Citrus Sinensis ID: 007252

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-

MPGSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD

ccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHccccccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHHccccccEEEccccccccHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEcccccccccccccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHccccccEEEcccccccccccccccEEEccccccccc

ccccccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHccccccEEcccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHHcccccEEEcccccccccccccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccHcccHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHccccccEEEEc

mpgssaldvLTEDLLVRVREKIGDELDSKTWRLVCKEfsrvdsvtrttLRVLRVEFLFILLdkypyiktldlsvcprvndgtVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARAcpllesvdlsyccgfgdREAAALSFASGlkevkldkclnvtdVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYlkltndsfcSIATLAKLESLVmvgcpcvddtglrflesgcpLLKTIFVSRCKFVSSTGLISVIRghsgllqldaghcFSELSTTLLHHMRDLKNLeaitmdgarisdscfQTISFNCKSLVEIGLskclgvtntdscrgLVCLKIESCNMITEKGLYQLGSFCLrleeidltdcngvndkgLEYLSRCSELLFLKLGLcenisdkglfyIASNClriqgldlykcsgigddGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLkhcakiddSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAagckirwd

mpgssaldvlteDLLVRVREkigdeldsktwrlvckefsrvdsvtrttlrvLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILetlhaagckirwd

MPGSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIdllckkcldlksldVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD

*******DVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRW*

****SAL*VLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD

**GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		611	2.2.26 [Sep-21-2011]
Q8RWU5		665	F-box/LRR-repeat protein	no	no	0.978	0.899	0.368	1e-89
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.718	0.719	0.297	5e-35
Q96IG2		436	F-box/LRR-repeat protein	yes	no	0.495	0.694	0.288	1e-27
Q58DG6		436	F-box/LRR-repeat protein	yes	no	0.495	0.694	0.288	1e-27
Q9CZV8		436	F-box/LRR-repeat protein	yes	no	0.482	0.676	0.291	1e-27
Q8BH16		423	F-box/LRR-repeat protein	no	no	0.410	0.593	0.325	2e-25
Q708Y0		623	EIN3-binding F-box protei	no	no	0.605	0.593	0.263	1e-24
Q9UKC9		423	F-box/LRR-repeat protein	no	no	0.410	0.593	0.318	2e-24
Q9SKK0		628	EIN3-binding F-box protei	no	no	0.646	0.628	0.261	2e-24
A6H779		423	F-box/LRR-repeat protein	no	no	0.410	0.593	0.321	3e-24

>sp\|Q8RWU5\|FBL3_ARATH F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1	Back alignment and function desciption

 Score =  331 bits (848), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 356/638 (55%), Gaps = 40/638 (6%)

Query: 6   ALDVLTEDLLVRVREKIG-DELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKY 64
             D+L+E+L+  + + I  +  D K++ L CK F +++S  R +L+ LR ++L  +L +Y
Sbjct: 12  PFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLRSDYLPRILTRY 71

Query: 65  PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLL 124
                LDL+ CPRV D    + LS +      +L+SL LSRS      GL  LA  C  L
Sbjct: 72  RNTTDLDLTFCPRVTD----YALSVVGCLSGPTLRSLDLSRSGSFSAAGLLRLALKCVNL 127

Query: 125 ESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCM 184
             +DLS      D +AA ++ A  L+ +KL +C  +TD+G+  IAV C  L  +SLKWC+
Sbjct: 128 VEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTVSLKWCV 187

Query: 185 EISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFL 244
            + DLG+ LL  KC D+++LD+SYL +T      I  L  LE L++ GC  VDD  L+ L
Sbjct: 188 GVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDDDSLKSL 247

Query: 245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304
              C  LK +  S C+ ++  GL S++ G   L +LD  HC S +S      ++ +  L+
Sbjct: 248 RHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLKKVSALQ 307

Query: 305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN----------------------- 341
           +I +DG  ++    + I   C SL E+ LSKC+ VT+                       
Sbjct: 308 SIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDITCCRK 367

Query: 342 ---------TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEY 392
                     +SC  LV LK+ESC++++ +  + +G  C  LEE+DLTD N ++D+GL+ 
Sbjct: 368 LSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTD-NEIDDEGLKS 426

Query: 393 LSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 452
           +S C  L  LKLG+C NI+DKGL YI   C  ++ LDLY+  GI D G++ ++ GC  L+
Sbjct: 427 ISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLE 486

Query: 453 KLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAK 512
            +N+SYC ++TD+ +  +     L   E RG   ITS GL A+A  CKRLA +DLK C  
Sbjct: 487 TINISYCQDITDKSLVSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDLKKCPS 546

Query: 513 IDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELA 572
           I+D+G  ALA++SQNL+QIN+S  A++++ L + + N+  LQ+  +V+ +     G   A
Sbjct: 547 INDAGLLALAHFSQNLKQINVSDTAVTEVGL-LSLANIGCLQNIAVVNSSGLRPSGVAAA 605

Query: 573 LRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRW 610
           L   C  ++K KL A +R LL   ++  L A GC   W
Sbjct: 606 LLG-CGGLRKAKLHASLRSLLPLSLIHHLEARGCAFLW 642

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

>sp\|Q58DG6\|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|Q708Y0\|EBF2_ARATH EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|Q9SKK0\|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1	Back alignment and function description

>sp\|A6H779\|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		611
224123030		646	predicted protein [Populus trichocarpa]	0.995	0.941	0.656	0.0
224123854		646	predicted protein [Populus trichocarpa]	0.995	0.941	0.653	0.0
356505803		641	PREDICTED: F-box/LRR-repeat protein 3-li	0.996	0.950	0.643	0.0
356572954		641	PREDICTED: F-box/LRR-repeat protein 3-li	0.996	0.950	0.634	0.0
255542802		644	ubiquitin-protein ligase, putative [Rici	1.0	0.948	0.663	0.0
296089716		643	unnamed protein product [Vitis vinifera]	1.0	0.950	0.643	0.0
357511813		679	F-box/LRR-repeat protein [Medicago trunc	0.981	0.883	0.616	0.0
449435625		640	PREDICTED: F-box/LRR-repeat protein 3-li	0.993	0.948	0.579	0.0
449485666		640	PREDICTED: F-box/LRR-repeat protein 3-li	0.993	0.948	0.577	0.0
297808737		642	F-box family protein [Arabidopsis lyrata	0.991	0.943	0.595	0.0

>gi\|224123030\|ref\|XP_002318976.1\| predicted protein [Populus trichocarpa] gi\|222857352\|gb\|EEE94899.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/641 (65%), Positives = 494/641 (77%), Gaps = 33/641 (5%)

Query: 4   SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDK 63
           +  L VLTEDLL+RV EK+  + D K WRL+CKEF RVDS+TR TLRVL VEFL  LL  
Sbjct: 6   TPILSVLTEDLLIRVNEKLVQDSDRKIWRLICKEFHRVDSITRKTLRVLHVEFLPTLLKN 65

Query: 64  YPYIKTLDLSVCPRVNDGTVSFLLSQLSLS-WTRSLKSLILSRSTGLRYRGLEMLARACP 122
           Y  + TLDLSVCP + DGT++ LL ++  S W R+LK L L R+ GL++ GLEML  AC 
Sbjct: 66  YTNLLTLDLSVCPCIEDGTITLLLHRVDHSMWARNLKFLNLRRANGLKFAGLEMLVGACK 125

Query: 123 LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKW 182
            LESVD+SYC GFGDREAAA+S   GLKE+ +DKCL V+DVGLAKI V C  L RLSLKW
Sbjct: 126 GLESVDVSYCRGFGDREAAAISGCGGLKELSMDKCLGVSDVGLAKIVVGCGRLVRLSLKW 185

Query: 183 CMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLR 242
           CMEISDLG++LLCKKCL+LK LDVSYLK+T+DS  SIA L KLE L MVGCP V+D GL+
Sbjct: 186 CMEISDLGVELLCKKCLELKFLDVSYLKVTSDSLRSIAALPKLEDLAMVGCPLVNDVGLQ 245

Query: 243 FLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302
           FLE+GCPLL+ I VSRC  VSS GL ++IRGH+GLLQ+DAG+  SE S   +  M++LKN
Sbjct: 246 FLENGCPLLQKIDVSRCDCVSSYGLSALIRGHNGLLQIDAGYTISEFSANFVECMQELKN 305

Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTN--------------------- 341
           L AI +DGAR+SD+ FQTIS NC+SL+EIGLSKC GVTN                     
Sbjct: 306 LNAIIIDGARVSDTVFQTISNNCRSLIEIGLSKCTGVTNMRIMQLVSGCVNLKTINLTCC 365

Query: 342 -----------TDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGL 390
                       DSCR L+CLK+ESCNMITEK L QLGS C  LE++DLTDC G+ND+GL
Sbjct: 366 RSITDAAISAIADSCRNLLCLKLESCNMITEKSLEQLGSHCALLEDLDLTDCFGINDRGL 425

Query: 391 EYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 450
           E LSRCS LL LKLGLC NISD GLFYIASNC ++  LDLY+C GIGDDGLAALS+GCKK
Sbjct: 426 ERLSRCSRLLCLKLGLCTNISDTGLFYIASNCSQLHELDLYRCMGIGDDGLAALSSGCKK 485

Query: 451 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHC 510
           L+KLNLSYC+ VTD+GME + ++E LSDLELR L KIT  GLTAL   CKRL  LDLKHC
Sbjct: 486 LRKLNLSYCIEVTDKGMESLGYLEVLSDLELRALDKITGVGLTALVTRCKRLTYLDLKHC 545

