI  259 (611)
Q Consensus       180 ~~~~~kV~Ve~~SpNp~kplHvGHlRsaiiGDsLariL~~~Gy~V~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~i  259 (611)
                      .++++||+||||||||||||||||+|||||||+|||||+++||+|+|+|||||||+||++|+.++.. +++.......++
T Consensus         4 ~~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~-~~~~~~~~~~~~   82 (348)
T d1f7ua2           4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFER-YGNEEALVKDPI   82 (348)
T ss_dssp             CSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHH-HCCHHHHHHCHH
T ss_pred             CCCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHH-hccccccccccc
Confidence            4678999999999999999999999999999999999999999999999999999999999988643 333222233455


Q ss_pred             HHHHHHHHHHhcccCC-------ChHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHhcCCeee-ecccc-c
Q 007251          260 GELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-F  330 (611)
Q Consensus       260 ~~l~~~y~~~~~~~~~-------d~~~~~~a~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~LgV~f~-~~~Es-~  330 (611)
                      .++.++|.+..+.++.       ++.+.+++++.+.++++||+++.++|+.+++.++++|+++|++|||+|| |++|| +
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~~  162 (348)
T d1f7ua2          83 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQV  162 (348)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGC
T ss_pred             hhHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Confidence            6666666665544322       2457788999999999999999999999999999999999999999995 77775 5


Q ss_pred             ccCcHHHHHHHHHhCCCceeecccEEEecc--CCCCCe-EEEccCCcccccCcchhHHHhhhhccCCCeEEEEEeCCccc
Q 007251          331 YNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPL-IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQL  407 (611)
Q Consensus       331 y~~~v~~vi~~L~~~G~~~e~dGa~~~~~~--g~~~d~-Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~iIyV~g~dq~~  407 (611)
                      +.+...++++.|+++|++++++||+|++++  |++.|+ +++||||++||+|+|||||+||+..+++|++|||||++|++
T Consensus       163 ~~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~~g~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~D~~I~V~g~dq~~  242 (348)
T d1f7ua2         163 SKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDL  242 (348)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHH
T ss_pred             cccchHHHHHHHHhhccccccCCcccccchhhccccccceeccCCCccceecchHHhhhhhhhccCCCEEEEecccccch
Confidence            566677899999999999999999999987  666655 66899999999999999999999777999999999999999


Q ss_pred             cHHHHHHHHHHcCCCCCCCCCCCcEEEEeeeeEEcCCCceeeeccCCcccHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 007251          408 HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGKDKEWTEEEL  487 (611)
Q Consensus       408 hf~~l~~~~~~lG~~~~~~~~~~~~~Hv~~g~V~~~dG~kmSkR~G~~v~l~dLldea~~~a~~~~~~r~~~~~~~~~e~  487 (611)
                      ||+|++++++++|+.     ++..+.|+.||+|.     |||||+||+|+|+|||+|++++|.+.+.++. ....+.++.
T Consensus       243 ~~~~l~~~l~~lg~~-----~~~~~~h~~~g~v~-----kMStR~G~~i~l~dll~e~~~~a~~~~~~~~-~~~~~~~~~  311 (348)
T d1f7ua2         243 HAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNE-NKYAQIEHP  311 (348)
T ss_dssp             HHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCH-HHHTTCSCH
T ss_pred             hhhhHHHHHHHhCCC-----cccceeeecCCccc-----cccccCCCceEHHHHHHHHHHHHHHHHHhcc-CcCCChhhH
Confidence            999999999999984     35679999999985     6999999999999999999999999887652 123345678


Q ss_pred             HHHHhhcCcchhhhhhccCCCCCcccccccccccccC
Q 007251          488 EQTAEAVGYGAAKYFDLKNNRLTNYTFSFDQMLNDKG  524 (611)
Q Consensus       488 ~~~a~~vg~~avRy~~L~~~~~~~~~Fd~d~~~~~~g  524 (611)
                      +++|+++|++|+||++|+++|.++++||||++++++|
T Consensus       312 ~~ia~~vgv~ai~y~~L~~~~~~~~~Fd~d~~l~~eG  348 (348)
T d1f7ua2         312 EEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEG  348 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSS
T ss_pred             HHHHHHhhHHheehhhhhcCCCCCCEECHHHhcCCCC
Confidence            8999999999999999999999999999999999986
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure