Citrus Sinensis ID: 007257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-
Protein Sequence
MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEccHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHcccEEEEHHHHHHccccccccccccccccEEEEEEccccccccccHHHcHHHHHHHHHHHHHHccccccccccccEEEEEcHHHHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEccccccHHcccccccccccccccccccccEEEEcccccEEEEccccHHHHcccccEEccHHHHHHHHccccccEEEEEEEccccEEEEEEEccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEcccccccccEEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEEccccccHHHHHHHEccccEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHccccccHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHcccccccccccEccccEEEEEEccccEEEEccccEEcccHHHHEEEccccccEEEEEccccccEEEEEEcccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHccccccHHEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msvqkypgnrmlgwrpfvdgkfgpyVWKTYKEVYEEVLQIVSALRAsgaepgcrvgiygancPQWVEAMEACNALSLICvplydtlgpgavnfILDHAEIDFVFVQDKKVkellspdcrsaqRLRVMVCFTSLTAEQKEMAVqtgikpyswdeflhlgkvnemeilppqpfnictimytsgtsgdpkgvvLTHETIATFVSGVDLFLDQfedkmtvddvylSFLPLAHILDRVIEEYFFRRGasvgyyhgdLNALRDDLMELKptllagvpRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMgykqreasplADLLAFRKVKARLGGRLRlvisggaplstEVEEFLRVTCCAFLVqgygltetcgpttvcfpdemcmvgtagpvsvyselrleevpemgysplddppcgevcvrgktlfsgyyknpdltresiidgwfhtgdigqilpngVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPceedtkkwaysnghagSFLELCSLVQLQNYILSELKNAAERNKlrgfehikgvildprpfdmERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Flexible Loop (DISEMBL)
msvqkypgnrmlgwrpfvdgKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEllspdcrsaqrlRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKaleelrplrRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEmgysplddppcgEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERnklrgfehikgvildprpfdMERDLVTATLKKKRNKLLIYYQVEIdqlyeklapgrr
Low Complexity Region (SEG)
MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered region (IsUnstruct)
*********RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE*******
Disordered Region (DISOPRED)
MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL**********PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL**K******
Disordered Region (DISEMBL)
MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered Region (DISPRO)
**V*KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	611	2.2.26 [Sep-21-2011]
O22898	660	Long chain acyl-CoA synth	yes	no	0.991	0.918	0.691	0.0
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.991	0.909	0.506	0.0
Q9T009	666	Long chain acyl-CoA synth	no	no	0.996	0.914	0.502	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.990	0.909	0.502	1e-179
Q9XIA9	665	Long chain acyl-CoA synth	no	no	0.988	0.908	0.476	1e-166
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.972	0.847	0.407	1e-115
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.970	0.847	0.392	1e-115
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.978	0.888	0.360	1e-111
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.963	0.883	0.376	1e-109
Q9ULC5	683	Long-chain-fatty-acid--Co	yes	no	0.937	0.838	0.367	1e-106

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/606 (69%), Positives = 507/606 (83%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           SV+K+P N MLGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG N
Sbjct: 51  SVEKFPDNNMLGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVN 110

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
           CPQW+ AMEAC A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A
Sbjct: 111 CPQWIIAMEACAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCA 170

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
           +RL+ +V FT+++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSG
Sbjct: 171 KRLKAIVSFTNVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSG 230

Query: 182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
           TSGDPKGVVLTH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+
Sbjct: 231 TSGDPKGVVLTHQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRK 290

Query: 242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
           GASVGYYHG+LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK
Sbjct: 291 GASVGYYHGNLNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYK 350

Query: 302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
           +KLAW+N GY   +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F
Sbjct: 351 HKLAWLNRGYSHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCF 410

Query: 362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 421
           +VQGYGLTET G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+
Sbjct: 411 VVQGYGLTETLGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICI 470

Query: 422 RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 481
           RG+ +FSGYYKNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE
Sbjct: 471 RGQCMFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALE 530

Query: 482 YLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ 541
           +LEN++    +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+
Sbjct: 531 HLENIFGQNSVVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELK 590

Query: 542 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 601
            +I+SELK+ AE+NKLR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+ID+
Sbjct: 591 EHIISELKSTAEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQIDE 650

Query: 602 LYEKLA 607
           +Y KLA
Sbjct: 651 MYRKLA 656

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/606 (50%), Positives = 424/606 (69%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           MSV+KYP N MLG R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGA
Sbjct: 53  MSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGA 112

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           N P+W+ +MEACNA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S
Sbjct: 113 NSPEWIISMEACNAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNS 172

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
            + ++ +V F  ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTS
Sbjct: 173 TEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTS 232

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GT+GDPKGV++++E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F +
Sbjct: 233 GTTGDPKGVMISNESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQ 292

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
            GA++G++ GD+  L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ +
Sbjct: 293 HGAAIGFWRGDVKLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAF 352

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
            YK  +M  G    EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C 
Sbjct: 353 SYKFGYMKKGQSHVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACC 412

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
            ++QGYGLTE+C  T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C
Sbjct: 413 HVLQGYGLTESCAGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEIC 472

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           +RGKTLFSGYYK  DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+
Sbjct: 473 IRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAV 532

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           E +EN+Y     ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + 
Sbjct: 533 ENIENIYGEVQAVDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKA 592

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
           + +IL EL   A+  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID
Sbjct: 593 KEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVID 652

Query: 601 QLYEKL 606
           ++Y+ +
Sbjct: 653 EMYKTI 658

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/613 (50%), Positives = 417/613 (68%), Gaps = 4/613 (0%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           +V+KYP NRMLG R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG N
Sbjct: 54  AVEKYPNNRMLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGIN 113

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
           C +W+ +MEACNA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S 
Sbjct: 114 CCEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNST 173

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
           + ++ +V F  +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSG
Sbjct: 174 KYMKTVVSFGGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSG 233

Query: 182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
           T+GDPKGV++++E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + 
Sbjct: 234 TTGDPKGVMISNESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQV 293

Query: 242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
           G S+G++ GD+  L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + 
Sbjct: 294 GGSIGFWRGDVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFS 353

Query: 302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
           YK   M  G     ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  
Sbjct: 354 YKFGNMKKGQSHVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCN 413

Query: 362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 421
           ++QGYGLTE+C  T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+
Sbjct: 414 VLQGYGLTESCAGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICI 473

Query: 422 RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 481
           RGKTLFSGYYK  DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E
Sbjct: 474 RGKTLFSGYYKREDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVE 533

Query: 482 YLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ 541
            LENVY    +IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + +
Sbjct: 534 NLENVYSQVEVIESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAK 593

Query: 542 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 601
            +IL EL   A+ NKL+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I +
Sbjct: 594 AFILGELVKTAKENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVIHE 653

Query: 602 LY----EKLAPGR 610
           +Y    E LA G+
Sbjct: 654 MYKTTKESLASGQ 666

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  630 bits (1625), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/605 (50%), Positives = 415/605 (68%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           +SV+K P N MLG R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGA
Sbjct: 53  LSVEKSPNNPMLGRREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGA 112

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           N P+W+ +MEACNA  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S
Sbjct: 113 NSPEWIISMEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKS 172

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
            + L+ +V F  +T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTS
Sbjct: 173 TKYLKYIVSFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTS 232

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GT+GDPKGV+LT+E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE    
Sbjct: 233 GTTGDPKGVLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIY 292

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
             AS+G++ GD+  L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +
Sbjct: 293 EAASIGFWRGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAF 352

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
           KYK   M  G    +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA
Sbjct: 353 KYKHKNMEKGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACA 412

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
            ++QGYGLTE+CG T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C
Sbjct: 413 HVLQGYGLTESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEIC 472

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           +RGKTLFSGYYK  DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+
Sbjct: 473 IRGKTLFSGYYKREDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAV 532

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           E LEN+Y     IE IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + 
Sbjct: 533 ENLENIYSHVAAIESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKT 592

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
           + ++L E    A+  KL+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID
Sbjct: 593 KEFVLGEFNRVAKDKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEID 652

Query: 601 QLYEK 605
           ++Y+K
Sbjct: 653 EMYKK 657

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  586 bits (1510), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/606 (47%), Positives = 396/606 (65%), Gaps = 2/606 (0%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           +V+KYP  +MLG R   D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGAN
Sbjct: 54  AVKKYPNEQMLGQRVTTDSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGAN 113

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
           CP+W+ AMEAC +  +  VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +
Sbjct: 114 CPEWIIAMEACMSQGITYVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCS 173

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
             L+ +V F  +++ QKE A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSG
Sbjct: 174 SNLKTIVSFGEVSSTQKEEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSG 233

Query: 182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
           T+G+PKGV+L +  I+  V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  R
Sbjct: 234 TTGEPKGVILNNAAISVQVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSR 293

Query: 242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
           G+SVGY+ GD+  L DD+  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y 
Sbjct: 294 GSSVGYWRGDIRYLMDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYN 353

Query: 302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
           YKL  M  G+ Q EASP  D L F K+K  LGGR  +++SG APL   VEEFLR+   + 
Sbjct: 354 YKLGNMRKGFSQEEASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASN 413

Query: 362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVC 420
           L QGYGLTE+CG +         MVGT G      E RL  VPEMGY     D P GE+C
Sbjct: 414 LSQGYGLTESCGGSFTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEIC 473

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           +RG ++FSGY+K  DLT + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+
Sbjct: 474 LRGNSMFSGYHKRQDLTDQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAV 533

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQ 539
           E LEN Y   P+I  IWVYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++
Sbjct: 534 ENLENTYSRCPLIAQIWVYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLK 593

Query: 540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 599
            Q Y L EL + A++ +L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +
Sbjct: 594 AQKYFLDELNSTAKQYQLKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIV 653

Query: 600 DQLYEK 605
           DQLY +
Sbjct: 654 DQLYSE 659

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/611 (40%), Positives = 342/611 (55%), Gaps = 17/611 (2%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           +V  +   + LG R  VDG  G Y W TY E       + S L   G   G  VGIY  N
Sbjct: 93  AVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFIN 152

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
            P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +  LLS  C S 
Sbjct: 153 RPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLS--CLSE 210

Query: 122 QRLRVMVCFTSLTAEQKEMAVQT-GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
                +V       E       + G+K  S+   L+ G+ N     PP+P ++ TI YTS
Sbjct: 211 MPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPKPDDVATICYTS 270

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI +R  +     
Sbjct: 271 GTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHIYERANQILTVY 325

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
            G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++    L+ R+F+A Y
Sbjct: 326 FGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAY 385

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
             K   +  G   + ASP+ D L F K+K RLGGR+R + SG +PLS EV EFL+V    
Sbjct: 386 NAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGG 442

Query: 361 FLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGE 418
            + +GYG+TET     +   DE   + G  G  +   E++L +VPEM Y+  D P P GE
Sbjct: 443 RVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGE 500

Query: 419 VCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY 477
           +CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +KIIDRKKN+ K++QGEY
Sbjct: 501 ICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEY 560

Query: 478 VALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG-HAGSFLELCS 536
           +A E +ENVY     +   ++YGDS  S LVAVV    +  K WA S G   G   ELC+
Sbjct: 561 IAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIKGGDLRELCN 620

Query: 537 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 596
             +++  +LS++       +LRGFE  K V L   PF +E  L+T T K KR +   Y+ 
Sbjct: 621 NPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFKIKRPQAKEYFA 680

Query: 597 VEIDQLYEKLA 607
             I  +Y++L 
Sbjct: 681 EAITNMYKELG 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/612 (39%), Positives = 344/612 (56%), Gaps = 19/612 (3%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G   G  VG+Y  N
Sbjct: 93  AVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLYFIN 152

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
            P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +  LLS      
Sbjct: 153 RPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLS-FLAEI 211

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
             +R++V           +   TG+   S+ + L  G+ +     PP+P +I TI YTSG
Sbjct: 212 PSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICYTSG 271

Query: 182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
           T+G PKGVVLTH  +   V+G  +     E +    DVY+S+LPLAHI +R  +      
Sbjct: 272 TTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIYERANQIMGVYG 326

Query: 242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
           G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    +++R+F+  Y 
Sbjct: 327 GVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLFEIAYN 386

Query: 302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
            K   +  G   R  S   D L F K+K +LGGR+R + SG +PLS +V +FLR+     
Sbjct: 387 SKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRICFGCS 443

Query: 362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVC 420
           + +GYG+TET    +    D   + G  G  +   E++L +VPEM Y+  D P P GE+C
Sbjct: 444 VREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPYPRGEIC 502

Query: 421 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
           VRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIIDRKKN+ K++QGEY+A
Sbjct: 503 VRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIA 562

Query: 480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG----HAGSFLELC 535
            E +ENVY     +   +++GDS  S LVA+V    E  K WA S G    H G   +LC
Sbjct: 563 PEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIKYEHLG---QLC 619

Query: 536 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 595
           +  +++  +L+E+ +     +LRGFE  K V L P PF +E  L+T T K KR +   Y+
Sbjct: 620 NDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPTFKIKRPQAKAYF 679

Query: 596 QVEIDQLYEKLA 607
              I ++Y ++A
Sbjct: 680 AEAISKMYAEIA 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 345/608 (56%), Gaps = 10/608 (1%)

Query: 2   SVQKYPGNRMLGWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           S +KY   +  G R    +G  G + W +Y    E    I   L   G +P  +VGI+  
Sbjct: 72  SCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSK 131

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           N  +W+    A    S   V  Y+TLG  +++++ +HAEI   F   + +++ L    + 
Sbjct: 132 NRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKG 190

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMY 178
            + L+ ++CF S+  E   +A + G+  Y++DE +  GK    + +  PP P  + TIMY
Sbjct: 191 VKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMY 250

Query: 179 TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF 238
           TSGT+G PKGV++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    
Sbjct: 251 TSGTTGPPKGVMITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAA 305

Query: 239 FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 298
           F  GA++G + GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+ 
Sbjct: 306 FHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNG 365

Query: 299 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC 358
            Y  K   +  G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  
Sbjct: 366 AYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVM 425

Query: 359 CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE 418
           C  ++QGYG +E CG       D+   VGT GP    +E++L +VPE+GY    +   GE
Sbjct: 426 CCCVLQGYGASEGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGE 484

Query: 419 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 478
           VC+RG ++ SGYYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYV
Sbjct: 485 VCLRGPSISSGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYV 544

Query: 479 ALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV 538
           A+E +E +   +  +E + +YGDS KS ++A++ P  E   +WA S        E+C   
Sbjct: 545 AVEKIETIVVKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQ 604

Query: 539 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598
                +L ++    +++ L GFE  K + L P  F  + +L+T + K KR+++  Y++ E
Sbjct: 605 DFIKVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDE 664

Query: 599 IDQLYEKL 606
           I +LY KL
Sbjct: 665 IKKLYSKL 672

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/608 (37%), Positives = 343/608 (56%), Gaps = 19/608 (3%)

Query: 3   VQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           + K   +  LG R  + DGK G Y W +YK+       I SAL   G   G R+GI+  N
Sbjct: 62  INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSIN 121

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
            P+WV +  A    SL+ V LY TLG  A+ ++++H+EI  +  + K V+++LS      
Sbjct: 122 RPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS---MPG 178

Query: 122 QRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
             ++ +V +  L  A   +      +K Y   +F  LG+ N  +   P P ++CT++YTS
Sbjct: 179 TTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPEDLCTLLYTS 238

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           G++G+PKGV+LTH  + + V+G +         +  +DV++S+LPLAH  +R +      
Sbjct: 239 GSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYLPLAHSFERAVVSLMCY 294

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
            G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   +     L++ +F+   
Sbjct: 295 VGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGL 354

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
             K + + +G      +P+ D L F K K RLGGR++ ++SG APL  ++ EFLR   C 
Sbjct: 355 NSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCC 410

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEV 419
            +V GYGL+E  G  +V +P++   VG  GP     E++L +VPEM Y   D P P GEV
Sbjct: 411 PVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEV 469

Query: 420 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 478
           C+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + IIDRKKN+ K+SQGEYV
Sbjct: 470 CIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDRKKNIFKLSQGEYV 529

Query: 479 ALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW---AYSNGHAGSFLELC 535
           A EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K     Y      +   L 
Sbjct: 530 AAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKYPELDVSNHATLA 589

Query: 536 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 595
              +L   ILS     A   KL GFE +K + ++  PF  E +L+T + K KR +L   Y
Sbjct: 590 KSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPSFKPKRPQLKERY 649

Query: 596 QVEIDQLY 603
           Q  ID LY
Sbjct: 650 QTIIDTLY 657

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/590 (36%), Positives = 341/590 (57%), Gaps = 17/590 (2%)

Query: 24  PYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEACNALSLICVP 81
           PY W +YK+V +    + S L   G  + P   VGI+  N P+W+ +  AC   S++ VP
Sbjct: 102 PYRWLSYKQVSDRAEYLGSCLLHKGYKSSPDQFVGIFAQNRPEWIISELACYTYSMVAVP 161

Query: 82  LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKE 139
           LYDTLGP A+  I++ A+I  V     +   +L  +        L+V++       + K+
Sbjct: 162 LYDTLGPEAIVHIVNKADIAMVICDTPQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQ 221

Query: 140 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF 199
              ++GI+  S  +  +LGK +  + +PP P ++  I +TSGT+GDPKG ++TH+ I   
Sbjct: 222 RGEKSGIEILSLYDAENLGKEHFRKPVPPSPEDLSVICFTSGTTGDPKGAMITHQNI--- 278

Query: 200 VSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 257
           VS    FL   E     T DDV +S+LPLAH+ +R+++   +  GA VG++ GD+  L D
Sbjct: 279 VSNAAAFLKCVEHAYEPTPDDVAISYLPLAHMFERIVQAVVYSCGARVGFFQGDIRLLAD 338

Query: 258 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317
           D+  LKPTL   VPR+  +I++ ++   E   PL++ +       K   +  G  + ++ 
Sbjct: 339 DMKTLKPTLFPAVPRLLNRIYDKVQN--EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS- 395

Query: 318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 377
              D L F K++  LGGR+R++++G AP+ST V  F R      + + YG TE  G  T 
Sbjct: 396 -FWDKLIFAKIQDSLGGRVRVIVTGAAPMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTF 454

Query: 378 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 437
             P +        P++  + ++LE+V +M Y  +++   GEVC++G  +F GY K+P+ T
Sbjct: 455 TLPGDWTSGHVGVPLAC-NYVKLEDVADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKT 511

Query: 438 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 496
           +E++  DGW HTGDIG+ LPNG +KIIDRKKN+ K++QGEY+A E +EN+Y  +  +  I
Sbjct: 512 QEALDSDGWLHTGDIGRWLPNGTLKIIDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQI 571

Query: 497 WVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK 556
           +V+G+SL+S LV VVVP  +    +A   G  GSF ELC    ++  IL +L+   + + 
Sbjct: 572 FVHGESLRSSLVGVVVPDTDVLPSFAAKLGVKGSFEELCQNQVVREAILEDLQKIGKESG 631

Query: 557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 606
           L+ FE +K + L P PF +E  L+T TLK KR +L  Y++ +ID LYE +
Sbjct: 632 LKTFEQVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLYEHI 681

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	611
255548375	660	long-chain-fatty-acid CoA ligase, putati	0.998	0.924	0.801	0.0
224068616	665	predicted protein [Populus trichocarpa]	0.996	0.915	0.787	0.0
225437622	662	PREDICTED: long chain acyl-CoA synthetas	1.0	0.922	0.774	0.0
356505647	662	PREDICTED: long chain acyl-CoA synthetas	0.993	0.916	0.774	0.0
356572815	662	PREDICTED: long chain acyl-CoA synthetas	0.991	0.915	0.772	0.0
356534712	660	PREDICTED: long chain acyl-CoA synthetas	0.993	0.919	0.764	0.0
357511417	668	Annotation was added to scaffolds in Nov	0.990	0.905	0.739	0.0
356499773	660	PREDICTED: long chain acyl-CoA synthetas	0.991	0.918	0.768	0.0
449518374	660	PREDICTED: long chain acyl-CoA synthetas	0.991	0.918	0.744	0.0
357442179	686	Annotation was added to scaffolds in Nov	0.988	0.880	0.711	0.0

>gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score = 1025 bits (2650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/610 (80%), Positives = 541/610 (88%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           +SV+KYP N+MLGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+
Sbjct: 50  VSVKKYPENKMLGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGS 109

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           NCPQW+ AMEAC+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC S
Sbjct: 110 NCPQWIVAMEACSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGS 169

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
           A RL+ +VCFTSLT E+K+ A Q  IKPYSW+EFL LGK N  E  PP PF+ICTIMYTS
Sbjct: 170 ASRLKTVVCFTSLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTS 229

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GTSGDPKGVVLTHE + +F+  VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR
Sbjct: 230 GTSGDPKGVVLTHEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFR 289

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
           +GA+VGYYHGDLNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALY
Sbjct: 290 KGAAVGYYHGDLNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALY 349

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
           KYKL WMN+GYKQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCA
Sbjct: 350 KYKLYWMNLGYKQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCA 409

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
           F+VQGYGLTETCGP T+ FPDEMCM+G  G V V +ELRLEEVPEMGY+PL +PP GE+C
Sbjct: 410 FVVQGYGLTETCGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEIC 469

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           VRGKTLFSGYYKNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+AL
Sbjct: 470 VRGKTLFSGYYKNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIAL 529

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           EYLENVY + PI+EDIWVYGDS K ML+AVV   EE+TKKWAY NG   SF  LCSL QL
Sbjct: 530 EYLENVYSITPIVEDIWVYGDSSKPMLIAVVALNEENTKKWAYLNGFLDSFSALCSLDQL 589

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
             Y+LSELK+ AERNKLRGFE IKG IL+ RPFDMERDLVTATLKKKRNKLL YYQ+EID
Sbjct: 590 HEYVLSELKSTAERNKLRGFERIKGAILESRPFDMERDLVTATLKKKRNKLLSYYQLEID 649

Query: 601 QLYEKLAPGR 610
           QLY+ L   R
Sbjct: 650 QLYKTLGGKR 659

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa]

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/612 (78%), Positives = 544/612 (88%), Gaps = 3/612 (0%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           S +KYP  +MLGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+N
Sbjct: 53  SAKKYPEYKMLGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSN 112

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
           CPQW+EAMEACNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SA
Sbjct: 113 CPQWIEAMEACNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASA 172

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
           QRL+ +VCFTSLT E+K+ A Q GIK YSW+E+L +GK N  EI PPQP +ICTIMYTSG
Sbjct: 173 QRLKAIVCFTSLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSG 232

Query: 182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
           TSGDPKGVV+ HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+
Sbjct: 233 TSGDPKGVVILHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRK 292

Query: 242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDA 298
           GASVGYYHGDLNALRDDLMELKPT LAGVPRVFEKI EG++   KAL+EL PLRR IFD 
Sbjct: 293 GASVGYYHGDLNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDV 352

Query: 299 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC 358
           LY+YKL WMN GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT 
Sbjct: 353 LYRYKLGWMNRGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTS 412

Query: 359 CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE 418
           CAF++QGYGLTE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE
Sbjct: 413 CAFVIQGYGLTESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGE 472

Query: 419 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 478
           +C+RGKTLFSGYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+
Sbjct: 473 ICLRGKTLFSGYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYI 532

Query: 479 ALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV 538
           A+EYLENVY   PI+EDIW+YGDS KSMLVAVVV  EE+TK WAY NGH GSF ELCSL 
Sbjct: 533 AIEYLENVYNNTPIVEDIWIYGDSCKSMLVAVVVLHEENTKSWAYLNGHMGSFTELCSLH 592

Query: 539 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 598
           QLQ  +LSELK  AERNKL+GFEHIKGVIL+  PFD+E+DLVTATLKKKRNKL+ +Y+VE
Sbjct: 593 QLQKLVLSELKTTAERNKLKGFEHIKGVILESCPFDIEKDLVTATLKKKRNKLVSHYRVE 652

Query: 599 IDQLYEKLAPGR 610
           ID+LY+KLA GR
Sbjct: 653 IDELYQKLAEGR 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera]

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/611 (77%), Positives = 539/611 (88%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           +S +KYPGNRMLGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+
Sbjct: 50  ISSEKYPGNRMLGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGS 109

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           NCPQW+ AMEAC+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRS
Sbjct: 110 NCPQWIVAMEACSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRS 169

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
           A+RL++MVCFTS T EQK+ A   GIKPYSWDEFLH+GK N  E+ PPQP +ICTIMYTS
Sbjct: 170 AKRLKLMVCFTSPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTS 229

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GTSGDPKGVVLTHE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF 
Sbjct: 230 GTSGDPKGVVLTHENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFH 289

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
           +GASVGYYHGD+NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF  LY
Sbjct: 290 KGASVGYYHGDMNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLY 349

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
           KYKL+WMN GYK REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CA
Sbjct: 350 KYKLSWMNSGYKHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCA 409

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
           FL QGYGLTETCG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P  DPP GE+C
Sbjct: 410 FLTQGYGLTETCGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEIC 469

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           VRGKT+F+GY+KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+
Sbjct: 470 VRGKTIFAGYHKNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAV 529

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           EYLE VY  A I+EDIWVYG+S KSMLVAVVVP EE+TKKWA  NGH GS  ELCSL  L
Sbjct: 530 EYLEKVYGTADIVEDIWVYGNSFKSMLVAVVVPHEENTKKWADLNGHKGSLSELCSLNLL 589

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
            +Y+LSELK AAE +KLRGFEHIKGVIL+ R F+ E+DLVT TLKK+R+K+L +YQ +ID
Sbjct: 590 HSYVLSELKAAAELSKLRGFEHIKGVILEARLFEAEQDLVTPTLKKRRDKMLKHYQAKID 649

Query: 601 QLYEKLAPGRR 611
           +LY  L  GR 
Sbjct: 650 ELYANLGEGRH 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/607 (77%), Positives = 536/607 (88%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           M+V+KYP NRMLGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGA
Sbjct: 50  MAVKKYPKNRMLGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGA 109

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           NCPQW+ AMEAC A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV  LL+PDC+S
Sbjct: 110 NCPQWIVAMEACCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKS 169

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
           AQRL+ MV FTSLT E+K+ A+  GIKPYSW EFLH+GK N   I  PQP NICTIMYTS
Sbjct: 170 AQRLKAMVSFTSLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTS 229

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GTSGDPKGVVLTHE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF 
Sbjct: 230 GTSGDPKGVVLTHENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFH 289

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
           +GASVGYYHGDLNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LY
Sbjct: 290 KGASVGYYHGDLNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLY 349

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
           K+KL WMN GYK   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CA
Sbjct: 350 KHKLGWMNKGYKHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCA 409

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
           F+ QGYGLTETCG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL  P CGE+C
Sbjct: 410 FVCQGYGLTETCGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEIC 469

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           +RGKT+F+GYYKNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+AL
Sbjct: 470 LRGKTVFTGYYKNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIAL 529

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           E+LENVY + PI+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL
Sbjct: 530 EHLENVYGITPIVEDVWVYGNSFKSALVAVVVPNEEITKKWAFSNGHIAPFSKLCSLDQL 589

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
           + ++LSELK  AERNKL+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVEID
Sbjct: 590 KKHVLSELKVTAERNKLKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVEID 649

Query: 601 QLYEKLA 607
            +Y  L+
Sbjct: 650 DVYRSLS 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/606 (77%), Positives = 535/606 (88%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           M+V+KY  NRMLGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGA
Sbjct: 50  MAVKKYRKNRMLGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGA 109

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           NCPQW+ AMEAC A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV  LL+PDC+S
Sbjct: 110 NCPQWIVAMEACCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKS 169

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
           AQRL+ MV FTSLT E+K+ A+  GIKPYSW+EFLH+GK N   I PPQP +ICTIMYTS
Sbjct: 170 AQRLKAMVSFTSLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTS 229

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GTSGDPKGVVLTHE I  FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF 
Sbjct: 230 GTSGDPKGVVLTHENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFH 289

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
           +GASVGYYHGDLNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LY
Sbjct: 290 KGASVGYYHGDLNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLY 349

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
           K+KL WMN GYK   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CA
Sbjct: 350 KHKLGWMNKGYKHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCA 409

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
           F+ QGYGLTETCG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL  P CGE+C
Sbjct: 410 FVCQGYGLTETCGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEIC 469

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           +RGKT+F+GYYKNP+LTRE+I DGWFHTGDI ++  NG VKIIDRKKNLIK+SQGEY+AL
Sbjct: 470 LRGKTVFTGYYKNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIAL 529

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           E+LENVY + PI+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL
Sbjct: 530 EHLENVYGITPIVEDVWVYGNSFKSALVAVVVPNEETTKKWAFSNGHMAPFSKLCSLDQL 589

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
           + ++LSELK  AERNKL+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVEID
Sbjct: 590 KKHVLSELKMTAERNKLKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVEID 649

Query: 601 QLYEKL 606
           +LY  L
Sbjct: 650 ELYRSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/607 (76%), Positives = 532/607 (87%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           +SV+ +P NRMLG R  VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+
Sbjct: 50  VSVKNHPNNRMLGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGS 109

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           NCP+W+ AME C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S
Sbjct: 110 NCPEWIVAMEVCSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKS 169

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
           ++RL+ MVCFT+LT E+K  A   GIKPYSW EFLHLGK N     PPQ  +ICTIMYTS
Sbjct: 170 SKRLKAMVCFTTLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTS 229

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GTSGDPKGVVLT+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR
Sbjct: 230 GTSGDPKGVVLTYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFR 289

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
           +GASVGYYHGDLNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY
Sbjct: 290 KGASVGYYHGDLNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLY 349

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
            YKL WM  GYK REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CA
Sbjct: 350 NYKLGWMKKGYKHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCA 409

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
           F+ QGYGLTETCGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+C
Sbjct: 410 FVCQGYGLTETCGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEIC 469

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           VRGKT+F+ YYKNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+AL
Sbjct: 470 VRGKTVFTAYYKNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIAL 529

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           E+LENVY + PI+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF +LCSL QL
Sbjct: 530 EHLENVYGITPIVEDIWVYGNSFKSMLVAVVVPNEEFANKWAYSNGHIASFPKLCSLDQL 589

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
           + Y+LSELK  AERNKLRGFEHIKGVIL+P  FDMERDLVTATLKKKRNKLL YYQVEID
Sbjct: 590 KKYVLSELKLTAERNKLRGFEHIKGVILEPHEFDMERDLVTATLKKKRNKLLKYYQVEID 649

Query: 601 QLYEKLA 607
           ++Y+ L 
Sbjct: 650 EIYQSLT 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/611 (73%), Positives = 530/611 (86%), Gaps = 6/611 (0%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           ++ +KYP NRMLGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+
Sbjct: 50  VAAKKYPQNRMLGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGS 109

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           NCPQW+ AMEAC A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+S
Sbjct: 110 NCPQWIVAMEACCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKS 169

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
           A RL+ +VCFT LT E+K+ A   G+KPYSW+EFL +GK     I PPQ  +ICTIMYTS
Sbjct: 170 ASRLKAIVCFTKLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTS 229

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GTSGDP+GVVLTHE I  FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF 
Sbjct: 230 GTSGDPQGVVLTHENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFH 289

Query: 241 RGASVGYYHG------DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 294
           +GASVGYYHG      DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR 
Sbjct: 290 KGASVGYYHGVYSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRT 349

Query: 295 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFL 354
           +F  LYK KL WM  GYK   ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFL
Sbjct: 350 VFGMLYKRKLGWMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFL 409

Query: 355 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP 414
           RVT  AF+ QGYGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P
Sbjct: 410 RVTSGAFVCQGYGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNP 469

Query: 415 PCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ 474
            CGE+C+RGK++FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQ
Sbjct: 470 SCGEICLRGKSVFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQ 529

Query: 475 GEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLEL 534
           GEY+ALEYLENVY + PI+ED+WVYG+S KS+LVAVVVP EE TKKWAY+NG  GSF EL
Sbjct: 530 GEYIALEYLENVYGITPIVEDVWVYGNSFKSVLVAVVVPNEEITKKWAYTNGFVGSFSEL 589

Query: 535 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 594
           CSL + + Y+LSELK  AERNKL+GFE IKGVILDP PFDMERDLVTATLKK+RN +L Y
Sbjct: 590 CSLDEFKKYVLSELKLTAERNKLKGFEQIKGVILDPHPFDMERDLVTATLKKRRNNMLKY 649

Query: 595 YQVEIDQLYEK 605
           YQVEID++Y++
Sbjct: 650 YQVEIDEVYQR 660

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/606 (76%), Positives = 532/606 (87%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           +SV+ +P NRMLG R  VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+
Sbjct: 50  VSVKNHPNNRMLGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGS 109

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           NCP+W+ AMEAC+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S
Sbjct: 110 NCPEWIVAMEACSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKS 169

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
           ++RL+ MVCFTSLT E+K  A   GIKPYSW +FLHLGK N     PPQ  +ICTIMYTS
Sbjct: 170 SKRLKAMVCFTSLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTS 229

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GTSGDPKGVVLT+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR
Sbjct: 230 GTSGDPKGVVLTNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFR 289

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
           +GASVGYYHGDLNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY
Sbjct: 290 KGASVGYYHGDLNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLY 349

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
            YKL WM  GYK R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CA
Sbjct: 350 NYKLGWMKKGYKHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCA 409

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
           F+ QGYGLTETCGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+C
Sbjct: 410 FVCQGYGLTETCGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEIC 469

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           VRGKT+F+GYYKNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+AL
Sbjct: 470 VRGKTVFTGYYKNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIAL 529

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           E+LENVY V PI+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF  LCSL QL
Sbjct: 530 EHLENVYGVTPIVEDIWVYGNSFKSMLVAVVVPNEEVANKWAYSNGHIASFPILCSLDQL 589

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
           + Y+LSELK  AERNKLRGFEHIKGVIL+P+ FDMERDLVTATLKKKRNKLL YYQVEID
Sbjct: 590 KKYVLSELKLTAERNKLRGFEHIKGVILEPQEFDMERDLVTATLKKKRNKLLKYYQVEID 649

Query: 601 QLYEKL 606
           +LY+ L
Sbjct: 650 ELYQSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus]

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/607 (74%), Positives = 523/607 (86%), Gaps = 1/607 (0%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           +S  KY   RMLGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGA
Sbjct: 50  VSANKYAERRMLGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGA 109

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           NCPQW+ AMEACNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+  C  
Sbjct: 110 NCPQWIVAMEACNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTI 169

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYT 179
            +RL+V +CFTSL  E+K  A   G+KPYSWDEFL L  K N  EI PP+P +ICTIMYT
Sbjct: 170 PERLKVFICFTSLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYT 229

Query: 180 SGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 239
           SGTSG PKGVVLT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFF
Sbjct: 230 SGTSGTPKGVVLTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFF 289

Query: 240 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 299
           R+GASVGYYHGDL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD L
Sbjct: 290 RKGASVGYYHGDLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLL 349

Query: 300 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC 359
           YKYKL+WMN GYKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCC
Sbjct: 350 YKYKLSWMNSGYKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCC 409

Query: 360 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 419
           AF VQGYGLTETCGPTT+ FPDEMCM+G  G V++++EL LEEVP+MGY+PL D PCGE+
Sbjct: 410 AFFVQGYGLTETCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEI 469

Query: 420 CVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
           CVRGKT+F+ YYK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+A
Sbjct: 470 CVRGKTVFTEYYKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIA 529

Query: 480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 539
           LEYLENVY + PI+EDIW+YG+S KSMLVAVVV  EE+TKKWA SNG   SF ELC L Q
Sbjct: 530 LEYLENVYSITPIVEDIWIYGNSFKSMLVAVVVLHEENTKKWANSNGFLCSFSELCPLEQ 589

Query: 540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 599
           L++Y+LSEL + AERNKL+ FE+IKGV+L+ RPFD+E+DLVTATLKKKRN LL +Y+V+I
Sbjct: 590 LRHYVLSELTSTAERNKLKRFEYIKGVVLELRPFDIEKDLVTATLKKKRNNLLKHYEVQI 649

Query: 600 DQLYEKL 606
           +  Y+ L
Sbjct: 650 NAEYKNL 656

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442179|ref|XP_003591367.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355480415|gb|AES61618.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula]

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/610 (71%), Positives = 515/610 (84%), Gaps = 6/610 (0%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           SV+K+P NRMLGWR  VDGK GPYVWKTYKE Y+EVLQI SAL+A GA+ G ++GIYG+N
Sbjct: 73  SVKKHPQNRMLGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSN 132

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
           CPQW+ AMEAC+A + ICVPLYDTLG GA+NFI+DHAEID+VFVQDKKVKELL+ DC+S+
Sbjct: 133 CPQWIIAMEACSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSS 192

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
           +RL+ +V FTSLT E+K+ A   GIKPY+W++F+  GK N   I PP   +ICTIMYTSG
Sbjct: 193 KRLKAIVGFTSLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSINPPLAHDICTIMYTSG 252

Query: 182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFR 240
           TSGDPKGVVLTHE +   V G+DLF++QFEDK MTVDDVYLSFLPLAHILDR IEEYFFR
Sbjct: 253 TSGDPKGVVLTHENVLALVRGMDLFMEQFEDKVMTVDDVYLSFLPLAHILDRCIEEYFFR 312

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
            GASVGYYHGDLNAL +DL ELKPTL AGVPRVFEK++EG+    E     +    ++ +
Sbjct: 313 NGASVGYYHGDLNALLEDLSELKPTLFAGVPRVFEKVYEGMVTYQESSGTTKSSEENSFW 372

Query: 301 K--YKLAWMNMGYKQREASPLADLLAFRKV-KARLGGRLRLVISGGAPLSTEVEEFLRVT 357
                L WMN GY QREAS LADLLAFRKV KARLGGR+RL+ISGGA LS+E+EEFLRVT
Sbjct: 373 HALQLLGWMNKGYTQREASRLADLLAFRKVVKARLGGRVRLIISGGAALSSEIEEFLRVT 432

Query: 358 CCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG 417
            CAF+ QGYGLTETCGPTT+ FPDEMCM+G  G V+V++ELRLEEVP+MGY+PL  PPCG
Sbjct: 433 TCAFVCQGYGLTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCG 492

Query: 418 EVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY 477
           E+CVRGK++F+GY+KNP+LT+E+IIDGWFHTGDIG++LPNG+++IIDRKKNL+K+SQGEY
Sbjct: 493 EICVRGKSVFTGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIIRIIDRKKNLVKLSQGEY 552

Query: 478 VALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 537
           +ALEYLENVY + PI+EDIWVYG+S KSMLVAVVVP E+ T KWAY+NGH  SF +LCSL
Sbjct: 553 IALEYLENVYTITPIVEDIWVYGNSFKSMLVAVVVPNEDVTNKWAYANGHISSFSKLCSL 612

Query: 538 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 597
            QL+ Y+LSELK+ A RNK  GFEHIKGVILDP PFDMERDLVTATLKKKRN +L YY+V
Sbjct: 613 DQLKKYVLSELKSTAVRNK--GFEHIKGVILDPLPFDMERDLVTATLKKKRNNMLKYYKV 670

Query: 598 EIDQLYEKLA 607
           +ID+LY+ L 
Sbjct: 671 DIDELYKSLT 680

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	611
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.991	0.918	0.691	9.8e-238
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.991	0.909	0.506	1e-169
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.996	0.914	0.502	2.2e-167
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.990	0.909	0.502	4.8e-165
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.988	0.908	0.476	4.5e-153
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.965	0.841	0.412	1.4e-112
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.973	0.85	0.393	2.4e-108
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.975	0.885	0.363	1.4e-105
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.947	0.822	0.372	6.7e-104
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.960	0.880	0.381	1.4e-103

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 2292 (811.9 bits), Expect = 9.8e-238, P = 9.8e-238
 Identities = 419/606 (69%), Positives = 507/606 (83%)

Query:     2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
             SV+K+P N MLGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG N
Sbjct:    51 SVEKFPDNNMLGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVN 110

Query:    62 CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
             CPQW+ AMEAC A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A
Sbjct:   111 CPQWIIAMEACAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCA 170

Query:   122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
             +RL+ +V FT+++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSG
Sbjct:   171 KRLKAIVSFTNVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSG 230

Query:   182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
             TSGDPKGVVLTH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+
Sbjct:   231 TSGDPKGVVLTHQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRK 290

Query:   242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
             GASVGYYHG+LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK
Sbjct:   291 GASVGYYHGNLNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYK 350

Query:   302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
             +KLAW+N GY   +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F
Sbjct:   351 HKLAWLNRGYSHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCF 410

Query:   362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 421
             +VQGYGLTET G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+
Sbjct:   411 VVQGYGLTETLGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICI 470

Query:   422 RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 481
             RG+ +FSGYYKNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE
Sbjct:   471 RGQCMFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALE 530

Query:   482 YLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ 541
             +LEN++    +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+
Sbjct:   531 HLENIFGQNSVVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELK 590

Query:   542 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 601
              +I+SELK+ AE+NKLR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+ID+
Sbjct:   591 EHIISELKSTAEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQIDE 650

Query:   602 LYEKLA 607
             +Y KLA
Sbjct:   651 MYRKLA 656

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1650 (585.9 bits), Expect = 1.0e-169, P = 1.0e-169
 Identities = 307/606 (50%), Positives = 424/606 (69%)

Query:     1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
             MSV+KYP N MLG R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGA
Sbjct:    53 MSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGA 112

Query:    61 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
             N P+W+ +MEACNA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S
Sbjct:   113 NSPEWIISMEACNAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNS 172

Query:   121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
              + ++ +V F  ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTS
Sbjct:   173 TEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTS 232

Query:   181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
             GT+GDPKGV++++E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F +
Sbjct:   233 GTTGDPKGVMISNESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQ 292

Query:   241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
              GA++G++ GD+  L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ +
Sbjct:   293 HGAAIGFWRGDVKLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAF 352

Query:   301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
              YK  +M  G    EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C 
Sbjct:   353 SYKFGYMKKGQSHVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACC 412

Query:   361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
              ++QGYGLTE+C  T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C
Sbjct:   413 HVLQGYGLTESCAGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEIC 472

Query:   421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
             +RGKTLFSGYYK  DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+
Sbjct:   473 IRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAV 532

Query:   481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
             E +EN+Y     ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + 
Sbjct:   533 ENIENIYGEVQAVDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKA 592

Query:   541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
             + +IL EL   A+  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID
Sbjct:   593 KEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVID 652

Query:   601 QLYEKL 606
             ++Y+ +
Sbjct:   653 EMYKTI 658

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
 Identities = 308/613 (50%), Positives = 417/613 (68%)

Query:     2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
             +V+KYP NRMLG R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG N
Sbjct:    54 AVEKYPNNRMLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGIN 113

Query:    62 CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
             C +W+ +MEACNA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S 
Sbjct:   114 CCEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNST 173

Query:   122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
             + ++ +V F  +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSG
Sbjct:   174 KYMKTVVSFGGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSG 233

Query:   182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
             T+GDPKGV++++E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + 
Sbjct:   234 TTGDPKGVMISNESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQV 293

Query:   242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
             G S+G++ GD+  L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + 
Sbjct:   294 GGSIGFWRGDVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFS 353

Query:   302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
             YK   M  G     ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  
Sbjct:   354 YKFGNMKKGQSHVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCN 413

Query:   362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 421
             ++QGYGLTE+C  T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+
Sbjct:   414 VLQGYGLTESCAGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICI 473

Query:   422 RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 481
             RGKTLFSGYYK  DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E
Sbjct:   474 RGKTLFSGYYKREDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVE 533

Query:   482 YLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ 541
              LENVY    +IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + +
Sbjct:   534 NLENVYSQVEVIESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAK 593

Query:   542 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 601
              +IL EL   A+ NKL+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I +
Sbjct:   594 AFILGELVKTAKENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVIHE 653

Query:   602 LY----EKLAPGR 610
             +Y    E LA G+
Sbjct:   654 MYKTTKESLASGQ 666

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1606 (570.4 bits), Expect = 4.8e-165, P = 4.8e-165
 Identities = 304/605 (50%), Positives = 415/605 (68%)

Query:     1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
             +SV+K P N MLG R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGA
Sbjct:    53 LSVEKSPNNPMLGRREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGA 112

Query:    61 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
             N P+W+ +MEACNA  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S
Sbjct:   113 NSPEWIISMEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKS 172

Query:   121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
              + L+ +V F  +T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTS
Sbjct:   173 TKYLKYIVSFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTS 232

Query:   181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
             GT+GDPKGV+LT+E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE    
Sbjct:   233 GTTGDPKGVLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIY 292

Query:   241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
               AS+G++ GD+  L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +
Sbjct:   293 EAASIGFWRGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAF 352

Query:   301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
             KYK   M  G    +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA
Sbjct:   353 KYKHKNMEKGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACA 412

Query:   361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
              ++QGYGLTE+CG T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C
Sbjct:   413 HVLQGYGLTESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEIC 472

Query:   421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
             +RGKTLFSGYYK  DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+
Sbjct:   473 IRGKTLFSGYYKREDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAV 532

Query:   481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
             E LEN+Y     IE IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + 
Sbjct:   533 ENLENIYSHVAAIESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKT 592

Query:   541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
             + ++L E    A+  KL+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID
Sbjct:   593 KEFVLGEFNRVAKDKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEID 652

Query:   601 QLYEK 605
             ++Y+K
Sbjct:   653 EMYKK 657

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1493 (530.6 bits), Expect = 4.5e-153, P = 4.5e-153
 Identities = 289/606 (47%), Positives = 396/606 (65%)

Query:     2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
             +V+KYP  +MLG R   D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGAN
Sbjct:    54 AVKKYPNEQMLGQRVTTDSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGAN 113

Query:    62 CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
             CP+W+ AMEAC +  +  VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +
Sbjct:   114 CPEWIIAMEACMSQGITYVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCS 173

Query:   122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
               L+ +V F  +++ QKE A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSG
Sbjct:   174 SNLKTIVSFGEVSSTQKEEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSG 233

Query:   182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
             T+G+PKGV+L +  I+  V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  R
Sbjct:   234 TTGEPKGVILNNAAISVQVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSR 293

Query:   242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
             G+SVGY+ GD+  L DD+  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y 
Sbjct:   294 GSSVGYWRGDIRYLMDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYN 353

Query:   302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
             YKL  M  G+ Q EASP  D L F K+K  LGGR  +++SG APL   VEEFLR+   + 
Sbjct:   354 YKLGNMRKGFSQEEASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASN 413

Query:   362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVC 420
             L QGYGLTE+CG +         MVGT G      E RL  VPEMGY     D P GE+C
Sbjct:   414 LSQGYGLTESCGGSFTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEIC 473

Query:   421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
             +RG ++FSGY+K  DLT + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+
Sbjct:   474 LRGNSMFSGYHKRQDLTDQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAV 533

Query:   481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQ 539
             E LEN Y   P+I  IWVYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++
Sbjct:   534 ENLENTYSRCPLIAQIWVYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLK 593

Query:   540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 599
              Q Y L EL + A++ +L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +
Sbjct:   594 AQKYFLDELNSTAKQYQLKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIV 653

Query:   600 DQLYEK 605
             DQLY +
Sbjct:   654 DQLYSE 659

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 253/613 (41%), Positives = 351/613 (57%)

Query:     2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
             +V  +   + LG R  VDG  G Y W TY E       + S L   G   G  VGIY  N
Sbjct:    93 AVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFIN 152

Query:    62 CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
              P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +  LLS  C S 
Sbjct:   153 RPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLS--CLSE 210

Query:   122 Q-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
                +R++V    L      +   +G+K  S+   L+ G+ N     PP+P ++ TI YTS
Sbjct:   211 MPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPKPDDVATICYTS 270

Query:   181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR---VIEEY 237
             GT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI +R   ++  Y
Sbjct:   271 GTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISYLPLAHIYERANQILTVY 325

Query:   238 FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 297
             F   G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++    L+ R+F+
Sbjct:   326 F---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFN 382

Query:   298 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 357
             A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + SG +PLS EV EFL+V 
Sbjct:   383 AAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVC 439

Query:   358 CCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-P 415
                 + +GYG+TET C  + +   D +   G  G  +   E++L +VPEM Y+  D P P
Sbjct:   440 FGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVKLVDVPEMNYTSADQPHP 497

Query:   416 CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ 474
              GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +KIIDRKKN+ K++Q
Sbjct:   498 RGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQ 557

Query:   475 GEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL-E 533
             GEY+A E +ENVY     +   ++YGDS  S LVAVV    +  K WA S G  G  L E
Sbjct:   558 GEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIKGGDLRE 617

Query:   534 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 593
             LC+  +++  +LS++       +LRGFE  K V L   PF +E  L+T T K KR +   
Sbjct:   618 LCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFKIKRPQAKE 677

Query:   594 YYQVEIDQLYEKL 606
             Y+   I  +Y++L
Sbjct:   678 YFAEAITNMYKEL 690

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 240/610 (39%), Positives = 345/610 (56%)

Query:     2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
             +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G   G  VG+Y  N
Sbjct:    93 AVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLYFIN 152

Query:    62 CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
              P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +  LLS      
Sbjct:   153 RPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLS-FLAEI 211

Query:   122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
               +R++V           +   TG+   S+ + L  G+ +     PP+P +I TI YTSG
Sbjct:   212 PSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICYTSG 271

Query:   182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
             T+G PKGVVLTH  +   V+G  +  + F       DVY+S+LPLAHI +R  +      
Sbjct:   272 TTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYLPLAHIYERANQIMGVYG 326

Query:   242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
             G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    +++R+F+  Y 
Sbjct:   327 GVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLFEIAYN 386

Query:   302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
              K   +  G   R  S   D L F K+K +LGGR+R + SG +PLS +V +FLR+     
Sbjct:   387 SKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRICFGCS 443

Query:   362 LVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEV 419
             + +GYG+TET C  + +   D +   G  G  +   E++L +VPEM Y+  D P P GE+
Sbjct:   444 VREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDVPEMNYTSDDQPYPRGEI 501

Query:   420 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 478
             CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIIDRKKN+ K++QGEY+
Sbjct:   502 CVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYI 561

Query:   479 ALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL-ELCSL 537
             A E +ENVY     +   +++GDS  S LVA+V    E  K WA S G     L +LC+ 
Sbjct:   562 APEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIKYEHLGQLCND 621

Query:   538 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 597
              +++  +L+E+ +     +LRGFE  K V L P PF +E  L+T T K KR +   Y+  
Sbjct:   622 PRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPTFKIKRPQAKAYFAE 681

Query:   598 EIDQLYEKLA 607
              I ++Y ++A
Sbjct:   682 AISKMYAEIA 691

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 222/610 (36%), Positives = 347/610 (56%)

Query:     2 SVQKYPGNRMLGWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
             S +KY   +  G R    +G  G + W +Y    E    I   L   G +P  +VGI+  
Sbjct:    72 SCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSK 131

Query:    61 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
             N  +W+    A    S   V  Y+TLG  +++++ +HAEI   F   + +++ L    + 
Sbjct:   132 NRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKG 190

Query:   121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMY 178
              + L+ ++CF S+  E   +A + G+  Y++DE +  GK  N + +  PP P  + TIMY
Sbjct:   191 VKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMY 250

Query:   179 TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF 238
             TSGT+G PKGV++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    
Sbjct:   251 TSGTTGPPKGVMITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAA 305

Query:   239 FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 298
             F  GA++G + GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+ 
Sbjct:   306 FHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNG 365

Query:   299 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC 358
              Y  K   +  G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  
Sbjct:   366 AYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVM 425

Query:   359 CAFLVQGYGLTETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC 416
             C  ++QGYG +E CG    C    DE   VGT GP    +E++L +VPE+GY    +   
Sbjct:   426 CCCVLQGYGASEGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQT 482

Query:   417 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 476
             GEVC+RG ++ SGYYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGE
Sbjct:   483 GEVCLRGPSISSGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGE 542

Query:   477 YVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS 536
             YVA+E +E +   +  +E + +YGDS KS ++A++ P  E   +WA S        E+C 
Sbjct:   543 YVAVEKIETIVVKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICK 602

Query:   537 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 596
                    +L ++    +++ L GFE  K + L P  F  + +L+T + K KR+++  Y++
Sbjct:   603 NQDFIKVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFE 662

Query:   597 VEIDQLYEKL 606
              EI +LY KL
Sbjct:   663 DEIKKLYSKL 672

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 223/599 (37%), Positives = 344/599 (57%)

Query:    12 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 71
             LGWR  +     PY W  Y E         + + A GA P   +GIY  N P+W+   + 
Sbjct:   121 LGWRETLTS---PYQWINYDEALLRAKNFGAGMLALGARPKQLIGIYSQNRPEWILYEQG 177

Query:    72 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCF 130
             C + SL+ VPLYDTLGP A  FI+   ++  V V+D  K   LL    RS   L+++V  
Sbjct:   178 CYSFSLVVVPLYDTLGPDACAFIIRQTDMQVVIVEDDGKAAMLLEKAPRS---LKIIVAI 234

Query:   131 TSLTAEQKEMAVQTGIKPYSWDEFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGV 189
               +     E A   GI+ +S+ +   LG K N  E+ PP   ++CT+ YTSGT+G+PKGV
Sbjct:   235 KPIRQTTLERARSRGIQIFSFIDVEKLGAKGNHPEV-PPTAEDLCTVCYTSGTTGNPKGV 293

Query:   190 VLTHETIATFVSGV-DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 248
             +LTH  +   V+GV  + L   + ++   DV +SFLPLAH+ +R  E   +  G  VG+Y
Sbjct:   294 MLTHGNV---VAGVCSVILQMGDHRIRAGDVMVSFLPLAHMFERCCENGMYYVGGCVGFY 350

Query:   249 HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 308
              GD+  L +DL  LKPT++  VPR+  ++++ I+  +     L+R +F+   + K   + 
Sbjct:   351 SGDIKELTNDLKMLKPTVMPAVPRLLNRVYDKIQNDISA-SGLKRGLFNMAMRAKEKEIA 409

Query:   309 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 368
              G  +R      D L F+KV    GG LRL++ G APL+  V  F+R      +++GYG 
Sbjct:   410 RGVLRRNGC--WDKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQ 467

Query:   369 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 428
             TE  G  T+    +        PVS  + ++L +VPEM Y    +   GEVCVRG  +F 
Sbjct:   468 TECTGAITLTVQGDHVPNHVGPPVSC-NAVKLVDVPEMEY--FANQNTGEVCVRGSNVFH 524

Query:   429 GYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 487
             GYYK+P+ T E+I  +GW HTGD+G  LPNG ++IIDR+K++ K+SQGEY+  E +EN+Y
Sbjct:   525 GYYKDPEKTAEAIDSEGWHHTGDVGMWLPNGTLRIIDRRKHIFKLSQGEYIVPEKIENIY 584

Query:   488 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 547
              ++  +  ++VYG+SLKS ++AVVVP  +  K+WA  N   G+   LC+   ++  I+++
Sbjct:   585 TLSQYVNQVYVYGESLKSCIIAVVVPDTDVLKQWATENNVRGTLSVLCNNKNVKELIMND 644

Query:   548 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 606
             + N  +++ L+ FE +K + L P PF ++  L+T T K KR +L  Y++ +++ +Y+ L
Sbjct:   645 MLNWGKQSGLKSFEQVKDIYLHPDPFSVQNGLLTPTFKAKRPQLKSYFKPQLEDMYKHL 703

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 233/610 (38%), Positives = 348/610 (57%)

Query:     3 VQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
             + K   +  LG R  + DGK G Y W +YK+       I SAL   G   G R+GI+  N
Sbjct:    62 INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSIN 121

Query:    62 CPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
              P+WV + M A N  SL+ V LY TLG  A+ ++++H+EI  +  + K V+++LS     
Sbjct:   122 RPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS---MP 177

Query:   121 AQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT 179
                ++ +V +  L  A   +      +K Y   +F  LG+ N  +   P P ++CT++YT
Sbjct:   178 GTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPEDLCTLLYT 237

Query:   180 SGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLSFLPLAHILDRVIEEYF 238
             SG++G+PKGV+LTH  + + V+G +     F     + +DV++S+LPLAH  +R +    
Sbjct:   238 SGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMSYLPLAHSFERAVVSLM 292

Query:   239 FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 298
                G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   +     L++ +F+ 
Sbjct:   293 CYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNW 352

Query:   299 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC 358
                 K + + +G      +P+ D L F K K RLGGR++ ++SG APL  ++ EFLR   
Sbjct:   353 GLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACF 408

Query:   359 CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCG 417
             C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VPEM Y   D P P G
Sbjct:   409 CCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRG 467

Query:   418 EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 476
             EVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + IIDRKKN+ K+SQGE
Sbjct:   468 EVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDRKKNIFKLSQGE 527

Query:   477 YVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK-WA--YSNGHAGSFLE 533
             YVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K +A  Y      +   
Sbjct:   528 YVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKYPELDVSNHAT 587

Query:   534 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 593
             L    +L   ILS     A   KL GFE +K + ++  PF  E +L+T + K KR +L  
Sbjct:   588 LAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPSFKPKRPQLKE 647

Query:   594 YYQVEIDQLY 603
              YQ  ID LY
Sbjct:   648 RYQTIIDTLY 657

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88813	ACSL5_RAT	6, ., 2, ., 1, ., 3	0.3554	0.9410	0.8418	yes	no
Q8JZR0	ACSL5_MOUSE	6, ., 2, ., 1, ., 3	0.3503	0.9410	0.8418	yes	no
Q9P7D7	LCF2_SCHPO	6, ., 2, ., 1, ., 3	0.3139	0.9443	0.8374	yes	no
O22898	LACS1_ARATH	6, ., 2, ., 1, ., 3	0.6914	0.9918	0.9181	yes	no
P30624	LCF1_YEAST	6, ., 2, ., 1, ., 3	0.3055	0.9590	0.8371	yes	no
Q1ZXQ4	FCSB_DICDI	6, ., 2, ., 1, ., 3	0.3601	0.9787	0.8885	yes	no
Q9ULC5	ACSL5_HUMAN	6, ., 2, ., 1, ., 3	0.3677	0.9378	0.8389	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.976
3rd Layer	6.2.1.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028146001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (669 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018681001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa)						•			0.900
	GSVIVG00038876001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)						•			0.899
	GSVIVG00033040001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa)						•			0.899
	GSVIVG00009919001	SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa)						•			0.899
	GSVIVG00009515001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00025319001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)						•			0.800
	GSVIVG00019100001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa)						•			0.800
	GSVIVG00009528001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	611
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.0
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-154
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-120
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-114
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-104
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-88
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-86
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-77
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-75
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-55
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-55
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-53
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-47
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-44
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	4e-44
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	8e-44
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-41
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	6e-40
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	7e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-37
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-37
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-35
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-32
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-32
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	9e-32
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-31
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	4e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-31
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-27
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-26
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-26
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	6e-26
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	6e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-24
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	8e-24
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-23
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	4e-22
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	6e-22
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-21
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-21
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	8e-21
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	9e-21
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-20
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-19
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-19
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-18
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-18
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	4e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-18
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-18
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	7e-18
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-17
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-17
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-17
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-17
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-17
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-17
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-17
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	3e-17
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-16
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-16
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	2e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-16
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	4e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	7e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	7e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-15
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	7e-15
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	7e-15
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-15
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	5e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	7e-14
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-13
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	4e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	4e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	6e-12
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	8e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-11
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-11
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-11
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	7e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-10
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-10
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	3e-10
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	5e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	8e-10
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	1e-09
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	6e-09
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	8e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	8e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	9e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	5e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-08
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	6e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	9e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	2e-07
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	4e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	1e-06
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-06
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	3e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	4e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	5e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	5e-06
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	6e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	6e-06
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-06
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	2e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	6e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	6e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	9e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	9e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	9e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-04
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	3e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	4e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	4e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	5e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.001
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.001
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.001
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.001
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.002
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.002
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.003
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.003
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.003
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	0.004
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.004
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	0.004
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	0.004

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 1216 bits (3147), Expect = 0.0
 Identities = 479/609 (78%), Positives = 541/609 (88%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           SV+KYP N+MLGWR  VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+N
Sbjct: 51  SVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSN 110

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
           CPQW+ AMEAC A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA
Sbjct: 111 CPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSA 170

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
           +RL+ +V FTS+T E+ + A Q G+K YSW +FLH+GK N  E  PP+P +ICTIMYTSG
Sbjct: 171 KRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSG 230

Query: 182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
           TSGDPKGVVLTHE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+
Sbjct: 231 TSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRK 290

Query: 242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
           GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK
Sbjct: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYK 350

Query: 302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
           YKLAWMN GY  ++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF
Sbjct: 351 YKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAF 410

Query: 362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 421
           +VQGYGLTET GPTT+ FPDEMCM+GT G  +VY+ELRLEEVPEMGY PL +PP GE+CV
Sbjct: 411 VVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICV 470

Query: 422 RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 481
           RGK LFSGYYKNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE
Sbjct: 471 RGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALE 530

Query: 482 YLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ 541
           YLENVY   PI+EDIWVYGDS KSMLVAVVVP EE+T KWA  NG  GSF ELCSL +L+
Sbjct: 531 YLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELK 590

Query: 542 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 601
            +ILSELK+ AE+NKLRGFE+IKGVIL+ +PFD+ERDLVTATLKK+RN LL YYQVEID+
Sbjct: 591 EHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDE 650

Query: 602 LYEKLAPGR 610
           +Y KLA  R
Sbjct: 651 MYRKLAEKR 659

Length = 660

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  738 bits (1908), Expect = 0.0
 Identities = 275/583 (47%), Positives = 365/583 (62%), Gaps = 46/583 (7%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
           GPY W +YKEV E  L I S LRA G +PG ++GI+  N P+W+   +AC + SL+ VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 83  YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 142
           YDTLG  A+ +IL+  EI  VF    KV                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 143 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 202
                 YS++E   LGK N++   PP+P ++ TIMYTSGT+G+PKGV+LTH  I   V+G
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 203 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 262
           ++  + +F   +   DVY+S+LPLAHI +RV+E      G  +GYY GD   L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 263 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 322
           KPT+  GVPRV ++I++GI   +     L+R +F+  Y YKLA +  G     ASPL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 323 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 382
           L F+K+KA LGGR+RL++SGGAPLS + +EFLRV     ++QGYGLTETC   T+  P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 383 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 441
               G  GP     E++L +VPEMGY   DDPP GE+C+RG  +F GYYKNP+ T E+  
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 442 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 501
            DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y  +P+++ I VYGD
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGD 436

Query: 502 SLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKLRGF 560
           SLKS LVA+VVP E+  +KWA  NG   G F ELC+  +L+  IL +L    + N L+GF
Sbjct: 437 SLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGF 496

Query: 561 EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 603
           E +K + L P PF  E  L+T T K KR +L   Y+ EID++Y
Sbjct: 497 EIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  729 bits (1884), Expect = 0.0
 Identities = 316/604 (52%), Positives = 412/604 (68%), Gaps = 5/604 (0%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           +V+KYP N+MLG R   D K GPYVW TYKEVY+  ++I SA+R+ G  PG R GIYG+N
Sbjct: 52  AVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSN 111

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCR 119
           CP+W+ AMEACN+  +  VPLYDTLG  AV FI++HAE+   FVQ+ K+  +LS  P C 
Sbjct: 112 CPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCS 171

Query: 120 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT 179
           S   L+ +V F  +++EQKE A + G+  +SW+EF  +G ++  E+ P Q  +ICTIMYT
Sbjct: 172 S--NLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYT 228

Query: 180 SGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 239
           SGT+G+PKGV+LT+  I   V   D  L   +   T +D Y S+LPLAH+ D+VIE Y  
Sbjct: 229 SGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCI 288

Query: 240 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 299
            +GAS+G++ GD+  L +D+  LKPT+  GVPRV+++I+ GI + +     LR+++FD  
Sbjct: 289 SKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFA 348

Query: 300 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC 359
           Y YKL  +  G KQ EASP  D L F K+K  LGGR+RL++SG APL   VEEFLRVT C
Sbjct: 349 YNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSC 408

Query: 360 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 419
           + L QGYGLTE+CG       +   MVGT G      E RLE VPEMGY  L D P GE+
Sbjct: 409 SVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEI 468

Query: 420 CVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
           C+RG TLFSGY+K  DLT E +IDGWFHTGDIG+  PNG +KIIDRKKN+ K+SQGEYVA
Sbjct: 469 CLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVA 528

Query: 480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 539
           +E LEN Y   P+I  IWVYG+S +S LVAVVVP  +  + WA +N   G F  LC  ++
Sbjct: 529 VENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLK 588

Query: 540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 599
            + YIL EL +  ++ +LRGFE +K + L+P PFD+ERDL+T T K KR +LL YY+  I
Sbjct: 589 ARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCI 648

Query: 600 DQLY 603
           DQLY
Sbjct: 649 DQLY 652

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  689 bits (1778), Expect = 0.0
 Identities = 314/613 (51%), Positives = 427/613 (69%), Gaps = 4/613 (0%)

Query: 1   MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 60
           MSV+KYP N MLG R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGA
Sbjct: 53  MSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGA 112

Query: 61  NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
           N P+W+ +MEACNA  L CVPLYDTLG GAV FI+ H+E+  VFV++KK+ EL      S
Sbjct: 113 NSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNS 172

Query: 121 AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
            + ++ +V F  ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTS
Sbjct: 173 TEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTS 232

Query: 181 GTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR 240
           GT+GDPKGV++++E+I T ++GV   L      +TV DVYLS+LPLAHI DRVIEE F +
Sbjct: 233 GTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQ 292

Query: 241 RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
            GA++G++ GD+  L +DL ELKPT+   VPRV ++++ G++K L +   L++ +FD+ +
Sbjct: 293 HGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAF 352

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
            YK   M  G    EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C 
Sbjct: 353 SYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACC 412

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
            ++QGYGLTE+C  T V  PDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C
Sbjct: 413 HVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEIC 472

Query: 421 VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL 480
           +RGKTLFSGYYK  DLT+E +IDGW HTGD+G+  PNG +KIIDRKKN+ K+SQGEYVA+
Sbjct: 473 IRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAV 532

Query: 481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 540
           E +EN+Y     ++ +WVYG+S +S LVA+  P ++  ++WA  NG +G +  LC   + 
Sbjct: 533 ENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKA 592

Query: 541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 600
           + +IL EL   A+  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID
Sbjct: 593 KEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVID 652

Query: 601 QLY----EKLAPG 609
           ++Y    EKLA  
Sbjct: 653 EMYKTTNEKLASR 665

Length = 666

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  536 bits (1382), Expect = 0.0
 Identities = 250/612 (40%), Positives = 352/612 (57%), Gaps = 19/612 (3%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           +V+ +   + LG R  VDG  G Y W TY E       I S L   G   G  VG+Y  N
Sbjct: 53  AVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFIN 112

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCR 119
            P+W+    AC+A S + VPLYDTLGP AV FI++HAE+  +F   + +  LLS   +  
Sbjct: 113 RPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIP 172

Query: 120 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT 179
           S   +R++V           +   TG++  ++ + L  G+ +     PP+P ++ TI YT
Sbjct: 173 S---VRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYT 229

Query: 180 SGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 239
           SGT+G PKGVVLTH  +   V+G  L    +       DV++S+LPLAHI +RV +    
Sbjct: 230 SGTTGTPKGVVLTHGNLIANVAGSSLSTKFY-----PSDVHISYLPLAHIYERVNQIVML 284

Query: 240 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 299
             G +VG+Y GD   L DDL  L+PT+   VPR++ +I++GI  A++E   L+ R+F+A 
Sbjct: 285 HYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAA 344

Query: 300 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC 359
           Y  K   +  G   +  SP+ D L F K+KA+LGGR+R + SG +PLS +V EFLR+   
Sbjct: 345 YNAKKQALENG---KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG 401

Query: 360 AFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCG 417
             +++GYG+TET C  + +   D +   G  G  +   E++L +VPEM Y+  D P P G
Sbjct: 402 GRVLEGYGMTETSCVISGMDEGDNLS--GHVGSPNPACEVKLVDVPEMNYTSEDQPYPRG 459

Query: 418 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 476
           E+CVRG  +F GYYK+   TRE I  DGW HTGDIG  LP G +KIIDRKKN+ K++QGE
Sbjct: 460 EICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGE 519

Query: 477 YVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELC 535
           Y+A E +ENVY     +   +VYGDSL S LVAVVV   E  K WA S G       +LC
Sbjct: 520 YIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLC 579

Query: 536 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 595
           +  +++  +L+++       +LRGFE  K V L P PF +E  L+T T K KR +   Y+
Sbjct: 580 NDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYF 639

Query: 596 QVEIDQLYEKLA 607
              I  +Y +LA
Sbjct: 640 AKAISDMYAELA 651

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  457 bits (1179), Expect = e-154
 Identities = 214/599 (35%), Positives = 316/599 (52%), Gaps = 46/599 (7%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
           G +   TY+E+YE V  + S L + G   G RV I+ AN P+W  A  A  AL  + VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 83  YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 138
           Y T  P  + +IL+ +E   +FV++      V  +L  DC     L V++       E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159

Query: 139 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 194
            +     +     DE + L  ++       I PP+P ++ TI+YTSGT+G PKGV+LTH 
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 195 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 253
            +   V+G+D  L          D  LSFLPLAHI +R  E       G +V +   D  
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269

Query: 254 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 310
            L +DL E++PT++ GVPRV+EK+++GI + + +   +RR++F    K     ++    G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329

Query: 311 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 369
                   +AD L FRK++  LGGR+R  +SGGAPLS E+  F R +     +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387

Query: 370 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 429
           ET    +V  PD   ++GT G      E+++ +              GE+ VRG  +  G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433

Query: 430 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 488
           YYKNP+ T E+   DGWF TGD+G++  +G + I  RKK LIK+S G+ +A E +E+   
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493

Query: 489 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA--GSFLELCSLVQLQNYILS 546
            +P+IE I V GD  K  LVA++VP  +  +KWA S       S  EL    +L   IL 
Sbjct: 494 KSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILP 552

Query: 547 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 605
            +       +L GFE IK  +L P+ F  E   +T TLK KR+ +L  Y+ EI+ +Y +
Sbjct: 553 RVNKGN--KRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSR 609

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  363 bits (933), Expect = e-120
 Identities = 178/575 (30%), Positives = 263/575 (45%), Gaps = 125/575 (21%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
           G +   T+ E+ E V ++ + L A G +PG RV I   N P+WV A  A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 83  YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 142
           Y T  P  V +IL+ +    VFV+DK       PD      L  ++ +TS T        
Sbjct: 61  YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99

Query: 143 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 202
            TG                                       +PKGV+LTH  +    + 
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119

Query: 203 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 261
           +   +      ++  D  LSFLPLAH+ ++ + EY     GA V  +      L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173

Query: 262 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 321
           ++PT+   VPRV+EKI+ GI+  +    PL+R++F                         
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210

Query: 322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 378
                   A  GGRLR  +SGGAPL  EV EF R   +     +++GYGLTET G  TV 
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258

Query: 379 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 438
            P ++ + GT G      E+R+ E              GE+ VRG  +  GYYKNP+ T 
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304

Query: 439 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 497
           E++  DGW HTGDIG++  +G + I DRKK+LI  + G+ +A + +EN    +P I    
Sbjct: 305 EALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAV 364

Query: 498 VYGDSLKSMLVAVVVPCEEDTKKWAYSNG-HAGSFLELCSLVQLQNYILSELKNAAERNK 556
           V GD     L A++V   E  +KWA  +G    ++ +L    +++  I  E+   A    
Sbjct: 365 VVGDDRPY-LTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEV-EEANARL 422

Query: 557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 591
            R  E IK  +L P+ F +E   +T T+K +R  +
Sbjct: 423 AR-VEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  355 bits (913), Expect = e-114
 Identities = 222/646 (34%), Positives = 332/646 (51%), Gaps = 57/646 (8%)

Query: 1   MSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTYKEVYEEVLQIVSALRA 46
            S +KY   R+LG R  +        DG+       G Y W TY +V+E V    S L A
Sbjct: 66  QSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA 125

Query: 47  SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 106
            G     RV I+     +W+ A++ C   ++  V +Y +LG  A+   L+  E+  V   
Sbjct: 126 LGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICD 185

Query: 107 DKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPYSWDEFLHLGKVNEMEI 165
            K++K+L+    +     RV +       +       +      S+ E   LGK N ++ 
Sbjct: 186 SKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDP 244

Query: 166 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDV 219
             P P +I  IMYTSG++G PKGV++TH  I   V+GV          MTV      +DV
Sbjct: 245 DLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV----------MTVVPKLGKNDV 294

Query: 220 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD-----------DLMELKPTLLA 268
           YL++LPLAHIL+   E      GA++GY  G    L D           D   LKPTL+ 
Sbjct: 295 YLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIKKGTKGDASALKPTLMT 352

Query: 269 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---MGYKQREASPLADLLAF 325
            VP + +++ +G++K ++    L +++FD  YK +LA +     G    E   L D L F
Sbjct: 353 AVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKL-LWDALVF 411

Query: 326 RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 385
           +K++A LGGR+R ++SGGAPLS + + F+ +   A + QGYGLTETC   T    D+   
Sbjct: 412 KKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTS- 470

Query: 386 VGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-ID 443
           VG  GP      ++L    E GY   D P P GE+ + G ++  GY+KN + T E   +D
Sbjct: 471 VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVD 530

Query: 444 G----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 499
                WF+TGDIGQ  P+G ++IIDRKK+++K+  GEYV+L  +E    V+P +++I V+
Sbjct: 531 ERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVH 590

Query: 500 GDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKLR 558
            D   S  VA+VVP ++  +KWA   G    +F ELC   +    +   L  AA+  +L 
Sbjct: 591 ADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLE 650

Query: 559 GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE 604
            FE    + L P P+  E  LVTA LK KR ++   ++ ++ +LYE
Sbjct: 651 KFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE 696

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  331 bits (850), Expect = e-104
 Identities = 183/602 (30%), Positives = 281/602 (46%), Gaps = 50/602 (8%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E++E ++     L   G   G  V IY     +W+ ++    + S++   +Y  LG 
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 141
            A+ + L   E   +    K V  LL        P+         ++   SL A      
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235

Query: 142 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 198
            +      +W + +  G           P N   +  IMYTSGT+GDPKGV+ TH ++  
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291

Query: 199 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 257
            +  ++  L+        D+ Y S+LPLAHI++  +   F  RGA +G+  G    L D 
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349

Query: 258 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 307
                 DL E +P  L GVPR+F+     IKKA+E   P    L+RR+FD  Y+ +L  +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405

Query: 308 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 367
             G      +P  +   F   +A LGGR+R ++SGG PLS   +EF+ V     ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460

Query: 368 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 426
           LTET     +    ++      G +    E++L +  E  Y   D P P GE+ +RG  L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517

Query: 427 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 485
           F GYYK  +LTRE +  DGWFHTGD+G I  NG ++II R K L K   GEY+ALE LE 
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577

Query: 486 VYCVAPII--EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 543
           +Y    ++    + V     +S + A+V+  E     +A  +G  G +  +    + Q  
Sbjct: 578 LYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKK 637

Query: 544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 603
               L+  A     + FE ++ V +    +  E  ++TA +K KR  +   Y   I +L+
Sbjct: 638 ATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELF 697

Query: 604 EK 605
             
Sbjct: 698 AD 699

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  278 bits (714), Expect = 6e-88
 Identities = 125/478 (26%), Positives = 194/478 (40%), Gaps = 74/478 (15%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY+E+ E   ++ +ALRA G  PG RV I   N P+WV A+ A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + +IL+ +E   +   D+ + +LL    +    L +++                G   
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
              D+ L  G   E    P  P ++  I+YTSGT+G PKGV+LTH  +    +G+     
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 265
                +T  D  L  LPL               G ++        D   L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223

Query: 266 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 325
           +L GVP +   + +  ++   +L                                     
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247

Query: 326 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 384
                     LRLV+SGG PL  E+            LV GYG TET    T   P +  
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298

Query: 385 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 442
           +  G+ G       + ++ + E G  P+     GE+C+RG  +  GY  +P+LT E  + 
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355

Query: 443 DGWF--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 498
           DGW    TGD+G+   +G ++I+ RK + +KI  GE +    +E V    P + +  V
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  278 bits (714), Expect = 1e-86
 Identities = 170/592 (28%), Positives = 263/592 (44%), Gaps = 111/592 (18%)

Query: 19  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 78
            G++  Y   T+ +V ++  +I +AL++ G EPG R+ I   NC +W+ A  A      +
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 79  CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 132
            VPLY TL    + ++L+H++   +FV        +K  +              +     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 133 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 190
                           Y WD+ L      E     P P   ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156

Query: 191 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 249
           L+    A    G    +      +T +D  LS+LPLAHI +RVI E      GA V ++ 
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210

Query: 250 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 304
             L+    DL   +PT+   VPR++ K  +GI      + L  L  L+  I  +L K   
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265

Query: 305 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 360
                                +K+   LG  + RL  SG AP+   +  + R   +    
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301

Query: 361 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 420
            + +GYG+TE    +T+ +P +   +GT G      EL++ E              GE+ 
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346

Query: 421 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
           +R   L SGYYK+P+ T E+   DGW HTGD G+I  +G +KI  R K L K S+G+YVA
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406

Query: 480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 539
              +EN+    P +E + V G  L    VA+VV  E        ++      +E  SL Q
Sbjct: 407 PAPIENLLSANPHVEQVCVVGSGLPQP-VALVVLSEA-------ADPLEREEVE-ESLQQ 457

Query: 540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 591
               + SEL++          E +  +++    + +E  L+T TLK KRN +
Sbjct: 458 TLAKVNSELES---------HERLSALVVVKEAWTVENGLLTPTLKIKRNVV 500

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  254 bits (651), Expect = 2e-77
 Identities = 136/497 (27%), Positives = 204/497 (41%), Gaps = 76/497 (15%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY+E+     ++ +AL+A G +PG RV I   N P+++ A  A      + VPL   L P
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 89  GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 146
             + +IL+ A    +        + E ++        + ++                   
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146

Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 206
            P + +     G   + +  P  P ++  ++YTSGT+G PKGVVLTH  +   ++     
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203

Query: 207 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
                  +T DDV LS+LPL HI            G  VG     L A           L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237

Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 322
           L G   V           L         +   + KYK+  +        +      L D 
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281

Query: 323 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 381
                    L   LRLV+SGGAPL  E+ E F        +++GYGLTET    T+  PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339

Query: 382 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 440
           ++    G+ G      E+R+  V   G   L     GE+ VRG  +  GY+  P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396

Query: 441 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 499
              DGW  TGD+G +  +G + I+ R K+LI    GE +  E +E V    P + +  V 
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVV 455

Query: 500 G---DSLKSMLVAVVVP 513
           G   +     +VAVVV 
Sbjct: 456 GVPDERWGERVVAVVVL 472

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  251 bits (642), Expect = 3e-75
 Identities = 178/621 (28%), Positives = 272/621 (43%), Gaps = 82/621 (13%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 87
           TYK+ YE   Q   A    G E    VGI G N P+W   A+ A  A   I V +Y T  
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68

Query: 88  PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
           P A  ++ + +E + + V + K  + +         L+ ++ +     ++KE        
Sbjct: 69  PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121

Query: 148 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 202
            YSW EF+ LG+         I+  Q P   CT++YTSGT+G PKGV+L+H+ I      
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181

Query: 203 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 260
               +D         +  +S+LPL+HI  ++++ +      SVG   Y    +AL+  L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235

Query: 261 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 312
               E++PT   GVPRV+EKI E +K    +   L+R+I         +  L  M     
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295

Query: 313 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 365
                 LA  L F+KV+  LG  R +   +G AP+S E  EF       FL      ++ 
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348

Query: 366 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 425
           YG++ET GP TV  P     + + G      E ++      G         GE+C+ G+ 
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399

Query: 426 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 484
           +F GY    + T E+I  DGW H+GD+G +  +G + I  R K LI  + GE V    +E
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIE 459

Query: 485 N-VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL-----ELCSLV 538
             V    PII +  + GD  K + + + + CE D +      G     L     E C L+
Sbjct: 460 EAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPE-----TGEPLDNLTEEAIEFCRLL 514

Query: 539 QLQNYILSEL----------------KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA 582
                 +SE+                K   +       +  K VIL  + F +    +  
Sbjct: 515 GSHATTVSEILAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWVIL-EKDFSVPGGELGP 573

Query: 583 TLKKKRNKLLIYYQVEIDQLY 603
           T+K KR  +   Y+ EID+LY
Sbjct: 574 TMKLKRPVVAKKYKDEIDKLY 594

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  195 bits (497), Expect = 1e-55
 Identities = 120/457 (26%), Positives = 175/457 (38%), Gaps = 116/457 (25%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E   +  + L+  G + G RV +   NCPQ+  A         + VP       
Sbjct: 26  TYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVP------- 78

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             VN +    E++     D   K              V++   S        A+ +G   
Sbjct: 79  --VNPLYTPRELEHQL-NDSGAK--------------VLIVAISFED-----ALASGAPL 116

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
                            +   P ++  + YT GT+G PKG +LTH  +   V+ V     
Sbjct: 117 P--------------LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNL---VANVQQIAA 159

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNAL----RD-DLMEL- 262
             +D    +D +L+ LPL HI       +       +G   G  N L    R  ++++  
Sbjct: 160 WVKDLREGEDRFLTALPLFHI-------FGLTVNMLLGLRLGATNVLVPNFRPINVLKEI 212

Query: 263 ---KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL 319
              + T+  GVP                           LY                   
Sbjct: 213 KRYRFTIFPGVP--------------------------TLYNA----------------- 229

Query: 320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 378
             LL   + K      LRL ISGGAPL  EV E F   T    LV+GYGLTET   TTV 
Sbjct: 230 --LLNHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKTGAP-LVEGYGLTETSPVTTVN 286

Query: 379 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
             D     G+ G P+     ++  +E  E+   P  +   GE+ VRG  +  GY+  P+ 
Sbjct: 287 PLDGERKPGSIGLPLPGTEVKIVDDEGNEL---PPGEV--GELVVRGPQVMKGYWNRPEE 341

Query: 437 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           T E + DGW  TGDIG +  +G   I+DRKK++I + 
Sbjct: 342 TAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVG 378

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  196 bits (500), Expect = 1e-55
 Identities = 138/524 (26%), Positives = 200/524 (38%), Gaps = 119/524 (22%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E V ++ +ALRA G + G RV ++  N  +++EA  A   +  +  P+   L P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + +IL+ AE   V V  + V  L      +A   ++    T +       A     + 
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145

Query: 149 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 205
             ++E L        +       +      ++YTSGT+G PKGVVL+H            
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198

Query: 206 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 252
                  K++ DDVYL  +P+ H+             A  + Y     G         D 
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244

Query: 253 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 312
             L D +   + T    VP +                                   M  K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271

Query: 313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 371
              A    D              LRLVI GGA L    + EF         VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318

Query: 372 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 418
               +V  P++            G   P  V  E R+     +E+P  G         GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369

Query: 419 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 478
           + VRG  L  GY+  P+ T E+I  GW HTGD+G I  +G + I DR K++I IS GE +
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENI 428

Query: 479 -ALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 518
              E LE+     P + ++ V G   +      VAVVV     T
Sbjct: 429 YPRE-LEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT 471

Length = 521

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  194 bits (496), Expect = 1e-53
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 16/368 (4%)

Query: 138 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 197
           KE A + GI    +D+     K    +I    P  I +I+YTSGTSG PKGV+L+++ + 
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330

Query: 198 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 257
             V  V L       K      +LS+LP++HI +RVI    F  G ++  +  D+N    
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 258 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317
           D+   K  +LAGVP+VF +I+  I   +  L PL+R +   +   + +  N G+ +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444

Query: 318 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 376
            L  +     K+K ++   L ++++GG  LS ++ E L V       QGYGLTET GP  
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 377 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 434
           V   D+       GP+S     ++R  E     Y   D  P GE+ ++  ++FSGY+   
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 435 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 493
           + T+ +   DG+F TGDI QI  NG +  +DR K L+K+SQGEY+  + L N+Y     I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619

Query: 494 EDIWVYGD 501
               VYGD
Sbjct: 620 NFCVVYGD 627

Length = 746

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  173 bits (441), Expect = 1e-47
 Identities = 128/516 (24%), Positives = 203/516 (39%), Gaps = 93/516 (18%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ ++ ++ L++   LR  G + G  V +   N  ++      C A   I      +  P
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             +   L  ++   +F  D    + +    +    +  ++   S        A    ++ 
Sbjct: 72  DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122

Query: 149 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 204
               E        E E  P    +       ++Y+SGT+G PKGV+L+H+ I   ++ + 
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176

Query: 205 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 263
              D    +  + +DV L+FLP  H                +                  
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210

Query: 264 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 318
            +LL G   +                    +     +     KYK+  + +        P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246

Query: 319 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 375
           +A  LA   +  K  L   LR++ SG APLS E++E LR       + QGYG+TET   T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305

Query: 376 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 435
           T+  P +    G+ G +    E ++  V E G   L     GE+CV+G  +  GY  NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362

Query: 436 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 494
            T+E+I  DGW HTGDIG    +G   I+DRKK LIK  +G  V    LE V    P + 
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421

Query: 495 DIWVYG--DSLKSML-VAVVVP------CEEDTKKW 521
           D  V G  D +   L  A VV        E++ K +
Sbjct: 422 DAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDY 457

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  164 bits (417), Expect = 1e-44
 Identities = 131/498 (26%), Positives = 197/498 (39%), Gaps = 126/498 (25%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ +   ++ +AL   G  PG  V     N  ++V    AC  +  +  P+      
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + FIL  A                        R RV+                    P
Sbjct: 63  RELGFILRQA------------------------RARVLFV------------------P 80

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 207
             +  F +             P ++  ++YTSGT+G+PKGV+ TH T+ A   S V+   
Sbjct: 81  DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129

Query: 208 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 267
                 +T DDV L   PLAHI                G+ +G         +EL   LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158

Query: 268 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 326
            G   V            +   P   R  + + ++ + +  MG     A+P LADLLA  
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200

Query: 327 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 383
                    LR+ + GGAP+  E             +V+ YG+TE     TV  PD  + 
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258

Query: 384 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 438
               T G      E+R+      +VP     P ++   GE+ VRG  LF GY   PD T 
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310

Query: 439 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 498
               DGWF TGD+G++  +G ++I  RKK++I I  GE ++   +E++    P + ++ V
Sbjct: 311 AFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAV 369

Query: 499 YG---DSLKSMLVAVVVP 513
                + L   + AVVVP
Sbjct: 370 VAMPDERLGERVCAVVVP 387

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  160 bits (406), Expect = 4e-44
 Identities = 105/355 (29%), Positives = 150/355 (42%), Gaps = 63/355 (17%)

Query: 172 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 231
           +   I+YTSGT+G PKGVVL+H      ++             T  DV LS LPL H++ 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55

Query: 232 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
                      G +V  Y G    L   + + + + T+L GVP +++ +           
Sbjct: 56  GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------A 105

Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
           +    R       Y L+                              LRL+ISGG PLS 
Sbjct: 106 KAAEDR------GYDLS-----------------------------SLRLLISGGEPLSP 130

Query: 349 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 407
           E+ E F        +++GYGLTET   T+     E+   GT G      E+R+  V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187

Query: 408 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 466
             PL     GE+ VRG  +  GY+ NP  T  +   DGW+ TGD+G +   G + I  R 
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246

Query: 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKS-MLVAVVVPCEEDT 518
           K+LIK+  GE V    +E+V    P + +  V G  D  +   +VA VV      
Sbjct: 247 KDLIKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGAD 300

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  163 bits (415), Expect = 8e-44
 Identities = 119/462 (25%), Positives = 179/462 (38%), Gaps = 95/462 (20%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+   V +  +AL A G   G RV I+  N P WV A         + VPL      
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
               +IL   +   +FV        L  D  +  RL  +        E+         K 
Sbjct: 92  DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
            ++ +FL  G   E       P ++  I++TSGT+G PKG +LTH  + +  +    +L 
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 259
                +T  D YL+  P  H+        F           RGA++       +   D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247

Query: 260 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 315
             L    + T+L G P                           +Y   L      +  R 
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276

Query: 316 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 371
           A  L+ L              RL ++G A     L    E  L V     ++ GYGL+E 
Sbjct: 277 AEDLSSL--------------RLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319

Query: 372 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 429
            G TT    D+    + GT G      E ++  V E+G   +     GE+ VRG  +  G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376

Query: 430 YYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 470
           YY +P+ T  +I  DGW HTGD+G++   G + I+DRKK++ 
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  156 bits (397), Expect = 3e-41
 Identities = 121/497 (24%), Positives = 190/497 (38%), Gaps = 114/497 (22%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
           G     TY + Y  V ++ +AL + G +PG RV     N  + +E   A   +  +   L
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80

Query: 83  YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 142
              L P  + +I++HAE   +FV D     LL      A RL  +           +M  
Sbjct: 81  NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134

Query: 143 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 199
            +    Y+++E L   + +     P    N    + YTSGT+G+PKGVV +H ++   T 
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192

Query: 200 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 248
            S +   L      ++  D  L  +P+ H+               + Y            
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236

Query: 249 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 306
             + D  +L D + E K T+ AGVP +                                W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264

Query: 307 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 364
           + +            L         L    R+V+ G A   + +E+     V     ++ 
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308

Query: 365 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 408
            +G+TET    TV       +V              G      ELR+      E+P  G 
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367

Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 468
           +       GE+ VRG  +   YYK+P+ T E   DGWF TGD+  I  +G ++I DR K+
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKD 421

Query: 469 LIKISQGEYVALEYLEN 485
           +IK S GE+++   LEN
Sbjct: 422 VIK-SGGEWISSVELEN 437

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  150 bits (381), Expect = 6e-40
 Identities = 99/367 (26%), Positives = 139/367 (37%), Gaps = 84/367 (22%)

Query: 163 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 222
           +  L P      TI++TSG++G PK VV T         G    L      +T DD +L 
Sbjct: 69  LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123

Query: 223 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 277
            LPL H     I+ R         GA V     D  A+ + L     T ++ VP      
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173

Query: 278 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 337
                          +R+ +                  A  L+               LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192

Query: 338 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 393
            V+ GGAP+       L          L   YG+TET     T+   D +  +G+ G   
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248

Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 453
              ELR+    +           GE+ VRG +LF GY     LT     DGWFHTGD+G 
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGY 297

Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 510
           +   G + ++ R+ +LI IS GE +  E +E V    P +E+  V G   D      VA 
Sbjct: 298 LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAF 356

Query: 511 VVPCEED 517
           VVP ++ 
Sbjct: 357 VVPNDDP 363

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  152 bits (386), Expect = 7e-40
 Identities = 102/364 (28%), Positives = 155/364 (42%), Gaps = 81/364 (22%)

Query: 167 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 222
           PP       ++  + Y+SGT+G  KGV+LTH      ++ V   +         +DV L 
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206

Query: 223 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 282
            LP+ HI                   +G L  +   L+ L  T++  +PR F+       
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237

Query: 283 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 337
             LE+          A+ KYK+  +          P+   +    VK  +  +     L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278

Query: 338 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 395
            + SG APL  E+ E F        L QGYG+TE+   TT+C   E     G+ G +   
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338

Query: 396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQI 454
            E ++ + PE G   L     GE+ VRG  +  GY  NP+ T E+I  DGW HTGD+G  
Sbjct: 339 VEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYF 396

Query: 455 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IEDIWVYGDSLKSMLVAVVVP 513
             +G + I+DR K LIK     Y         + VAP  +E + +   S   +  A V+P
Sbjct: 397 DEDGYLFIVDRLKELIK-----Y-------KGFQVAPAELEALLL---SHPEIADAAVIP 441

Query: 514 CEED 517
             ++
Sbjct: 442 YPDE 445

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  142 bits (361), Expect = 1e-37
 Identities = 93/375 (24%), Positives = 146/375 (38%), Gaps = 89/375 (23%)

Query: 173 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 232
              I YTSGT+G PKG +LTH  +      +          +T  D  L  +PL H+   
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-----ARRLGLTEGDRTLVPVPLFHV--- 55

Query: 233 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 281
                F            GA++       +       +   + T L GVP +F       
Sbjct: 56  -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102

Query: 282 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 340
              +  L       FD      L     G      +P+  +L+  R+++           
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142

Query: 341 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 398
                              A +  GYG+TET G  T    D+      GT G      E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184

Query: 399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 457
           ++ + P+ G  P  +   GE+CVRG ++  GYY +P+ T E+I  DGW HTGD+G +  +
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241

Query: 458 GVVKIIDRKKNLIKISQGEYVA-LEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 513
           G ++I+ R K++I I  GE +   E +E      P + +  V G   + L  ++ A VV 
Sbjct: 242 GYLRIVGRIKDMI-IRGGENIYPAE-IEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVL 299

Query: 514 ------CEEDTKKWA 522
                  EE+   + 
Sbjct: 300 KPGATLTEEELIAFC 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  143 bits (362), Expect = 3e-37
 Identities = 133/503 (26%), Positives = 185/503 (36%), Gaps = 147/503 (29%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+     ++  AL A G  PG RV +      ++V    A      + VPL  +   
Sbjct: 13  TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
                    AE+ +  + D +   L+ P          ++ +TS                
Sbjct: 73  ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
                                           GT+G PKGVVLTH  +A   +     ++
Sbjct: 98  --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 268
            +  + T  DV L  LPL H+                   HG  NAL          L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154

Query: 269 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 319
           G    F                L R  FD   +  L  +      MG    Y +     L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191

Query: 320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 378
            +   F    A     LRL +SG A L   V E +   T    L++ YG+TET G     
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249

Query: 379 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
             D     GT G P+  V  E+R+  V E G  PL     GE+ VRG  +FS Y+  P+ 
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305

Query: 437 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY--VALEYLENVYCVAPII 493
           T E+   DGWF TGD+G +  +G  +I+ RK + I I  G Y   ALE +E      P +
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGYKVSALE-IEEALLEHPGV 363

Query: 494 EDIWVYG---DSLKSMLVAVVVP 513
            ++ V G         +VAVVVP
Sbjct: 364 AEVAVIGVPDPDWGEAVVAVVVP 386

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  135 bits (343), Expect = 3e-35
 Identities = 93/331 (28%), Positives = 137/331 (41%), Gaps = 92/331 (27%)

Query: 173 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 232
              I+YTSGT+G PKGV+LTH  +          +D     ++  DVYL   PL      
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51

Query: 233 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 292
                          YH            L P L AG   V           + +  P  
Sbjct: 52  ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78

Query: 293 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 345
             + D + ++++                     L  L  F +        LRL+I G AP
Sbjct: 79  EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126

Query: 346 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 400
           +  E++  +        VQGYG+TET GPTT     E  +  +G+ G      E+R+   
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185

Query: 401 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 456
              E+P  E+G          E+ VRG  + +GY+  P+ T E++ DGW HTGD+G +  
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDE 235

Query: 457 NGVVKIIDRKKNLIKISQGEYVALEYLENVY 487
           +G + I+DRKK++I IS G        EN+Y
Sbjct: 236 DGYLYIVDRKKDMI-ISGG--------ENIY 257

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  129 bits (327), Expect = 2e-32
 Identities = 129/511 (25%), Positives = 190/511 (37%), Gaps = 132/511 (25%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E V ++   L+  G   G RV +Y  N PQ+V A  A      + VP+      
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             +  IL+ +                          RV++  + L               
Sbjct: 63  AELEHILNDSG------------------------ARVLIVGSEL--------------- 83

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 207
                       +++ ++P          YTSGT+G PKG + TH T +AT  +      
Sbjct: 84  ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121

Query: 208 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 267
                 +T D V L+FLPL H+                G     +NA           + 
Sbjct: 122 ------LTPDSVLLAFLPLFHV---------------AGMQGS-MNA----------PIY 149

Query: 268 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 326
            G   V               R  R     A+ +Y++  W N+       + + DLLA  
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191

Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
           +        L++V  GGA L   V E L+        +GYGLTET   T    PD     
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251

Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 442
               PV   ++ R+ + PE G   L     GE+ VRG  +F GY+  P+ T ES I    
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308

Query: 443 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 500
             +F TGD+G I   G    +DR K +I +S G  V    +E +    P + ++ V G  
Sbjct: 309 KRFFRTGDLGYIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCVIGRP 367

Query: 501 DSLKSMLV-AVVVP--------CEEDTKKWA 522
           D  +  +V A VV          EED  +W 
Sbjct: 368 DPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  128 bits (324), Expect = 5e-32
 Identities = 108/499 (21%), Positives = 173/499 (34%), Gaps = 128/499 (25%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T++++  E   +  AL+A G   G RV + G N  + V  + AC  L      L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
                 L+  ++  +       ++    D  S  R+            +     +T +  
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
               +                   I T+M+TSGT+G PK V  T         G    L 
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 265
                 T DD +L  LPL HI    I    FR    GA++       N L + +   + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199

Query: 266 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 325
            ++ VP                               +L  +                  
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211

Query: 326 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 380
             +        LR ++ GG+ +   + E      +     +   YG+TETC  + V    
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263

Query: 381 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 439
            EM       G      E++++   + G+        GE+ V+G  L  GY    +LT  
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315

Query: 440 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 499
               GWF+TGDIG++   G + ++ R+ +LI IS G        EN+Y     IE + +Y
Sbjct: 316 FEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGG--------ENIYPEE--IETV-LY 363

Query: 500 GDSLKSMLVAVVVPCEEDT 518
                 +  AVVVP  +  
Sbjct: 364 --QHPGIQEAVVVPKPDAE 380

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  128 bits (324), Expect = 9e-32
 Identities = 124/481 (25%), Positives = 193/481 (40%), Gaps = 92/481 (19%)

Query: 29  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
           TYK+++E V ++ + L      + G R+ I   N  +++  + A   +  I VPL   L 
Sbjct: 29  TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88

Query: 88  PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
              + F L  +    +FV+       LS    S   ++ ++  TSL   + E        
Sbjct: 89  ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144

Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
             +                    F IC   YTSGT+G PKG VLT E +  F + ++   
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180

Query: 208 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 267
           + F   +T+ D  +  LPL HI                    G +      L    PTL 
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214

Query: 268 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 323
           AG    VPR FE       KAL  +   +  +   +     A +N            +  
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261

Query: 324 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 381
             + V        R   +GGAP   E + EF+      FL  QG+G+TET  PT     +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309

Query: 382 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 439
           E     VG+ G   ++ +  L +        + +   GE+ +RG  +   Y+  PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366

Query: 440 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 499
           +I DGW  TGD+ ++  +G V I+ RKK +I IS GE +    +E V      + ++ V 
Sbjct: 367 TIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVV 425

Query: 500 G 500
           G
Sbjct: 426 G 426

Length = 496

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  128 bits (324), Expect = 2e-31
 Identities = 146/545 (26%), Positives = 219/545 (40%), Gaps = 117/545 (21%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 85
           TY E+ ++V +  + LRA G  PG RV I   NCPQ + A  A   L  + V   PLY  
Sbjct: 59  TYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTA 118

Query: 86  ---LGPGAVNFILDH-AEIDFVF----------VQDKKVKELLSPDCRSA----QRLRVM 127
                P       DH A +  V+           +   ++ ++S +  +A    QRL + 
Sbjct: 119 HELEHPFE-----DHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALR 173

Query: 128 VCFTSLTAEQKEMAVQTGIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGT 182
           +   +L   +  +   TG  P    W+  +      +   +    P P ++  I+YTSGT
Sbjct: 174 LPIPALRKARAAL---TGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGT 230

Query: 183 SGDPKGVVLTHETI-ATFVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEE 236
           +G PKG  LTH  + A    G   V    D         +  L+ LP+ H   L   +  
Sbjct: 231 TGKPKGAQLTHRNLFANAAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTL 283

Query: 237 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 296
                G  V     D++ + D + +  PT L GVP ++EKI    + A E    L     
Sbjct: 284 AVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG--- 337

Query: 297 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLR 355
                                                  +R   SG   L    VE + +
Sbjct: 338 ---------------------------------------VRNAFSGAMALPVSTVELWEK 358

Query: 356 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYS 409
           +T    LV+GYGLTET  P  V  P     +      G V V    +E+R+ + PE    
Sbjct: 359 LTG-GLLVEGYGLTET-SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDE 410

Query: 410 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 469
            + D   GE+ VRG  +F GY+  P+ T +S +DGWF TGD+  +  +G ++I+DR K L
Sbjct: 411 TMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKEL 470

Query: 470 IKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPC------EEDTKK 520
           I I+ G  V    +E V    P +ED  V G   +     +VA VV         E  + 
Sbjct: 471 I-ITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRA 529

Query: 521 WAYSN 525
           +   +
Sbjct: 530 YCREH 534

Length = 573

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  127 bits (321), Expect = 4e-31
 Identities = 106/506 (20%), Positives = 179/506 (35%), Gaps = 97/506 (19%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY ++  EV ++ +AL+  G   G RV IY  N P+ V A+ A   +  I   +   L  
Sbjct: 42  TYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSA 101

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
            AV   +       +   D            + +  + +              V      
Sbjct: 102 EAVADRIADLGPKVLIADD-----------GTFRNGKEIA-LLEDADAVLSSVVVVPRLG 149

Query: 149 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 205
             +DE +        E    +P        ++YTSGT+G PKG+V +H            
Sbjct: 150 LWYDEAVE----KASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT-- 203

Query: 206 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 265
                +      D + +      I                G ++   + L          
Sbjct: 204 AKFHGDLLP--GDRFWNSSDPGWI---------------YGLWYSVFSPL---------- 236

Query: 266 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLL 323
             +G   V    ++G      E      R+++AL KYK+            SP  L  L+
Sbjct: 237 -ASGATTVL---YDGRPFYSPE------RLWEALEKYKVT-------IFGTSPTFLRRLM 279

Query: 324 AFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 382
                +      LR++ S G PL+ E  E F       +++  YG TET        P  
Sbjct: 280 KLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP- 337

Query: 383 MCMVGTAGPVSVYSELRLEEVPEMGYSP--LDD--PPC----GEVCVRGKT--LFSGYYK 432
               G++G            +P  GY+   +DD   P     GE+ VR     +   Y+ 
Sbjct: 338 -VKNGSSG------------LPLPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWN 384

Query: 433 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 492
           +P+  +E+    W+ TGD  +   +G   +  R  ++IK+S G+ +    +E+V    P 
Sbjct: 385 DPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPA 443

Query: 493 IEDIWVYG--DSLK-SMLVAVVVPCE 515
           + +  V G  D  K  +++A VV   
Sbjct: 444 VAEAAVVGVPDPGKGQIVLAFVVLAA 469

Length = 528

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  125 bits (316), Expect = 5e-31
 Identities = 95/371 (25%), Positives = 133/371 (35%), Gaps = 98/371 (26%)

Query: 173 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 232
              I+YTSGT+G PKGV+LTH   A  +    L        +  DDV L+ LPL HI   
Sbjct: 83  TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134

Query: 233 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 292
                               NA       +   LL G   V           L       
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159

Query: 293 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 345
            R +D + K+             +  KQ  +    D              LR V     P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207

Query: 346 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 400
            +     F       F   LV+GYG+TET  P     P +    G+ G      E+R+  
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260

Query: 401 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 454
               EVP            GE+ VR      +F GYY  P+ T ++  +GWFHTGD G+ 
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRR 312

Query: 455 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS-------ML 507
             +G +  +DRKK+ I+   GE ++   +E      P + +  V    + S         
Sbjct: 313 DEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA--VPSELGEDEVKA 369

Query: 508 VAVVVPCEEDT 518
           V V+ P E   
Sbjct: 370 VVVLRPGETLD 380

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  117 bits (294), Expect = 1e-27
 Identities = 132/513 (25%), Positives = 200/513 (38%), Gaps = 114/513 (22%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T++E+ + V  +  AL   G   G RV I   N  ++VE++ A N L  I VP+   L P
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + F++       V  +       ++   R    L   V     +++            
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 198
              D  L    +         P +I       IMYTSGT+G PKG VLTH  +       
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206

Query: 199 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 257
              +G D             DV    +PL HI             A +G           
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232

Query: 258 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317
               + P LL G P V   I+      L    P   ++ D L   K+  + +   Q +A 
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278

Query: 318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 373
               + A ++ + R    LR++  G AP S  +   LR     F    ++  +G TE   
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329

Query: 374 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRG 423
           P T C     D +  +G+ G V          +P +    +D+     P    GE+  R 
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKV----------IPTVAARVVDENMNDVPVGEVGEIVYRA 378

Query: 424 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 483
            TL SGY+ NP+ T E+   GWFH+GD+ +    G V ++DRKK++I IS GE +    +
Sbjct: 379 PTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEV 437

Query: 484 ENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 513
           ENV    P I ++ V G   +    + VAV   
Sbjct: 438 ENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Length = 542

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  114 bits (286), Expect = 1e-26
 Identities = 141/547 (25%), Positives = 205/547 (37%), Gaps = 124/547 (22%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T++++ + V ++   L A G +PG RVGI+  NC +W+    A   +  I V +      
Sbjct: 47  TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106

Query: 89  GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 130
             + + L  + + +V   D          ++ELL P     Q           LR +V  
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165

Query: 131 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 182
               A               W E    G+    E L           P NI    YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212

Query: 183 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 239
           +G PKG  L+H  I    +     L L +  D++ V       +PL H    V+      
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265

Query: 240 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 297
             GA + Y     D  A    + E + T L GVP +F          + EL   +R  FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315

Query: 298 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 357
                                                 LR  I  GAP   EV    RV 
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338

Query: 358 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 412
                A +   YG+TET   +      +     V T G    + E+++ + P+    P  
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397

Query: 413 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 471
           +   GE+C RG ++  GY+ NP+ T ESI  DGW HTGD+  +   G V+I+ R K++I 
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI- 454

Query: 472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE---EDTKKWA-YSNGH 527
           I  GE +    +E      P + D+ V+G           VP E   E+   W     GH
Sbjct: 455 IRGGENIYPREIEEFLFTHPAVADVQVFG-----------VPDEKYGEEIVAWVRLHPGH 503

Query: 528 AGSFLEL 534
           A S  EL
Sbjct: 504 AASEEEL 510

Length = 558

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  109 bits (275), Expect = 3e-26
 Identities = 96/363 (26%), Positives = 143/363 (39%), Gaps = 85/363 (23%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           I++TSGT+G PKGV LTH+ +      +         K+T  D  L+ +PL HI      
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55

Query: 236 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 291
                        HG + +L         TLLAG     P  F                 
Sbjct: 56  -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80

Query: 292 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 348
             + +D + KY++ W +       A P     LL   K        RLR + S  APL  
Sbjct: 81  -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132

Query: 349 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 402
            V    E+   V     +++ YG+TE         P    +   G+ G  +        E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181

Query: 403 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 460
           V  +     PL     GE+ +RG  + +GY  NP+  RE+  DGWF TGD+G +  +G +
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYL 241

Query: 461 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEED 517
            +  R K LI    GE ++   +E V    P + +  V+G   +     + A VV    D
Sbjct: 242 FLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVL-RAD 299

Query: 518 TKK 520
           +K 
Sbjct: 300 SKV 302

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  110 bits (276), Expect = 6e-26
 Identities = 110/477 (23%), Positives = 165/477 (34%), Gaps = 126/477 (26%)

Query: 29  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
           TY+E+ E   ++   LRA+ G  PG RV +      + V A+ A        VPL D   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59

Query: 88  PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 146
           P   + FIL+ A    +         L          L   +   +L             
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115

Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 206
                               P  P ++  ++YTSG++G PKGVV+TH ++   ++ +   
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 207 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
                  +  DD  L F  L+   D           ASV               E+   L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183

Query: 267 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 320
           LAG      P              +E R     +   + ++ +  +N        +P L 
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223

Query: 321 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 379
            LLA     A     LRLVI GG  L+   V+ +      A L+  YG TET   T    
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277

Query: 380 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 424
                   TA  V      R   VP +G  PL +                  GE+ + G 
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327

Query: 425 TLFSGYYKNPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKI 472
            +  GY   P+LT E  +   F          TGD+ + LP+G ++ + R  + +KI
Sbjct: 328 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI 384

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  108 bits (272), Expect = 6e-25
 Identities = 114/365 (31%), Positives = 157/365 (43%), Gaps = 104/365 (28%)

Query: 178 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 229
           Y+SGT+G PKGV+LTH+ + T V+  VD     L+          DDV L  LP+ HI  
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238

Query: 230 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE--KIHEGIKKALEE 287
           L+ V+                 L  LR     +   +L  +   FE   + E I++    
Sbjct: 239 LNSVL-----------------LCGLR-----VGAAIL--IMPKFEIGALLELIQRHKVT 274

Query: 288 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLA---DLLAFRKVKARLGGRLRLVISGGA 344
           + P    I  A+ K               SP+    DL + R V            SG A
Sbjct: 275 IAPFVPPIVLAIAK---------------SPVVEKYDLSSIRMVL-----------SGAA 308

Query: 345 PLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV----------GTAGPVS 393
           PL  E+E+  R     A L QGYG+TE  GP        MC+           G+ G V 
Sbjct: 309 PLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPVKSGSCGTVV 362

Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
             +EL++ + PE G S L     GE+C+RG  +  GY  +P+ T  +I  DGW HTGDIG
Sbjct: 363 RNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIG 420

Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 512
            I  +  + I+DR K LIK  +G  VA   LE +    P I D             A VV
Sbjct: 421 YIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIAD-------------AAVV 466

Query: 513 PCEED 517
           P +++
Sbjct: 467 PMKDE 471

Length = 537

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  107 bits (270), Expect = 1e-24
 Identities = 122/511 (23%), Positives = 197/511 (38%), Gaps = 107/511 (20%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
           G   +++Y E+ EE  +I++ LRA G +PG  V +       +V A  AC     + VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 83  YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 141
                         + E +    + + + ELL SP   +   L   +      A  + + 
Sbjct: 95  ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145

Query: 142 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 201
           V    +  S      L         P +P +   ++ TSG++G PK VVLTH  I     
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192

Query: 202 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 256
                L +    + V     DDV L+++PL H+               +   H     LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229

Query: 257 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 313
           D            V    ++IH      L +  PLR    D + +Y++   W  N  +  
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273

Query: 314 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 367
                L D L   + ++     LR +I+ G  +  +    FL +          +   +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328

Query: 368 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 408
           ++ETC   T    F       G       GP+   +    E V   E+G           
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388

Query: 409 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 463
               + L +   G + VRG T+ SGYY+NP+   E+   DGWF TGD+G +  +G + I 
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTIT 447

Query: 464 DRKKNLIKISQGEYVALEYLENVYCVAPIIE 494
            R+K++I I+   Y   E +E      P +E
Sbjct: 448 GREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  104 bits (262), Expect = 8e-24
 Identities = 110/370 (29%), Positives = 142/370 (38%), Gaps = 90/370 (24%)

Query: 168 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 227
           P P     I+YTSGT+G PKGVVL+   IA     +D   + ++   T DDV +  LPL 
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179

Query: 228 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 277
           H+   V+      R G             Y            +    TL  GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230

Query: 278 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 337
                   E  R LR                                     ARL     
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245

Query: 338 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 397
           LV SG A L   V + L        V+ YG+TET   T     D     G  G      E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303

Query: 398 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 455
            RL  V E G   P D    GE+ VRG TLF GY   PD T  +   DGWF TGD+  + 
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361

Query: 456 PNGVVKIIDRKK-NLIK-----ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSM 506
           P+G+ +I+ R+  +LIK     I  GE      +E      P + +  V G   D L   
Sbjct: 362 PDGMHRIVGRESTDLIKSGGYRIGAGE------IETALLGHPGVREAAVVGVPDDDLGQR 415

Query: 507 LVAVVVPCEE 516
           +VA VV  ++
Sbjct: 416 IVAYVVGADD 425

Length = 471

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  103 bits (258), Expect = 4e-23
 Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 38/214 (17%)

Query: 294 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 348
            I+D + K+K+  +         +P     LA+  A    K  L   +R V++ GAP   
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295

Query: 349 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 399
            V    ++    F +   YGLTET GP TVC    E      A P    + L+       
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349

Query: 400 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 452
             LEEV    PE     P D    GE+ +RG T+  GYYKNP+ T E+   GWFH+GD+ 
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLA 409

Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 486
            + P+G ++I DR K++I IS GE ++   +E V
Sbjct: 410 VVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  100 bits (249), Expect = 4e-22
 Identities = 102/342 (29%), Positives = 150/342 (43%), Gaps = 67/342 (19%)

Query: 170 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 227
           P ++  + YT GT+G PKG +LTH  + + VS  D++      + T  DV   +  LPL 
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248

Query: 228 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 285
           HI    VI     RRG  +  +   D+ A+  D+ E + T+  GVP ++         AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300

Query: 286 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 345
                L +R   +L                              A +G       SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323

Query: 346 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 405
           L  EV  F        L  G+G+TETC P T   P+     G   P S+   L L  + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375

Query: 406 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 458
           +    LDDP    P GEV    +RG  +  GY+  P+ + E+ +   F TGDIG +  +G
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDG 435

Query: 459 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
              ++DRKK++I IS G  V  + +E      P ++++ V G
Sbjct: 436 YFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIG 476

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 99.9 bits (249), Expect = 5e-22
 Identities = 141/640 (22%), Positives = 214/640 (33%), Gaps = 176/640 (27%)

Query: 8   GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 67
           GNR      FVDG                VL + + L   G   G  V I   N   ++E
Sbjct: 29  GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 68  AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 115
            + A      I  PL         N+     E           + V D+       EL +
Sbjct: 73  WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123

Query: 116 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 164
               S    +V +   S        +    EM  Q  +      Y+W             
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169

Query: 165 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 219
                P +   I +TSGT+G PKGV ++H  +            Q   K+ +     DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215

Query: 220 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 279
           YL   PL HI                    G L++    LM        G   V      
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243

Query: 280 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 331
            + K            FDA    K A   +  KQ   + +       ADL++  RK    
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284

Query: 332 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 389
                +R +++GG  LS+  + +  ++   A L   YG+TE C   T     +  +    
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344

Query: 390 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 435
             +   ++ +   V               E+     +    G +  RG  +  GY+    
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404

Query: 436 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 494
            T   +  DGW  TGDIG I   G + +I R  + IK + GE V  E +E V    P + 
Sbjct: 405 ETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVA 463

Query: 495 DIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN---GHAGSFLELCSLVQLQNYILSELKNA 551
            + V G    S L  +VV C      W +S+    +A   L L S           L++ 
Sbjct: 464 SVVVVG-VPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSS---------ETLRHH 513

Query: 552 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 591
                L  F+  K  +   +PF      +T T K +R+++
Sbjct: 514 CREKNLSRFKIPKLFVQWRKPFP-----LTTTGKIRRDEV 548

Length = 563

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 99.4 bits (248), Expect = 6e-22
 Identities = 132/503 (26%), Positives = 198/503 (39%), Gaps = 87/503 (17%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY+E+   V ++   L   G   G  V     N  ++     AC+ +  +  PL      
Sbjct: 57  TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             ++F+L HAE   V V  K  +         A+RLR            + + V  G   
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167

Query: 149 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 196
            S++  L +    E E     IL    P P ++  ++YTSGT+G+PKGV+ T  T    I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226

Query: 197 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 256
             +   + L           DDV L   P+AH                 G+ +G      
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256

Query: 257 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 316
              + + P +L G   V + I +   +A E +R              + +  M      +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293

Query: 317 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 375
           +P L DL    K   R    LR  +  GAP+   + E  R    A +V  +G+TE    T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353

Query: 376 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 433
                 PDE     T G      E+R   V +   +PL     G + VRG + F GY K 
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409

Query: 434 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 493
           P L      DGWF TGD+ +I  +G ++I  R K++I I  GE + +  +E +    P I
Sbjct: 410 PQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAI 467

Query: 494 EDIWV--YGDS-LKSMLVAVVVP 513
             + +  Y D  L     A VVP
Sbjct: 468 AQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 54/313 (17%)

Query: 167 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 224
              P ++  + YT GT+G  KG  L H  I   V  ++ +L    +K    D   ++  L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259

Query: 225 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 284
           PL HI    +          +G   G  N            +L   PR        I   
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293

Query: 285 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 344
           ++EL+  +  IF A+     A +N        +P  D L F K+    GG       G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338

Query: 345 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 401
                 E +L +T C  + +GYGL+ET  P   C P D     GT G P+ S    +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396

Query: 402 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 460
           +  ++   PL +P  GE+C+RG  + +GY+  PD T + +  DG+F TGD+G +   G  
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451

Query: 461 KIIDRKKNLIKIS 473
           KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464

Length = 557

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (243), Expect = 2e-21
 Identities = 134/514 (26%), Positives = 207/514 (40%), Gaps = 82/514 (15%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 84
           T+   +++V +  + L+  G E G RV I   NCPQ V           I V   PLY  
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 85  -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 133
                 L       IL    +D VF +   V+     +     R+   + F        +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167

Query: 134 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 187
             +Q  + V+      S  E +HL    E E+     +P  P N +  + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222

Query: 188 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 247
           GV+LTH+ +   VS   + +    +    ++V L  LP  H+                  
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261

Query: 248 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 306
            +G    +   +M+    +L  +P+   + + E IKK    L P    I+ AL       
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313

Query: 307 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 366
                     SPL        +K      +R  ISG APL  EV+E         LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355

Query: 367 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 426
           GLTE+   T   F  E  + G+ G     +E  +  + E G   L     GE+ V+G  +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413

Query: 427 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 486
             GY+  P+ T   + DGW HTGD+G +  +G   + DRKK++I ++ G  V    +E V
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMI-VASGFNVYPREVEEV 472

Query: 487 YCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDT 518
                 ++++   G  D  +   V   V  +E T
Sbjct: 473 LYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT 506

Length = 563

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 96.0 bits (239), Expect = 8e-21
 Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 58/329 (17%)

Query: 168 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 226
           PQ  ++  + YT GT+G  KG +LTH   +A  +    L      +     ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260

Query: 227 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 286
            HI       Y F          G+ N L  +            PR    +       ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294

Query: 287 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 346
           EL   +   F  L    +A  N      EA        FRK+       L+L +SGG  L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338

Query: 347 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 403
                E +  VT CA   +GYG+TET  P     P +   VGT G PV S   ++  ++ 
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396

Query: 404 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 462
            E+   PL +   GE+CV+G  +  GY++ P+ T E +  DGW  TGDI  I  +G ++I
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRI 451

Query: 463 IDRKKNLIKISQGEYVALEYLENVYCVAP 491
           +DRKK++I +S G  V    LE+V    P
Sbjct: 452 VDRKKDMILVS-GFNVYPNELEDVLAALP 479

Length = 562

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 95.0 bits (237), Expect = 9e-21
 Identities = 87/366 (23%), Positives = 144/366 (39%), Gaps = 76/366 (20%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           I++TSG++G PKGV ++H  +A+F+  +    D     +T  DV+ +  P          
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147

Query: 236 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 290
             F            DL+     + +L P L +G     +P+      E I   L     
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179

Query: 291 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
               +F+ L ++ L  W+++       S  + LL  R++       LR  +  G  L  +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229

Query: 350 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 404
             +   R    A ++  YG TE     T      E   +    P+        LR   + 
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287

Query: 405 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVV 460
           E G  P+     GE+ + G  +  GY  NP+ T ++        W+ TGD+  +  +G++
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLL 346

Query: 461 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVPCE-- 515
             + RK   IK+  G  + LE +E      P +E+   + V        LVA VV  E  
Sbjct: 347 VYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGA 405

Query: 516 EDTKKW 521
            DTK  
Sbjct: 406 LDTKAL 411

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 126/524 (24%), Positives = 189/524 (36%), Gaps = 95/524 (18%)

Query: 10  RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 69
                RP +   FG   W TY E          AL A+G + G RV +   N  ++++  
Sbjct: 32  ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88

Query: 70  EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 129
             C  L  I VP+   L    +  IL ++    + V+   +  L + D        V   
Sbjct: 89  LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146

Query: 130 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 186
              L      ++V  G   +S      L         P    QP +   I+YTSGT+G  
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 187 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
           KGV   H   A F      S  DL +         DDV  + LPL H             
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233

Query: 242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 301
                      NAL          LLAG   V E             R      + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266

Query: 302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 361
           +      + Y       +  LL+    ++    R+R+ +  G P +     F R      
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319

Query: 362 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 421
           L+ GYG TET     V    +    G+ G ++   E R+  V E     L D   GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374

Query: 422 RGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 478
           R    F   +GY+  P+ T E+  + WFHTGD      +G  + +DR K+ I+  +GE +
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENI 433

Query: 479 ALEYLENVYCVAPIIEDIWVYGDSLKSML----VAVVVPCEEDT 518
           +   +E V    P +    V+   + S L    V   V   + T
Sbjct: 434 SSFEVEQVLLSHPAVAAAAVF--PVPSELGEDEVMAAVVLRDGT 475

Length = 542

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 93/364 (25%), Positives = 142/364 (39%), Gaps = 94/364 (25%)

Query: 176 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 231
           +++TSGT G PKGV+LTH  I      + + ++L         T  DV++   PL H   
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239

Query: 232 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 291
                       + G+ HG           +    L G   V   I       L  L   
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273

Query: 292 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 349
                    + +   M +G     A+P + DLL    K  A L   LR  + GG  +  +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317

Query: 350 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 397
           V        C      L+  YG TE+  P  V   D+     + T G       + V  E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371

Query: 398 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 455
            R + +P         P C GE   RG  +F GY   P+LT  ++  +GW+++GD+ ++ 
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421

Query: 456 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 512
             G +KI  RKK++I +  GE ++   +E++    P I D  V     + L     A VV
Sbjct: 422 EAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVV 480

Query: 513 PCEE 516
               
Sbjct: 481 LKAP 484

Length = 547

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 97/341 (28%), Positives = 145/341 (42%), Gaps = 73/341 (21%)

Query: 150 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 209
            + + L  G+   ++ +P    +I  + YT GT+G  KG +LTH  +   +  V   L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 210 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 264
              D   +     +V ++ LPL HI       Y F          G+ N L  +      
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292

Query: 265 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 323
                 PR        I   ++EL   R      L    +A M+  G+K  + S      
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333

Query: 324 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 381
                       L+L  SGG  L     E + ++T C  +V+GYGLTET  P     P  
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380

Query: 382 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 433
           E+  +GT G PV           P      +DD          GE+C++G  +  GY++ 
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429

Query: 434 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           P+ T E++  +GWF TGDI  I P+G V+I+DRKK+LI +S
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVS 470

Length = 562

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 91.9 bits (229), Expect = 1e-19
 Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)

Query: 366 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 408
           YGLTET GP TVC         P +         G   P    V+V     ++ VP    
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383

Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 468
              D    GE+  RG  +  GY KNP  T E+   GWFHTGD+  + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440

Query: 469 LIKISQGE 476
           +I IS GE
Sbjct: 441 II-ISGGE 447

Length = 545

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 73/314 (23%)

Query: 173 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 229
           +    +T GT+G PK    +H           L        +   DV L+ LPL H+   
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58

Query: 230 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 279
           +   +      RGA+V      G+ +    A+  +  ++    + TLL+ VP V      
Sbjct: 59  IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107

Query: 280 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 339
                                                  LA LL      A +   LR  
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127

Query: 340 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 398
           ++G APL  EV   F  VT    +V+GYG+TE  G + +         G+ G    Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186

Query: 399 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 456
           R+ ++   G    D  P   G + +RG  +F GY  +       + DGW +TGD+G+I  
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDA 246

Query: 457 NGVVKIIDRKKNLI 470
           +G + +  R K+LI
Sbjct: 247 DGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 114/499 (22%), Positives = 185/499 (37%), Gaps = 79/499 (15%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ EEV +  +ALR  G E   RV +   + P++  A      +  + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
               + L+ +    + +  +++ E+L P  +    LR ++            A       
Sbjct: 92  DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
               + +      E+E       ++   +Y+SG++G PKGVV  H  +       + +  
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195

Query: 209 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 263
                +T DDV  S   L  A+ L   +  YF    GA+                +   K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252

Query: 264 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 323
           PT+  GVP                           LY                   A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267

Query: 324 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 383
           A  +   R    LRL +S G  L  E+    +      ++ G G TE         P   
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326

Query: 384 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 442
              GT+G PV  Y E++L  V E G   + D   GE+ VRG +  +GY+   + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382

Query: 443 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS 502
             W  TGD      +G      R  +++K+S G +V+   +E+     P + +  V G  
Sbjct: 383 GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAE 441

Query: 503 LKSMLV---AVVVPCEEDT 518
            +  L    A VV  +   
Sbjct: 442 DEDGLTKPKAFVVLKDGYQ 460

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY+E Y+   ++ SAL   G   G  V +   N P  +EA         + VPL   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 145
             + FIL+H+E   +FV D++   L             +   +   S  AE  E      
Sbjct: 91  DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144

Query: 146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 205
                +++ L  G  + + I P   ++  ++ YTSGT+G+PKGVV TH     +++ +  
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199

Query: 206 FLDQFEDKMTVDDVYLSFLPLAH 228
            +   E  M    VYL  LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 87.7 bits (218), Expect = 4e-18
 Identities = 62/233 (26%), Positives = 90/233 (38%), Gaps = 35/233 (15%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
           S ++YP    L         FG   W TY E+   V ++ +AL   G + G RV   G N
Sbjct: 20  SARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHN 70

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
              +     AC     + VP+   L    + +ILDH+      V        L+P   +A
Sbjct: 71  SDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA-----LAPTAEAA 125

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF----NICTIM 177
             L  +            + +     P  W +F    +   +    P       ++  I+
Sbjct: 126 LALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVELADDDLAQIL 177

Query: 178 YTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAH 228
           YTSGT   PKG +LTH   IA +VS  V          M+ DD+ L  LPL H
Sbjct: 178 YTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 87.7 bits (217), Expect = 4e-18
 Identities = 93/455 (20%), Positives = 152/455 (33%), Gaps = 95/455 (20%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+     ++   L + G  PG  V I      + V A+ A        VPL      
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + +IL+ +    +  Q       L  D      L                A+   +  
Sbjct: 314 ERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALSE 352

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
               + +    + +          +  I+YTSG++G PKGV + H  +A  ++       
Sbjct: 353 IPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG---A 400

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLMEL 262
           +F   +  DD  L+   L+   D  + E F     GA +         D  AL + L   
Sbjct: 401 RFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456

Query: 263 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 322
             T+L  VP                                   + +         L   
Sbjct: 457 GITVLLLVP---------------------------------LLLRL---------LLLA 474

Query: 323 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFP 380
                + +    RLR ++SGG  L   + + L         L+  YG TE     T+  P
Sbjct: 475 ALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDAP 529

Query: 381 DEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 438
                      V +   +   ++  +  G  PL     GE+ + G  L  GY   PDLT 
Sbjct: 530 SFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTA 589

Query: 439 ES-IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 472
           E  I    + TGD+ + L +G ++ + RK + +KI
Sbjct: 590 ERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI 624

Length = 642

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 87.2 bits (216), Expect = 5e-18
 Identities = 98/370 (26%), Positives = 153/370 (41%), Gaps = 63/370 (17%)

Query: 153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 212
           E L LG+ + M  L  +P +I  + YT GT+G  KG +LTH  +   +     +L     
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249

Query: 213 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 272
                +V ++ LPL HI         F +        G  N L  +            PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290

Query: 273 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 332
                   +   ++EL+  R   F  +        N  +     +P  D + F  +K  L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335

Query: 333 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 392
           GG       G A   +  E + +VT    LV+ YGLTET  P     P  + +    G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384

Query: 393 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 444
            +        +P       DD          GE+C++G  +  GY+K P+ T + +  DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437

Query: 445 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS 502
           W HTGDI ++   G V I+DRKK++I +S G  V    +E+V  + P + ++   G  D 
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDE 496

Query: 503 LKSMLVAVVV 512
               +V VV+
Sbjct: 497 KSGEIVKVVI 506

Length = 560

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 362 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 416
           + Q YG+TET     T+   D +  +G+AG      EL++E+         D        
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331

Query: 417 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 475
            GE+ V+G  +  GY    D TRE+  DGWF TGDIG +   G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390

Query: 476 EYVALEYLENVYCVAPIIEDIWVYG 500
           E +    +E V    P + +  V G
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVG 415

Length = 483

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 86.2 bits (214), Expect = 7e-18
 Identities = 91/357 (25%), Positives = 129/357 (36%), Gaps = 80/357 (22%)

Query: 173 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 224
           I   +YTSGT+G PKGV+  H    TF        + F  +   +   D   S    F  
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145

Query: 225 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 280
             L + L       F    GAS     G     A+ D L   +PT+L GVP ++      
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193

Query: 281 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 340
                                                    LL      A L   +RL +
Sbjct: 194 ---------------------------------------RALLESGAGSAPLFRSVRLCV 214

Query: 341 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 399
           S G  L   + E         ++ G G TE         P      GT G PV  Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272

Query: 400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 459
           L  V E G         G++ VRG +L  GY+  P+ T+ ++ DGW  TGD      +G 
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329

Query: 460 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVP 513
            +   R  ++IK+S G++V+   +E      P + +   + V  +     L A VVP
Sbjct: 330 YRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVP 385

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 86.0 bits (213), Expect = 1e-17
 Identities = 127/513 (24%), Positives = 193/513 (37%), Gaps = 100/513 (19%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY  + E VL + S LR  G   G RV IY     + V AM        + VP+   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             V  IL    +  + V   +  +LL P       LR ++         +      G +P
Sbjct: 87  EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 149 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 205
            SW + L LG        PP P    ++  I+YTSG++G PKGVVL+H  +      V  
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197

Query: 206 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 265
           +L+        DD  L+ LPL+        +Y F +  +  +Y G    L D L+     
Sbjct: 198 YLE-----NRPDDRLLAVLPLSF-------DYGFNQ-LTTAFYVGATVVLHDYLL----- 239

Query: 266 LLAGVPR-VFEKI-HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 323
                PR V + +   GI   L  + PL  ++       +L W           P +   
Sbjct: 240 -----PRDVLKALEKHGI-TGLAAVPPLWAQLA------QLDW-----------PESAAP 276

Query: 324 AFRKVKARLGGRL-RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 382
           + R +    GG + R  +S           FL           YGLTE    T +  P+E
Sbjct: 277 SLRYL-TNSGGAMPRATLSRLRSFLPNARLFLM----------YGLTEAFRSTYLP-PEE 324

Query: 383 M----CMVGTAGP---VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 435
           +      +G A P   V V  E   E  P            GE+  RG  +  GY+ +P+
Sbjct: 325 VDRRPDSIGKAIPNAEVLVLREDGSECAPG---------EEGELVHRGALVAMGYWNDPE 375

Query: 436 LTRE------------SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 483
            T E             + +    +GD  +    G +  + R+  +IK S G  V+   +
Sbjct: 376 KTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPTEV 434

Query: 484 ENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 513
           E V     ++ +   +G    +L   +V VV P
Sbjct: 435 EEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 85.7 bits (213), Expect = 1e-17
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 26/164 (15%)

Query: 335 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 389
            LR++  GGAPLS E+   +       L Q +G+ E  G   V +     P ++ M  T 
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310

Query: 390 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 442
           G P+S   E+R+     E VP            GE+  RG     GYY+ P+    +   
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362

Query: 443 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 486
           DG++ TGD+ +I  +G  +++ R K+ I    GE ++ E +EN+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENL 405

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 341 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 387
           +G AP    L    E+  RVT        YGL+ET GP+TVC          P+E   + 
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371

Query: 388 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 445
               V       L+ V    M   P D    GE+ +RG  +  GY KNP    E+  +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431

Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 493
           FH+GD+G   P+G ++I DR K++I IS GE ++   +ENV    P +
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAV 478

Length = 567

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 334 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 391
             L   I GG     + + +F RV   A  +  YGLTETC G T +    E+  +G+ G 
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323

Query: 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 451
              + E+R+ +     + P +    GE+C+RG  +  GY+K+P+ T E+    WF +GD+
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV 380

Query: 452 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLV 508
           G +   G + + DRKK++I IS GE +A   +E V    P + +  V G   D     + 
Sbjct: 381 GYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERIT 439

Query: 509 AVVV 512
           AVVV
Sbjct: 440 AVVV 443

Length = 497

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 335 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 394
            LRLV++G   L     E         +++GYG TE     +V  P      GT G    
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318

Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIG 452
             E+R+       +  L     G + VRG  + SGY  N + T E  +  DGW+ TGDIG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376

Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 512
           +I  +G + I+ R K   KI  GE V+L  +E       ++ +I        S+  AV V
Sbjct: 377 KIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVEE------LLSEIL----PEDSLHAAVEV 425

Query: 513 PCEE 516
           P E+
Sbjct: 426 PDEK 429

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 391
            L+L + GG  +   V E ++++T   +L++GYGLTE C P     P D     G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383

Query: 392 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 450
           V S   +L  ++  E+   P  +P  GE+ V+G  +  GY++ P+ T E I DGW  TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438

Query: 451 IGQILPNGVVKIIDRKKNLIKIS 473
           I  +   G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461

Length = 560

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 84.9 bits (211), Expect = 3e-17
 Identities = 137/513 (26%), Positives = 191/513 (37%), Gaps = 159/513 (30%)

Query: 15  RPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNA 74
            PF++   G     TY ++     ++ + L A G +PG RV +     P   EA+    A
Sbjct: 18  APFIETPDGLRY--TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP---EAL----A 68

Query: 75  LSLICV-------PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM 127
           L L  +       PL        +++ +  AE   + V D      LS     A      
Sbjct: 69  LYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA-LVVCDPANFAWLSK---IAAAAGAP 124

Query: 128 VCFT-------SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 180
              T       SL                  D+F         E +P    ++  I+YTS
Sbjct: 125 HVETLDADGTGSLLEAAAAAP----------DDF---------ETVPRGADDLAAILYTS 165

Query: 181 GTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 239
           GT+G  KG +L+H  + +  ++ VD +      + T DDV +  LP+ H           
Sbjct: 166 GTTGRSKGAMLSHGNLLSNALTLVDYW------RFTPDDVLIHALPIFHT---------- 209

Query: 240 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 299
                    HG   A           LLAG   +F                L +  FD  
Sbjct: 210 ---------HGLFVAT-------NVALLAGASMIF----------------LPK--FDP- 234

Query: 300 YKYKLAWMN-----MG----YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 350
               LA M      MG    Y +    P        +  A     +RL ISG APL  E 
Sbjct: 235 -DAVLALMPRATVMMGVPTFYTRLLQEP-----RLTREAAA---HMRLFISGSAPLLAET 285

Query: 351 -EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDEMCMVGTAGPVSVYSEL 398
             EF   T  A L + YG+TET   T           TV FP    + G          L
Sbjct: 286 HREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP----LPGV--------SL 332

Query: 399 RLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 454
           R+ + PE G + L   P GE+    V+G  +F GY++ P+ T E    DG+F TGD+G+I
Sbjct: 333 RVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387

Query: 455 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 487
              G V I+ R K+LI IS G Y       NVY
Sbjct: 388 DERGYVHIVGRGKDLI-ISGG-Y-------NVY 411

Length = 504

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 83.4 bits (207), Expect = 3e-17
 Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 106/379 (27%)

Query: 172 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 231
           ++  I+YTSG++G+PKGV+L+H  +      +  +L+     +T DD  L+ LP +    
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54

Query: 232 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 278
               +Y        FR G ++       +    L  L  +    + T  AGVP  + +  
Sbjct: 55  ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104

Query: 279 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 338
                 L  L PL R  F +L                                     R 
Sbjct: 105 ------LLRLDPLAREDFPSL-------------------------------------RY 121

Query: 339 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 393
           + + G  L  + + +  R    A L   YGLTE    +T   P+E       +G A P  
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178

Query: 394 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 442
              EL + +         D   C     GE+  RG  +  GY+ +P+ T E +       
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229

Query: 443 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 500
           +   +TGD+ ++   G +  + RK ++IK ++G  V+   +E V C  P++ +  V G  
Sbjct: 230 EIVLYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAEAAVIGVP 288

Query: 501 -DSLKSMLVAVVVPCEEDT 518
              L   +VAVVV  + ++
Sbjct: 289 DPLLGQAIVAVVVSADGES 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 111/345 (32%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           I ++SG++G+PKGV+LTH+ + T +  +         ++T +DV+LS++PL H       
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158

Query: 236 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 294
                    +G     L      + + L PT      R+F +            RPL   
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190

Query: 295 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 345
             D   +++   +   N GYK        E     DL + R           L+ +G  P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239

Query: 346 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 380
           +S ++ EEF        LR      +   YGL E      V FP                
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294

Query: 381 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 426
                         D +  V    P+    E+R+  V + G   L D   G + ++G  +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350

Query: 427 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 470
            SGYY NP+ T++SI  DGW  TGD+G +  NG + I  R K++I
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 126/526 (23%), Positives = 191/526 (36%), Gaps = 171/526 (32%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
           GP V  TY ++++  L++  AL   G + G RV     N  + +EA      +  IC  +
Sbjct: 35  GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94

Query: 83  YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 127
              L P  + +I++HAE      D  FV    + E ++    S +R  V+          
Sbjct: 95  NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151

Query: 128 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 183
               V +    AE            ++W  F                     + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189

Query: 184 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 229
           GDPKGV+ +H +    A   +  D          +  D  L  +PL H            
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 230 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL-KPTLLAGVPRVFEKI 277
                      LD          GASV  Y         +L++  K T  AGVP V+  +
Sbjct: 244 MGTKLVMPGAKLD----------GASV--Y---------ELLDTEKVTFTAGVPTVWLML 282

Query: 278 HEGIKKALEELRPLR----------RRIFDALYKYKL----AW-MNMGYKQREASPLADL 322
            + ++K   +L  L+          R +  A     +    AW M       E SPL  L
Sbjct: 283 LQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMT------EMSPLGTL 336

Query: 323 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 382
            A +   ++L G  RL +                       QGY       P  V    E
Sbjct: 337 AALKPPFSKLPGDARLDV--------------------LQKQGYP------PFGV----E 366

Query: 383 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 442
           M +   AG          +E+P       D    G + VRG  + + YY+        I+
Sbjct: 367 MKITDDAG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG----EIL 406

Query: 443 D--GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 486
           D  G+F TGD+  I   G ++I DR K++IK S GE+++   LEN+
Sbjct: 407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 83.4 bits (206), Expect = 2e-16
 Identities = 128/629 (20%), Positives = 232/629 (36%), Gaps = 80/629 (12%)

Query: 2    SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
            SV ++   R LG       + G   W TY  V     ++ S L A G  PG  +G+    
Sbjct: 436  SVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEA 491

Query: 62   CPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVKELLSPDCRS 120
                V    AC       +PL   +G G  +  ++D  +I  VF     V  +L+  CRS
Sbjct: 492  SRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVAAILT--CRS 546

Query: 121  AQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT 179
             ++L  +V   S   E      +   I    ++     G+   +  +P +       ++T
Sbjct: 547  -RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKEHVTTDTVFT 602

Query: 180  -------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVYLSFLPLAHI 229
                   S +      V +TH  +   +S      +    F+  + V      F P A +
Sbjct: 603  YVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV-----HFTPFAML 657

Query: 230  LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
             +RV     F  G++V     D   L+   ++ +PT+L   P +F      + +A E   
Sbjct: 658  FNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYS 715

Query: 290  PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLS 347
             +   +F+  ++ +   +N+    R  S L   + FR  +  LGG +  ++        S
Sbjct: 716  AVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTS 772

Query: 348  TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 407
              + E + V C    ++      + G   V      C+ GT  P S+  +L         
Sbjct: 773  FSLLEHISV-CYVPCLREVFFLPSEG---VF-----CVDGTPAP-SLQVDLE-------- 814

Query: 408  YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 467
              P D+P  G     G+ + +   K        I   W    D         ++++    
Sbjct: 815  --PFDEPSDGAGI--GQLVLA--KKGEPRRTLPIAAQW--KRD-------RTLRLLGPPL 859

Query: 468  NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTK--KW--AY 523
             ++     EYV    LE ++  +  + DI++Y D  +  ++A+V P   DT   +W  ++
Sbjct: 860  GILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSP-NRDTVEFEWRQSH 917

Query: 524  SNGHAGSFLELCSLVQLQNY----ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDL 579
              G  G         +L  Y    + ++    A+ N L      + V L P  F      
Sbjct: 918  CMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTF 977

Query: 580  VTATLKKKRNKLLIYYQVEIDQLYEKLAP 608
            +T   K +R+ +  Y+   I++ Y  +  
Sbjct: 978  LTPYGKIRRDAVHSYFSSVIERFYSDVET 1006

Length = 1452

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 82.0 bits (202), Expect = 2e-16
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 44/197 (22%)

Query: 339 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 385
           V++GG+P    L  +V+         F V   YGLTE  GP   C         P+   M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 386 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
                    +     V V ++   E VP       D    GE+ ++G ++  GY KNP  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412

Query: 437 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 496
           T E+   GW +TGD+G I P+G V+I DR K++I IS GE ++   +ENV         +
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV---------L 462

Query: 497 WVYGDSLKSMLVAVVVP 513
           + Y   L++ +VA+  P
Sbjct: 463 YKYPKVLETAVVAMPHP 479

Length = 579

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 81.9 bits (203), Expect = 3e-16
 Identities = 83/312 (26%), Positives = 114/312 (36%), Gaps = 81/312 (25%)

Query: 179 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 235
           T GT+G PK    TH  E    ++  + L L          D     LPL H+    V  
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273

Query: 236 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 285
                RGA V      GY       +  +  ++    +   L+GVP V            
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318

Query: 286 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 345
                                             A LL    V       LR  + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344

Query: 346 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 403
           L  EV   F   T    +V+GYGLTE TC  ++V  PD    +G+ G    Y  +R+  +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402

Query: 404 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNG 458
            + G    D      G +C+ G  +FSGY     N  L  E   DGW +TGD+G+I  +G
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADG 459

Query: 459 VVKIIDRKKNLI 470
              +  R K+LI
Sbjct: 460 YFWLTGRAKDLI 471

Length = 632

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 80.7 bits (200), Expect = 4e-16
 Identities = 76/325 (23%), Positives = 113/325 (34%), Gaps = 91/325 (28%)

Query: 169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
            P +   ++YTSG++G PKGVV+TH  I  F+                 D  L F  +A 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150

Query: 229 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 285
             D  I E F                          TLLAG   V    E   E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184

Query: 286 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 344
             LR                  ++       +P L  LL    V       LR +I GG 
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218

Query: 345 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 402
                + +         L+  YG TE       +   P +   +G   P+  Y+   L  
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272

Query: 403 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FH 447
                  P  +P       GE+C+ G  +  GY   P+LT E  I      +      + 
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYR 326

Query: 448 TGDIGQILPNGVVKIIDRKKNLIKI 472
           TGD+ + L +G ++ + RK + +KI
Sbjct: 327 TGDLVRYLEDGSLEFLGRKDDQVKI 351

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 81.5 bits (202), Expect = 4e-16
 Identities = 124/508 (24%), Positives = 177/508 (34%), Gaps = 150/508 (29%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+      I + L+A G  PG RV +       +V A   C     I VP       
Sbjct: 25  TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 89  GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 144
           G     +  IL  A    V      V   L     +   L +++      A     A+  
Sbjct: 84  GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137

Query: 145 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 204
                 W               PP P +I  + YTSG++G PKGV++TH  +   ++ + 
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178

Query: 205 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDL----M 260
                F   +  DDV +S+LPL                     YH        D+     
Sbjct: 179 AIARAFG--LDPDDVGVSWLPL---------------------YH--------DMGLIGG 207

Query: 261 ELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR--RIFDALYKYKLAWM---NMGYK 312
            L+P L AG P V              + P   LRR  R  +A+ +Y+       N  Y 
Sbjct: 208 LLQP-LYAGFPVVL-------------MSPLAFLRRPLRWLEAISRYRATVSGAPNFAY- 252

Query: 313 QREASPLADLLAFRKVK-ARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG- 365
                   DL   R+V+  +L G      R+  +G  P+  + +E F       F   G 
Sbjct: 253 --------DLCV-RRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAE----RFAPAGF 299

Query: 366 --------YGLTETC----------GPTTVCFPDEMCMVGTAGP-----------VSVYS 396
                   YGL E            GP  +    +    G A             VS   
Sbjct: 300 RPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGR 359

Query: 397 ELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGW 445
            L   EV    PE    PL D   GE+ VRG ++ +GY+  P+ T E+          GW
Sbjct: 360 PLPGHEVRIVDPE-TRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGW 418

Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKIS 473
             TGD+G  L +G + +  R K+LI I 
Sbjct: 419 LRTGDLG-FLHDGELYVTGRLKDLIIIR 445

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 80.5 bits (199), Expect = 4e-16
 Identities = 79/319 (24%), Positives = 116/319 (36%), Gaps = 83/319 (26%)

Query: 173 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 224
              + +TSGT+G PK V+ TH      +     +LD   D +  T+ D       + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 225 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 280
            P                GA+V  YHG   +A R  + L     T     P  +      
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183

Query: 281 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 340
                   R L ++                          DL ++          LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203

Query: 341 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 399
           S G PL+ EV ++ R      +  GYG TET G     FP      G+ G P   Y   R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259

Query: 400 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQI 454
           +  + + G   P  +   G++ VR K     LF GY K+P+ T  +I   W+ TGD    
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIK 317

Query: 455 LPNGVVKIIDRKKNLIKIS 473
             +G    + R  ++IK S
Sbjct: 318 DEDGYFWFVGRADDVIKSS 336

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 79.8 bits (198), Expect = 7e-16
 Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 91/330 (27%)

Query: 169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
            P ++  ++YTSG++G PKGV++ H  +   ++      +++   +T  D  L F   + 
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145

Query: 229 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 280
             D  + E F     GA++           D  AL + L E + T+L  VP +   +   
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198

Query: 281 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 340
               L+ L P                                             LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214

Query: 341 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 392
            GG  L  E V  +  +   A LV  YG TET    T               +G      
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274

Query: 393 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--- 447
            VY   E  L  VP            GE+ + G  +  GY   P+LT E  +   F    
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPG 325

Query: 448 -----TGDIGQILPNGVVKIIDRKKNLIKI 472
                TGD+ + LP+G ++ + R  + +KI
Sbjct: 326 ERLYRTGDLARWLPDGNLEFLGRADDQVKI 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 80.5 bits (199), Expect = 7e-16
 Identities = 54/166 (32%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 388
           LR VI  GAP+    ++         LVQ +GL E  G  TV  P            +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341

Query: 389 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 441
            G           E   M     DD     PP   GE+CV G  +F+GYY NP+   ++ 
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 442 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 487
            DGWF TGD+G +   G + I  R  ++  IS G         NVY
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGG--------SNVY 428

Length = 528

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 78.9 bits (194), Expect = 2e-15
 Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 335 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 392
           +L+ +++  APL+ E+            VQ  YGLTE +C   T   P++    G A   
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361

Query: 393 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 447
           SV   L   EV    P+ G S   + P GE+CVR + +  GYY N + T  +I  DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420

Query: 448 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 498
           TGDIG I  +G + I+DR K LIK  +G  VA   LE +    P +ED  V
Sbjct: 421 TGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV 470

Length = 546

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 77.8 bits (192), Expect = 4e-15
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 417 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 472
           GE+C++G   KT+F  YY +P  T + +  DGW HTGD G +   G    +DR+ N+IK 
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426

Query: 473 SQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCE 515
             GE V+   LEN+    P I+DI V G  DS++   + A VV  E
Sbjct: 427 G-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471

Length = 517

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 77.3 bits (190), Expect = 7e-15
 Identities = 116/499 (23%), Positives = 186/499 (37%), Gaps = 79/499 (15%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+E+   V +I   L   G   G  V     N  ++     AC  +  +  PL      
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 89  GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 140
             ++F+L+HA+   VFV     +          L         LR +V       +  + 
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170

Query: 141 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 200
            + T  +  + D    L          P P ++  ++YTSGT+G+PKGV+ T  T+    
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221

Query: 201 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 260
           S +  + ++ E  +   DV L   P+AH                 G+ +G        LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256

Query: 261 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 320
              P +L     V + I    + A E +R                   + +       L 
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG----------------VTFTMASTPFLT 296

Query: 321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 380
           DL    K        L   +  GAP+   + E       A +V  +G+TE  G  TV  P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355

Query: 381 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 437
           D   E        P+    E+++ +      S  +    G + VRG + F GY K P L 
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411

Query: 438 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 497
                +GWF TGD+      G ++I  R K++I I  GE + +  +EN+    P +  + 
Sbjct: 412 STDA-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVA 469

Query: 498 VYG---DSLKSMLVAVVVP 513
           +     + L     AVVVP
Sbjct: 470 IVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 77.2 bits (190), Expect = 7e-15
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 391
           LR + S  APL+ E  + L+    A +V  +G+TE     T             V + G 
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 451
           V   +  ++  V   G  PL     GEV +RG T+  GY  +P +T  +  DGW  TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415

Query: 452 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV- 508
           G +   G + I  R K LI    GE ++ E +E V    P + +  V+G  D L    V 
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVA 474

Query: 509 AVVVPCE 515
           AV+VP E
Sbjct: 475 AVIVPRE 481

Length = 534

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 99/354 (27%), Positives = 138/354 (38%), Gaps = 84/354 (23%)

Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
           P+ W   +    V++ +     P ++  I++TSGT   PKGV LTH   A  ++     L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216

Query: 208 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 267
             F  K   DDV +SFLP  H        Y F                      L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248

Query: 268 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 320
           +GVP VF       +KI E I +A           FD +       +    KQ    P  
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299

Query: 321 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 375
                          LR V+ GG      + +E L+      L QGYG TE C P     
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344

Query: 376 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 435
           TV  P     VG   P+     + +  V E    P+     G V  RG +LFSGY    D
Sbjct: 345 TVNSPKHESCVGM--PIR---GMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-D 398

Query: 436 LTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 486
             +  +    + W+ TGD+G +  +G + +  R    +KI   E V+LE LE++
Sbjct: 399 FGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451

Length = 539

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 76.1 bits (188), Expect = 2e-14
 Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 94/301 (31%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 229
            ++TSG++G PK V+ TH  +    + +        ++     V + +LP  H       
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225

Query: 230 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 285
            + V+      +   G  V G +   L  LR    E+ PT+   VP+ FE + +    AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277

Query: 286 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 345
           E    LRRR F                                      RLRL+   GA 
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300

Query: 346 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 394
           L  +V + L          R+   +    G G TET    T   +P +      +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351

Query: 395 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 449
            +   EL+L  VP  G           EV V+G  +  GY+++P+LT E+   +G++  G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400

Query: 450 D 450
           D
Sbjct: 401 D 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 417 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           GE+ VR  +L  GY+  P+ T E++ DGW HTGDIG+I   G +  + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471

Length = 567

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 75.0 bits (185), Expect = 3e-14
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)

Query: 366 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 416
           YG TE   P  TV  P+E +   G+AG   +  E R+      +V   E+G         
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368

Query: 417 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 476
            E+  R   L  GY+ +P+ T E+   GWFH+GD+G +   G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426

Query: 477 YVA 479
            VA
Sbjct: 427 NVA 429

Length = 523

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 74.7 bits (184), Expect = 4e-14
 Identities = 92/354 (25%), Positives = 133/354 (37%), Gaps = 69/354 (19%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           ++YTSGT+G PKG +  H  +   + GV+L+ +         DV+ +    A I      
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143

Query: 236 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 295
                              L D L+   P L  GVP V                  R + 
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167

Query: 296 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 350
           FD   +   A M   Y    A   P A L   R+V   +AR   RLR V SGG  L  E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223

Query: 351 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 407
            E+ R      + + YG TE       C    P     +G   P        +  V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278

Query: 408 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 465
             P+     GE+ V+     +F GY+ NP+ T       W  TGD+G+   +G +    R
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGR 337

Query: 466 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCEE 516
             ++IK S G  +    +E      P + +  V G  D  +  +V A VV  E 
Sbjct: 338 ADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEG 390

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 74.5 bits (183), Expect = 5e-14
 Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 28/181 (15%)

Query: 334 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 390
             L+ V  G APLS + +++F++       +QGYG+TE+              VGT G  
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366

Query: 391 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 440
              +S YS + L   P M    +D       PP  CGE+ ++G  +  GY  NP  T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425

Query: 441 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 499
           I  DGW  TGDI     +G + I+DR K +IK  +G  +A   LE V    P I D  V 
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVT 484

Query: 500 G 500
            
Sbjct: 485 A 485

Length = 560

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 7e-14
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 29  TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
           +Y+E+ EE  ++   L +  G   G RV +Y  N PQ+V A  A    + + VP+     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 88  PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 144
              +   +  +      V  +   KV   +        RLR ++           +  + 
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147

Query: 145 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 188
            I   +W             G V   E L     PP     P ++  + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207

Query: 189 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
            + TH T+ A  V  V           T + V L+ LPL H+ 
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 28  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
            T+ E++E V+ +   L A G + G RV +   N  + +  + A   L  + V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 88  PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
              + + LD AE+  +   D    + L P           V F  L    KE       +
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136

Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
            +  DE                   + TIMYTSGT+G PKGV+ T+     + S V   L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175

Query: 208 DQFEDKMTVDDVYLSFLPLAHI 229
           +     +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194

Length = 483

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.5 bits (176), Expect = 4e-13
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 28/195 (14%)

Query: 322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPTTVC 378
           L+A  +        LR V  GGA +S  + +    L +     + +GYGL+E     ++ 
Sbjct: 225 LVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVVSLN 280

Query: 379 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 438
            P      G+ G    + ++ +            D   GE+ VRG +L  GY   P  T 
Sbjct: 281 TPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPPAT- 324

Query: 439 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 498
               D W+ TGD+G +   G + I  RKKNLI  S G  V+ E++E+    AP I    V
Sbjct: 325 ----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVV 380

Query: 499 YGDSLKSMLVAVVVP 513
           +GD+ +  LVA++VP
Sbjct: 381 FGDA-QPFLVALIVP 394

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 71.5 bits (176), Expect = 4e-13
 Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+  EV ++ S L A G   G RVGIY    P+ V A+ A   +  I VP++   GP
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
            AV   L  AE   +   D                                         
Sbjct: 69  DAVATRLQDAEAKVLITADG---------------------------------------- 88

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 193
                FL  GK  +++  P        I+YTSGT+G PKG V TH
Sbjct: 89  -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 380
           D LA   +  R    LR +  GGA +   V E L+       V+GYGLTET   T    P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351

Query: 381 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 429
           D     C+ + T G       P +      LEE+P            GE+ V G  +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397

Query: 430 YYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           Y+  P+ T E+ I  DG  +F TGD+G++   G   I DR K +I  S
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445

Length = 546

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 69.1 bits (170), Expect = 3e-12
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 85
           TY+E  EEV  +   L A G E G RVGI+  N P+WV    A   +  I V   P Y  
Sbjct: 45  TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104

Query: 86  LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 137
                + + L+ +    +   D          + EL  P+  + +  +       L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153

Query: 138 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 185
                  +  G +      ++DE L LG+  +   L        P +   I YTSGT+G 
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213

Query: 186 PKGVVLTHETI 196
           PKG  LTH  I
Sbjct: 214 PKGATLTHRNI 224

Length = 559

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 336 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 389
           L  V  G +P+S   + E +      F  Q YG TE     T     +        + + 
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341

Query: 390 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 444
           G  +    + L      EV         +   GE+CVRG  +  GY+  P+ T E+  DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393

Query: 445 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY---------CVAPIIED 495
           W HTGD+ +   +G   I+DRKK++I ++ G  V    +E+V           V  + ++
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDE 452

Query: 496 IWVYGDSLKSMLVAVVVPCEE 516
            W  G+++     AVVV    
Sbjct: 453 KW--GEAVT----AVVVLRPG 467

Length = 524

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 67.1 bits (164), Expect = 8e-12
 Identities = 99/395 (25%), Positives = 151/395 (38%), Gaps = 94/395 (23%)

Query: 166 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 225
           L    F     MYTSGT+G PKGV +    +A F + +   +D     +  DDV+ +   
Sbjct: 86  LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134

Query: 226 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 285
                            A  G+ +G   A+        P L  G+  VF    EG   A 
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167

Query: 286 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 338
                     +D L +  +   N        SP A    +R + A       R+  +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209

Query: 339 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 394
             S G PL+ EV  + +      +   YG TET     V     +     AG    P+  
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267

Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGD 450
           Y    L++  +    PL D   G++ +   +     FSGY+ +P+ T E I   W+ TGD
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGD 323

Query: 451 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV 508
           + +   +G    I R  ++I IS G  +    +E+     P + +  V G  D L+  +V
Sbjct: 324 LVERDEDGYFWFIGRADDVI-ISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIV 382

Query: 509 -AVVVPCEEDTKKWAYSNGHAGS---FLELCSLVQ 539
            A VV             G+AGS     EL   V+
Sbjct: 383 KAFVV----------LKEGYAGSDELAEELQLFVK 407

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 67.1 bits (165), Expect = 1e-11
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)

Query: 417 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 475
           GE+C RG ++  GY+ +P+ T E+I  DGW HTGD+  +   G V I+ R K++I I  G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457

Query: 476 EYVALEYLENVY 487
                   EN+Y
Sbjct: 458 --------ENIY 461

Length = 559

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%)

Query: 334 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 386
             L  + +GGAP + E     +++ + +        G+G++E    T      +  ++  
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303

Query: 387 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 441
             G AG  +   + R+  V + G    +D P G   E+ +RG  L  GY++ P  T  + 
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357

Query: 442 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
             DGWF TGDI +   +G   ++DRKK++  IS GE V    +E V    P I +  V G
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416

Length = 488

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 93/460 (20%), Positives = 140/460 (30%), Gaps = 106/460 (23%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +  E+   V ++ + L A G   G RV ++  NC +WV    AC  L    + +      
Sbjct: 37  SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96

Query: 89  GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 141
             V  IL      ++ V           +   + PD     R   +V   +         
Sbjct: 97  HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156

Query: 142 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 194
            +  +        L                +   +++T SGT+  PK V      +L H 
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210

Query: 195 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 254
                  G D              V L+ LP                G   G+       
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFC--------------GV-FGF------- 237

Query: 255 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 304
                  L   L  G P V E + +  +  +AL   R         + RRI D       
Sbjct: 238 -----STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287

Query: 305 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 359
                   +R   P A L  F      LG    L  + G PL     S+EV+  +     
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335

Query: 360 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 419
                         P T      +      G      E R+        + L D   GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380

Query: 420 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 458
            +R  +L  GY  NPD T  ++  DG+F TGD+G    +G
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Length = 540

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 65.4 bits (160), Expect = 7e-11
 Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 42/195 (21%)

Query: 336  LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 389
            LR V +G   +  E  +       +R+      ++GYG+TET  P            GT 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961

Query: 390  GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 445
            G +    E RLE VP  + G         G + VRG  +  GY +  NP    E   DGW
Sbjct: 962  GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011

Query: 446  FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 505
            + TGDI  I   G + I  R K   KI+ GE ++L  +E       +  ++W        
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE------LAAELWPDALH--- 1061

Query: 506  MLVAVVVPCEEDTKK 520
               AV +P   D +K
Sbjct: 1062 --AAVSIP---DARK 1071

Length = 1140

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 64.7 bits (158), Expect = 7e-11
 Identities = 89/365 (24%), Positives = 136/365 (37%), Gaps = 75/365 (20%)

Query: 151 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 210
           W + L   +  E       P ++  +++TSGTSGDPK V  TH  +A   +GV L   +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188

Query: 211 EDKMTVDDV-YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG 269
              +  DDV Y+S +PL                     +H   NA+   +      L AG
Sbjct: 189 G--LGPDDVCYVS-MPL---------------------FHS--NAV---MAGWAVALAAG 219

Query: 270 VPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMGYKQREASPLADLL 323
                                LRR+ F A      + +Y   + N   K     PL+ +L
Sbjct: 220 ASIA-----------------LRRK-FSASGFLPDVRRYGATYANYVGK-----PLSYVL 256

Query: 324 AFRKVKARLGGRLRLVISG-GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD- 381
           A  +        LR+V    GAP   ++  F R   C  +V G+G TE  G      PD 
Sbjct: 257 ATPERPDDADNPLRIVYGNEGAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDT 312

Query: 382 -EMCMVGTAGPVSVYSELRLEEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPD 435
               +      V++       E P      G     D   GE V   G   F GYY +P+
Sbjct: 313 PPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPE 372

Query: 436 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
              E +  G + +GD+     +G      R  + +++  GE +    +E +    P   +
Sbjct: 373 ADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATE 431

Query: 496 IWVYG 500
           + VY 
Sbjct: 432 VAVYA 436

Length = 529

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 26  VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 85
             +T+ E Y    ++ SAL   G   G  V +   N P  VEA         +   L   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101

Query: 86  LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 138
           L   ++ F+L H E   + V D +  E+           + +V                 
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 139 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 196
             E  + +G   ++W              LP   ++   + YTSGT+G+PKGVV  H   
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207

Query: 197 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
                      +     M    VYL  LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 63.7 bits (156), Expect = 1e-10
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E   ++   LRA G  PG  V +     P+ V A+ A        VPL      
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + F+L+ +    +   +                   +V        +           
Sbjct: 74  ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
                                  ++  +MYTSG++G PKGV + H  +   V   + ++ 
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163

Query: 209 QFEDKMTVDDVYLSFLPLA 227
                   DD +L   PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 105/458 (22%), Positives = 167/458 (36%), Gaps = 78/458 (17%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y E+  +V ++ +ALR  G +   RV +   +   +  A        ++ V L   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
               ++L+ +    VFV   ++  ++      +  L   V      A + ++A       
Sbjct: 92  DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 205
               E L      + +    Q  +    +Y+SG++G PKGVV TH      A   +   L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 206 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 265
            + +       DDV  S   L           FF  G          NAL         T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223

Query: 266 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 322
               V         G    L   RP    +FD L +++      +   Y        A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266

Query: 323 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 382
           LA   + A    RLRL  S G  L  EV +  +      +V G G TE         P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326

Query: 383 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 441
           +   GT+G PV  Y   RL  V + G       P GE+ + G +  + Y+ N   TR++ 
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381

Query: 442 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
              W  +GD      +G      R  +++K+S G YV+
Sbjct: 382 QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 112/520 (21%), Positives = 177/520 (34%), Gaps = 133/520 (25%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y E+  +  ++   L A+G  P   VGI      + V  + A        VPL      
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + ++LD + +  +  Q   + +L  P       LR +     L      +   +G  P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
                            +   P N+  ++YTSG++G PKGV ++H  +A +V  +   L 
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 262
                +  DD  L     A   D  + E F     GA++         D  A    + + 
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746

Query: 263 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 322
             T+L  VP   + + +     +   RP R  +                   EA  + DL
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGG----------------EALQV-DL 787

Query: 323 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 382
           LA R      G R                          L+  YG TE    TTV     
Sbjct: 788 LA-RVRALGPGAR--------------------------LINHYGPTE----TTV----- 811

Query: 383 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRG 423
                         EL  EE    G  P+  P              P      GE+ + G
Sbjct: 812 ---------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGG 861

Query: 424 KTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQG 475
             L  GY++ P LT E  +      DG   + TGD+ +   +GV++ + R  + +KI +G
Sbjct: 862 AGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RG 920

Query: 476 EYVALEYLENVYCVAPIIEDIWV--YGDSLKSMLVAVVVP 513
             + L  +E      P + +  V          LVA +VP
Sbjct: 921 FRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVP 960

Length = 3956

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 63.0 bits (154), Expect = 3e-10
 Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)

Query: 336  LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 384
            LRLV++G   L  EV +       AF       +++GYG TET    +V  PD +     
Sbjct: 900  LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952

Query: 385  --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 435
                     VG   P V+V    R+  V    +  L     G + + G  +  GY  +P+
Sbjct: 953  RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006

Query: 436  LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 484
             T E I D    GW+ TGD G +  +G + I DR     KI  GE V L  +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 62.6 bits (153), Expect = 3e-10
 Identities = 69/302 (22%), Positives = 108/302 (35%), Gaps = 96/302 (31%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 229
            ++TSG++G PK V+ TH  +      +        ++     V + +LP  H       
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270

Query: 230 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 282
           L  V+       G +   Y  D        D    +L E+ PT+   VP+ +E     + 
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319

Query: 283 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 342
            ALE    LRRR F                                      RL+L+   
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342

Query: 343 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 391
           GA LS +V + L          R+        G G+TET    T    P        AG 
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393

Query: 392 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 448
           + +         P  E+   P+      EV V+G  +  GY++ P+LT E+  + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444

Query: 449 GD 450
           GD
Sbjct: 445 GD 446

Length = 614

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 61.4 bits (150), Expect = 5e-10
 Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 31/202 (15%)

Query: 334 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 391
           GR  L  + GG  L  ++ E L  T    L   YG TET   +T           T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263

Query: 392 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG- 444
           +    VY    +L+   VP  G         GE+ + G  +  GY   P+LT E  +   
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313

Query: 445 -------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 497
                   + TGD+ +  P+G ++ + R  + +KI +G  + L  +E      P + D  
Sbjct: 314 FDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAV 372

Query: 498 VY---GDSLKSMLVAVVVPCEE 516
           V           LVA VVP   
Sbjct: 373 VVVREEGPGDQRLVAYVVPKAG 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 8e-10
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 410 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 469
           P D    G++ VRG  +   Y++        ++DGWF TGD+  I  +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434

Query: 470 IKISQGEYVALEYLENV 486
           IK S GE+++   +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 395
           L  V   GA +   V E +        V  YG TE      +  P      GT      +
Sbjct: 271 LEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFF 326

Query: 396 SELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 454
           SE+R+  +       L +   GE+ V      F+GY   P  T E + DGW+ T D+  +
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVV 386

Query: 455 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVV 511
            P+G V+I+ R  ++I IS GE +    +E V   AP + ++ V G   +     + A V
Sbjct: 387 DPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACV 445

Query: 512 VPCEEDT 518
           VP E +T
Sbjct: 446 VPREGET 452

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+++++EV  +   LRA G +   R+ +   N   WV A  AC    ++C+P+      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
                +L+ A  D +   D        PD  SA                      T    
Sbjct: 61  QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
              D ++ L            P     I YTSG++G PKGV L+   + T    V   L 
Sbjct: 93  LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 245
           +    +   + +L  LPLA +L+ +   Y     GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 58.6 bits (142), Expect = 6e-09
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 390
           L+L+  GGA  S      +       L Q +G+ E      V +     P E+       
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355

Query: 391 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 449
           P+S   E+R+  V + G +P+     G +  RG   F GYYK P+    +   +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 450 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
           D+ ++ P G + ++ R K+ I    GE +A E +EN+    P + D
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHD 457

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E   ++   L A G  PG  VGIY  N  ++VEAM        + V +      
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89

Query: 89  GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCF-TSLTAEQKEMAVQT 144
             + ++LD ++   +  + +   +V E+L        +LR +V        +    AV  
Sbjct: 90  DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGNDLLPGAV-- 143

Query: 145 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 204
                 +++ L  G   E +     P ++  ++YT GT+G PKGV+   E         D
Sbjct: 144 -----DYEDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------D 187

Query: 205 LFLDQFE--DKMTVDDV 219
           +F       D  T + +
Sbjct: 188 IFRVLLGGRDFATGEPI 204

Length = 533

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 417 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 471
           GE+ + G  +  GY+ +P+LT E  I        + TGD+G+  P+G ++ + R  + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386

Query: 472 ISQGEYVALEYLENVYCVAPIIED--IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAG 529
           I  G  V L  +E      P ++   + V GD     L A VV  +      A       
Sbjct: 387 IR-GYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDAAVLRAALA 445

Query: 530 SFL 532
             L
Sbjct: 446 ELL 448

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 57.6 bits (140), Expect = 9e-09
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+      I +ALRA+G  PG  V +      + + A+          VP+      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
                IL  A    V       +         A  L V+                     
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 193
              D                 P ++  +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY ++ + + + + A  A G   G  V +   N P+ + A+ A     L    L+    P
Sbjct: 39  TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94

Query: 89  -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
            G+++   DHA +    ++D  +  L+       +R   ++            A    +K
Sbjct: 95  LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135

Query: 148 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 193
                  L LG V +   L        P P        +I  + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 194 ETIATF 199
            +IAT 
Sbjct: 191 RSIATM 196

Length = 524

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 95/489 (19%), Positives = 152/489 (31%), Gaps = 87/489 (17%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 87
           TY EVY+   +++  LRA G   G RV   G N  + +EA        +++       L 
Sbjct: 26  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84

Query: 88  PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
           P  + +IL+HAE   +         LL            +          +        K
Sbjct: 85  PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129

Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
                         E + +       C + YT+GT+G PKGVV +H  +        L  
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189

Query: 208 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 258
                +     V L  +P+ H+         +    +                     + 
Sbjct: 190 GTALSEKD---VVLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239

Query: 259 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 315
                 T  AGVP V+  +    E                     K     +  G     
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHR---------------LKTLRRLVVGG----- 279

Query: 316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--G 373
           ++    L+A  +        + +    G    TE                  +       
Sbjct: 280 SAAPRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVK 316

Query: 374 PTTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 432
                  +E  + +     + +          E    P D    GEV ++G  +  GYY 
Sbjct: 317 SHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG 376

Query: 433 NPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 491
           N + TR     DG+F TGDI      G V+I DR K+LIK   GE+++   LEN     P
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHP 435

Query: 492 IIEDIWVYG 500
            +++  V  
Sbjct: 436 KVKEAAVVA 444

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
           G   W T++E+   V  + +AL A G   G R+ ++  NC Q  E+M A   L  + VP 
Sbjct: 29  GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86

Query: 83  YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 133
                    NF     E+ ++                 A   R M+C             
Sbjct: 87  --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123

Query: 134 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 188
            +      V  G       ++  +  HLG +V    +    P   C   +TSGT+G PK 
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180

Query: 189 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 228
            VLTH  +A  ++    DL         T  D  L   PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.3 bits (138), Expect = 3e-08
 Identities = 106/468 (22%), Positives = 166/468 (35%), Gaps = 112/468 (23%)

Query: 29   TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
            TY E+     ++  AL A G  P   VGI          AME   +  ++ V L   L  
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624

Query: 89   GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 142
            G     LD    ++        ++D     LL+      QRL +     SL  ++ E   
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677

Query: 143  QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 202
                    W+     G       +   P N+  ++YTSG++G PKGV ++H +    V+ 
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722

Query: 203  VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 260
            +    +++E  +T DD  L F+  +   D   E  +     GASV         +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770

Query: 261  ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 320
                 L A       +IHE           +   +F  +Y  +LA          A    
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806

Query: 321  DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 372
            +  + R               G A      +   R     +L  GYG TET         
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856

Query: 373  GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 432
                 C    M +    G  S Y       V +   +PL     GE+ + G+ +  GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909

Query: 433  NPDLTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 472
             P LT E  +   F         TGD+ +   +GV+  + R  + +KI
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.5 bits (136), Expect = 4e-08
 Identities = 78/361 (21%), Positives = 129/361 (35%), Gaps = 69/361 (19%)

Query: 170  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 229
            P N+  ++YTSG++G PKGV + H  ++  +  +          + V D  L F   +  
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247

Query: 230  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 287
             D  +EE F     GA V         L        P LL  +                 
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282

Query: 288  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 347
               +     D L+ Y                        +  A     L+ ++ GG  L 
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324

Query: 348  TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 405
             ++++  +V     L   YG TE     T+      C+      V +   +  R   + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTEA----TITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378

Query: 406  MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNG 458
                P+     GE+ + G+ L  GY+  P LT E  +   F        TGD+ +   +G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438

Query: 459  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 518
            V++ I R  + +KI +G  + L  +E      P + +  V     +  LVA VVP +E  
Sbjct: 3439 VIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQ-LVAYVVPEDEAG 3496

Query: 519  K 519
             
Sbjct: 3497 D 3497

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 66/317 (20%)

Query: 170  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 229
              N+  ++YTSG++G PKGV ++H  +                +++  D  L F+  +  
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197

Query: 230  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 287
             D   E++F     GA V         +RDD +     L   + R       G+      
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240

Query: 288  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 347
                    F  +Y  +LA     + +R+  P A               +R+   GG  + 
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274

Query: 348  TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 403
               +          +L  GYG TE      +  C P + C  G A  P+      R   +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332

Query: 404  PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQIL 455
             +   + L     GE+ + G+ L  GY   P LT E  +   F         TGD+ +  
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392

Query: 456  PNGVVKIIDRKKNLIKI 472
             +GVV+ + R  + +KI
Sbjct: 2393 ADGVVEYLGRIDHQVKI 2409

Length = 5163

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 38/160 (23%)

Query: 336 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 389
           L+ V+ GGA +  E+ E      + C C     GYGLTE    +TVC    D +  VG+ 
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294

Query: 390 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 446
            P     E++L +              GE+ +RG +L  GY++      L  +   +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334

Query: 447 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 486
            T D G+   NG + I+ R  NL   S GE +  E +E V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV 372

Length = 458

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 55.2 bits (134), Expect = 5e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 40/208 (19%)

Query: 336 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTT--VCFP-DEMCMVGTAGP 391
           LR ++ GG  LS   V   L       L+ GYG TE    TT   C     +     + P
Sbjct: 242 LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTEN---TTFSTCHVITRLDEAADSIP 298

Query: 392 V-------SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 441
           +       +VY    E +   +   G          E+ V G  L  GY   P+LT E  
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPG----------ELYVGGDGLALGYLNRPELTAERF 348

Query: 442 ID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 494
           +      G   + TGD+ +  P+G ++ + R    +KI +G  + L  +E      P + 
Sbjct: 349 VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI-RGFRIELGEIEQALLQHPGVR 407

Query: 495 DIWV----YGDSLKSMLVAVVVPCEEDT 518
           +  V         K  LVA VV      
Sbjct: 408 EAAVLVREDAAGDKR-LVAYVVARGALD 434

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 390
           LRL+  GGA LS  +   +       L Q +G+ E      V +     P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361

Query: 391 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 448
            P+S   E+R+  V   G +P+     GE+  RG     GYY+ P+    +   DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418

Query: 449 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL--- 503
           GD+ +  P+G + +  R K+ I    GE +A E +EN+    P + D  +    D L   
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477

Query: 504 KSMLVAVVVPCEEDTK 519
           KS   A +V  E   +
Sbjct: 478 KS--CAFIVVKEPPLR 491

Length = 542

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 29  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
           T+  +      +  AL    G     RVG    NC + +E + A   +  +  PL   L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 88  PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
              +  I++HAE D V V D ++ E L    +    +R +V      A+     +  GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158

Query: 148 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 206
            YS++  L  G+    +  P         I Y++GT+G PKGVV +H   + ++  + L 
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214

Query: 207 -LDQFEDKMTVDDVYLSFLPLAHIL 230
             D     +T  + +L  +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237

Length = 576

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 55.4 bits (134), Expect = 6e-08
 Identities = 83/351 (23%), Positives = 134/351 (38%), Gaps = 87/351 (24%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 229
            ++TSG++G PK V+ T   +   ++  +       +      V L ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 230 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 285
            + ++      +   G  + G +   +  LR    E+ PT+   VP  +  + E    A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334

Query: 286 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 345
           E+   LRR  F                                       LRL+  GGA 
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357

Query: 346 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 399
           LS ++ E ++               GYG TET  PTT     +   VG  G      EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416

Query: 400 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 455
           L              P G   EV V+G  +  GY+K+P+LT  +   +G++  GD  + +
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463

Query: 456 -PNGVVK--IID-RKKNLIKISQGEYVALEYL--ENVYCVAPIIEDIWVYG 500
            P+   K  I D R     K+S G +V++  L  + V   +P+I D  V G
Sbjct: 464 DPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514

Length = 624

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 336 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 390
           LR   + G PL+ EV   F   T    L++G+G TET    T+       M    G+ G 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357

Query: 391 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 445
           P   Y    ++ +   G    +    GE+ +R   GK   LF GYY++P+ T E   DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413

Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           +HTGD   +  +G +  + R  +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E V ++ + L A G  PG RV +   NCP+++ A  A N L  + VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 89  GAVNFILDHAEIDFVFV 105
             +  ILDH+    + V
Sbjct: 65  EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 172 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 227
           ++  IMY+SGT+G  KGVVLTH      ++ V+LF+     Q+E   + D+VYL+ LP+ 
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254

Query: 228 HI 229
           HI
Sbjct: 255 HI 256

Length = 560

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 468
            PL +   G +CVRG +L SGY+++ +       DGW  TGD+G +L +G + I  R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 469 LIKI 472
           LI I
Sbjct: 463 LIII 466

Length = 579

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 91/459 (19%), Positives = 144/459 (31%), Gaps = 125/459 (27%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+E+ E   +  + L + G   G RV       P+   A      L  +  PL+   GP
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
                I D  E+                        +V++    L    +    +     
Sbjct: 62  EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
                 LH                     +TSGT+G PKGV+  H  +    +     LD
Sbjct: 93  -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126

Query: 209 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 257
              D +   T D        Y    PL +             G ++    G+ +A R   
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173

Query: 258 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317
            L E K T+    P                LR L R   +   +Y L             
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206

Query: 318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 377
                             LR + S G PL+ EV  +        +   +  TET      
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250

Query: 378 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 434
            +P      G+ G      E  + E    G +P+  P   GE+ ++    ++F GY  N 
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310

Query: 435 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           +    S +DGW+ TGD+     +G    + R  ++IK +
Sbjct: 311 ERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)

Query: 334 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 381
           G LR+ ++GG P+  +  E F                 YGL E+    TV  P      D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 382 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 435
           E+     +G    +V       + +   P  G + +     GE+ +RG ++ SGY     
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391

Query: 436 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           +      D WF TGD+G ++  G+V +  R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424

Length = 525

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+   V ++ + LR  G   G R+ +   N    V    AC  +  I VPL      
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
              N+ L  +E+D   +QD + + LL  D  +A R   +    +  A     A++    P
Sbjct: 78  ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 192
                            +PP+  ++  I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156

Length = 488

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 417 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 459
           GE+ VRG  + + YY +P                 D       DGW  TGD+G +  +G 
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445

Query: 460 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           + I DR +++I+ S GE++    LEN    AP + +  V G
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIG 485

Length = 576

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 79/324 (24%)

Query: 169  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
               N+  ++YTSG++G PKGV + H  +A  +  +         ++  +D  L F+  + 
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288

Query: 229  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
              D   E +                           TL+ G   V   + +      EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319

Query: 289  RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 346
                   RI  A +                + L                L + + GG  +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363

Query: 347  ST-EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 396
                 E+  R      L  GYG TE         CG   VC      +       S+Y  
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423

Query: 397  ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------T 448
            + +L  VP +G +       GE+ + G  L  GY++ P LT E  +   F         T
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRT 3475

Query: 449  GDIGQILPNGVVKIIDRKKNLIKI 472
            GD+ +   +GV++ + R  + +KI
Sbjct: 3476 GDLARYRADGVIEYLGRIDHQVKI 3499

Length = 3956

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E   +  + LR  G   G RV ++  NCPQ+         L  + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 140
             +++ L+ A  + +   D+     +    R+   LR  V  TSL        T    + 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176

Query: 141 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 194
                +      + L  L        LP P    +  + YT GT+G PKG   T      
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 195 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 226
           T A     V +   +       D V+LSFLP 
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260

Length = 567

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 23/162 (14%)

Query: 335 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 394
           RLR V++G   L    ++  +      +++GYG+TE C P            GT G +  
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTE-CAPVVSINVPMAAKPGTVGRILP 538

Query: 395 YSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID------- 443
             + RL  VP  E G         G + ++G  + +GY +   P +      +       
Sbjct: 539 GMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEME 589

Query: 444 -GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 484
            GW+ TGDI +    G V+I  R K   KI+ GE V+LE +E
Sbjct: 590 RGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630

Length = 718

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 351 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 404
            EF R   C  +  GYG +E          +     G+ G     V++Y+   L E    
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336

Query: 405 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 460
                G     D   GE V   G   F GYY NP+ T E +  G + +GD+     +G +
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWI 396

Query: 461 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
               R  + +++  GE ++   +E +    P I  + VY 
Sbjct: 397 YFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA 435

Length = 540

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 394
           LR VI   AP   +V+  +       + + YG TE+ G  T    ++ +   GT G  + 
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331

Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 452
            +ELR   V E G  PL     GE+  R  G   F+ Y+  P+   E    G+  +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387

Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS-LKSMLVA 509
            +  +G + + DRK++++ IS G  +    +E V    P + D  V+G  D+     L+A
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMA 446

Query: 510 VVVP 513
           VV P
Sbjct: 447 VVEP 450

Length = 509

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 85
           ++ E+  +V ++ +ALR  G +PG RV  Y  N P+ V AM A  ++  I   C P    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144

Query: 86  LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 128
            G  AV   LD            +D      K      K+ E++   P       L  +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195

Query: 129 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 185
               L++       Q     +S    L     +    L     PF+    I+Y+SGT+G 
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250

Query: 186 PKGVVLTH 193
           PK +V   
Sbjct: 251 PKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY++      Q+  AL A G EPG RVG    N  + +EA    +    +C  +   L P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 89  GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 140
             + +I++HAE      D  F+    + + L+P C + +    M     L A    +   
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157

Query: 141 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 193
                 Q G   Y W  F      +E      Q  ++C   YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 78/372 (20%), Positives = 114/372 (30%), Gaps = 95/372 (25%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 231
           I++TSG++G PKGVV TH    TF + +D     +   +   D  L+  P   +      
Sbjct: 90  ILFTSGSTGPPKGVVYTHR---TFAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144

Query: 232 --RVIEEYFFRRGASV--GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 287
              VI        A++        +  +    +   P LL  V R  E+        L  
Sbjct: 145 VTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE----NGIQLPS 200

Query: 288 LR-----------PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 336
           LR            L RR    L           Y   EA P+A +              
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEALPVASI------------EG 246

Query: 337 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 396
           R V++     S E  E     C    V G               D   +    GP++ + 
Sbjct: 247 REVLAE----SAEPPEAGAGVCVGHPVPGI--------------DVRIIPIDDGPIASWD 288

Query: 397 ---ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 449
              EL   EV             GE+ V G  +   YY  P+ T+ + I      W   G
Sbjct: 289 DDIELPPGEV-------------GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMG 335

Query: 450 DIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVYCVA--PIIEDIWVYGD 501
           D+G     G +    RK + ++ + G                V   A   +       G 
Sbjct: 336 DLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-------GK 388

Query: 502 SLKSMLVAVVVP 513
                 V VV P
Sbjct: 389 PGTQAPVLVVEP 400

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 339 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 395
           V+ GG P    V +      +     +V+ YG++ET G    C  D + + G        
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201

Query: 396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 455
             +R+E+              G + + G TL  GY +NP         GWF T D+G  L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244

Query: 456 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 512
            +GV+ ++ R  + I  + G  V  + +E      P + D  V+G   D L   +VA VV
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVV 303

Query: 513 P 513
            
Sbjct: 304 G 304

Length = 358

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 85
           T+ + Y+   ++ SAL      PG  V +   N P   EA   +    A+ + CV +   
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103

Query: 86  LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 139
           L    + F+L+H++ + V V  +      +  ++L+   +S+ +  +++     T + K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 140 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 198
           +    G     +++FL  G   E    PP   +    + YTSGT+  PKGVVL H     
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222

Query: 199 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
                 L        M    VYL  LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247

Length = 567

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)

Query: 30  YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 89
           Y+ +          L A G +PG RV +       +VEA  AC    L+ VPL     P 
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106

Query: 90  AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 144
            + F    + I        +++ +L+    SAQ        T    E             
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150

Query: 145 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 204
            +   S   F       ++ +  P P +I  + Y+SG++  P+GV++TH  +   +  + 
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209

Query: 205 LFLDQFEDKMTV--DDVYLSFLPLAH 228
                  D + V   D  +S+LP  H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+Y+EV ++   LR  G   G RV IY    P+ V AM AC  +  I   ++     
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 89  GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 138
             +   +D A+        F     + V  K LL      +Q    +V++    L   Q 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190

Query: 139 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 190
              ++ G +   W E +      +   +   P    +   I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 36/191 (18%)

Query: 334 GRLRLVISGGAP-----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 388
            + R ++ GGAP     L    +  LR+         YG+TET        PD+      
Sbjct: 230 AQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETASQIATLKPDDF----L 279

Query: 389 AGPVSVYSEL---RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 445
           AG  S    L   ++          +     G + ++ ++L  GYY  P +  +S   G 
Sbjct: 280 AGNNSSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYY--PQI-LDS--QGI 325

Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL 503
           F T D+G +   G + I+ R    I I+ GE V    +E       +++D+ V G  D  
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLVQDVCVLGLPDPH 384

Query: 504 -KSMLVAVVVP 513
              ++ A+ VP
Sbjct: 385 WGEVVTAIYVP 395

Length = 452

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)

Query: 319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 378
             DL  +         RLR  +S G PL+ EV E ++      +  GYG TET       
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236

Query: 379 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 424
                 M+G      V   S  R    P  GY                GE+ +    R  
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288

Query: 425 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
            L  GY  +P+ T  +   G++ TGD      +G +  + R  ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 167 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 224
             +P +   I++TSG+ G PKGVVL+H  +   +       DQ    + +  +DV L  L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193

Query: 225 PLAH 228
           PL H
Sbjct: 194 PLFH 197

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y E+ EE+ +  +   + G   G +V ++  NCP+++        +  I VP+   L  
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
               +IL +++   +    +            A  LR  +C T +     +         
Sbjct: 99  EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
            S+ +             P    +   I++TSGT+  PKGVV+TH  +         F  
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202

Query: 209 QFED---KMTVDDVYLSFLPLAHI 229
            +      +  DDVYL+ +P  HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+     ++   LRA G   G  V I   N P++ E   A     L   P       
Sbjct: 13  TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
             +N+ L  AEI ++ V D   K L+ S           +            + V   + 
Sbjct: 66  --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119

Query: 148 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 204
            + S++E L       +            ++Y+SGT+G PKG+   L          G+ 
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174

Query: 205 LFLDQFEDKMTVDDVYLSFLPLAH 228
           L L  F      D VYLS  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 69/327 (21%), Positives = 115/327 (35%), Gaps = 75/327 (22%)

Query: 165  ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 224
             +   P N+  ++YTSG++G PKG    H  +   V+ +    + ++  ++  DV L F 
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766

Query: 225  PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 278
              A   D  + E F+    GA +       H D   L   +   + T L  VP + +++ 
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 279  EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 338
            + + + +E    LRR +                   EA  +    A R    RL      
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861

Query: 339  VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 393
                                   L   YG TET              +    V    P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899

Query: 394  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF------- 446
              S   L+       +P+     GE+ + G  L  GY   P LT E  +   F       
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRL 1955

Query: 447  -HTGDIGQILPNGVVKIIDRKKNLIKI 472
              TGD+ +   +GV++ + R  + +KI
Sbjct: 1956 YRTGDLARYRADGVIEYLGRIDHQVKI 1982

Length = 3956

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 48/158 (30%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--------EMCMVG 387
           LRLV  GG+        F+  T      Q YGL+ET G T +C P         E   VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345

Query: 388 TAGP-VSVYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESI 441
              P V VY           G  P           G + ++      GY+ NP+ T E +
Sbjct: 346 RPYPGVDVYLA------ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL 399

Query: 442 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
           IDGW +TGD+ +   +G   I  R   +I I  G  +A
Sbjct: 400 IDGWVNTGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436

Length = 540

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 25/191 (13%)

Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 389
            LR + S GA  S EV +  L +     LV   G +ET   G +            T   
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192

Query: 390 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 444
             GP +V  +    EVP            G +   G+    GYYK+P+ T ++   IDG 
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245

Query: 445 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--- 500
            +   GD  ++  +G + ++ R    I  + GE V  E +E      P + D  V G   
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPD 304

Query: 501 DSLKSMLVAVV 511
           +     +VAVV
Sbjct: 305 ERWGQRVVAVV 315

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
          TY+E+++   +  + LRA G  PG RV +   + P+ V A  AC     + V L   L P
Sbjct: 12 TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 89 GAVNFILDHAE 99
            +  ILD + 
Sbjct: 72 QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 45.6 bits (109), Expect = 6e-05
 Identities = 58/211 (27%), Positives = 78/211 (36%), Gaps = 24/211 (11%)

Query: 316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 372
           A PL D  A           L  + SGGA  S  V E  L +     L    G +ET   
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337

Query: 373 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 429
           G  TV            T GP   V  E      P            G +  RG  +  G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389

Query: 430 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 485
           YYK+P+ T E+   IDG  +   GD  ++  +G + ++ R    I  + GE V  E +E 
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448

Query: 486 VYCVAPIIEDIWVYG---DSLKSMLVAVVVP 513
                P + D  V G   +     +VAVV  
Sbjct: 449 ALKAHPDVADALVVGVPDERWGQEVVAVVQL 479

Length = 533

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 45.7 bits (109), Expect = 6e-05
 Identities = 104/496 (20%), Positives = 160/496 (32%), Gaps = 147/496 (29%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E+   +   L A G   G  V +   N   +V A+ A   +    + L      
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             +  +     +    V D +  +LLS       RLR                       
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185

Query: 149 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 206
            + +    L   +    LP  P+P  I  ++ TSGT+G PKG      +           
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231

Query: 207 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLNALR 256
                             PLA +L RV     FR G +           G+ H  L    
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLA--- 269

Query: 257 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMG 310
              M L  T+      V                   RR FD       + K+K   +   
Sbjct: 270 ---MALGSTV------VL------------------RRRFDPEATLEDIAKHKATAL--- 299

Query: 311 YKQREASP-----LADLLAFRKVKARLG-GRLRLVISGGAPLSTEV-----EEFLRVTCC 359
                  P     + DL    +V A+     L+++   G+ LS E+     E F  V   
Sbjct: 300 ----VVVPVMLSRILDLGP--EVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY- 352

Query: 360 AFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD----- 413
                 YG TE     T+  P+++    GT G       +++          LD+     
Sbjct: 353 ----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNEV 397

Query: 414 PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 471
           P    G + V     F GY    D   + IIDG   +GD+G    +G++ +  R  ++I 
Sbjct: 398 PRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI- 453

Query: 472 ISQGEYVALEYLENVY 487
           +S G        ENV+
Sbjct: 454 VSGG--------ENVF 461

Length = 549

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.9 bits (107), Expect = 9e-05
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 27/191 (14%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 395
           LR+ I   AP   EV+  +       + + Y  +E  G T +   D +   G+ G  +V 
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322

Query: 396 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 445
            E+R+      E+P  E+G  Y  +D  P           F  Y+ +P+ T  +    GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370

Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 502
              GD+G +  +G + + DRK ++I IS G  +  + +EN+    P + D+ V+G   + 
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429

Query: 503 LKSMLVAVVVP 513
           +   + AVV P
Sbjct: 430 MGERVKAVVQP 440

Length = 502

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 45.2 bits (108), Expect = 9e-05
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 85
           ++ E+  +V  + +ALRA G  PG RV  Y  N P+ V AM A  +L  I   C P +  
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173

Query: 86  LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 128
            G   V   LD   +I        D      K      KV EL +  P   S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225

Query: 129 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 186
            +          A         W++FL   +  E+E   P PF+  +  I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278

Query: 187 KGVVLTH 193
           K +V  H
Sbjct: 279 KCIVHGH 285

Length = 655

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 106/500 (21%), Positives = 172/500 (34%), Gaps = 135/500 (27%)

Query: 26  VWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQ----WVEAMEACNALSLICV 80
            W TY+++ +   +I   L    G  PG RV +  AN P     W+  ++A      I V
Sbjct: 60  TW-TYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKA----GAIVV 114

Query: 81  PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 140
                L    +  I+D A I                           +C   LTA     
Sbjct: 115 TTMPLLRAKELTTIVDKARITHA------------------------LCDKRLTAAD--- 147

Query: 141 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 200
                                          ++  I +TSGT+G PKG +  H  I   +
Sbjct: 148 -------------------------------DVALIGFTSGTTGLPKGTMHFHRDI---L 173

Query: 201 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDD 258
           +  D F  +   + T DDV++   PLA         + F  G  V +    G    L   
Sbjct: 174 AICDAF-PRHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFGASAVL--- 220

Query: 259 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 318
                                     LE+  P    +  A+ +++   +         +P
Sbjct: 221 --------------------------LEQATP--PLLLKAIQEHRATILF-------TAP 245

Query: 319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 377
            A      KVKA     LR  +S G  L  +V +++   T    ++ G G TE      +
Sbjct: 246 TAYRAMLIKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFI 303

Query: 378 CFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
              +E    G  G PV  Y    +++      + +     G + VRG T     Y + + 
Sbjct: 304 SANEENAKPGATGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDER 357

Query: 437 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 496
            +E + DGW  TGDI +   +G    + R  ++I +S G  +A   +E+     P + + 
Sbjct: 358 QQEYVRDGWNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDALLTHPDVAEC 416

Query: 497 WVYG--DSLKSMLV-AVVVP 513
            V G  D  +  +V A +V 
Sbjct: 417 AVIGVPDEERGQIVCAHIVL 436

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y E ++ +LQ    L A G   G  V +   N   ++E   A + L  + +P+   L  
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             V +IL  A    + V ++                     F ++ A +    V      
Sbjct: 89  DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 197
            +    L  G +         P ++  +MYTSGT+  PKGV+ ++  + 
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175

Length = 497

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 167 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 226
             +P +  TI+++SG+ G+PKGV+L+H  I + +  +          +  DDV LS LP 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832

Query: 227 AH 228
            H
Sbjct: 833 FH 834

Length = 1146

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 417 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 476
           G V V+    F GY     L RE   DGW    D+G     G + I+ R+KN+I +  G 
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGI 392

Query: 477 YVALEYLENVYCVAPIIEDIWVYG 500
            +  E +E+V    P +++I V G
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 165 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 224
            +  QP +   I++TSG+ G PKGVV +H+++   V  +    D      T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413

Query: 225 PLAH 228
           PL H
Sbjct: 414 PLFH 417

Length = 718

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY+E+ E   ++    R+ G + G  V I+  N  +++E   A     L    +   L P
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 89  GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 146
               +I+D   A           V   L   C    R R+++                G 
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135

Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 200
             Y+            +  LP  P     + T M Y+SGT+G PKG+   L  +   T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 201 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
                    +      D VYLS  PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY++++ EV    SALRA G   G RV IY     + V AM AC  +  I   ++     
Sbjct: 85  TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144

Query: 89  GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 140
            ++   +D A    +   D      KV   K LL      AQ     V           +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193

Query: 141 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 189
            V  G+ P          Y+     H      +E L  +      I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 4e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
          +Y E+ E   Q+ + LRA G  PG RVG+        V A+ A        VPL  +   
Sbjct: 14 SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73

Query: 89 GAVNFILDHAE 99
            + ++L+ AE
Sbjct: 74 ERLQYMLEDAE 84

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 28  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
           +++ E+ +   +    L A G  PG  V +   N   + EA  A   L    VP      
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65

Query: 88  PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 145
              VN+     EI ++  +D   + L++  D        +    T L+     E+A    
Sbjct: 66  ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121

Query: 146 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 189
           I P           W+ +L   +  +   +P QP ++   +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 383
           LR VIS GAP+   V E  R    A L         YG TE   P +     E+      
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344

Query: 384 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 419
                   C VG             +  P+  + + LRL   E+             GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390

Query: 420 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 452
            V G  +   YY  P+ TR + I DG    W   GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 387
           L+L+  GGA LS  +    R+     C  L Q +G+ E      V +      DE     
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354

Query: 388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 446
              P+S   E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411

Query: 447 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 485
            +GD+  I P+G + ++ R+K+ I    GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)

Query: 336 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 377
           LR  ++G  P+   +VE+         LR      ++  YG+ E         CG    V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334

Query: 378 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 423
                D +  +  A P +                L +  V E G   L     G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393

Query: 424 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 470
           +++  GY     LT +  I     DGW  TGD+G +   G V +  R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 30  TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             +N  L  AEI  +  + +    +++ D +    +        + A      V  G  P
Sbjct: 81  ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 207
            S    +        E  P +P     + YTSGT+G PKG V+      + V    LF+ 
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185

Query: 208 DQFEDKMTVDDVYLSFLPLAHIL 230
            Q   +    +V L  +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
              V  T++++   + Q+ +     G   G  V + G N P+ + A  A        +PL
Sbjct: 25  NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83

Query: 83  YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 142
              L    +  +L    +DF  V        L  +            F++LT+       
Sbjct: 84  NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118

Query: 143 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 201
                       LHL  V     +  QP  + T+  TSG++G PK  V T +  A   S 
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164

Query: 202 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 229
            GV L L  F    T  D +L  LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 395
           L + I   AP   +V+E +       + + Y  TE  G T     + +   GT G   ++
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRA-MF 335

Query: 396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--GWFHTGDIGQ 453
            +L + +  +    P  +P  G +   G   F  Y  +P  T E+      W   GDIG 
Sbjct: 336 GDLHILD-DDGAELPPGEP--GTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGY 391

Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 510
           +  +G + + DR   +I IS G  +  +  EN+    P + D  V+G   + L   + AV
Sbjct: 392 VDEDGYLYLTDRAAFMI-ISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAV 450

Query: 511 VVP 513
           V P
Sbjct: 451 VQP 453

Length = 511

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 85
           T+ E+  +V  + +ALRA G  PG RV  Y  N PQ V AM A  ++  I   C P +  
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173

Query: 86  LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 134
                   +LD     E   +F  D           ++ ++   +    LR +V    L 
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229

Query: 135 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 190
             + E     G      ++F    +  E+      PF +   I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 27/185 (14%)

Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
            LR +I  G  L  ++ +EF        +V+ YG TE      +   +     G  G + 
Sbjct: 197 PLRKII--GNGLRPDIWDEFKERFGVPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLP 250

Query: 394 VYSELRLEEVPEMGYSPLDDPP--C--------GEVCVRGKTL--FSGYYKNPDLTRESI 441
             + + + +       P+ D    C        G +         F GY  +    ++ +
Sbjct: 251 -PAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKIL 309

Query: 442 I------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
                  D +F+TGD+ +    G    +DR  +  +  +GE V+   +E V    P +E+
Sbjct: 310 RDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEE 368

Query: 496 IWVYG 500
             VYG
Sbjct: 369 ANVYG 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 222
           ++YTSG++G PKGV ++H  +  F+  +          +   D  L+             
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152

Query: 223 FLPL 226
            LPL
Sbjct: 153 LLPL 156

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+E+ E+V+ + + LR  G +PG  V +     P+ V        L+L    L+  +  
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 142
           GA    LD                   PD     RL++M          +   +    A 
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571

Query: 143 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 196
              +    ++  L       +     QP +   I++TSG++G PKGV++    I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623

Length = 1296

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 72
           TY+E+Y EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)

Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 395
           LR VI   AP   +V+  +       + + Y  TE  G T +  PD +   G+ G  SV 
Sbjct: 272 LRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVL 330

Query: 396 SELRLEEVPEMGYSPLDDPPCGEVCV----RGKTLFSGYYKNPDLTRESIIDG---WFHT 448
            +L + +         ++ P G +      R +  F  Y  +P+ T  +       W   
Sbjct: 331 GDLHICD------DDGNELPAGRIGTVYFERDRLPFR-YLNDPEKTAAAQHPAHPFWTTV 383

Query: 449 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           GD+G +  +G + + DRK  +I IS G  +  +  EN   + P + D+ V G
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMI-ISGGVNIYPQETENALTMHPAVHDVAVIG 434

Length = 501

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 410 PLDDPPCGEVCVR----GKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 458
           P+ +P  GE+  R     + LF GY KN D T   ++       D W+ TGD+ +   +G
Sbjct: 295 PVGEP--GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADG 352

Query: 459 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
               +DR  +  +  + E V+   + +V    P + +  VYG
Sbjct: 353 RWYFLDRLGDTFRW-KSENVSTGEVADVLGAIPSVAEANVYG 393

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 44  LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 90
            RA GA      +PG RV I     PQ ++       A+ A      I VPL+D   PG 
Sbjct: 65  NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117

Query: 91  VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 150
           V  +  HA +D     D     +L+    SA+ +R    F +  A+++   +     P  
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167

Query: 151 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 209
                    V    + P      I  + YTSG++  P GV +TH  + T V  V   L+ 
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218

Query: 210 FEDKMTVDDVYLSFLPLAH 228
            E    V     S+LP  H
Sbjct: 219 QEGDRGV-----SWLPFFH 232

Length = 631

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 28  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
            T+ E+ EE  +  + L+  G   G RV +     P+    +  C  L  + +P    LG
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 88  PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 144
           P  + + L+ A    +                       ++ FTS T    +M + T
Sbjct: 61  PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+++   V  +   L  SG  PG RV +   +  ++V A+ A +   L+ VPL D   P
Sbjct: 45  SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
            A   +   A    V + D        P  R+    R      ++  +         +  
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 203
                  HL    E       P  +      IM+T GT+G PK V  TH  IA+ V  +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208

Length = 534

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
          T+ ++ +   ++ +ALR  G E G RVG+Y    P+   A  A   L  + VPL    GP
Sbjct: 8  TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 89 GAVNFILDHAE 99
           AV   L  + 
Sbjct: 68 DAVEHRLRDSG 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 173 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
               +YTSGT+G PK  +++H     A  V G    L         DDV    LPL H
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+++      I +AL+A  A  G R  +   + P +V A   C    +I VP Y    P
Sbjct: 42  SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97

Query: 89  GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 140
            +           I+  AE   +         LL  +  +A     ++C  +L     E 
Sbjct: 98  ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156

Query: 141 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 199
                    +W E             P  QP +I  + YTSG++  PKGV ++H      
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191

Query: 200 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 228
           V+   L    F   +  DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 72
          TY E+ E   ++ + L A G   G  V +YG   P    A+ AC
Sbjct: 18 TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 85
           T  E+  +V ++ +AL A G E G  + I   + P  V A+    A+ L   + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266

Query: 86  LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 141
             P  +   L  ++   +F QD  V   K + L      A+  + +V    L A+ K + 
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322

Query: 142 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 195
           V+      SWD+FL     L + +E + +  QP    T I+++SGT+G+PK +  T  T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380

Length = 728

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.003
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 72
           TY+E++ EV +  +AL++ G + G RV IY    P+   AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 23/76 (30%), Positives = 37/76 (48%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y E+ E+  ++ + L   G +PG RV       P+ V A+ A   +  I VPL+   GP
Sbjct: 2   SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGP 61

Query: 89  GAVNFILDHAEIDFVF 104
            A+ + L H+    V 
Sbjct: 62  KAIEYRLGHSGAKVVV 77

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
            Y E+     ++  AL   G  P   VG+      + V A+ A        VPL D   P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
                    AE     ++D  V+ LLS           +     L A  + + +    +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 200
            +W E    G   E       P N+  ++YTSG++G PKG    H  ++  +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%)

Query: 336  LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 393
            +R+ I+GG  L+ E ++   +          YG TET      C   E    G A  P+ 
Sbjct: 2450 VRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIG 2509

Query: 394  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------DG--W 445
                 R+  + +   + +     GE+ V G  L  GY+  P LT E  +      DG   
Sbjct: 2510 RVVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRL 2569

Query: 446  FHTGDIGQILPNGVVKIIDRKKNLIKI 472
            + TGD+ ++  +G+V+ + R  + +KI
Sbjct: 2570 YRTGDLVRLRADGLVEYVGRIDHQVKI 2596

Length = 4334

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 23/170 (13%)

Query: 366 YGLTE-TCGPTTVCFPDEMCM------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE 418
           YG TE T   T+V    E+        +G A P     ++ L  + E G  PL +   GE
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKP-----DMNLFIMDEEG-EPLPEGEKGE 344

Query: 419 VCVRGKTLFSGYYKNPDLTRESI--IDGW--FHTGDIGQILPNGVVKIIDRKKNLIKISQ 474
           + + G ++  GY  NP+ T E+    +G   + TGD G I  +G +    R    IK+  
Sbjct: 345 IVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKL-H 402

Query: 475 GEYVALEYLENVYCVAPIIED---IWVYGDSLK-SMLVAVVVPCEEDTKK 520
           G  + LE +E     +  IE    +  Y    K   L+A +VP  ED +K
Sbjct: 403 GYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEK 452

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 72
           TY+E++ EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 90  TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	611
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.96
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.93
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.93
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.82
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.78
PRK09188	365	serine/threonine protein kinase; Provisional	99.77
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.93
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.74
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.56
PLN02249	597	indole-3-acetic acid-amido synthetase	98.07
PLN02247	606	indole-3-acetic acid-amido synthetase	97.93
PLN02620	612	indole-3-acetic acid-amido synthetase	97.82
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	97.1
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.27
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	84.14
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	82.99
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	82.7
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	81.48
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	81.42