Query: 511 AKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFE 570
            K+DD+GFWALAYYS+NLRQINLSYC+++DMALCMVMGN+TRLQDA LVHL N T EGF+
Sbjct: 546 KKVDDTGFWALAYYSRNLRQINLSYCSITDMALCMVMGNLTRLQDADLVHLRNVTVEGFD 605

Query: 571 LALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD 611
           LALR+CC+RIKKVKL+A + FLLSSE+L  LHA GC+IRWD
Sbjct: 606 LALRACCVRIKKVKLVAALGFLLSSEVLGILHARGCRIRWD 646

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224123854\|ref\|XP_002330225.1\| predicted protein [Populus trichocarpa] gi\|222871681\|gb\|EEF08812.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356505803\|ref\|XP_003521679.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356572954\|ref\|XP_003554630.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|255542802\|ref\|XP_002512464.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223548425\|gb\|EEF49916.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|296089716\|emb\|CBI39535.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357511813\|ref\|XP_003626195.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355501210\|gb\|AES82413.1\| F-box/LRR-repeat protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449435625\|ref\|XP_004135595.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449485666\|ref\|XP_004157239.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297808737\|ref\|XP_002872252.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi\|297318089\|gb\|EFH48511.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		611
TAIR\|locus:2143320		642	AT5G27920 "AT5G27920" [Arabido	0.941	0.895	0.432	1.9e-113
TAIR\|locus:2149805		665	AT5G01720 "AT5G01720" [Arabido	0.926	0.851	0.308	7.6e-64
TAIR\|locus:505006471		610	AT4G15475 "AT4G15475" [Arabido	0.759	0.760	0.287	1.1e-37
UNIPROTKB\|F1PWK1		422	FBXL2 "Uncharacterized protein	0.468	0.677	0.306	1e-31
RGD\|1562243		422	Fbxl2 "F-box and leucine-rich	0.468	0.677	0.313	1.7e-31
MGI\|MGI:1919429		423	Fbxl2 "F-box and leucine-rich	0.468	0.676	0.313	2.2e-31
UNIPROTKB\|Q9UKC9		423	FBXL2 "F-box/LRR-repeat protei	0.468	0.676	0.303	4.7e-31
UNIPROTKB\|Q5R3Z8		423	FBXL2 "F-box/LRR-repeat protei	0.468	0.676	0.303	4.7e-31
UNIPROTKB\|A6H779		423	FBXL2 "F-box/LRR-repeat protei	0.468	0.676	0.311	1.7e-30
UNIPROTKB\|F1NMM1		345	FBXL14 "Uncharacterized protei	0.486	0.860	0.287	2.8e-30

TAIR\|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 256/592 (43%), Positives = 364/592 (61%)

Query:     5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKY 64
             S L VL+EDLLVRV E + D    KTWRL+ K+F RVDS+TRTT+R+LRVEFL  LL KY
Sbjct:     6 SILSVLSEDLLVRVYECL-DPPCRKTWRLISKDFLRVDSLTRTTIRILRVEFLPTLLFKY 64

Query:    65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLL 124
             P + +LDLSVCP+++D  V  L    ++S T  +KSL LSRST +R RGLE LAR C  L
Sbjct:    65 PNLSSLDLSVCPKLDDDVVLRLALDGAIS-TLGIKSLNLSRSTAVRARGLETLARMCHAL 123

Query:   125 ESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCM 184
             E VD+S+C GFGDREAAALS A+GL+E+K+DKCL+++DVGLA+I V C NL ++SLKWCM
Sbjct:   124 ERVDVSHCWGFGDREAAALSSATGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCM 183

Query:   185 EISDLGIXXXXXXXXXXXXXXVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFL 244
             EISDLGI              VSYLK+TNDS  SIA L KLE L MV CP +DD GL+FL
Sbjct:   184 EISDLGIDLLCKICKGLKSLDVSYLKITNDSIRSIALLVKLEVLDMVSCPLIDDGGLQFL 243

Query:   245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304
             E+G P L+ + V+RC  VS +GLIS++RGH  +  L A HC SE+S + L +++ LK+L+
Sbjct:   244 ENGSPSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLKYIKGLKHLK 303

Query:   305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTD------SCRGLVCLKIESCNM 358
              I +DGA +SDS   ++S +C+SL+EIGLS+C+ VT+        +C  L  L +  C  
Sbjct:   304 TIWIDGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGF 363

Query:   359 ITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGL--CENISDKGLF 416
             +T+  +  +   C  L  + L  C+ + +KGL+ L  C  +L  +L L  C  ++D+GL 
Sbjct:   364 VTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLG-CYSMLVQELDLTDCYGVNDRGLE 422

Query:   417 YIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHI-RFIED 475
             YI S C  +Q L L  C+ I D G+  + + C KL +L+L  C    D G+  + R  + 
Sbjct:   423 YI-SKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKS 481

Query:   476 LSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSY 535
             L+ L L    ++T  G+  +    + L+ L+L+    I   G  A+A   + L  +++  
Sbjct:   482 LNRLILSYCCELTDTGVEQIRQ-LELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKL 540

Query:   536 CALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELA-LRSCCMRIKKVKLL 586
             C   D +    +   ++  + + ++L NC+     L  L S   R++ V L+
Sbjct:   541 CENIDDSGFWALAYFSK--NLRQINLCNCSVSDTALCMLMSNLSRVQDVDLV 590

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR\|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00130121	hypothetical protein (646 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		611
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	3e-17
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	8e-14
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	7e-11
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-10
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	3e-09
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-04
smart00367		26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	0.002

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 9/154 (5%)

Query: 343 DSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSR-CSELLF 401
            +C  L  L +    +I ++GL  L   C  L+ +DL  C  + D G+  L+  C +L  
Sbjct: 49  SNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQT 108

Query: 402 LKLGLCEN---ISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGC-KKLKKLNLS 457
           + LG   N   I+D  L  +  NC  +Q +    C  + D G+  L++GC K L++L+L+
Sbjct: 109 INLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSLN 167

Query: 458 YCVNVTDRGMEHI---RFIEDLSDLELRGLTKIT 488
            C N+TD+ +  I    +  +LS LE RG   IT
Sbjct: 168 NCRNLTDQSIPAILASNYFPNLSVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		611
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4341		483	consensus F-box protein containing LRR [General fu	99.93
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.92
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.82
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.67
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.59
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.58
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.56
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.53
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.53
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.51
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.49
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.43
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.35
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.26
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.98
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.93
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.85
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.82
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.76
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.74
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.68
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.62
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.62
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.58
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.5
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.44
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.42
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.42
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.38
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.37
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.34
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.34
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.25
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.17
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.17
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.16
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	98.12
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	98.05
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.89
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.65
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.61
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.55
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.33
KOG4308		478	consensus LRR-containing protein [Function unknown	97.2
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.15
KOG2123		388	consensus Uncharacterized conserved protein [Funct	97.04
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.98
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.66
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.62
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.54
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.47
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	96.45
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.41
PRK15386		426	type III secretion protein GogB; Provisional	96.4
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.21
PLN03150		623	hypothetical protein; Provisional	96.21
KOG4308		478	consensus LRR-containing protein [Function unknown	96.13
PLN03150		623	hypothetical protein; Provisional	96.05
PRK15386		426	type III secretion protein GogB; Provisional	95.89
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.83
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	95.04
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	94.99
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	94.72
KOG2997		366	consensus F-box protein FBX9 [General function pre	94.62
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	94.38
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	93.92
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.92
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.66
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	93.4
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	93.05
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	91.55
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.39
PF13013		109	F-box-like_2: F-box-like domain	90.08
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.07
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	89.4
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.65
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	82.33
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	81.76
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	81.74
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	80.72

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=6.5e-35  Score=263.19  Aligned_cols=401  Identities=27%  Similarity=0.463  Sum_probs=267.7

Q ss_pred             cCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccccccccchHHHHHHHHhcCCCCcEEeccCCCCCChhhHHHHh
Q 007252            8 DVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLL   87 (611)
Q Consensus         8 ~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~   87 (611)
                      -.||+|++..||++|+ .+.+.+++.||+.|...+.+.                   .+++.+++-....          
T Consensus        73 ~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~-------------------~~~q~idL~t~~r----------  122 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDG-------------------SCWQHIDLFTFQR----------  122 (483)
T ss_pred             ccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhcc-------------------ccceeeehhcchh----------
Confidence            3699999999999999 999999999999999876654                   2222222221100          


Q ss_pred             hhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhhcCCCCcEEeccCCCCCChHHHHH
Q 007252           88 SQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAK  167 (611)
Q Consensus        88 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  167 (611)
                                          ......+..+...|.                        ..||+|++.||..+.+..+..
T Consensus       123 --------------------Dv~g~VV~~~~~Rcg------------------------g~lk~LSlrG~r~v~~sslrt  158 (483)
T KOG4341|consen  123 --------------------DVDGGVVENMISRCG------------------------GFLKELSLRGCRAVGDSSLRT  158 (483)
T ss_pred             --------------------cCCCcceehHhhhhc------------------------cccccccccccccCCcchhhH
Confidence                                111112222222221                        234455555555555555666