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=3.2e-84  Score=664.57  Aligned_cols=601  Identities=48%  Similarity=0.799  Sum_probs=546.0

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .+..+|+.+++-.....+ ..++|+++||.|..+++..++..|+..|+++++.|+|++-|++||++..+||...|.+.+|
T Consensus        84 ~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~Vp  162 (691)
T KOG1256|consen   84 SVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVP  162 (691)
T ss_pred             chhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEee
Confidence            567899999999884323 5788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEc-chhHHHHhccccc-cccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQ-DKKVKELLSPDCR-SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  159 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~-~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (611)
                      |...++++.+.++++.+.+.++|++ ++....+.+.... ..+.++.++.++.............+....+|+++...+.
T Consensus       163 lYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~  242 (691)
T KOG1256|consen  163 LYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGK  242 (691)
T ss_pred             cccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcc
Confidence            9999999999999999999999999 5555666665554 3688999999999988877777788888999999999997


Q ss_pred             ccCCcC-CCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccC-CCCCCcEEEEecchhhHHHHHHHHH
Q 007257          160 VNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED-KMTVDDVYLSFLPLAHILDRVIEEY  237 (611)
Q Consensus       160 ~~~~~~-~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~~  237 (611)
                      .....+ .+..|+|.|.|.|||||||.||||++||+|+.+.+..+......... .....|++++.+|+.|++.....++
T Consensus       243 ~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~  322 (691)
T KOG1256|consen  243 KNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELY  322 (691)
T ss_pred             cccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHh
Confidence            666555 48899999999999999999999999999999976543322221111 2234799999999999999999888


Q ss_pred             HhhcCceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-HHHhhcCCCCCc
Q 007257          238 FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREA  316 (611)
Q Consensus       238 ~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  316 (611)
                      .+..|+++.+.++|+..+.+.+++.+||.+.++|.+++++-+.+.+...+...+++.+++.++..+. ..+..|-... .
T Consensus       323 ~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~  401 (691)
T KOG1256|consen  323 TFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS-R  401 (691)
T ss_pred             HhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc-c
Confidence            8899999999999999999999999999999999999999999999999999999999999998877 4455553322 7


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCe
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS  396 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~  396 (611)
                      .+++|++.+.+++..+++++|.+++|++|+++++...++..+|++|+++||+|||++.++...+++. ..+++|.|+|++
T Consensus       402 ~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~-~lgsvG~p~p~~  480 (691)
T KOG1256|consen  402 DRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDN-VLGSVGPPVPGN  480 (691)
T ss_pred             chHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCC-CCCCcCCcccCc
Confidence            9999999999999999999999999999999999999999999999999999999977777777666 569999999999


Q ss_pred             eEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCc
Q 007257          397 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG  475 (611)
Q Consensus       397 ~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G  475 (611)
                      +++++|+++.+....+.  .|||+|||++++.||++||+.|.+++ .|||++|||+|+++++|.+.|.||.++++|+++|
T Consensus       481 ~vKL~dvpe~ny~a~~~--~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqG  558 (691)
T KOG1256|consen  481 EVKLVDVPEMNYDADGS--KGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQG  558 (691)
T ss_pred             eEEEechHHhCcCcCCC--cceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCC
Confidence            99999998888776654  79999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             eecCcHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 007257          476 EYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  555 (611)
Q Consensus       476 ~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  555 (611)
                      ++|.|+.||+++.+.+.|.+.+|.|.+.+..++|+|+++.+..+.|...++...++.++|.+..+++.+..++.+..+.+
T Consensus       559 EyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~  638 (691)
T KOG1256|consen  559 EYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKEN  638 (691)
T ss_pred             CccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999888899999999999999999977778999999999999999999999998888


Q ss_pred             CCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 007257          556 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  607 (611)
Q Consensus       556 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~~  607 (611)
                      .|..+...+.|++.+.+|+++..-.||+-|++|..|.++|+++||+||+..+
T Consensus       639 ~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~~~~  690 (691)
T KOG1256|consen  639 GLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYKEIK  690 (691)
T ss_pred             hccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999754

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1e-83  Score=709.75  Aligned_cols=605  Identities=50%  Similarity=0.913  Sum_probs=495.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+.+....++..+.++++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|||+++|++++|
T Consensus        54 ~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vp  133 (666)
T PLN02614         54 SVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVP  133 (666)
T ss_pred             HHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEE
Confidence            57889999999864100222345678999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++|++++++++|++++....+..........++.++.+++.................+++++.......
T Consensus       134 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (666)
T PLN02614        134 LYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGK  213 (666)
T ss_pred             ecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccC
Confidence            99999999999999999999999988765544332222222355666665432111000111122345677776543222


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++|+++|+|||||||.||||++||+++...+......+......+..+|++++.+|++|.++......++..
T Consensus       214 ~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~  293 (666)
T PLN02614        214 QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQH  293 (666)
T ss_pred             CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHh
Confidence            22223346899999999999999999999999999887665433221111146788999999999999998766667889


Q ss_pred             CceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 007257          242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  321 (611)
Q Consensus       242 G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (611)
                      |+++++.+.++..+++.+++++||+++++|.+++.+...........+.+++..+..+...+...+..+.......++.+
T Consensus       294 G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  373 (666)
T PLN02614        294 GAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCD  373 (666)
T ss_pred             CCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHH
Confidence            99999887799999999999999999999999999988766655555556666666665555555555544455677888


Q ss_pred             HHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEE
Q 007257          322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  400 (611)
Q Consensus       322 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  400 (611)
                      .+.+++.+..++++||.+++||+++++.+. .|.+.+ ++++++.||+||+++..+...+......+++|+|+|+++++|
T Consensus       374 ~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~-~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki  452 (666)
T PLN02614        374 KLVFNKVKQGLGGNVRIILSGAAPLASHVE-SFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRL  452 (666)
T ss_pred             HHHHHHHHHHhCCcEEEEEEcCCCCCHHHH-HHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEE
Confidence            888888888888999999999999998765 455555 589999999999987655544433334589999999999999


Q ss_pred             eecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCc
Q 007257          401 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL  480 (611)
Q Consensus       401 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~  480 (611)
                      +++++++..+++.|+.|||+|+||+++.|||++|+.|.+.|.+|||+|||+|++|+||+|++.||.||+|++++|++|+|
T Consensus       453 ~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p  532 (666)
T PLN02614        453 ESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAV  532 (666)
T ss_pred             eeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecH
Confidence            98555555667788999999999999999999999999999999999999999999999999999999999768999999


Q ss_pred             HHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCc
Q 007257          481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGF  560 (611)
Q Consensus       481 ~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  560 (611)
                      .+||++|.+||+|.+|+|+|.+++..++|+|+++.+....|...++...+..+.+.++++.+.+.+.+.+...++.|++|
T Consensus       533 ~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  612 (666)
T PLN02614        533 ENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGF  612 (666)
T ss_pred             HHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            99999999999999999999886779999999999999999888877667888899999999999999988777889999


Q ss_pred             ceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 007257          561 EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  607 (611)
Q Consensus       561 ~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~~  607 (611)
                      .++++|.+++++|+++....|+++|++|..+.+.|+++|++||++..
T Consensus       613 e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly~~~~  659 (666)
T PLN02614        613 EIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTTN  659 (666)
T ss_pred             ceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999998644

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1e-81  Score=694.66  Aligned_cols=605  Identities=51%  Similarity=0.901  Sum_probs=497.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++||++|+.+....++..+.++++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|||+++|++++|
T Consensus        52 ~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vp  131 (660)
T PLN02861         52 AVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVP  131 (660)
T ss_pred             HHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEE
Confidence            57889999999764211334466789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++|++++++++|+++.....+..........++.++.+++.................+|+++...... 
T Consensus       132 l~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  210 (660)
T PLN02861        132 LYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-  210 (660)
T ss_pred             ecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-
Confidence            9999999999999999999999998776554433222111245667776543221111111112334577777654321 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      .....+..++++++|+|||||||.||||++||.++...+......+......+..+|++++.+|++|+++....+.+++.
T Consensus       211 ~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~  290 (660)
T PLN02861        211 DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISK  290 (660)
T ss_pred             cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHh
Confidence            11223456899999999999999999999999999987765544331101124678999999999999998776678999


Q ss_pred             CceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 007257          242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  321 (611)
Q Consensus       242 G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (611)
                      |+++++...++..+++.|++++||+++++|.+++.+.+...........+++.+++.+...+...+..+.......+..+
T Consensus       291 G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~  370 (660)
T PLN02861        291 GASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLD  370 (660)
T ss_pred             CCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHH
Confidence            99999887799999999999999999999999999988777777777777888888777766666655544455567788


Q ss_pred             HHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC-CceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEE
Q 007257          322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  400 (611)
Q Consensus       322 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  400 (611)
                      .+.++++++.+++++|.+++||+++++++.+ |.+.++ .+++++||+||+++.++..........+++|+|++++++++
T Consensus       371 ~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i  449 (660)
T PLN02861        371 RLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARL  449 (660)
T ss_pred             HHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEE
Confidence            8889999999989999999999999999865 445555 47999999999987665544333334589999999999999


Q ss_pred             eecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCc
Q 007257          401 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL  480 (611)
Q Consensus       401 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~  480 (611)
                      ++.++.+....+.++.|||+|+||+++.||+++++.|.+.|.+|||+|||+|++|+||+|++.||.||+|++++|++|+|
T Consensus       450 ~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p  529 (660)
T PLN02861        450 ESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAV  529 (660)
T ss_pred             EEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcH
Confidence            98544443333455679999999999999999999999999999999999999999999999999999999768999999


Q ss_pred             HHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCc
Q 007257          481 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGF  560 (611)
Q Consensus       481 ~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  560 (611)
                      .+||++|.+||.|.+|+|+|.++.+.++|+|+++.+....|...++...++.+++.+.+....+.+++.+.+.+..|+.+
T Consensus       530 ~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  609 (660)
T PLN02861        530 ENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGF  609 (660)
T ss_pred             HHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            99999999999999999999886679999999998887888777655556788888888999999999999887789999


Q ss_pred             ceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhcC
Q 007257          561 EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP  608 (611)
Q Consensus       561 ~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~~~  608 (611)
                      .+++.+.+.+++|+++..++|+++|++|+++++.|+++|+++|++...
T Consensus       610 e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY~~~~~  657 (660)
T PLN02861        610 EMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLYSEAKG  657 (660)
T ss_pred             ceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999997543

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.3e-81  Score=689.13  Aligned_cols=608  Identities=79%  Similarity=1.306  Sum_probs=513.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+.+....++..+.++++||+|+.+++.++|.+|.+.|+++||+|+|+++|+++|++++|||+++|++++|
T Consensus        51 ~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vp  130 (660)
T PLN02430         51 SVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVP  130 (660)
T ss_pred             HHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEE
Confidence            46789999999765211233456778999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++++++.++|+.++++++|+++..............+.++.++.+++.................+|+++...+...
T Consensus       131 l~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (660)
T PLN02430        131 LYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKEN  210 (660)
T ss_pred             eccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccC
Confidence            99999999999999999999999987654433322222234566777776533211111111223456788877655332


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      .....+..++++++++|||||||.||||++||+++...+.............+..+|++++.+|++|.++....+.++..
T Consensus       211 ~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~  290 (660)
T PLN02430        211 PSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRK  290 (660)
T ss_pred             CCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHc
Confidence            22233456899999999999999999999999999887765433221111246788999999999999998877777899


Q ss_pred             CceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 007257          242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  321 (611)
Q Consensus       242 G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (611)
                      |+++++...++..+++.+++++||++.++|.+++.+.+..........+.++.++..+...+...+..+.......++++
T Consensus       291 G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  370 (660)
T PLN02430        291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMAD  370 (660)
T ss_pred             CCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Confidence            99998887788999999999999999999999999998888777777888889999998888888877766566678889


Q ss_pred             HHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEe
Q 007257          322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE  401 (611)
Q Consensus       322 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~  401 (611)
                      .+.+++.+..+++++|.+++||+++++++.++++...+++++++||+||+++..+...+......+++|.|.++++++++
T Consensus       371 ~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~  450 (660)
T PLN02430        371 FLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLE  450 (660)
T ss_pred             HHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEE
Confidence            99999999999999999999999999998777765545789999999999987776655444446899999999999999


Q ss_pred             ecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcH
Q 007257          402 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE  481 (611)
Q Consensus       402 ~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~  481 (611)
                      ++++.+..+.+.++.|||+|+||+++.||+++++.|.+.|.+|||+|||+|++|+||++++.||.+|+|++++|++|+|.
T Consensus       451 d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~  530 (660)
T PLN02430        451 EVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALE  530 (660)
T ss_pred             EcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchH
Confidence            86666656666667899999999999999999999999999999999999999999999999999999998789999999


Q ss_pred             HHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcc
Q 007257          482 YLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFE  561 (611)
Q Consensus       482 ~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~  561 (611)
                      +||++|.+||.|.+|+|+|....+.++|+|+++.+....|....+...+..++++++++.+.+.+.+.+.+.+..|+.|.
T Consensus       531 ~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e  610 (660)
T PLN02430        531 YLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFE  610 (660)
T ss_pred             HHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCce
Confidence            99999999999999999997656799999999999888888877766678888999999999999999998777899999


Q ss_pred             eeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhcCC
Q 007257          562 HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPG  609 (611)
Q Consensus       562 ~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~~~~  609 (611)
                      ++++|++++++|++++...|+++|++|+.+.+.|+++|++||++..+.
T Consensus       611 ~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~~~~~  658 (660)
T PLN02430        611 YIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRKLAEK  658 (660)
T ss_pred             eeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999999999999999999999987653

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.2e-81  Score=693.32  Aligned_cols=595  Identities=41%  Similarity=0.696  Sum_probs=499.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+.+....++..+.++.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||+++|++++|
T Consensus        53 ~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vp  132 (651)
T PLN02736         53 AVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVP  132 (651)
T ss_pred             HHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEE
Confidence            57889999999643100344456789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++|+.++++++|++.+....+..... ..+.++.++..+..................+|+++.......
T Consensus       133 l~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (651)
T PLN02736        133 LYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSS  211 (651)
T ss_pred             eecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccC
Confidence            9999999999999999999999999876655433222 335566666665332211111111233456788877654332


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      .....+..++++++|+|||||||.||||++||+++...+......+     ++..+|++++.+|++|.+++...+.++..
T Consensus       212 ~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~  286 (651)
T PLN02736        212 PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHY  286 (651)
T ss_pred             CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHc
Confidence            2233445789999999999999999999999999998887766555     67889999999999999999888888999


Q ss_pred             CceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 007257          242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  321 (611)
Q Consensus       242 G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (611)
                      |+++++.+.++..+++.+++++||+++++|.+++.+.+.........+.+++..+..+...+...+..+   ..+.+.++
T Consensus       287 G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  363 (651)
T PLN02736        287 GVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWD  363 (651)
T ss_pred             CCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcC---CCCCchHH
Confidence            999999888899999999999999999999999999988777777777788888877766655555443   23345667


Q ss_pred             HHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEe
Q 007257          322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE  401 (611)
Q Consensus       322 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~  401 (611)
                      .+.+++.+..+++++|.+++||+++++++.+++.+.+|+++++.||+||+++..+...... ...+++|.|+|+++++++
T Consensus       364 ~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~  442 (651)
T PLN02736        364 RLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLV  442 (651)
T ss_pred             HHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCC-CCCCccCCccCceEEEEE
Confidence            7788888888888999999999999999999999888999999999999987766554433 345899999999999999


Q ss_pred             ecCCCCC-CCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCceecC
Q 007257          402 EVPEMGY-SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  479 (611)
Q Consensus       402 ~~~~~~~-~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~  479 (611)
                      +.+++.. ....+++.|||+|+||+++.||+++++.+++.| .+|||+|||+|++|+||++++.||.||+|++++|++|+
T Consensus       443 d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~  522 (651)
T PLN02736        443 DVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIA  522 (651)
T ss_pred             EccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEec
Confidence            8433211 111223469999999999999999999999999 68999999999999999999999999999976899999


Q ss_pred             cHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCC-CCcHHHHhccHHHHHHHHHHHHHHHHhCCCC
Q 007257          480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLR  558 (611)
Q Consensus       480 ~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  558 (611)
                      |.+||++|.+||+|.+|+|+|....+.++|+|+++.+....|.+..+. ..++.+++.++++.+.+.+.|...+++.+|+
T Consensus       523 p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  602 (651)
T PLN02736        523 PEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLR  602 (651)
T ss_pred             hHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999765679999999999888888777666 5789999999999999999999998878899


Q ss_pred             CcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 007257          559 GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  606 (611)
Q Consensus       559 ~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~  606 (611)
                      .|++|++|++++++|++++.++|++||++|+++++.|+++|++||...
T Consensus       603 ~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~~y~~~  650 (651)
T PLN02736        603 GFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAEL  650 (651)
T ss_pred             cceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999764

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=7.9e-78  Score=666.28  Aligned_cols=597  Identities=36%  Similarity=0.604  Sum_probs=492.1

Q ss_pred             ccccCCCCCceeeeccc--------cC------CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHH
Q 007257            2 SVQKYPGNRMLGWRPFV--------DG------KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE   67 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~--------~~------~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~   67 (611)
                      +|+++||++|+......        ++      ..++|+++||+|+.++++++|++|.+.|+++||+|+|+++|+++|++
T Consensus        67 ~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~  146 (696)
T PLN02387         67 SCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLI  146 (696)
T ss_pred             HHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHH
Confidence            57889999999543110        11      12567889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHh-hhCCC
Q 007257           68 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-VQTGI  146 (611)
Q Consensus        68 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~  146 (611)
                      +++||+++|++++|+++.++.+++.++|+.++++++|++.+....+.... ...+.++.++.+++......... .....
T Consensus       147 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  225 (696)
T PLN02387        147 ALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS-SQLETVKRVIYMDDEGVDSDSSLSGSSNW  225 (696)
T ss_pred             HHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh-hccCCceEEEEECCCCchhhhhhhccCCc
Confidence            99999999999999999999999999999999999999987766554332 23356777888775432111100 11223


Q ss_pred             ceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecch
Q 007257          147 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  226 (611)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  226 (611)
                      ...+|+++...+...........++|+++|+|||||||.||||++||+++...+......+    ..+..+|++++.+|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~----~~~~~~d~~l~~lPl  301 (696)
T PLN02387        226 TVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVV----PKLGKNDVYLAYLPL  301 (696)
T ss_pred             EEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhc----CCCCCCCEEEEECcH
Confidence            4557777766543322233345789999999999999999999999999998877654432    146788999999999


Q ss_pred             hhHHHHHHHHHHhhcCceEEEecC----C-----hHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007257          227 AHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  297 (611)
Q Consensus       227 ~~~~g~~~~~~~l~~G~~~~~~~~----~-----~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  297 (611)
                      +|++++......+..|+++.+...    +     +..++..+++++||+++++|.+++.+.+.........+.+.+..+.
T Consensus       302 ~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~  381 (696)
T PLN02387        302 AHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFD  381 (696)
T ss_pred             HHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            999998877667777877765432    1     2345668999999999999999999998776666666667777777


Q ss_pred             HHHHHHHHHHhhc--CCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCce
Q 007257          298 ALYKYKLAWMNMG--YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  375 (611)
Q Consensus       298 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~  375 (611)
                      .+...+...+...  ......+.+++.+.+++.+..+++++|.+++||+++++++.+++...+|++++++||+||+++.+
T Consensus       382 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~  461 (696)
T PLN02387        382 IAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGA  461 (696)
T ss_pred             HHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccce
Confidence            7766555444311  11234677889999999999999999999999999999999888887899999999999998877


Q ss_pred             eeccCCCccccCccCCCccCeeEEEeecCCCCCCCC-CCCCCcEEEEecCCcccccCCChHhhhhhcc---CC--ccccC
Q 007257          376 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DG--WFHTG  449 (611)
Q Consensus       376 ~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~g--~~~TG  449 (611)
                      +....... ..+++|.|+|+++++++|.++++.... .+++.|||+|+||+++.||+++++.|.+.|.   +|  ||+||
T Consensus       462 ~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TG  540 (696)
T PLN02387        462 TFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTG  540 (696)
T ss_pred             eecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecC
Confidence            66554433 348999999999999998544443221 2334699999999999999999999999982   35  99999


Q ss_pred             ceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCC-C
Q 007257          450 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH-A  528 (611)
Q Consensus       450 D~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~-~  528 (611)
                      |+|++|+||++++.||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|.+....++|+|+++.+....|....+. .
T Consensus       541 Dig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~  620 (696)
T PLN02387        541 DIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDY  620 (696)
T ss_pred             ceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCC
Confidence            999999999999999999999986799999999999999999999999999887789999999999999999888776 5


Q ss_pred             CcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHh
Q 007257          529 GSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE  604 (611)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~  604 (611)
                      .++.+.|.+.++.+.+.+.+.+..++.+|+.+++|+.|.+++++|++++...|++.|++|+.+.+.|+++|++||+
T Consensus       621 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~  696 (696)
T PLN02387        621 SNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKLYE  696 (696)
T ss_pred             CCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHHHHhC
Confidence            6799999999999999999999988789999999999999999999999999999999999999999999999995

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.5e-77  Score=655.63  Aligned_cols=586  Identities=26%  Similarity=0.415  Sum_probs=473.8

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEEcCCchhHHH
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS---GAEPG-----------CRVGIYGANCPQWVE   67 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~---Gv~~g-----------d~V~i~~~n~~~~~~   67 (611)
                      +|+++||++|+++.   + .+..++++||+|+.+++.++|++|.+.   |+++|           |+|+|+++|+++|++
T Consensus        70 ~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~  145 (746)
T PTZ00342         70 KYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLV  145 (746)
T ss_pred             HHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHH
Confidence            57889999999864   2 223478999999999999999999974   99999           999999999999999


Q ss_pred             HHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHH----------
Q 007257           68 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ----------  137 (611)
Q Consensus        68 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------  137 (611)
                      +.+||+++|++.+|+++.++.+++.++|++++++++|++.+....+.... ...+.++.+++++......          
T Consensus       146 ~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  224 (746)
T PTZ00342        146 ADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERK-NELPHLKKLIILDTLIKSKEININKEEKN  224 (746)
T ss_pred             HHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhh-ccCCCceEEEEECCCCccccccccccccc
Confidence            99999999999999999999999999999999999999877666554332 2345677777776421100          


Q ss_pred             -------HH-------------------------------------H---hhhCCCceeeHHHHHhcccccCCcCCCCCC
Q 007257          138 -------KE-------------------------------------M---AVQTGIKPYSWDEFLHLGKVNEMEILPPQP  170 (611)
Q Consensus       138 -------~~-------------------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (611)
                             ..                                     .   ....+.....|+++.... .......+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  303 (746)
T PTZ00342        225 NGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNK-TTNYKIQNEDP  303 (746)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhc-ccCCCCCCCCc
Confidence                   00                                     0   000011223344443321 11122334568


Q ss_pred             CCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecC
Q 007257          171 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG  250 (611)
Q Consensus       171 ~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  250 (611)
                      +++++|+|||||||.||||++||+++.+.+.......   .......+++++.+|++|++++...+.+++.|+++++.+.
T Consensus       304 dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~  380 (746)
T PTZ00342        304 DFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSK  380 (746)
T ss_pred             cceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence            9999999999999999999999999998876543221   0012345899999999999999877788999999999877


Q ss_pred             ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH--hhHHH
Q 007257          251 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL--AFRKV  328 (611)
Q Consensus       251 ~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  328 (611)
                      ++..+++.|++++||+++++|.+++++.+.+.......+.+++.++..+...+..... +    ...++++.+  .+++.
T Consensus       381 ~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~----~~~~~~~~~~~v~~ki  455 (746)
T PTZ00342        381 DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNN-G----GFSKFLEGITHISSKI  455 (746)
T ss_pred             CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc-C----CcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999877776666777777777777665554322 1    123444443  47788


Q ss_pred             HHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc-cCeeEEEeecCCCC
Q 007257          329 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS-VYSELRLEEVPEMG  407 (611)
Q Consensus       329 ~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~-~~~~v~i~~~~~~~  407 (611)
                      ++.++++||.+++||+++++++.++|...+|++++++||+||+++..+...+.. ...+++|.|+ |++++++++.++..
T Consensus       456 r~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~  534 (746)
T PTZ00342        456 KDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADD-NNTESIGGPISPNTKYKVRTWETYK  534 (746)
T ss_pred             HHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCC-CCcccccCcCCCcEEEEEecccccc
Confidence            888999999999999999999999999888999999999999988766655443 3458999998 99999999843322


Q ss_pred             CCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHH
Q 007257          408 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV  486 (611)
Q Consensus       408 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~  486 (611)
                        ..+.++.|||+++||+++.|||++|+.|+++| .||||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||++
T Consensus       535 --~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~  612 (746)
T PTZ00342        535 --ATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNL  612 (746)
T ss_pred             --cCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHH
Confidence              22233479999999999999999999999999 599999999999999999999999999999878999999999999


Q ss_pred             HhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCC------C-CCcHHH-----HhccHHHHHHHHHHHHHHHHh
Q 007257          487 YCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG------H-AGSFLE-----LCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       487 l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~------~-~~~~~~-----~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      |.+||.|.+|+|+|......++|+|+++.+....|...++      . ..+..+     .+.+.++.+.+.+.+.+..++
T Consensus       613 l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  692 (746)
T PTZ00342        613 YSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKK  692 (746)
T ss_pred             HhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999986567999999999999988887653      2 223433     345667899999999999777


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH---HHHHHHHhh
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ---VEIDQLYEK  605 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~---~~~~~~y~~  605 (611)
                      ..|++|.+++.|.+++++|+++. -.||+.|++|..+.+.|+   +.|+++|.+
T Consensus       693 ~~l~~~e~i~~~~l~~~~~t~~~-~lTpt~KlkR~~v~~~y~~~i~~i~~~y~~  745 (746)
T PTZ00342        693 TNLNRYNIINDIYLTSKVWDTNN-YLTPTFKVKRFYVFKDYAFFIDQVKKIYKN  745 (746)
T ss_pred             hCCccceeeeeEEEecCCCCCCC-ccChhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence            78999999999999999999865 699999999999999999   777788864

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=8e-77  Score=620.89  Aligned_cols=578  Identities=36%  Similarity=0.584  Sum_probs=482.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .++.+|+.+++...     ..+.++.+||+|+.+++..+|.+|.+.|+..||+|+|++.|+++|+++.+||+.+|++.+|
T Consensus        25 ~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp   99 (613)
T COG1022          25 RVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVP   99 (613)
T ss_pred             HhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEe
Confidence            46678887788776     3678899999999999999999999999977999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHH---hcc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL---HLG  158 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  158 (611)
                      +.+..+++++.++|++++++++|++...............+.........+........ ..............   ...
T Consensus       100 ~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  178 (613)
T COG1022         100 IYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEA-KALVLEVFPDEGISLFLIDS  178 (613)
T ss_pred             cCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccch-hhccccccccccchhhhhcc
Confidence            99999999999999999999999998766554433332222111111111100000000 00000000000000   111


Q ss_pred             cccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHH
Q 007257          159 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF  238 (611)
Q Consensus       159 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~  238 (611)
                      ........+..+||+|.|+|||||||.||||++||+|+++++..+...+.    ...++|++++.+|+.|++...+....
T Consensus       179 ~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~----~~~~~d~~LsfLPlaHi~Er~~~~~~  254 (613)
T COG1022         179 AGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP----PIGPGDRVLSFLPLAHIFERAFEGGL  254 (613)
T ss_pred             cccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC----CCCCCcEEEEeCcHHHHHHHHHHHHH
Confidence            11222235678999999999999999999999999999999999888771    38899999999999999999875444


Q ss_pred             hhcCceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh---hcCCCCC
Q 007257          239 FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---MGYKQRE  315 (611)
Q Consensus       239 l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  315 (611)
                      ...++...+...++..++..+++++||+++++|.+++.+-+.+.+...+.+..++.+|..+...+.....   .+.....
T Consensus       255 ~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~  334 (613)
T COG1022         255 ALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLS  334 (613)
T ss_pred             HhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence            4444444455559999999999999999999999999999999999999888888888888776543332   2222222


Q ss_pred             cchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccC
Q 007257          316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY  395 (611)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~  395 (611)
                      .....|++.|+++++..+.+++.+++||+++++++..+|+.. |+++.++||+||+++..+.+.+..... +++|.|+|+
T Consensus       335 ~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~~~~-gtvG~p~p~  412 (613)
T COG1022         335 WLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDRFVL-GTVGKPLPG  412 (613)
T ss_pred             hhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccCccc-CCcCCcCCC
Confidence            333589999999999999999999999999999999999975 899999999999999999998887666 999999999


Q ss_pred             eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCC
Q 007257          396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  474 (611)
Q Consensus       396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~  474 (611)
                      ++++|+|             .|||+||||+++.|||++|+.|+++| .||||+|||+|.+|++|+|++.||.+|+|+.++
T Consensus       413 ~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~  479 (613)
T COG1022         413 IEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSN  479 (613)
T ss_pred             ceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCC
Confidence            9999999             59999999999999999999999999 599999999999999999999999999999999


Q ss_pred             ceecCcHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCC--CCcHHHHhccHHHHHHHHHHHHHHH
Q 007257          475 GEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH--AGSFLELCSLVQLQNYILSELKNAA  552 (611)
Q Consensus       475 G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~  552 (611)
                      |++|.|+.||+.+.++|.|.+++|+| ++...+.|+|+++.+....|....+.  ..+..+++.+..+.+.+..++....
T Consensus       480 GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~  558 (613)
T COG1022         480 GKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGN  558 (613)
T ss_pred             CcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999 66889999999999999988888764  5788899999999999999999987


Q ss_pred             HhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 007257          553 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  607 (611)
Q Consensus       553 ~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~~  607 (611)
                      .  .+..+..++++.+++.+|+.+..-.|++-|++|..+.+.|+++++.+|++.+
T Consensus       559 ~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~~~  611 (613)
T COG1022         559 K--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQS  611 (613)
T ss_pred             h--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhccc
Confidence            5  5588999999999999999999999999999999999999999999999754

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-76  Score=580.90  Aligned_cols=575  Identities=38%  Similarity=0.669  Sum_probs=518.7

Q ss_pred             CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCc
Q 007257           22 FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEI  100 (611)
Q Consensus        22 ~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~-V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~  100 (611)
                      =++|+++||.|+..++..+|++|.+.|++++++ ++|+++.+.+|+.+++||++.+..+|-+...+..+.+.|-|+++++
T Consensus        84 Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~  163 (678)
T KOG1180|consen   84 LGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETES  163 (678)
T ss_pred             ccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccc
Confidence            356899999999999999999999999997766 9999999999999999999999999999999999999999999999


Q ss_pred             cEEEEcchhHHHHhccccccccCccEEEEecCCcH----HHHHHhhhCCCceeeHHHHHhcccccCCcCCCCCCCCeEEE
Q 007257          101 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA----EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI  176 (611)
Q Consensus       101 ~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  176 (611)
                      +.+|++.+.+..+.. .......++.||.++..+.    ..-...........+++++.+.+.....++.++.|+|+|+|
T Consensus       164 ~~i~T~~~LL~kl~~-~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~I  242 (678)
T KOG1180|consen  164 TAIFTDSELLPKLKA-PLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACI  242 (678)
T ss_pred             eEEEeCHHHHHHHHH-HHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEE
Confidence            999999998885543 3345588899999985332    22222234567889999999999877667777799999999


Q ss_pred             EEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecC-Ch---
Q 007257          177 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DL---  252 (611)
Q Consensus       177 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~---  252 (611)
                      ||||||||.||||+++|.|+++.+.......+    .+.+.|+++..+|+.|++.+.+-+.+++.|+.+-..+. +.   
T Consensus       243 MYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~----~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdt  318 (678)
T KOG1180|consen  243 MYTSGSTGLPKGVMLTHSNIVAGVTGVGENVP----ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDT  318 (678)
T ss_pred             EEcCCCCCCCceEEEecccHHhhhhhhcccCc----ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceeccc
Confidence            99999999999999999999999998876653    68899999999999999999999999999999987654 11   


Q ss_pred             -----HHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHH
Q 007257          253 -----NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK  327 (611)
Q Consensus       253 -----~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (611)
                           ..---.+..+|||+|.++|.++.++-+........++.+.+..|..++..+...+..   ...-.++++.+.|.+
T Consensus       319 s~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~---~g~~s~~ld~lVFkK  395 (678)
T KOG1180|consen  319 SSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER---NGPGSPLLDALVFKK  395 (678)
T ss_pred             chhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc---cCCchhhHHHHHHHH
Confidence                 111223457899999999999999999999999999999999999998877777762   234578999999999


Q ss_pred             HHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCC
Q 007257          328 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG  407 (611)
Q Consensus       328 ~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~  407 (611)
                      ++...+.+||++++||++|+++..+++.-.+++|+.++||.||+++..+...+.+... +.+|.|++.++++++|.++++
T Consensus       396 Ir~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgG  474 (678)
T KOG1180|consen  396 IRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGG  474 (678)
T ss_pred             HHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcC
Confidence            9999999999999999999999999999888999999999999999988887776655 899999999999999999999


Q ss_pred             CCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-c-CC--ccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHH
Q 007257          408 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL  483 (611)
Q Consensus       408 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~-~g--~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~i  483 (611)
                      ...-.....||||++|+++..||+++++.|++.| . +|  ||+|||+|.+.+||.|.+.+|.+|.+|+.+|+.|+++-+
T Consensus       475 Y~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~Kv  554 (678)
T KOG1180|consen  475 YFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKV  554 (678)
T ss_pred             ccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHH
Confidence            8777666789999999999999999999999999 4 88  999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCC-CCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcce
Q 007257          484 ENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH  562 (611)
Q Consensus       484 E~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~  562 (611)
                      |.+++..|.|+...|++.+....++++|||+......+....+. ..++.++|.+.++.+.+.++|.++.+.++|.++.+
T Consensus       555 Ea~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEi  634 (678)
T KOG1180|consen  555 EAALRSSPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEI  634 (678)
T ss_pred             HHHHhcCcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccc
Confidence            99999999999999999998889999999999999999998888 55999999999999999999999998899999999


Q ss_pred             eeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 007257          563 IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  605 (611)
Q Consensus       563 p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~  605 (611)
                      |..|++.++++++++.-.|+.-|++|+.+++.|+++||++|++
T Consensus       635 p~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~  677 (678)
T KOG1180|consen  635 PAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEIDRLYKE  677 (678)
T ss_pred             cceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999985

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9e-76  Score=651.60  Aligned_cols=591  Identities=31%  Similarity=0.519  Sum_probs=481.3

Q ss_pred             ccccCCCCCceeeeccc----------cCC--------CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch
Q 007257            2 SVQKYPGNRMLGWRPFV----------DGK--------FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP   63 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~----------~~~--------~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~   63 (611)
                      +|+++||++|+.+....          ++.        .++++++||+||.++++++|++|.+.|+++||+|+|+++|++
T Consensus        78 ~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~  157 (700)
T PTZ00216         78 ICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRW  157 (700)
T ss_pred             HHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH
Confidence            57889999999985100          111        125689999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhh
Q 007257           64 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  143 (611)
Q Consensus        64 ~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  143 (611)
                      +|++++|||+++|++++|+++.++++++.++|++++++++|++......+.............++.++.....    ...
T Consensus       158 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~  233 (700)
T PTZ00216        158 EWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDT  233 (700)
T ss_pred             HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCCccc----ccc
Confidence            9999999999999999999999999999999999999999998776554433222111112245555432211    011


Q ss_pred             CCCceeeHHHHHhccc--ccC-CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEE
Q 007257          144 TGIKPYSWDEFLHLGK--VNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  220 (611)
Q Consensus       144 ~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  220 (611)
                      ......+|+++...+.  ... ....+..++++++++|||||||.||||++||+++.+.+......+......+..++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~  313 (700)
T PTZ00216        234 EGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETY  313 (700)
T ss_pred             CCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEE
Confidence            2234567888776542  111 1123446899999999999999999999999999988776543321100123678999


Q ss_pred             EEecchhhHHHHHHHHHHhhcCceEEEecCChHHHHH-------HHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHH
Q 007257          221 LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD-------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  293 (611)
Q Consensus       221 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~-------~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~  293 (611)
                      ++.+|++|.++.......+..|+++++.  ++..+.+       .+++++||++.++|.+++.+.+.........+.+++
T Consensus       314 ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~  391 (700)
T PTZ00216        314 CSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKR  391 (700)
T ss_pred             EEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHH
Confidence            9999999999987666667788877663  4555554       688999999999999999999887777666777788


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCC
Q 007257          294 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  373 (611)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~  373 (611)
                      ..+..+...+...+..+    ...++++...+++.+..+++++|.+++||+++++++.++++..++ +++++||+||+++
T Consensus       392 ~~~~~a~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~  466 (700)
T PTZ00216        392 RVFDHAYQSRLRALKEG----KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC  466 (700)
T ss_pred             HHHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccc
Confidence            88887776666555543    235678888888888888899999999999999999998888778 9999999999987


Q ss_pred             ceeeccCCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceE
Q 007257          374 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG  452 (611)
Q Consensus       374 ~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~  452 (611)
                      ..+....... ..+++|+|+++++++|+| +++......+++.|||+|+||+++.||+++++.|++.| .+|||+|||+|
T Consensus       467 ~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig  544 (700)
T PTZ00216        467 CGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVG  544 (700)
T ss_pred             cccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceE
Confidence            7665544332 348999999999999999 44332333445679999999999999999999999999 68999999999


Q ss_pred             EEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcce--EEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCc
Q 007257          453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED--IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGS  530 (611)
Q Consensus       453 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~--~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~  530 (611)
                      ++|+||++++.||.||+|+..+|++|+|.+||++|.+||.|.+  ++|++.++.+.++|+|+++.+....|....+....
T Consensus       545 ~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~  624 (700)
T PTZ00216        545 SIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGE  624 (700)
T ss_pred             EEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCC
Confidence            9999999999999999998559999999999999999999997  45666666789999999999988888877766667


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 007257          531 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  605 (611)
Q Consensus       531 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~  605 (611)
                      +.+.+.+.++.+.+.+.+.+..++..|.+|.+|+.|++++++|+++....|+++|++|+++++.|++.|++||++
T Consensus       625 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~  699 (700)
T PTZ00216        625 YPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELFAD  699 (700)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence            889999999999999999999887899999999999999999999999999999999999999999999999975

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5e-76  Score=610.65  Aligned_cols=493  Identities=28%  Similarity=0.380  Sum_probs=404.9

Q ss_pred             CCCC-CceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeC
Q 007257            6 YPGN-RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEACNALSLICVPL   82 (611)
Q Consensus         6 ~pd~-~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~G--v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l   82 (611)
                      ++++ +++++.   +. .  -+.+||.|+.+++.++|.+|.+.|  +++||+|++++||+++++++++||+.+|+++.++
T Consensus        29 ~~~~~~~~i~~---~~-~--g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~  102 (537)
T KOG1176|consen   29 YLDRNTSLVYQ---DS-D--GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPL  102 (537)
T ss_pred             cccCcceEEEe---cC-C--CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccccc
Confidence            3444 666665   21 1  279999999999999999999875  8899999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceee-HHHHHhccccc
Q 007257           83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS-WDEFLHLGKVN  161 (611)
Q Consensus        83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  161 (611)
                      ||.+.+.++.+.++.++++++|++......+.+......   ..++++......   ........... +..+.......
T Consensus       103 Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  176 (537)
T KOG1176|consen  103 NPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGV---ISISDLVEDLDAFEDLMPEGLPD  176 (537)
T ss_pred             CcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCc---cccccccccccchhhccccCCCc
Confidence            999999999999999999999999988877655443221   344444432100   00000111111 33333222111


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHH-hh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~-l~  240 (611)
                      .  ..+...+|++.++|||||||.||||.+||+++..+........     .+...++.++.+|++|.+|+...+.+ +.
T Consensus       177 ~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~  249 (537)
T KOG1176|consen  177 G--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLLLSLLA  249 (537)
T ss_pred             c--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHHHHHHh
Confidence            1  5566779999999999999999999999999998876654444     56779999999999999999998775 55


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.+++|++|++.++|.++..|++.                                     +.
T Consensus       250 ~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~-------------------------------------p~  292 (537)
T KOG1176|consen  250 GGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS-------------------------------------PI  292 (537)
T ss_pred             CCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC-------------------------------------Cc
Confidence            5666666666 999999999999999999999999998762                                     22