Q ss_pred             HHhcCCccceeecccccccChHHHHHHHHcCCcCcEEeccCcccChHHHHHhhhcCCCcEEEecCCCCCChhHHHHHHhc
Q 007252          168 IAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESG  247 (611)
Q Consensus       168 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  247 (611)
                      +...||++++|.+.+|..+++.....+.+.|+.|+.                        |++..|..+++..+.+++++
T Consensus       159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~------------------------l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRH------------------------LNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhh------------------------hhhcccchhHHHHHHHHHHh
Confidence            666677777776666665555555444444443333                        33344455666666666666


Q ss_pred             CCCccEEEeccccccChHHHHHHHhcCCCCceeccCCCCCccchhHHHHhhcCCCccEEEccCcccChHHHHHHHHhCCC
Q 007252          248 CPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKS  327 (611)
Q Consensus       248 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~  327 (611)
                      |++|+++++++|+.+...++..+..++..++++...+|                                          
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC------------------------------------------  252 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC------------------------------------------  252 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc------------------------------------------
Confidence            77777777777666555555554444433333333333                                          


Q ss_pred             CcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEecCCCCCCChhhhhhhccCCCceEEEecCC
Q 007252          328 LVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLC  407 (611)
Q Consensus       328 L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  407 (611)
                                                   .......+..+..+++-+.++++..|+                        
T Consensus       253 -----------------------------~e~~le~l~~~~~~~~~i~~lnl~~c~------------------------  279 (483)
T KOG4341|consen  253 -----------------------------LELELEALLKAAAYCLEILKLNLQHCN------------------------  279 (483)
T ss_pred             -----------------------------ccccHHHHHHHhccChHhhccchhhhc------------------------
Confidence                                         223333333334344444445544443                        


Q ss_pred             CCCChHhHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhcCccCceecccccCCCChHHHHHhh-CCCCCCEEecCCCcc
Q 007252          408 ENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR-FIEDLSDLELRGLTK  486 (611)
Q Consensus       408 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~~~~L~~L~l~~c~~  486 (611)
                       .++|.++..+...+..|+.+..++|..+++..+..+.+++++|+.|.+..|.++++.++..++ +++.|+.+++.+|..
T Consensus       280 -~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  280 -QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             -cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence             445555555555666777777777777777777777777777777777777777777777766 367777777777777


Q ss_pred             ccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHh---hCCCCCEEEeccCC-CChhHHHHHhccccccccceeeccc
Q 007252          487 ITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAY---YSQNLRQINLSYCA-LSDMALCMVMGNMTRLQDAKLVHLT  562 (611)
Q Consensus       487 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~~~-l~~~~~~~~l~~~~~L~~l~l~~~~  562 (611)
                      +++..+.++..+|+.||.+.+++|..+++.++.++..   ....|..+.+++|+ +++..+ +.+..+++|+++++.+|+
T Consensus       359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHhhCcccceeeeechh
Confidence            7777777788889999999999998889888777654   35789999999999 677776 899999999999999999


Q ss_pred             CCCHHHHHHHHhhcCCCccchhhhhhhhhcCChHHHhhcccccce
Q 007252          563 NCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCK  607 (611)
Q Consensus       563 ~~~~~~~~~~~~~~c~~l~~l~l~~~~~~~~p~~~~~~l~~~~c~  607 (611)
                      +++.++++++... |   ..+.+++++.+..||++..+++|+.|+
T Consensus       438 ~vtk~~i~~~~~~-l---p~i~v~a~~a~~t~p~~v~~~~~~v~r  478 (483)
T KOG4341|consen  438 DVTKEAISRFATH-L---PNIKVHAYFAPVTPPGFVKGLHQRVCR  478 (483)
T ss_pred             hhhhhhhHHHHhh-C---ccceehhhccCCCCccccccchhhccc
Confidence            9999999997655 4   456667799999999999999998874

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		611
3ogk_B		592	Structure Of Coi1-Ask1 In Complex With Coronatine A		1e-08
1fs2_A		272	Insights Into Scf Ubiquitin Ligases From The Struct		1e-06
1fqv_A		336	Insights Into Scf Ubiquitin Ligases From The Struct		2e-06

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Back alignment and structure

Iteration: 1

Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 151/351 (43%), Gaps = 68/351 (19%) Query: 251 LKTIFVSRCKFVSSTGLISVI---RGHSGLLQLDAGHCFSELSTTLLH----HMRDLKNL 303 L+T+ + +C ++ GL+S++ R LL ++ FSE LH H L+ L Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVL 197 Query: 304 EAITMDGARISDSCFQTISFNCKSLVE-----------IGLSK--------CLGVTNTDS 344 + A+IS +TI+ NC+SLV +G K C G N D Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED- 256 Query: 345 CRGLVCLKIESCNMITEKGLYQLG-------------SFCLRLEEIDLTDCNGVNDKGLE 391 + + + N++ + L +LG F ++ ++DL + Sbjct: 257 ----IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 Query: 392 YLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCS---GIGDD-------GL 441 + +C L L+ I D+GL +A C +++ L + + + G+ D+ GL Sbjct: 313 LIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 Query: 442 AALSNGCKKLKKLNLSYCVNVTDRGMEHI-RFIEDLSDLELRGL---TKIT----SAGLT 493 AL+ GC++L+ + + Y ++T+ +E I ++++L D L L +IT G+ Sbjct: 371 IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 Query: 494 ALAAGCKRLADLDLK-HCAKIDDSGFWALAYYSQNLRQINLSYCALSDMAL 543 +L GCK+L + D G + YS N+R + L Y SD L Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480

PyMOL of 3ogk

>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272

Back alignment and structure

>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		611
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-73
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-20
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-61
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-32
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-27
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-35
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-29
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	6e-27
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-25
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-20
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-19
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-13
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-11
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-06
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-11
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-10
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	1e-10
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	3e-09
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	6e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-05
1o6v_A		466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A		466	Internalin A; bacterial infection, extracellular r	7e-04
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	9e-07
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	5e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	3e-06
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	7e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	9e-05

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  245 bits (627), Expect = 2e-73
 Identities = 114/577 (19%), Positives = 209/577 (36%), Gaps = 85/577 (14%)

Query: 10  LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFI--LLDKYPYI 67
             E++L  V   I  + D  +  LVCK +  ++   R  + +     +    ++ ++P +
Sbjct: 9   FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68

Query: 68  KTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESV 127
           ++++L   P   D                   +L+     G  Y  +E ++ +   LE +
Sbjct: 69  RSVELKGKPHFAD------------------FNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110

Query: 128 DLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEIS 187
            L                              VTD  L  IA    N + L L  C   S
Sbjct: 111 RLKRMV--------------------------VTDDCLELIAKSFKNFKVLVLSSCEGFS 144

Query: 188 DLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK----LESLVMVGCPC-VDDTGLR 242
             G+  +   C +LK LD+    + + S   ++        L SL +      V  + L 
Sbjct: 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204

Query: 243 FLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHM----R 298
            L + CP LK++ ++R   V    L ++++    L +L  G   +E+   +   +     
Sbjct: 205 RLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

Query: 299 DLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNT-----DSCRGLVCLKI 353
             K L  ++        +    +   C  L  + LS     +         C  L  L +
Sbjct: 263 GCKELRCLSGFW-DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

Query: 354 ESCNMITEKGLYQLGSFCLRLEEIDLTD--------CNGVNDKGLEYLSRCSELLFLKLG 405
              + I + GL  L S C  L E+ +             + ++GL  +S     L   L 
Sbjct: 322 --LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379

Query: 406 LCENISDKGLFYIASNCLRIQGLDL---------YKCSGIGDDGLAALSNGCKKLKKLNL 456
            C  +++  L  IA N   +    L         Y      D G  A+   CK L++L+L
Sbjct: 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439

Query: 457 SYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDS 516
           S  +  TD+  E+I       ++        +  G+  + +GC  L  L+++ C   D  
Sbjct: 440 SGLL--TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK- 496

Query: 517 GFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRL 553
              A A   + +R + +S C++S  A  ++   M +L
Sbjct: 497 ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533

PyMOL of 2p1m

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		611
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.96
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.95
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.94
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.94
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.88
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.88
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.87
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.87
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.86
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.85
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.84
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.84
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.8
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.8
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.76
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.74
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.73
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.73
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.68
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.65
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.65
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.63
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.62
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.58
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.56
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.55
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.54
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.51
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.5
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.5
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.5
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.49
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.49
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.49
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.48
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.47
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.47
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.44
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.44
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.43
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.43
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.41
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.41
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.4
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.4
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.39
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.37
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.35
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.31
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.31
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.27
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.27
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.25
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.24
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.22
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.22
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.21
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.17
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.17
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.16
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.12
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.11
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.1
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.08
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.07
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.01
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.01
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.97
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.95
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.9
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.9
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.88
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.86
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.85
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.78
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.77
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.75
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.72
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.7
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.69
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.69
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.65
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.6
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.57
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.57
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.56
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.55
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.55
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.53
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.52
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.51
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.49
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.48
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.47
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.31
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.28
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.25
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.15
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.13
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.13
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.09
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	98.09
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.0
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.99
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.97
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.95
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.94
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.93
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.76
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.75
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.72
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.64
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.64
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.42
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.39
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.39
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.15
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.0
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.98
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	96.92
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.88
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	96.87
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.74
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.71
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.69
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.53

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=2.1e-42  Score=364.60  Aligned_cols=498  Identities=22%  Similarity=0.315  Sum_probs=281.0