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC-CceeeccccCCCCCceeeccCCCccccCccCCCccCeeE
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL  398 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v  398 (611)
                      ..++++        ++++.+.+||++++++..+.+.+.++ ..+.++||+||+|+.++.+......+++++|.++++.++
T Consensus       293 ~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~  364 (537)
T KOG1176|consen  293 VKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRV  364 (537)
T ss_pred             cCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEE
Confidence            222333        59999999999999999999999998 889999999999998888877665667999999998877


Q ss_pred             EEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccC-CccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257          399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY  477 (611)
Q Consensus       399 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~  477 (611)
                      ++.+ +.+  ..+++++.||||++|++++.||++||+.|++.|.+ |||+|||+|++|+||+|++.+|.+|+||. +|++
T Consensus       365 ~v~~-e~g--~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~q  440 (537)
T KOG1176|consen  365 KVLD-ETG--VSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQ  440 (537)
T ss_pred             EeeC-CCC--CCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee-CCEE
Confidence            7776 433  56777889999999999999999999999999955 99999999999999999999999999997 9999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      |+|.|||++|.+||.|.||+|||.+|+   +.++|+||++++.        ..        .        .++|.++++ 
T Consensus       441 v~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~--------~l--------t--------e~di~~~v~-  495 (537)
T KOG1176|consen  441 VSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS--------TL--------T--------EKDIIEYVR-  495 (537)
T ss_pred             eCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC--------cC--------C--------HHHHHHHHH-
Confidence            999999999999999999999999987   4999999998743        11        1        234555554 


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      ++|+.|++|+.+.|+++.      |+|++||++|+.|++++.+
T Consensus       496 k~l~~y~~~~~V~Fvd~l------PKs~~GKi~R~~lr~~~~~  532 (537)
T KOG1176|consen  496 KKLPAYKLPGGVVFVDEL------PKTPNGKILRRKLRDIAKK  532 (537)
T ss_pred             hhCChhhccCeEEEeccC------CCCCcchHHHHHHHHHHHh
Confidence            889999999999999876      9999999999999999876

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=4.9e-74  Score=592.28  Aligned_cols=486  Identities=21%  Similarity=0.225  Sum_probs=401.8

Q ss_pred             CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCC
Q 007257            6 YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD   84 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~   84 (611)
                      .+|++|+++.   +...+. +.+||+||++.++++|+.|++. |+ +||||++++|+.+|.++++|||+++|++.+|+.+
T Consensus        23 ~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~   97 (528)
T COG0365          23 RPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSP   97 (528)
T ss_pred             CCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeeccc
Confidence            4789999998   433344 9999999999999999999874 78 9999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHhhcCccEEEEcchhHHHHhcccccc--ccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccC
Q 007257           85 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS--AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  162 (611)
Q Consensus        85 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (611)
                      .++++++..++++++++++|+++.............  ......+++.....              ..|.++.... ...
T Consensus        98 ~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~~~~~~~~-~~~  162 (528)
T COG0365          98 GLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWYDEAVEKA-SEK  162 (528)
T ss_pred             CCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccHHHHhhcc-CCC
Confidence            999999999999999999999887655432211100  00000022222111              4566665544 233


Q ss_pred             CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcc-cccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          163 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       163 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      ....+..++|+++++|||||||+||||+++|.+++....... ..+     .+.++|++++..++.|++|... .+.++.
T Consensus       163 ~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~  237 (528)
T COG0365         163 FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDPGWIYGLWYSVFSPLA  237 (528)
T ss_pred             CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCchhhhCchHHHHHHHh
Confidence            444458999999999999999999999999997776665443 333     6679999999999999999998 677899


Q ss_pred             cCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          241 RGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       241 ~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      .|++++++..    ++..+++.|+++++|.++++|+.++.|.+...                                  
T Consensus       238 ~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~----------------------------------  283 (528)
T COG0365         238 SGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL----------------------------------  283 (528)
T ss_pred             cCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC----------------------------------
Confidence            9999999876    38899999999999999999999999865311                                  


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCe
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS  396 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~  396 (611)
                         .        +...+++||.+.++||||+++.++++.+.+|++|.+.||+||+|+++....+ .... ++.|.|+||+
T Consensus       284 ---~--------~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~-g~~g~p~pG~  350 (528)
T COG0365         284 ---G--------EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKN-GSSGLPLPGY  350 (528)
T ss_pred             ---c--------ccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCC-CCCCCCCCCc
Confidence               1        1223359999999999999999999999999999999999999977666655 3333 5569999999


Q ss_pred             eEEEeecCCCCCCCCCCCCCcEEEEecC--CcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCC
Q 007257          397 ELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  474 (611)
Q Consensus       397 ~v~i~~~~~~~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~  474 (611)
                      ++.++| +++  .+++.++ |+|.++.+  +++.+||+|++.+.++|.++||.|||.+++|+||++++.||.||+||+ .
T Consensus       351 ~~~vvd-d~g--~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i~GR~DDvI~v-s  425 (528)
T COG0365         351 AVRRVD-DEG--NPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKV-S  425 (528)
T ss_pred             eeEEEC-CCC--CcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEEEeeccceEec-c
Confidence            999999 553  5666667 99999986  889999999999999996669999999999999999999999999997 8


Q ss_pred             ceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 007257          475 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  551 (611)
Q Consensus       475 G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  551 (611)
                      |+++.|.|||++|.+||.|.||+|||.+|+   +.+.|||+++++...                  .    .+.++|+++
T Consensus       426 G~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~------------------~----~L~~ei~~~  483 (528)
T COG0365         426 GKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEP------------------N----ELAEEIRRH  483 (528)
T ss_pred             CeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCCh------------------H----HHHHHHHHH
Confidence            999999999999999999999999999876   379999999987521                  1    556666677


Q ss_pred             HHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          552 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       552 ~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +++...| +..|+.|.++++.      |+|.+||+.|+.|++.+.+
T Consensus       484 vr~~~~~-~~~p~~i~fv~~L------PkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         484 VARNIGP-HAIPRKIRFVDEL------PKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             HHhccCc-ccCCceEEEecCC------CCCCcccHHHHHHHHHHhh
Confidence            7544444 9999999999776      9999999999999998874

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=3.4e-73  Score=547.39  Aligned_cols=498  Identities=23%  Similarity=0.292  Sum_probs=420.3

Q ss_pred             cccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeC
Q 007257            3 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL   82 (611)
Q Consensus         3 a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l   82 (611)
                      +++.||+.|+++..  -+     .++||+|+.+.++++|++|...|+++||+|++..||+.+|+.++|||+++|.+.+++
T Consensus        60 t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~  132 (596)
T KOG1177|consen   60 TERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNL  132 (596)
T ss_pred             hhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEecc
Confidence            57789999999872  12     469999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHH------------HHhcc-----ccccccCccEEEEecCCcHHHHHHhhhCC
Q 007257           83 YDTLGPGAVNFILDHAEIDFVFVQDKKVK------------ELLSP-----DCRSAQRLRVMVCFTSLTAEQKEMAVQTG  145 (611)
Q Consensus        83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~------------~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  145 (611)
                      ||.+...++++.|++.+++++|+.+....            .+...     -.+.++.++.++..+++..         .
T Consensus       133 NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~---------~  203 (596)
T KOG1177|consen  133 NPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHP---------L  203 (596)
T ss_pred             CcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCc---------C
Confidence            99999999999999999999999874321            11111     1224477778877774332         2


Q ss_pred             CceeeHHHHHhcccccCC-----cCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEE
Q 007257          146 IKPYSWDEFLHLGKVNEM-----EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  220 (611)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  220 (611)
                      .+...+++++.....+..     -.....||+++.|.|||||||.|||+-+||-+++++.......+     ++.+.+++
T Consensus       204 ~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~-----g~~e~~~i  278 (596)
T KOG1177|consen  204 PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA-----GYNEKHRI  278 (596)
T ss_pred             CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh-----CcCcceEE
Confidence            345667777766544221     12345789999999999999999999999999999998888777     88888899


Q ss_pred             EEecchhhHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007257          221 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  297 (611)
Q Consensus       221 l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  297 (611)
                      .+..|++|.+|... ++.++..|++++++.+  ++...+++|.++++|.++++|++|..|++..                
T Consensus       279 ~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~----------------  342 (596)
T KOG1177|consen  279 CIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIP----------------  342 (596)
T ss_pred             EecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcch----------------
Confidence            99999999999654 7788999999999766  9999999999999999999999999987532                


Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCC-ceeeccccCCCCCcee
Q 007257          298 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTT  376 (611)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~g~~~~  376 (611)
                                           ....+++        +++|.++.||+++|+++.+.+...++. .+...||+||++.+.+
T Consensus       343 ---------------------~~~~~~~--------s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~  393 (596)
T KOG1177|consen  343 ---------------------QKQQVDL--------SSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLF  393 (596)
T ss_pred             ---------------------hhccCch--------hhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCccee
Confidence                                 2222233        389999999999999999999887653 4778999999998888


Q ss_pred             eccCCC--ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEE
Q 007257          377 VCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  453 (611)
Q Consensus       377 ~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~  453 (611)
                      ....++  .....++|+.+++.+..+++ .++...++  +..|||++||++.+.|||++++.|.++. .|.||+|||+|.
T Consensus       394 ~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~--~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~  470 (596)
T KOG1177|consen  394 MSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPL--GTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAV  470 (596)
T ss_pred             eecCCCCHHHHHhhhhhccccccccccc-CCCCcccc--CCCceEEEEechhheeecCCcccchhhcccccceecCceEE
Confidence            776655  34447899999999999999 66655544  4579999999999999999999999988 789999999999


Q ss_pred             EccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEecChHHHHHHHHHCCCCCc
Q 007257          454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGS  530 (611)
Q Consensus       454 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~  530 (611)
                      +|++|.+++.||++|||+ ++|++|+|.|||+.|.+||.|.++.|+|++|.+   .++|+|-+.++...           
T Consensus       471 m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~-----------  538 (596)
T KOG1177|consen  471 MDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEG-----------  538 (596)
T ss_pred             EcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccc-----------
Confidence            999999999999999998 699999999999999999999999999999774   88999988875410           


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          531 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       531 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                                 ....+.|+.+++ .++..|++|++|.++++      +|+|-+|||+|.+++++.+.++
T Consensus       539 -----------~~t~E~lKa~Ck-~klaHFKiPky~vf~~~------FPlT~tGKIqKFeir~~~k~~l  589 (596)
T KOG1177|consen  539 -----------KTTAETLKAMCK-GKLAHFKIPKYFVFVDE------FPLTTTGKIQKFEIREMSKGHL  589 (596)
T ss_pred             -----------cccHHHHHHHHh-cccccccCCcEEEEecc------CcccccccchhHHHHHHHHhhc
Confidence                       134567778886 77999999999999976      3999999999999999998655

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.7e-71  Score=595.59  Aligned_cols=495  Identities=29%  Similarity=0.415  Sum_probs=404.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++|+++|+++.   +.. +   ++||+||+++++++|.+|.+.|+++||+|+|+++|++++++++|||+++|++++|
T Consensus        20 ~a~~~~~~~a~~~~---~~~-~---~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vp   92 (534)
T COG0318          20 AARRNPDRPALIFL---GRG-G---RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVP   92 (534)
T ss_pred             HHHhCCCceEEEEc---CCC-c---eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEee
Confidence            57789999999997   321 1   5999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCce-eeHHHHHhcccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWDEFLHLGKV  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  160 (611)
                      +||.++..++.++++.++++++++++........ .....+....+........           .. .+++.+......
T Consensus        93 ln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  160 (534)
T COG0318          93 LNPRLTPRELAYILNDAGAKVLITSAEFAALLEA-VAEALPVVLVVLLVGDADD-----------RLPITLEALAAEGPG  160 (534)
T ss_pred             cCcccCHHHHHHHHHhcCCeEEEEcccchhHHHH-HhccCCcceEEEecccccc-----------cccccHHHHhhccCC
Confidence            9999999999999999999999999873222211 1111122222222221110           00 234444322222


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCC--CCCCcEEEEecchhhHHHHHHHHHH
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLPLAHILDRVIEEYF  238 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~p~~~~~g~~~~~~~  238 (611)
                      .........++++++++|||||||.||+|++||+++..+...+...+     .  +...|++++++|++|.+|+...+.+
T Consensus       161 ~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl~H~~Gl~~~~~~  235 (534)
T COG0318         161 PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPLFHIFGLIVGLLA  235 (534)
T ss_pred             cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecChHHHHHHHHHHHH
Confidence            22222236799999999999999999999999999999888877766     5  8899999999999999999986665


Q ss_pred             -hhcCceEEEec---CChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257          239 -FRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  314 (611)
Q Consensus       239 -l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (611)
                       ++.|+++++.+   +++..++..+.++++|+++++|.++..++.......                             
T Consensus       236 ~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-----------------------------  286 (534)
T COG0318         236 PLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-----------------------------  286 (534)
T ss_pred             HHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----------------------------
Confidence             89999999987   499999999999999999999999999876322211                             


Q ss_pred             CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC-CceeeccccCCCCCceeeccCCC-ccccCccCCC
Q 007257          315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPV  392 (611)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~  392 (611)
                              .++.       +++|.+++||+++++++.+.+.+.++ ..+.+.||+||+++.++.+.... ....+++|.|
T Consensus       287 --------~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~  351 (534)
T COG0318         287 --------DDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRP  351 (534)
T ss_pred             --------cccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCccccc
Confidence                    0010       13999999999999999999999997 57999999999998888777666 2355788999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccC-CccccCceEEEccCCeEEEEeccCCeEE
Q 007257          393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNLIK  471 (611)
Q Consensus       393 ~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~dG~l~~~GR~~d~i~  471 (611)
                      +|+++++|+| ++++ .+.+ |+.|||+++||+++.|||++|+.|.+.|.+ |||+|||+|++|+||++++.||.+|+|+
T Consensus       352 ~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~  428 (534)
T COG0318         352 LPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLII  428 (534)
T ss_pred             CCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEE
Confidence            9999999999 5554 3444 779999999999999999999999998875 9999999999999999999999999999


Q ss_pred             cCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257          472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  548 (611)
Q Consensus       472 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  548 (611)
                      . +|++|+|.+||+++.+||.|.+|+|+|.+++   +.++|+|+++++..                  .    ....++|
T Consensus       429 ~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~------------------~----~~~~~~i  485 (534)
T COG0318         429 S-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD------------------A----ELTAEEL  485 (534)
T ss_pred             e-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC------------------C----CCCHHHH
Confidence            6 9999999999999999999999999999876   59999999987530                  0    0012344


Q ss_pred             HHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          549 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       549 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .++++ ..++.|++|+.+.++++.      |+|++||++|++|++.+..
T Consensus       486 ~~~~~-~~l~~~~~P~~v~~v~~l------P~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         486 RAFLR-KRLALYKVPRIVVFVDEL------PRTASGKIDRRALREEYRA  527 (534)
T ss_pred             HHHHH-hhhhcccCCeEEEEeCCC------CCCCchhhhHHHHHHHHHh
Confidence            44443 579999999999999665      9999999999999999877

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=2.8e-68  Score=585.39  Aligned_cols=530  Identities=20%  Similarity=0.268  Sum_probs=416.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   + ..+.++++||+||.++++++|++|.+.|+++||+|+++++|+++|++++|||+++|++++|
T Consensus        48 ~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vp  123 (614)
T PRK08180         48 WAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAP  123 (614)
T ss_pred             HHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEee
Confidence            56789999999875   2 3345689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-----hhHHHHHHhhcCccEEEEcchh-HHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHH
Q 007257           82 LYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL  155 (611)
Q Consensus        82 l~~~~~-----~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (611)
                      ++|.++     .+++.+++++++++++|+++.. ..........  .. ..++.......         .....+|.++.
T Consensus       124 l~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~-~~~i~~~~~~~---------~~~~~~~~~~~  191 (614)
T PRK08180        124 VSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--AD-VEVVAVRGAVP---------GRAATPFAALL  191 (614)
T ss_pred             eccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CC-ceEEEecCCCC---------CcccccHHHHh
Confidence            999998     7899999999999999998642 2211111111  11 12222222110         00123455554


Q ss_pred             hcccccC--CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCC--CCcEEEEecchhhHHH
Q 007257          156 HLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVYLSFLPLAHILD  231 (611)
Q Consensus       156 ~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~g  231 (611)
                      .......  .......++++++|+|||||||.||||++||+++...+......+     ...  ..+++++.+|++|.++
T Consensus       192 ~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l~~lPl~h~~g  266 (614)
T PRK08180        192 ATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLVDWLPWNHTFG  266 (614)
T ss_pred             ccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEEEecchHHHhh
Confidence            3321111  111234678999999999999999999999999998877655444     332  5689999999999999


Q ss_pred             HHH-HHHHhhcCceEEEecC--C---hHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG--D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  305 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~--~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (611)
                      +.. .+.++..|+++++.+.  +   ...+++.++++++|+++++|.++..|.+.+....                    
T Consensus       267 ~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~--------------------  326 (614)
T PRK08180        267 GNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA--------------------  326 (614)
T ss_pred             HHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch--------------------
Confidence            865 5567899999998753  3   3567889999999999999999999876432210                    


Q ss_pred             HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHH----cC--CceeeccccCCCCCceeecc
Q 007257          306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGLTETCGPTTVCF  379 (611)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~----~~--~~v~~~yG~tE~g~~~~~~~  379 (611)
                                           ......+++||.+++||+++++++.+.+.+.    +|  +++++.||+||++++++...
T Consensus       327 ---------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~  385 (614)
T PRK08180        327 ---------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTT  385 (614)
T ss_pred             ---------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecc
Confidence                                 0111223599999999999999999998874    33  68999999999987766544


Q ss_pred             CCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEE----
Q 007257          380 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI----  454 (611)
Q Consensus       380 ~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~----  454 (611)
                      ... ..++++|+|++++++++++ +         +..|||+|+|++++.||+++++.+.+.| .+|||+|||+|++    
T Consensus       386 ~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~  454 (614)
T PRK08180        386 GPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPA  454 (614)
T ss_pred             ccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCc
Confidence            332 3458999999999999987 2         2359999999999999999999999999 6899999999999    


Q ss_pred             ccCCeEEEEeccCCeEEcCCceecC--cHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHH
Q 007257          455 LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL  532 (611)
Q Consensus       455 ~~dG~l~~~GR~~d~i~~~~G~~v~--~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~  532 (611)
                      |+||++++.||.+|+|++++|++++  +.|+|.++.+||+|.+|+|+|.+ .+.+.|+|+++++....+.... ...+..
T Consensus       455 d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~-~~~~~a~V~~~~~~~~~~~~~~-~~~~~~  532 (614)
T PRK08180        455 DPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHD-RDEIGLLVFPNLDACRRLAGLL-ADASLA  532 (614)
T ss_pred             CCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCC-CCceEEEEEcCHHHHHHHHhhc-ccCCHH
Confidence            4689999999999999877898776  77888999999999999999988 4578899999987544443332 122334


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 007257          533 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  607 (611)
Q Consensus       533 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~~  607 (611)
                      +.++.+++.+.+.+.|.++.. ...+.+.+|+++.++++++...+...|++||++|+++.+.|+++|+++|++..
T Consensus       533 ~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~~~  606 (614)
T PRK08180        533 EVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYADEP  606 (614)
T ss_pred             HHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhCCCC
Confidence            455778889999999988875 33445669999999999888888999999999999999999999999999653

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-69  Score=595.95  Aligned_cols=515  Identities=17%  Similarity=0.198  Sum_probs=394.6

Q ss_pred             CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCC
Q 007257            6 YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT   85 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~   85 (611)
                      +||++|+++.   ....+..+++||+||.+++.++|..|++.|+++||+|+++++|++++++++|||+++|++++|+++.
T Consensus        74 ~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~  150 (647)
T PTZ00237         74 KRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDG  150 (647)
T ss_pred             CCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCC
Confidence            7999999986   3233345899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHhhcCccEEEEcchh---------HHHHhccccccccCccEEEEecCCc---HHHHHH--hhhCCCceeeH
Q 007257           86 LGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLT---AEQKEM--AVQTGIKPYSW  151 (611)
Q Consensus        86 ~~~~~l~~~l~~~~~~~li~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~--~~~~~~~~~~~  151 (611)
                      ++.+++.++|++++|+++|+++..         ...+.............++......   ......  ..........|
T Consensus       151 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (647)
T PTZ00237        151 YSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSW  230 (647)
T ss_pred             CCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccH
Confidence            999999999999999999997531         1111111110001123444332110   000000  00000122456


Q ss_pred             HHHHhccc----ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHh-HHHhhhhcccccccccCCCCCCcEEEEecch
Q 007257          152 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  226 (611)
Q Consensus       152 ~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  226 (611)
                      ++++....    .......+..++++++|+|||||||.||||+++|.+ +..........+     ....++++++..|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~  305 (647)
T PTZ00237        231 YDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII-----EKDIPTVVFSHSSI  305 (647)
T ss_pred             HHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-----CCCCCcEEEEcCCC
Confidence            66654321    111223445789999999999999999999999998 443322222222     56678999999999


Q ss_pred             hhHHHHHHHHHHhhcCceEEEecCC-------hHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007257          227 AHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  299 (611)
Q Consensus       227 ~~~~g~~~~~~~l~~G~~~~~~~~~-------~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  299 (611)
                      +|+.+...++.++..|+++++++.+       +..+++.++++++|+++++|++++.|.+......              
T Consensus       306 ~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------  371 (647)
T PTZ00237        306 GWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEAT--------------  371 (647)
T ss_pred             ceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccc--------------
Confidence            9987766677889999999998652       5789999999999999999999998865311000              


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeecc
Q 007257          300 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  379 (611)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~  379 (611)
                                        .....        ..+++||.+++||+++++++.+++.+.+|+++++.||+||+++.+....
T Consensus       372 ------------------~~~~~--------~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~  425 (647)
T PTZ00237        372 ------------------IIRSK--------YDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCY  425 (647)
T ss_pred             ------------------ccccc--------cCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccC
Confidence                              00001        1125899999999999999999999999999999999999997655443


Q ss_pred             CCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecC---CcccccCCChHhhhhhcc--CCccccCceEEE
Q 007257          380 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESII--DGWFHTGDIGQI  454 (611)
Q Consensus       380 ~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~--~g~~~TGD~~~~  454 (611)
                      .......+++|.|+++++++|+| +++  .+++.|+.|||++++|   +++.|||++++.+.+.|.  +|||+|||+|++
T Consensus       426 ~~~~~~~~s~G~p~~g~~~~i~d-~~g--~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~  502 (647)
T PTZ00237        426 GHINIPYNATGVPSIFIKPSILS-EDG--KELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFK  502 (647)
T ss_pred             CCCCCCCCCCccCcCCceEEEEC-CCC--CCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEE
Confidence            32223347899999999999998 544  4556778999999986   789999999999988773  799999999999


Q ss_pred             ccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcH
Q 007257          455 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  531 (611)
Q Consensus       455 ~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~  531 (611)
                      |+||++++.||.||+|++ +|++|+|.+||++|.+||.|.||+|++.+++   +.++|+|+++++..             
T Consensus       503 d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~-------------  568 (647)
T PTZ00237        503 DENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQS-------------  568 (647)
T ss_pred             CCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCcc-------------
Confidence            999999999999999997 8999999999999999999999999998865   58999999875320             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          532 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       532 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                          ......+.+.++|+++++ ++|+.+++|+.|+++++.      |+|++||++|+.|++.+.
T Consensus       569 ----~~~~~~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~Lr~~~~  622 (647)
T PTZ00237        569 ----NQSIDLNKLKNEINNIIT-QDIESLAVLRKIIIVNQL------PKTKTGKIPRQIISKFLN  622 (647)
T ss_pred             ----ccCCCHHHHHHHHHHHHH-hhcCccccCcEEEEcCCC------CCCCCccEeHHHHHHHHc
Confidence                000011234556677775 679999999999999765      999999999999999874

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=2.5e-68  Score=588.71  Aligned_cols=509  Identities=17%  Similarity=0.169  Sum_probs=397.6

Q ss_pred             cCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCC
Q 007257            5 KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD   84 (611)
Q Consensus         5 ~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~   84 (611)
                      .+||++|+++.   ..+.+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus       101 ~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~  177 (666)
T PLN02654        101 GNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFA  177 (666)
T ss_pred             CCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCC
Confidence            48999999985   333445689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHhhcCccEEEEcchhHHH---------Hhcccccc---ccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257           85 TLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPDCRS---AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  152 (611)
Q Consensus        85 ~~~~~~l~~~l~~~~~~~li~~~~~~~~---------~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  152 (611)
                      .++.+++..+|++++|+++|+++.....         +.......   ......++......................|+
T Consensus       178 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (666)
T PLN02654        178 GFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQ  257 (666)
T ss_pred             CCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHH
Confidence            9999999999999999999998764221         00000000   01111222222111000000000001122355


Q ss_pred             HHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhh-hhcccccccccCCCCCCcEEEEecchhhHHH
Q 007257          153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  231 (611)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g  231 (611)
                      ++.... ..........++++++|+|||||||.||||+++|.+++... ..+...+     +++.+|++++..|++|..+
T Consensus       258 ~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g  331 (666)
T PLN02654        258 DVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPTDVYWCTADCGWITG  331 (666)
T ss_pred             HHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCCcEEEEcCCchhhhh
Confidence            554322 11122334578999999999999999999999999976443 3333334     7888999999999999999


Q ss_pred             HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  305 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (611)
                      ... ++.+++.|+++++++.     ++..+++.|+++++|+++++|+++..|.+.....                     
T Consensus       332 ~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------  390 (666)
T PLN02654        332 HSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY---------------------  390 (666)
T ss_pred             hHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc---------------------
Confidence            776 5667999999999863     6899999999999999999999999886531110                     


Q ss_pred             HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccCCC
Q 007257          306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFPDE  382 (611)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~~~  382 (611)
                                    ....        .+++||.++++|++++++..+++.+.+|   +++.+.||+||+++......+..
T Consensus       391 --------------~~~~--------~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~  448 (666)
T PLN02654        391 --------------VTRH--------SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA  448 (666)
T ss_pred             --------------cccC--------ChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCC
Confidence                          0011        1248999999999999999999999887   78999999999998766554432


Q ss_pred             -ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEEEcc
Q 007257          383 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQILP  456 (611)
Q Consensus       383 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~  456 (611)
                       ...++++|.|++|++++|+| +++.  +++.++.|||++++  |+++.|||++++.+...|   .+|||+|||+|++|+
T Consensus       449 ~~~~~gs~G~p~~g~~v~i~d-~~g~--~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~  525 (666)
T PLN02654        449 WPQKPGSATFPFFGVQPVIVD-EKGK--EIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDK  525 (666)
T ss_pred             CCCCCCccCCCCCCceEEEEC-CCCC--CCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECC
Confidence             34568999999999999998 5554  34566789999999  789999999999888776   379999999999999


Q ss_pred             CCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHH
Q 007257          457 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  533 (611)
Q Consensus       457 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~  533 (611)
                      ||+++++||.||+|++ +|++|+|.+||++|.+||+|.|++|++.++.   +.++|+|+++++.                
T Consensus       526 dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~----------------  588 (666)
T PLN02654        526 DGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGV----------------  588 (666)
T ss_pred             CCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCC----------------
Confidence            9999999999999997 8999999999999999999999999998765   4899999988643                


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          534 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       534 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                        .   ..+.+.++|+++++ .+|+.+++|+.|+++++.      |+|.+||++|++|++.+..
T Consensus       589 --~---~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~r~~l~~~~~~  640 (666)
T PLN02654        589 --P---YSEELRKSLILTVR-NQIGAFAAPDKIHWAPGL------PKTRSGKIMRRILRKIASR  640 (666)
T ss_pred             --C---CCHHHHHHHHHHHH-HhCCCCcCCCEEEECCCC------CCCCCcCchHHHHHHHHcC
Confidence              1   11234456666665 789999999999998665      9999999999999998754

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-67  Score=578.19  Aligned_cols=528  Identities=21%  Similarity=0.272  Sum_probs=414.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +...+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        58 ~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp  134 (624)
T PRK12582         58 WAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAP  134 (624)
T ss_pred             HHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEee
Confidence            57889999999876   333456789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCh-----hHHHHHHhhcCccEEEEcchh-HHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHH
Q 007257           82 LYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL  155 (611)
Q Consensus        82 l~~~~~~-----~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (611)
                      ++|.++.     +++.++++.++++++|+++.. ..........  ... .++.++....         ......+.++.
T Consensus       135 l~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~---------~~~~~~~~~~~  202 (624)
T PRK12582        135 VSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL--LDV-TVVHVTGPGE---------GIASIAFADLA  202 (624)
T ss_pred             ccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh--cCc-eEEEEcCCCc---------ccccccHHHHh
Confidence            9999885     899999999999999998642 2221111111  112 2333332110         01123445544


Q ss_pred             hcccccC--CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCC---CCcEEEEecchhhHH
Q 007257          156 HLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHIL  230 (611)
Q Consensus       156 ~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~  230 (611)
                      .......  .......++++++++|||||||.||||++||.++...........     ...   ..+++++++|++|.+
T Consensus       203 ~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~  277 (624)
T PRK12582        203 ATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTM  277 (624)
T ss_pred             hcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHH
Confidence            3221110  111234678999999999999999999999999988766543332     222   257999999999999


Q ss_pred             HHHHH-HHHhhcCceEEEecC--C---hHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007257          231 DRVIE-EYFFRRGASVGYYHG--D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  304 (611)
Q Consensus       231 g~~~~-~~~l~~G~~~~~~~~--~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (611)
                      |+... +.++..|+++++.+.  .   ...+++.++++++|+++++|.++..|.+.....                    
T Consensus       278 g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~--------------------  337 (624)
T PRK12582        278 GGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKD--------------------  337 (624)
T ss_pred             hHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhC--------------------
Confidence            98764 456889999988753  2   345677788999999999999998886533211                    


Q ss_pred             HHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc------CCceeeccccCCCCCceeec
Q 007257          305 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVC  378 (611)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~------~~~v~~~yG~tE~g~~~~~~  378 (611)
                                   +..        ....+++||.+++||+++++++.++|.+.+      ++++++.||+||++.++...
T Consensus       338 -------------~~~--------~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~  396 (624)
T PRK12582        338 -------------DAL--------RRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGT  396 (624)
T ss_pred             -------------HHH--------HHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecc
Confidence                         000        111224899999999999999999998752      36899999999998776533


Q ss_pred             cCCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEE-c-
Q 007257          379 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L-  455 (611)
Q Consensus       379 ~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~-~-  455 (611)
                      ... ....+++|.|++++++++++          .|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++ | 
T Consensus       397 ~~~-~~~~~svG~p~pg~~v~i~~----------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~  465 (624)
T PRK12582        397 HWD-TERVGLIGLPLPGVELKLAP----------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDP  465 (624)
T ss_pred             cCC-CCCCCCCCcCCCCcEEEEcc----------CCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCC
Confidence            322 23458999999999999975          34579999999999999999999999999 6899999999998 4 


Q ss_pred             --cCCeEEEEeccCCeEEcCCceecCcHHHH--HHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcH
Q 007257          456 --PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSF  531 (611)
Q Consensus       456 --~dG~l~~~GR~~d~i~~~~G~~v~~~~iE--~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~  531 (611)
                        ++|++++.||.||+|++++|++|+|.+||  .++.+||.|.+|+|+|.+ ...+.++|+++......+....+  ...
T Consensus       466 ~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~-~~~~g~lv~p~~~~~~~~~~~~~--~~~  542 (624)
T PRK12582        466 DDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD-RAFIGLLAWPNPAACRQLAGDPD--AAP  542 (624)
T ss_pred             cCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC-CCcEEEEEecCHHHHHHHHhcCC--CCH
Confidence              46999999999999998789999998885  678999999999999986 66788898988766443322211  223


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCcc-eeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 007257          532 LELCSLVQLQNYILSELKNAAERNKLRGFE-HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  606 (611)
Q Consensus       532 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~  606 (611)
                      .+.++.+++.+.+.+.|.++++  .++.+. +|+++.+++++|+.+..++|++||++|+++.+.|+++||++|+..
T Consensus       543 ~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~~  616 (624)
T PRK12582        543 EDVVKHPAVLAILREGLSAHNA--EAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAEP  616 (624)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHh--hcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcCC
Confidence            4556778899999999999965  689999 999999999999989999999999999999999999999999854

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=6.1e-68  Score=577.83  Aligned_cols=516  Identities=21%  Similarity=0.184  Sum_probs=396.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++||++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        16 ~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vp   86 (563)
T PLN02860         16 LATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAP   86 (563)
T ss_pred             HHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEe
Confidence            57889999999865   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.+++++++++++++++..............+....++..++.......    .......++++.......
T Consensus        87 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  162 (563)
T PLN02860         87 LNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLTTEMLKQRALGT  162 (563)
T ss_pred             CCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhccccchhccCcccc
Confidence            9999999999999999999999998754221111111112233333333322100000    000011111111111011


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|.++..........+     ++..+|+++...|++|.+++...+.++..
T Consensus       163 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~  237 (563)
T PLN02860        163 TELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGGLSSALAMLMV  237 (563)
T ss_pred             ccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhccHHHHHHHHHc
Confidence            1111234678999999999999999999999999987766554444     67889999999999999998877888999


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++.+. ++..+++.++++++|+++++|+++..|.+......                                   
T Consensus       238 G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----------------------------------  282 (563)
T PLN02860        238 GACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM-----------------------------------  282 (563)
T ss_pred             CceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh-----------------------------------
Confidence            999988876 99999999999999999999999998875321110                                   


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC-----------------
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-----------------  382 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~-----------------  382 (611)
                              ....++++|.+++||+++++++.+.+.+.| +.++++.||+||+++.+.......                 
T Consensus       283 --------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (563)
T PLN02860        283 --------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTK  354 (563)
T ss_pred             --------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccc
Confidence                    001225899999999999999999999988 789999999999986554322111                 


Q ss_pred             -----ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEcc
Q 007257          383 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  456 (611)
Q Consensus       383 -----~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~  456 (611)
                           .....++|.|++++++++++ ++       .++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus       355 ~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~  426 (563)
T PLN02860        355 SSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDK  426 (563)
T ss_pred             cccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcC
Confidence                 11123689999999999998 33       45689999999999999999999999888 689999999999999


Q ss_pred             CCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHH
Q 007257          457 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  533 (611)
Q Consensus       457 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~  533 (611)
                      ||++++.||.+|+|++ +|++|+|.+||+++.+||+|.+|+|++.++.   +.++|+|+++++....  ..+..      
T Consensus       427 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--~~~~~------  497 (563)
T PLN02860        427 AGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWS--DNEKE------  497 (563)
T ss_pred             CCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccc--cccch------
Confidence            9999999999999997 9999999999999999999999999997765   4899999987642100  00000      


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 007257          534 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  602 (611)
Q Consensus       534 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~  602 (611)
                        ..........+.|.+++++..|+.|++|+.++++.+.     +|+|++||++|++|++++.+.+..+
T Consensus       498 --~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~-----lP~t~~GKi~r~~L~~~~~~~~~~~  559 (563)
T PLN02860        498 --NAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKP-----FPLTTTGKIRRDEVRREVLSHLQSL  559 (563)
T ss_pred             --hhcccccccHHHHHHHHhhCcccccccceEEEEEecC-----CCCCcccchhHHHHHHHHHHHHhcc
Confidence              0000001123456666654469999999998876332     4899999999999999997766554

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.4e-67  Score=581.44  Aligned_cols=514  Identities=17%  Similarity=0.142  Sum_probs=397.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++|+++|+++.   +.+.+..+++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        61 ~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vp  137 (628)
T TIGR02316        61 HLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSV  137 (628)
T ss_pred             HhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEe
Confidence            45678999999986   434455689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhH---------HHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  152 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  152 (611)
                      +++.++.+++.++|++++|+++|+++...         ..+.............++.++.....    ..........|.
T Consensus       138 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~----~~~~~~~~~~~~  213 (628)
T TIGR02316       138 VFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAP----MRLIPGRDVDYA  213 (628)
T ss_pred             cCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC----cCcccCccccHH
Confidence            99999999999999999999999986431         11111111111223445555432100    000011123555


Q ss_pred             HHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhh-hhcccccccccCCCCCCcEEEEecchhhHHH
Q 007257          153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  231 (611)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g  231 (611)
                      ++...............++++++|+|||||||.||||+++|.++.... ......+     ++..+|++++..|++|..+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g  288 (628)
T TIGR02316       214 ALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQVMFSASDVGWVVG  288 (628)
T ss_pred             HHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcEEEEcCCCCeeeh
Confidence            554432222222233567999999999999999999999999976433 3333333     6788999999999999998


Q ss_pred             HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  305 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (611)
                      +.. ++.++..|+++++++.     ++..+++.++++++|+++++|++++.|.+....                      
T Consensus       289 ~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------  346 (628)
T TIGR02316       289 HSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA----------------------  346 (628)
T ss_pred             hhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc----------------------
Confidence            765 6667999999999863     688999999999999999999999877542100                      


Q ss_pred             HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC---
Q 007257          306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---  382 (611)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~---  382 (611)
                                   ...        ...+++||.+++||+++++++.+++.+.+|.++++.||+||++..++....+.   
T Consensus       347 -------------~~~--------~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~  405 (628)
T TIGR02316       347 -------------WLR--------KHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLK  405 (628)
T ss_pred             -------------ccc--------cCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcC
Confidence                         000        11225999999999999999999999989999999999999986544433221   


Q ss_pred             ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecC---CcccccCCChHhhhhhc----cCCccccCceEEEc
Q 007257          383 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDGWFHTGDIGQIL  455 (611)
Q Consensus       383 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g~~~TGD~~~~~  455 (611)
                      ....+++|.|+++++++++| +++ ..+++.++.|||+++||   +.+.+|+++++.+.+.+    .++||+|||+|++|
T Consensus       406 ~~~~gs~G~p~~g~~v~i~d-~~~-g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d  483 (628)
T TIGR02316       406 PVKLGSPGLPMYGYHLRVLD-EAT-GRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRD  483 (628)
T ss_pred             CCCCCCcccCcCCceEEEEE-CCC-CCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEc
Confidence            23347889999999999998 432 24566788999999998   56789999998877654    46799999999999


Q ss_pred             cCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHH
Q 007257          456 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  532 (611)
Q Consensus       456 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~  532 (611)
                      +||+++++||.||+||+ +|++|+|.+||++|.+||+|.||+|++.++.   +.++++|+++++..        .     
T Consensus       484 ~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~--------~-----  549 (628)
T TIGR02316       484 EDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDS--------A-----  549 (628)
T ss_pred             CCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcc--------c-----
Confidence            99999999999999997 8999999999999999999999999998765   37889998875420        0     


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          533 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       533 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                         .+......+.++|+++++ ++|+.|++|+.|+++++.      |+|++||++|++|++.+.
T Consensus       550 ---~~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~~l------P~t~sGKi~r~~L~~~~~  603 (628)
T TIGR02316       550 ---GDAHDPHAVETGMMDCVV-RQLGAVARPARVYFVAAL------PKTRSGKLLRRSIQALAE  603 (628)
T ss_pred             ---ccccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcCCC------CCCCchHHHHHHHHHHHc
Confidence               000011234456666665 779999999999998765      999999999999998764

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=2.8e-67  Score=579.85  Aligned_cols=507  Identities=18%  Similarity=0.212  Sum_probs=402.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +.+.+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        66 ~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~  142 (625)
T TIGR02188        66 HLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSV  142 (625)
T ss_pred             hhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEec
Confidence            46779999999987   333456789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH---------HHhcccccccc-CccEEEEecCCcHHHHHHhhhCCCceeeH
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSW  151 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  151 (611)
                      +++.++.+++.++++.++++++|+++....         .+.... ...+ .+..+++++......   . ........|
T Consensus       143 i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~  217 (625)
T TIGR02188       143 VFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEAL-EKCPVSVEHVLVVRRTGNPV---P-WVEGRDVWW  217 (625)
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHH-HhCCCCccEEEEEcCCCCCc---C-ccccccccH
Confidence            999999999999999999999999875321         111111 1112 344455543321100   0 000112345


Q ss_pred             HHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhh-cccccccccCCCCCCcEEEEecchhhHH
Q 007257          152 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHIL  230 (611)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~  230 (611)
                      +++.... ..........++++++|+|||||||.||+|+++|.++...... ....+     ++..+|++++..|++|..
T Consensus       218 ~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  291 (625)
T TIGR02188       218 HDLMAKA-SAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDIFWCTADVGWIT  291 (625)
T ss_pred             HHHHhhc-CCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcEEEECCCchhhh
Confidence            5555432 2222334567889999999999999999999999998655433 22233     678899999999999998


Q ss_pred             HHHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007257          231 DRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  304 (611)
Q Consensus       231 g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (611)
                      +... ++.++..|+++++++.     ++..+++.++++++|+++++|++++.|.+.....                    
T Consensus       292 g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------  351 (625)
T TIGR02188       292 GHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW--------------------  351 (625)
T ss_pred             ccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc--------------------
Confidence            8765 6667999999999853     7899999999999999999999998886532110                    