Q ss_pred             CCCcccCCcHHHHHHHHhhhCCCCCchhhHhhchhHHhhhcccccccccch--HHHHHHHHhcCCCCcEEeccCCCCCCh
Q 007252            3 GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLR--VEFLFILLDKYPYIKTLDLSVCPRVND   80 (611)
Q Consensus         3 ~~~~~~~LP~e~l~~If~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~l~~~~~~~~   80 (611)
                      +.|.|+.||+|++.+||+||+..+|+.++++|||+|+++....+..+....  ...+..++.+++++++|+++++..+.+
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            357899999999999999999788999999999999998433333332221  122456677888888888888765433


Q ss_pred             hhHHHHhhhhhhhhccCCceEEeccccCCChHHHHHHHHhCCCccEEeccCCCCCChhhhHHhh-cCCCCcEEeccCCCC
Q 007252           81 GTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALS-FASGLKEVKLDKCLN  159 (611)
Q Consensus        81 ~~~~~l~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~  159 (611)
                      ..+  .    +..|            .......+..+...+++|++|+++++. +.+..+..+. .+++|++|++.+|..
T Consensus        82 ~~l--~----~~~~------------~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           82 FNL--V----PDGW------------GGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             GTC--S----CTTS------------CCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             ccc--c----cccc------------cchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            321  0    0011            022334566666778888888887664 5565555554 467777777777656


Q ss_pred             CChHHHHHHHhcCCccceeecccccccChHH---HHHHHHcCCcCcEEeccCcc--cChHHHHHh-hhcCCCcEEEecCC
Q 007252          160 VTDVGLAKIAVRCVNLERLSLKWCMEISDLG---IDLLCKKCLDLKSLDVSYLK--LTNDSFCSI-ATLAKLESLVMVGC  233 (611)
Q Consensus       160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~--~~~~~~~~l-~~~~~L~~L~l~~~  233 (611)
                      +++.++..+...+++|++|++.+|. +++.+   +..+...+++|++|+++++.  ++...+..+ ..+++|++|++.+|
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            6666666666567777777777663 33322   22233345666666666663  444444443 34566666666665


Q ss_pred             CCCChhHHHHHHhcCCCccEEEeccccc-cCh---HHHHHHHhcCCCCcee-ccCCCCCccchhHHHHhhcCCCccEEEc
Q 007252          234 PCVDDTGLRFLESGCPLLKTIFVSRCKF-VSS---TGLISVIRGHSGLLQL-DAGHCFSELSTTLLHHMRDLKNLEAITM  308 (611)
Q Consensus       234 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~---~~l~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~l~~~~~L~~L~l  308 (611)
                      ..+  ..+..+...+++|++|++..+.. ...   .++...+.++++|+.+ .+...   ........+..+++|++|++
T Consensus       222 ~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~---~~~~l~~~~~~~~~L~~L~L  296 (594)
T 2p1m_B          222 VPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA---VPAYLPAVYSVCSRLTTLNL  296 (594)
T ss_dssp             SCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC---CGGGGGGGHHHHTTCCEEEC
T ss_pred             CcH--HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc---chhhHHHHHHhhCCCCEEEc
Confidence            322  22444444466666666554322 111   1233334455556555 22211   11122222334555666666


Q ss_pred             cCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEec--------C
Q 007252          309 DGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDL--------T  380 (611)
Q Consensus       309 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l--------~  380 (611)
                      +++.+++..+..+...+++|++|++                    .+|  +.+.++..+...+++|++|++        .
T Consensus       297 ~~~~l~~~~l~~~~~~~~~L~~L~l--------------------~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~  354 (594)
T 2p1m_B          297 SYATVQSYDLVKLLCQCPKLQRLWV--------------------LDY--IEDAGLEVLASTCKDLRELRVFPSEPFVME  354 (594)
T ss_dssp             TTCCCCHHHHHHHHTTCTTCCEEEE--------------------EGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSS
T ss_pred             cCCCCCHHHHHHHHhcCCCcCEEeC--------------------cCc--cCHHHHHHHHHhCCCCCEEEEecCcccccc
Confidence            6555555555444434444444443                    333  344555556656777777777        2


Q ss_pred             CCCCCChhhhhhhc-cCCCceEEEecCCCCCChHhHHHHHhcCCCCcEEecc-----CCCCCC----HHHHHHHHhcCcc
Q 007252          381 DCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLY-----KCSGIG----DDGLAALSNGCKK  450 (611)
Q Consensus       381 ~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~  450 (611)
                      ++..+++.++..+. .+++|++|.+. |..+++.++..+...+++|++|+++     +|+.++    +.++..+...|++
T Consensus       355 ~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  433 (594)
T 2p1m_B          355 PNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD  433 (594)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred             cCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence            33455555555444 36666666443 3366666666665556666666666     455666    5566666666666