Q ss_pred             HHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccCC
Q 007257          305 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFPD  381 (611)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~~  381 (611)
                                     .+.        ..+++||.++++|+++++++.+++.+.++   +++++.||+||+++.+....+.
T Consensus       352 ---------------~~~--------~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~  408 (625)
T TIGR02188       352 ---------------VKK--------HDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG  408 (625)
T ss_pred             ---------------ccc--------CCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCC
Confidence                           000        11258999999999999999999998875   7899999999999876655443


Q ss_pred             -CccccCccCCCccCeeEEEeecCCCCCCCCC-CCCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEEE
Q 007257          382 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQI  454 (611)
Q Consensus       382 -~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~-~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~  454 (611)
                       ....++++|+|++++++++++ +++.  +++ .++.|||+|+|  |+++.|||++++.+.+.+   .+|||+|||+|++
T Consensus       409 ~~~~~~~~~G~p~~g~~~~i~d-~~g~--~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~  485 (625)
T TIGR02188       409 ATPTKPGSATLPFFGIEPAVVD-EEGN--PVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARR  485 (625)
T ss_pred             CCCcCCCcccCCcCCceEEEEC-CCCC--CCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEE
Confidence             233458899999999999998 5554  344 67899999999  689999999999888776   3799999999999


Q ss_pred             ccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcH
Q 007257          455 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  531 (611)
Q Consensus       455 ~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~  531 (611)
                      |+||++++.||.||+|++ +|++|+|.+||++|.+||+|.||+|++.++.   +.++|+|+++++..             
T Consensus       486 d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~-------------  551 (625)
T TIGR02188       486 DKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYE-------------  551 (625)
T ss_pred             cCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCC-------------
Confidence            999999999999999997 8999999999999999999999999997755   48899999886531             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          532 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       532 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                          ..    +.+.++|+++++ +.|+.+++|+.|+++++.      |+|++||++|+.|++.+..
T Consensus       552 ----~~----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~r~~l~~~~~~  602 (625)
T TIGR02188       552 ----PD----DELRKELRKHVR-KEIGPIAKPDKIRFVPGL------PKTRSGKIMRRLLRKIAAG  602 (625)
T ss_pred             ----CC----HHHHHHHHHHHH-hhcCCCccCcEEEECCCC------CCCCCccchHHHHHHHHcC
Confidence                11    123455666665 679999999999998665      9999999999999988754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=6.4e-67  Score=565.69  Aligned_cols=486  Identities=21%  Similarity=0.193  Sum_probs=381.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++|+++|+.+.   +.     +++||+||.++++++|+.|.+.   +||+|+++++|++++++++|||+++|++++|
T Consensus        28 ~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G~v~vp   96 (539)
T PRK06334         28 LCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKIPVM   96 (539)
T ss_pred             HHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcCCeeEe
Confidence            57889999998765   22     4899999999999999999873   8999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc---
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG---  158 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  158 (611)
                      +++.++.+++.++|+.+++++++++++....+.............++.+++....            ..+.+.....   
T Consensus        97 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~  164 (539)
T PRK06334         97 INWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSFWEKCRIGIYM  164 (539)
T ss_pred             cCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccHHHhhhhhhhh
Confidence            9999999999999999999999998776554422111100011123333321100            0000000000   


Q ss_pred             --cc----cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHH
Q 007257          159 --KV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  232 (611)
Q Consensus       159 --~~----~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~  232 (611)
                        ..    .........++++++++|||||||.||+|.+||+++..........+     .+..+|++++.+|++|.+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~  239 (539)
T PRK06334        165 SIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMSFLPPFHAYGF  239 (539)
T ss_pred             cCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEEecchHhhhhh
Confidence              00    00112245679999999999999999999999999988776655554     67889999999999999998


Q ss_pred             HH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007257          233 VI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  309 (611)
Q Consensus       233 ~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (611)
                      .. .+.++..|+++++...  ++..+++.|+++++|+++++|++++.|++......                        
T Consensus       240 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  295 (539)
T PRK06334        240 NSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE------------------------  295 (539)
T ss_pred             HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc------------------------
Confidence            75 5667899999988753  89999999999999999999999998875322110                        


Q ss_pred             cCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCc
Q 007257          310 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT  388 (611)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~  388 (611)
                                           ..+++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++..........++
T Consensus       296 ---------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  354 (539)
T PRK06334        296 ---------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESC  354 (539)
T ss_pred             ---------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCc
Confidence                                 1125899999999999999999999988 689999999999998776654443334478


Q ss_pred             cCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc--cCCccccCceEEEccCCeEEEEecc
Q 007257          389 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       389 ~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      +|+|+++++++++| +++ ..+++.|+.|||+|+|++++.||+++++.+....  .+|||+|||+|++|++|++++.||.
T Consensus       355 vG~p~~g~~v~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~  432 (539)
T PRK06334        355 VGMPIRGMDVLIVS-EET-KVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRL  432 (539)
T ss_pred             CceecCCCEEEEEc-CCC-CccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEecc
Confidence            99999999999998 433 3567788999999999999999999988654322  3679999999999999999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcce------EEEEecCCCC-eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIED------IWVYGDSLKS-MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  539 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~------~~v~~~~~~~-~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (611)
                      +|+|++ +|++|+|.+||++|.+||+|.+      ++|++.++.. .++++++...                    +.  
T Consensus       433 ~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------~~--  489 (539)
T PRK06334        433 SRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPT--------------------SI--  489 (539)
T ss_pred             CCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccC--------------------Ch--
Confidence            999997 9999999999999999999998      7888877554 4455554321                    11  


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       540 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                            +++++++++..++.|+.|+.+.++++.      |+|++||++|++|++....
T Consensus       490 ------~~~~~~l~~~~~~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        490 ------SEVNDILKNSKTSSILKISYHHQVESI------PMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             ------HHHHHHHHhcCCcccccchheeeeccc------ccccCCcccHHHHHHHHHH
Confidence                  234455544457899999999988765      9999999999999887544

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.4e-68  Score=502.29  Aligned_cols=491  Identities=19%  Similarity=0.179  Sum_probs=418.2

Q ss_pred             CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      ++|+++||++|+++.   +      +.+||+||++++.++|..|++.|+++||+|.+.+||..+|++++||++++|+.+|
T Consensus        36 ~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PV  106 (542)
T COG1021          36 DHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPV  106 (542)
T ss_pred             HHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchh
Confidence            368899999999987   3      5799999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhH----HHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHh
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  156 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (611)
                      .--|.....+|.++...+.|+.+|.+....    ..+........+.++.+++.++....           ...+..+ .
T Consensus       107 lALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------~~~~~~~-~  174 (542)
T COG1021         107 LALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------SVLEAAL-C  174 (542)
T ss_pred             hccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------chhhhhh-h
Confidence            998999999999999999999999887533    22223333355778888887554321           1122222 2


Q ss_pred             cccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--
Q 007257          157 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--  234 (611)
Q Consensus       157 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--  234 (611)
                      ..........+.++++++++..+.||||.||.|..+|.....++......+     +++..++++|.+|..|.+.++.  
T Consensus       175 ~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~AHNfplssPG  249 (542)
T COG1021         175 HPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAAHNFPLSSPG  249 (542)
T ss_pred             CccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccccCCCCCCcc
Confidence            222334445677889999999999999999999999999999999888888     8999999999999999999875  


Q ss_pred             HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCC
Q 007257          235 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  313 (611)
Q Consensus       235 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (611)
                      .+..++.|+++|+.+. +|...+.+|+++++|+...+|.....+++..+...                            
T Consensus       250 ~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~----------------------------  301 (542)
T COG1021         250 ALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER----------------------------  301 (542)
T ss_pred             hhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc----------------------------
Confidence            7778999999999877 99999999999999999999999999887654322                            


Q ss_pred             CCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc
Q 007257          314 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  393 (611)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~  393 (611)
                                       ..++|||.+-+||+.+++.+.+++...+|+.+.+.|||.|.-...+...+.......+-|+|+
T Consensus       302 -----------------~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPl  364 (542)
T COG1021         302 -----------------ADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPL  364 (542)
T ss_pred             -----------------CCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCCcC
Confidence                             223599999999999999999999999999999999999966555554443333345667776


Q ss_pred             -cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEE
Q 007257          394 -VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK  471 (611)
Q Consensus       394 -~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~  471 (611)
                       |.-+++|+| .++  .++++||.|+|..+||+-++||++.|+.+.++| .+|||+|||+.++|+||++.+.||.+|+|+
T Consensus       365 sP~DEvrvvD-~dg--~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQIN  441 (542)
T COG1021         365 SPDDEVRVVD-ADG--NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQIN  441 (542)
T ss_pred             CCcceeEEec-CCC--CCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhc
Confidence             788999999 666  477888999999999999999999999999999 899999999999999999999999999999


Q ss_pred             cCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257          472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  548 (611)
Q Consensus       472 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  548 (611)
                       ++|++|..+|||+.|..||.|.+|++|+.+|.   ++.+|+|++++...                 +.        .+|
T Consensus       442 -RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~-----------------~~--------~ql  495 (542)
T COG1021         442 -RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL-----------------RA--------AQL  495 (542)
T ss_pred             -cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC-----------------CH--------HHH
Confidence             79999999999999999999999999998876   69999999987531                 22        245


Q ss_pred             HHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          549 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       549 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +.++.+..+..|++|.+|.+++.      +|.|+-|||+|++|++.+..
T Consensus       496 r~~L~~~GlAa~K~PDrie~v~~------~P~T~VGKIdKk~Lr~~l~~  538 (542)
T COG1021         496 RRFLRERGLAAFKLPDRIEFVDS------LPLTAVGKIDKKALRRRLAS  538 (542)
T ss_pred             HHHHHHcchhhhcCCcceeeccc------CCCcccccccHHHHHHHhhh
Confidence            55555889999999999999865      49999999999999998764

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.1e-66  Score=570.16  Aligned_cols=509  Identities=22%  Similarity=0.240  Sum_probs=397.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++... ++.....+++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++| +++|
T Consensus        34 ~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~p  111 (632)
T PRK07529         34 AAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANP  111 (632)
T ss_pred             HHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEe
Confidence            5788999999987511 1122345799999999999999999999999999999999999999999999999999 5699


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhH-----HHHhccccccccCccEEEEecCCcHH-H-HHHhh-----hCCCcee
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAE-Q-KEMAV-----QTGIKPY  149 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~-----~~~~~~~  149 (611)
                      +++.++++++.++++.++++++|+++...     ..+... ....+.++.++.++..... . .....     .......
T Consensus       112 i~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (632)
T PRK07529        112 INPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEV-LAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARIL  190 (632)
T ss_pred             CCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHH-HhcCCcceeEEEecCcccccccccccccccccccccccC
Confidence            99999999999999999999999976432     111111 1122445555555432100 0 00000     0112234


Q ss_pred             eHHHHHhcccccC-CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhh
Q 007257          150 SWDEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  228 (611)
Q Consensus       150 ~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~  228 (611)
                      .|.+.+....... .......++++++++|||||||.||+|.+||.++...+......+     .+..++++++.+|++|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h  265 (632)
T PRK07529        191 DFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPGDTVFCGLPLFH  265 (632)
T ss_pred             CHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCCCEEEEecCchh
Confidence            5555544432221 112234679999999999999999999999999988776655555     6788999999999999


Q ss_pred             HHHHHH-HHHHhhcCceEEEecC----C---hHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 007257          229 ILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  300 (611)
Q Consensus       229 ~~g~~~-~~~~l~~G~~~~~~~~----~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  300 (611)
                      .++... .+.++..|+++++.+.    +   ...+++.++++++|++.++|+++..|.+....                 
T Consensus       266 ~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------------  328 (632)
T PRK07529        266 VNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-----------------  328 (632)
T ss_pred             hhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-----------------
Confidence            999876 5667999999998753    2   35788999999999999999999988642100                 


Q ss_pred             HHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccC
Q 007257          301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP  380 (611)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~  380 (611)
                                                   ...+++||.+++||+++++++.+.|.+.+|+++++.||+||+++++..+..
T Consensus       329 -----------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~  379 (632)
T PRK07529        329 -----------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPP  379 (632)
T ss_pred             -----------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCc
Confidence                                         011258999999999999999999999999999999999999987776655


Q ss_pred             CCccccCccCCCccCeeEEEeecCCCCC--CCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccC
Q 007257          381 DEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  457 (611)
Q Consensus       381 ~~~~~~~~~G~~~~~~~v~i~~~~~~~~--~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~d  457 (611)
                      ......+++|.|+|+++++++..++++.  .+++.|+.|||+|+||+++.||++++. +...| .+|||+|||+|++|+|
T Consensus       380 ~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~d  458 (632)
T PRK07529        380 DGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDAD  458 (632)
T ss_pred             cccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCC
Confidence            4444568999999999999976333331  567788999999999999999998654 45555 7899999999999999


Q ss_pred             CeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHH
Q 007257          458 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  534 (611)
Q Consensus       458 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~  534 (611)
                      |++++.||.||+|++ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++|+|++.++..        .       
T Consensus       459 G~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~--------~-------  522 (632)
T PRK07529        459 GYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS--------A-------  522 (632)
T ss_pred             ceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC--------C-------
Confidence            999999999999996 9999999999999999999999999997765   47899999876420        0       


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCC-CcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          535 CSLVQLQNYILSELKNAAERNKLR-GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       535 ~~~~~~~~~~~~~l~~~~~~~~l~-~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                       +.        +++.++++ .+++ .+++|+.|.++++.      |+|++||++|++|++.+..
T Consensus       523 -~~--------~~l~~~~~-~~l~~~~~~P~~i~~v~~l------P~t~~GKi~r~~Lr~~~~~  570 (632)
T PRK07529        523 -TE--------AELLAFAR-DHIAERAAVPKHVRILDAL------PKTAVGKIFKPALRRDAIR  570 (632)
T ss_pred             -CH--------HHHHHHHH-HhcchhccCCcEEEEecCC------CCCCCCcccHHHHHHHHHH
Confidence             11        23344443 4554 57899999999765      9999999999999998744

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.3e-66  Score=571.30  Aligned_cols=507  Identities=19%  Similarity=0.222  Sum_probs=400.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++||++|+++.   +..++..+++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        76 ~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~  152 (637)
T PRK00174         76 HLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSV  152 (637)
T ss_pred             hhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence            46789999999986   333345689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH---------HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  152 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  152 (611)
                      +++.++.+++.++++.++++++|+++....         .+... ....+....++.........    .........|+
T Consensus       153 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  227 (637)
T PRK00174        153 VFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEA-LANCPSVEKVIVVRRTGGDV----DWVEGRDLWWH  227 (637)
T ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHH-HHhCCCccEEEEEcCCCCCc----CcCCCCcccHH
Confidence            999999999999999999999999865321         11111 11123444555544221100    00011233455


Q ss_pred             HHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhc-ccccccccCCCCCCcEEEEecchhhHHH
Q 007257          153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMTVDDVYLSFLPLAHILD  231 (611)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~g  231 (611)
                      ++.... ..........++++++++|||||||.||+|+++|.+++...... ...+     ++..+|++++..|++|..+
T Consensus       228 ~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~  301 (637)
T PRK00174        228 ELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWCTADVGWVTG  301 (637)
T ss_pred             HHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEEcCCchHhhh
Confidence            555432 22222334577899999999999999999999999987554332 2223     6778899999999999988


Q ss_pred             HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  305 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (611)
                      ... ++.++..|+++++++.     ++..+++.|+++++|++.++|++++.|.+......                    
T Consensus       302 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------  361 (637)
T PRK00174        302 HSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP--------------------  361 (637)
T ss_pred             hHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc--------------------
Confidence            765 6667999999999753     68999999999999999999999988865311100                    


Q ss_pred             HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccCCC
Q 007257          306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFPDE  382 (611)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~~~  382 (611)
                                             ....+++||.++++|+++++++.+++.+.++   +++++.||+||+++......+..
T Consensus       362 -----------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  418 (637)
T PRK00174        362 -----------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA  418 (637)
T ss_pred             -----------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC
Confidence                                   0011248999999999999999999998875   78999999999998766544332


Q ss_pred             -ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEEEcc
Q 007257          383 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQILP  456 (611)
Q Consensus       383 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~  456 (611)
                       ...++++|.|+++++++++| +++.  +++.++.|||+|+|  |+++.||+++++.+.+.+   .+|||+|||+|++|+
T Consensus       419 ~~~~~~~vG~p~~g~~~~i~d-~~g~--~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~  495 (637)
T PRK00174        419 TPLKPGSATRPLPGIQPAVVD-EEGN--PLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDE  495 (637)
T ss_pred             CCcCCCcccCCCCCceEEEEC-CCCC--CCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcC
Confidence             23457899999999999998 5554  45677899999999  689999999999888776   478999999999999


Q ss_pred             CCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHH
Q 007257          457 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  533 (611)
Q Consensus       457 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~  533 (611)
                      ||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.++..               
T Consensus       496 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~---------------  559 (637)
T PRK00174        496 DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEE---------------  559 (637)
T ss_pred             CCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCC---------------
Confidence            9999999999999997 8999999999999999999999999997654   47999999876430               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          534 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       534 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                        ..    +.+.++|+++++ +.|+.+++|..++++++.      |+|++||++|++|++.+..
T Consensus       560 --~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~  610 (637)
T PRK00174        560 --PS----DELRKELRNWVR-KEIGPIAKPDVIQFAPGL------PKTRSGKIMRRILRKIAEG  610 (637)
T ss_pred             --CC----HHHHHHHHHHHH-hhcCCccCCCEEEEcCCC------CCCCCcchHHHHHHHHHcC
Confidence              01    223345666664 679999999999998665      9999999999999987643

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.7e-67  Score=568.35  Aligned_cols=487  Identities=20%  Similarity=0.198  Sum_probs=395.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        58 ~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~  128 (549)
T PRK07788         58 AARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL  128 (549)
T ss_pred             HHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence            57889999999976   3      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.+++++++++++|++++....+... .........++...+...       .....+..++++...... 
T Consensus       129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-  199 (549)
T PRK07788        129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLDDLIAGSST-  199 (549)
T ss_pred             eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHHHHhcCCCC-
Confidence            99999999999999999999999998765544322 112222333322221110       011234566666544321 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                        ...+..++++++++|||||||.||+|.++|.++...+......+     .+..++++++..|++|.+|+...+.++..
T Consensus       200 --~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~l~~  272 (549)
T PRK07788        200 --APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGWAHLTLAMAL  272 (549)
T ss_pred             --CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHHHHHHHHHHh
Confidence              12233467889999999999999999999999988877665555     67788999999999999998877778999


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++... ++..+++.++++++|+++++|+++..+++.......                                  
T Consensus       273 G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------------------------------  318 (549)
T PRK07788        273 GSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA----------------------------------  318 (549)
T ss_pred             CCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC----------------------------------
Confidence            999988765 999999999999999999999999988653221000                                  


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  400 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  400 (611)
                               ...+++||.+++||+++++++.+.+.+.++.++++.||+||++..+..........++++|.|++++++++
T Consensus       319 ---------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i  389 (549)
T PRK07788        319 ---------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKI  389 (549)
T ss_pred             ---------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEE
Confidence                     00125899999999999999999999999999999999999987665444332334578999999999999


Q ss_pred             eecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCc
Q 007257          401 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL  480 (611)
Q Consensus       401 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~  480 (611)
                      +| +++.  +++.|+.|||+++|+.++.||+++++.   ...+|||+|||+|++|+||++++.||.||+|++ +|++|+|
T Consensus       390 ~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v~p  462 (549)
T PRK07788        390 LD-ENGN--EVPRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENVFP  462 (549)
T ss_pred             EC-CCcC--CCCCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEEE-CCEEECH
Confidence            98 5543  556688999999999999999998765   345899999999999999999999999999996 9999999


Q ss_pred             HHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCC
Q 007257          481 EYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKL  557 (611)
Q Consensus       481 ~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  557 (611)
                      .+||++|.+||+|.+++|++.++.   +.++|+|+++++..        .        +        .++|+++++ ++|
T Consensus       463 ~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~--------~--------~--------~~~l~~~~~-~~l  517 (549)
T PRK07788        463 AEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAA--------L--------D--------EDAIKDYVR-DNL  517 (549)
T ss_pred             HHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCC--------C--------C--------HHHHHHHHH-Hhh
Confidence            999999999999999999997765   37899999876420        0        1        134455554 679


Q ss_pred             CCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          558 RGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       558 ~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                      +.|++|+.++++++.      |+|++||++|++|+++
T Consensus       518 ~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~  548 (549)
T PRK07788        518 ARYKVPRDVVFLDEL------PRNPTGKVLKRELREM  548 (549)
T ss_pred             hcCCCCcEEEEeCCC------CCCCCcCEeHHHhhcc
Confidence            999999999998665      9999999999999753

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.2e-66  Score=563.22  Aligned_cols=494  Identities=19%  Similarity=0.202  Sum_probs=404.1

Q ss_pred             cCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCC
Q 007257            5 KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD   84 (611)
Q Consensus         5 ~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~   84 (611)
                      .+||++|+.+.   ++.  ..+.+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus        56 ~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~  130 (570)
T PRK04319         56 GRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFE  130 (570)
T ss_pred             CCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEccccc
Confidence            57999999886   332  3479999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccCCc
Q 007257           85 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME  164 (611)
Q Consensus        85 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (611)
                      .++.+++.++++.++++++++++.........   ..+..+.++.+++...        ......++.++..... ....
T Consensus       131 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~  198 (570)
T PRK04319        131 AFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPSLKHVLLVGEDVE--------EGPGTLDFNALMEQAS-DEFD  198 (570)
T ss_pred             ccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCCceEEEEECCCcC--------CCcCccCHHHHHhhcC-CcCC
Confidence            99999999999999999999988765443211   2234455555543211        0112345555554332 1222


Q ss_pred             CCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhhcCc
Q 007257          165 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGA  243 (611)
Q Consensus       165 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~  243 (611)
                      ..+..++++++++|||||||.||+|.++|.++...+......+     ++..+|++++..|++|.+|+.. ++.++..|+
T Consensus       199 ~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~  273 (570)
T PRK04319        199 IEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWVTGTSYGIFAPWLNGA  273 (570)
T ss_pred             ccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHhhCchHHHHHHHhcCc
Confidence            3345678999999999999999999999999988777665555     6788999999999999988765 666799999


Q ss_pred             eEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 007257          244 SVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  321 (611)
Q Consensus       244 ~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (611)
                      ++++...  ++..+++.++++++|+++++|++++.+.+.....                                   ..
T Consensus       274 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~  318 (570)
T PRK04319        274 TNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL-----------------------------------VK  318 (570)
T ss_pred             eEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc-----------------------------------cc
Confidence            9988754  8999999999999999999999999886421100                                   00


Q ss_pred             HHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEe
Q 007257          322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE  401 (611)
Q Consensus       322 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~  401 (611)
                      .        ..+++||.+++||+++++++.+++.+.+|.++++.||+||+++.+..........++++|.|+|+++++++
T Consensus       319 ~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~  390 (570)
T PRK04319        319 K--------YDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIV  390 (570)
T ss_pred             c--------CCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEE
Confidence            0        11248999999999999999999999899999999999999987665444333445889999999999999


Q ss_pred             ecCCCCCCCCCCCCCcEEEEec--CCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecC
Q 007257          402 EVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  479 (611)
Q Consensus       402 ~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~  479 (611)
                      + +++.  +++.|+.|||+++|  ++++.||+++++.+.+.|.+|||+|||+++++++|++++.||.+|+|++ +|++|+
T Consensus       391 d-~~~~--~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~i~  466 (570)
T PRK04319        391 D-DQGN--ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKT-SGERVG  466 (570)
T ss_pred             C-CCCC--CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEecCCCEEEE-CCEEEC
Confidence            8 5554  34678899999997  8999999999999999999999999999999999999999999999997 899999


Q ss_pred             cHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCC
Q 007257          480 LEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  556 (611)
Q Consensus       480 ~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  556 (611)
                      |.+||+.|.+||+|.+++|++.++.   +.+++++++.++..                 ..    +.+.++|.++++ ++
T Consensus       467 p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~-----------------~~----~~~~~~l~~~~~-~~  524 (570)
T PRK04319        467 PFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYE-----------------PS----EELKEEIRGFVK-KG  524 (570)
T ss_pred             HHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCC-----------------CC----HHHHHHHHHHHH-Hh
Confidence            9999999999999999999997765   47888888776420                 11    123345666664 67


Q ss_pred             CCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHH
Q 007257          557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  595 (611)
Q Consensus       557 l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  595 (611)
                      |+.|++|+.++++++.      |+|++||++|++|+++.
T Consensus       525 l~~~~~P~~i~~v~~i------P~t~~GKv~r~~L~~~~  557 (570)
T PRK04319        525 LGAHAAPREIEFKDKL------PKTRSGKIMRRVLKAWE  557 (570)
T ss_pred             cccccCCcEEEEeCCC------CCCCchhhhHHHHHHHH
Confidence            9999999999998665      99999999999999875

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-65  Score=566.36  Aligned_cols=513  Identities=17%  Similarity=0.159  Sum_probs=396.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++.+||++|+++.   +..++..+.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        62 ~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~  138 (629)
T PRK10524         62 HLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSV  138 (629)
T ss_pred             hhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEe
Confidence            45678999999986   433445689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhH---------HHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  152 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  152 (611)
                      +++.++.+++.++|++++++++|+++...         ..+.............++.++......    .........|.
T Consensus       139 ~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~~~~~~~~  214 (629)
T PRK10524        139 VFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----ARVAGRDVDYA  214 (629)
T ss_pred             eCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----CcccCCcccHH
Confidence            99999999999999999999999976421         111111111112234455544221000    00011123455


Q ss_pred             HHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhh-cccccccccCCCCCCcEEEEecchhhHHH
Q 007257          153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILD  231 (611)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~g  231 (611)
                      ++...............++++++++|||||||.||+|+++|.++...... ....+     ++..+|++++..|+.|..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~  289 (629)
T PRK10524        215 TLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFFCASDIGWVVG  289 (629)
T ss_pred             HHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEEEcCCCCeecc
Confidence            55433222222223346789999999999999999999999987644433 22233     6788899999999999888


Q ss_pred             HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  305 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (611)
                      ... ++.++..|+++++++.     ++..+++.++++++|+++++|++++.|.+....                      
T Consensus       290 ~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------  347 (629)
T PRK10524        290 HSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA----------------------  347 (629)
T ss_pred             chHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc----------------------
Confidence            755 5667899999998763     688999999999999999999999877542100                      


Q ss_pred             HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC---C
Q 007257          306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD---E  382 (611)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~---~  382 (611)
                                   .....        .+++||.+++||+++++++.+++.+.+++++++.||+||++.........   .
T Consensus       348 -------------~~~~~--------~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  406 (629)
T PRK10524        348 -------------LLRKH--------DLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDR  406 (629)
T ss_pred             -------------ccccc--------ChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccC
Confidence                         00011        12489999999999999999999999999999999999998543332221   1


Q ss_pred             ccccCccCCCccCeeEEEeecC-CCCCCCCCCCCCcEEEEecC---CcccccCCChHhhhhhc----cCCccccCceEEE
Q 007257          383 MCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDGWFHTGDIGQI  454 (611)
Q Consensus       383 ~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~----~~g~~~TGD~~~~  454 (611)
                      ....+++|.|+++++++++| + ++  .+++.|+.|||+++||   +.+.+|+++++.+.+.+    .+|||+|||+|++
T Consensus       407 ~~~~~~~G~p~~g~~~~i~d-~~~g--~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~  483 (629)
T PRK10524        407 PTRLGSPGVPMYGYNVKLLN-EVTG--EPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIR  483 (629)
T ss_pred             cCCCCCcccCcCCceEEEEe-CCCC--CCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEE
Confidence            23457899999999999998 4 43  4567788999999998   57789999998877654    3589999999999


Q ss_pred             ccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcH
Q 007257          455 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  531 (611)
Q Consensus       455 ~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~  531 (611)
                      |+||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++++++++++...            
T Consensus       484 d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~------------  550 (629)
T PRK10524        484 DADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSL------------  550 (629)
T ss_pred             cCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCcc------------
Confidence            999999999999999997 8999999999999999999999999998766   478999998764210            


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          532 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       532 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                          +..+..+.+.++|+++++ +.|+.+++|+.|++++..      |+|++||++|++|++.+.
T Consensus       551 ----~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~  604 (629)
T PRK10524        551 ----ADREARLALEKEIMALVD-SQLGAVARPARVWFVSAL------PKTRSGKLLRRAIQAIAE  604 (629)
T ss_pred             ----ccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEcCCC------CCCCCcchHHHHHHHHHc
Confidence                111223345566777775 789999999999998665      999999999999998764

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.1e-65  Score=564.93  Aligned_cols=503  Identities=20%  Similarity=0.194  Sum_probs=390.7

Q ss_pred             cCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCC
Q 007257            5 KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD   84 (611)
Q Consensus         5 ~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~   84 (611)
                      .+||++|+++.   + +.+..+++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus        96 ~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~  171 (655)
T PRK03584         96 RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSP  171 (655)
T ss_pred             CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCC
Confidence            47999999987   3 3456689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHhhcCccEEEEcchhHH--------HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHh
Q 007257           85 TLGPGAVNFILDHAEIDFVFVQDKKVK--------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  156 (611)
Q Consensus        85 ~~~~~~l~~~l~~~~~~~li~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (611)
                      .++.+++.++|+.++++++|+++....        ..........+....++.+......   ...........|.++..
T Consensus       172 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~  248 (655)
T PRK03584        172 DFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPA---AAAAALPGALLWEDFLA  248 (655)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCc---ccccccCCcccHHHHhh
Confidence            999999999999999999999875321        0111111122334445544422100   00001112345666654


Q ss_pred             cccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHh-hhhcccccccccCCCCCCcEEEEecchhhHHHHHHH
Q 007257          157 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE  235 (611)
Q Consensus       157 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~  235 (611)
                      ..........+..++++++|+|||||||.||||+++|.+++.. .......+     ++..+|++++..++.|..+. ..
T Consensus       249 ~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~-~~  322 (655)
T PRK03584        249 PAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFFWYTTCGWMMWN-WL  322 (655)
T ss_pred             ccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEEEcCCchHHhHH-HH
Confidence            2222222334557799999999999999999999999987543 44333334     67889999999999987543 35


Q ss_pred             HHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007257          236 EYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  310 (611)
Q Consensus       236 ~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (611)
                      +.++..|+++++++.     ++..+++.++++++|++.++|+++..+.+...                            
T Consensus       323 ~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------------------------  374 (655)
T PRK03584        323 VSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL----------------------------  374 (655)
T ss_pred             HHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC----------------------------
Confidence            678999999999753     78999999999999999999999987754100                            


Q ss_pred             CCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc--CCceeeccccCCCCCceeeccCCCccccCc
Q 007257          311 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCMVGT  388 (611)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~  388 (611)
                            .+ ....        .+++||.+++||+++++++.+++.+.+  ++++.+.||+||+++.+....+......++
T Consensus       375 ------~~-~~~~--------~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~  439 (655)
T PRK03584        375 ------VP-GETH--------DLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGE  439 (655)
T ss_pred             ------Cc-cccC--------ChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCc
Confidence                  00 0011        124899999999999999999999887  478999999999876544333333344588


Q ss_pred             cCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecC--CcccccCCChHhhh--hhc---cCCccccCceEEEccCCeEE
Q 007257          389 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ESI---IDGWFHTGDIGQILPNGVVK  461 (611)
Q Consensus       389 ~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~--~~~---~~g~~~TGD~~~~~~dG~l~  461 (611)
                      +|.|.+|++++++| +++..  + .++.|||+|+||  +++.||+++++.++  ..+   .+|||+|||+|++|+||+++
T Consensus       440 ~g~p~~g~~~~ivd-~~g~~--~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~  515 (655)
T PRK03584        440 IQCRGLGMAVEAWD-EDGRP--V-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVV  515 (655)
T ss_pred             cCCCcCCceeEEEC-CCCCC--C-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEE
Confidence            99999999999998 66543  3 578999999996  78999999987543  222   26899999999999999999


Q ss_pred             EEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccH
Q 007257          462 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  538 (611)
Q Consensus       462 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (611)
                      +.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.++.   +.++++|+++++..                 .. 
T Consensus       516 i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~-----------------~~-  576 (655)
T PRK03584        516 IYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVT-----------------LD-  576 (655)
T ss_pred             EEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCC-----------------Cc-
Confidence            99999999996 9999999999999999999999999998764   48999999876420                 11 


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          539 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       539 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                         +.+.++|+++++ ..|+.|++|..|+++++.      |+|++||++|++|++.+.
T Consensus       577 ---~~~~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~t~sGKi~r~~lr~~~~  624 (655)
T PRK03584        577 ---DALRARIRTTIR-TNLSPRHVPDKIIAVPDI------PRTLSGKKVELPVKKLLH  624 (655)
T ss_pred             ---HHHHHHHHHHHH-hhCCCCcCCCEEEECCCC------CCCCCccchHHHHHHHHc
Confidence               223445666665 779999999999998765      999999999999998874

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=5.7e-65  Score=553.15  Aligned_cols=495  Identities=23%  Similarity=0.269  Sum_probs=399.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .++++||++|+++.   +...++++.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        33 ~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vp  109 (547)
T PRK13295         33 CVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNP  109 (547)
T ss_pred             HHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEec
Confidence            46789999999986   434556689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhH----HHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  157 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (611)
                      ++|.++.+++.++++.++++++++++...    ...........+....++.++...             ..++.++...
T Consensus       110 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  176 (547)
T PRK13295        110 LMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------ADSFEALLIT  176 (547)
T ss_pred             cccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------ccCHHHHhhC
Confidence            99999999999999999999999987531    111111111223445555554321             1123333221


Q ss_pred             cc-------ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHH
Q 007257          158 GK-------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  230 (611)
Q Consensus       158 ~~-------~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~  230 (611)
                      ..       ..........++++++++|||||||.||+|+++|.++...+......+     ++..++++++..|++|..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~  251 (547)
T PRK13295        177 PAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVILMASPMAHQT  251 (547)
T ss_pred             CccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeEEEecCchhhh
Confidence            10       011112234678999999999999999999999999988887766555     678899999999999999


Q ss_pred             HHHH-HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007257          231 DRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  308 (611)
Q Consensus       231 g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (611)
                      ++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.......                        
T Consensus       252 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~------------------------  307 (547)
T PRK13295        252 GFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES------------------------  307 (547)
T ss_pred             hHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc------------------------
Confidence            8766 5667999999998876 8999999999999999999999998876532110                        


Q ss_pred             hcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-ccccC
Q 007257          309 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG  387 (611)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~  387 (611)
                                           ...+++||.+++||+++++++.+++.+.+++++++.||+||++.+.+.+.... .....
T Consensus       308 ---------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  366 (547)
T PRK13295        308 ---------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERAST  366 (547)
T ss_pred             ---------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccC
Confidence                                 01125899999999999999999999989999999999999988766554322 22346


Q ss_pred             ccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccC
Q 007257          388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       388 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      ++|.|++++++++++ +++  .+++.|+.|||+|+|+.++.||+++++.+... .+|||+|||+|+++++|.+++.||.+
T Consensus       367 ~~G~~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g~l~~~gR~~  442 (547)
T PRK13295        367 TDGCPLPGVEVRVVD-ADG--APLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADGYIRISGRSK  442 (547)
T ss_pred             ccccccCCcEEEEEC-CCC--CCCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCCceEEEEeccC
Confidence            789999999999998 554  45667889999999999999999999888766 68899999999999999999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      |++++ +|++|+|.+||++|.++|+|.+++|++.++.   +.++++|+++++..        .        +        
T Consensus       443 ~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------~--------  497 (547)
T PRK13295        443 DVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQS--------L--------D--------  497 (547)
T ss_pred             CeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCC--------C--------C--------
Confidence            99996 9999999999999999999999999997654   47899998875320        0        1        


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .+++.+++.+..++.|++|+.++++++.      |+|++||++|++|++++.+
T Consensus       498 ~~~l~~~~~~~~l~~~~~P~~i~~v~~l------P~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        498 FEEMVEFLKAQKVAKQYIPERLVVRDAL------PRTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             HHHHHHHHHhccCccccCCcEEEEeccC------CCCCCccccHHHHHHHHhc
Confidence            1234444444579999999999999765      9999999999999887754

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=5.3e-65  Score=561.43  Aligned_cols=503  Identities=19%  Similarity=0.173  Sum_probs=385.1

Q ss_pred             cCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCC
Q 007257            5 KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD   84 (611)
Q Consensus         5 ~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~   84 (611)
                      ++++++|+++.   + +++..+.+||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus        96 ~~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~  171 (652)
T TIGR01217        96 AAGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSP  171 (652)
T ss_pred             cCCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCC
Confidence            46889999987   3 4455689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHhhcCccEEEEcchhH---------HHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHH
Q 007257           85 TLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL  155 (611)
Q Consensus        85 ~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (611)
                      .++.+++.++|++++|+++|+++...         ..+.. .....+.++.++.+.........  .........|+++.
T Consensus       172 ~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~  248 (652)
T TIGR01217       172 DFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAE-VRKELPTLRAVVHIPYLGPRETE--APKIDGALDLEDFT  248 (652)
T ss_pred             CCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHH-HHhcCCCccEEEEEeCCCCcccc--cccccCcccHHHHH
Confidence            99999999999999999999987531         11111 11122444555554322100000  00001234566665


Q ss_pred             hcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHH-hhhhcccccccccCCCCCCcEEEEecchhhHHHHHH
Q 007257          156 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  234 (611)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~  234 (611)
                      ..............++++++|+|||||||.||||+++|.+++. ........+     ++..+|++++..|+.|..+ .+
T Consensus       249 ~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~-~~  322 (652)
T TIGR01217       249 AAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLFYYTTTGWMMW-NW  322 (652)
T ss_pred             hcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEEEeCCcchhhh-HH
Confidence            4422222223345678999999999999999999999998654 333333333     6788999999999999754 33


Q ss_pred             HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007257          235 EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  309 (611)
Q Consensus       235 ~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (611)
                      ++.++..|+++++++.     ++..+++.++++++|++..+|.++..+.....                           
T Consensus       323 ~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~---------------------------  375 (652)
T TIGR01217       323 LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGV---------------------------  375 (652)
T ss_pred             HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCC---------------------------
Confidence            5578999999999853     67899999999999999887777655432100                           


Q ss_pred             cCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC--CceeeccccCCCCCceeeccCCCccccC
Q 007257          310 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFPDEMCMVG  387 (611)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~--~~v~~~yG~tE~g~~~~~~~~~~~~~~~  387 (611)
                             .+ ....+        +++||.+++||++++++..+++.+.++  ..+.+.||+||+++......+......+
T Consensus       376 -------~~-~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g  439 (652)
T TIGR01217       376 -------HP-ARTHD--------LSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIG  439 (652)
T ss_pred             -------Cc-cccCC--------hhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCC
Confidence                   00 01111        249999999999999999999988875  4677899999975444332222233457


Q ss_pred             ccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecC--CcccccCCChHhhh--hh-c--cCCccccCceEEEccCCeE
Q 007257          388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--IDGWFHTGDIGQILPNGVV  460 (611)
Q Consensus       388 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~--~~~~gy~~~~~~~~--~~-~--~~g~~~TGD~~~~~~dG~l  460 (611)
                      ++|.|.+|++++++| +++...   .|+.|||+++||  +++.|||++++.++  +. |  .+|||+|||+|++|+||++
T Consensus       440 ~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l  515 (652)
T TIGR01217       440 EIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGI  515 (652)
T ss_pred             ccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcE
Confidence            889999999999998 665533   378999999996  68899999998654  22 3  2689999999999999999


Q ss_pred             EEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhcc
Q 007257          461 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  537 (611)
Q Consensus       461 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  537 (611)
                      ++.||.||+|++ +|++|+|.|||++|.+||+|.||+|++.++.   +.++|+|+++++..                 ..
T Consensus       516 ~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~-----------------~~  577 (652)
T TIGR01217       516 VIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGAT-----------------LD  577 (652)
T ss_pred             EEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCC-----------------CC
Confidence            999999999996 9999999999999999999999999998765   48999999876420                 11


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          538 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       538 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                          +.+.++|+++++ ..|+.|++|+.|++++..      |+|++||++|+.|++.+.
T Consensus       578 ----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       578 ----DALLDRIKRTIR-AGLSPRHVPDEIIEVPGI------PHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             ----HHHHHHHHHHHH-hhCCCCcCCCEEEECCCC------CCCCCccChHHHHHHHHc
Confidence                223455666665 789999999999998765      999999999999998873

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=3.5e-64  Score=556.90  Aligned_cols=508  Identities=19%  Similarity=0.161  Sum_probs=382.9

Q ss_pred             ccCCCCCceeeeccccCC--CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            4 QKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         4 ~~~pd~~a~~~~~~~~~~--~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++||++|+++.   +..  ++.++++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus       186 ~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vp  262 (728)
T PLN03052        186 SKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVS  262 (728)
T ss_pred