Q ss_pred             CceecccccCCCChHHHHHhhC-CCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCC
Q 007252          451 LKKLNLSYCVNVTDRGMEHIRF-IEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLR  529 (611)
Q Consensus       451 L~~L~l~~c~~l~~~~~~~l~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~  529 (611)
                      |++|++++  .+++.++..+.. +++|+.|++++| .+++.++..+..++++|+.|++++| .+++.++..+...+++|+
T Consensus       434 L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          434 LRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMR  509 (594)
T ss_dssp             CCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSS
T ss_pred             ccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCC
Confidence            66666644  566666655554 666666666664 3556555555555666666666666 445555555555556666


Q ss_pred             EEEeccCCCChhHHHHHh-cccccc
Q 007252          530 QINLSYCALSDMALCMVM-GNMTRL  553 (611)
Q Consensus       530 ~L~l~~~~l~~~~~~~~l-~~~~~L  553 (611)
                      +|++++|++++.+. ..+ ..+|+|
T Consensus       510 ~L~l~~~~~~~~~~-~~l~~~lp~l  533 (594)
T 2p1m_B          510 SLWMSSCSVSFGAC-KLLGQKMPKL  533 (594)
T ss_dssp             EEEEESSCCBHHHH-HHHHHHCTTE
T ss_pred             EEeeeCCCCCHHHH-HHHHHhCCCC
Confidence            66666666665555 444 344544

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		611
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 11/223 (4%)

Query: 287 SELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKC----LGVTNT 342
           S +   L  H    + ++ + +  + I  S    I   C  L  + L         V   
Sbjct: 33  SFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 91

Query: 343 DSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFL 402
                LV L +  C+  +E  L  L S C RL+E++L+ C    +K ++           
Sbjct: 92  AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 151

Query: 403 K---LGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYC 459
           +    G  +N+    L  +   C  +  LDL     + +D           L+ L+LS C
Sbjct: 152 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRC 210

Query: 460 VNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRL 502
            ++    +  +  I  L  L++ G+  +    L  L      L
Sbjct: 211 YDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHL 251

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		611
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.9
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.89
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.85
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.66
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.59
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.58
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.5
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.16
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.14
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.14
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.13
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.11
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.09
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.04
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.03
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.97
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.93
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.91
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.9
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.89
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.8
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.77
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.75
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.65
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.65
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.58
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.53
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.52
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.52
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.52
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.5
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.5
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.48
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.43
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.41
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.31
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.26
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.03
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.94
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.88
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.65
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.31
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.05
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.98

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-22  Score=188.59  Aligned_cols=215  Identities=20%  Similarity=0.282  Sum_probs=160.1

Q ss_pred             CCCccEEEccCcccChHHHHHHHHhCCCCcEEeeccCCCCCCCCCCCCCcEEecCCCccCChhHHHHHHhccCCCcEEec
Q 007252          300 LKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTDSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDL  379 (611)
Q Consensus       300 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  379 (611)
                      ..+|++|+++++.++...+..+...+++|++|++++|.                     +++..+..+. .+++|++|++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~---------------------l~~~~~~~l~-~~~~L~~L~L  102 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR---------------------LSDPIVNTLA-KNSNLVRLNL  102 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB---------------------CCHHHHHHHT-TCTTCSEEEC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC---------------------CCcHHHHHHh-cCCCCcCccc
Confidence            34788888888888888887776666666666665542                     4455555554 5677888888


Q ss_pred             CCCCCCChhhhhhhc-cCCCceEEEecCCCCCChHhHHHH-HhcCCCCcEEeccCC-CCCCHHHHHHHHhcCccCceecc
Q 007252          380 TDCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYI-ASNCLRIQGLDLYKC-SGIGDDGLAALSNGCKKLKKLNL  456 (611)
Q Consensus       380 ~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l  456 (611)
                      ++|..+++.++..+. .+++|++|++++|..+++.++... ...+++|+.|++++| ..+++.++..++.+||+|++|++
T Consensus       103 s~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             cccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccc
Confidence            887777777766554 578888888888777777776543 445678888888886 35788888888888888999999


Q ss_pred             cccCCCChHHHHHhhCCCCCCEEecCCCccccHHHHHHHHhcCCccCEeeccccCCCCHHHHHHHHhhCCCCCEEEeccC
Q 007252          457 SYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYC  536 (611)
Q Consensus       457 ~~c~~l~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~~  536 (611)
                      ++|..+++.++..+.++++|++|++++|..+++.++..+. .+++|+.|++++|  +++.++..+...+|+|+   +..+
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~---i~~~  256 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCS  256 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ESCC
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC--CCHHHHHHHHHhCcccc---ccCc
Confidence            8888888888888888888999999888888887766654 5888888888887  56667777777777776   3444


Q ss_pred             CCChhH
Q 007252          537 ALSDMA  542 (611)
Q Consensus       537 ~l~~~~  542 (611)
                      .+++..
T Consensus       257 ~ls~~~  262 (284)
T d2astb2         257 HFTTIA  262 (284)
T ss_dssp             CSCCTT
T ss_pred             cCCCCC
Confidence            465543

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure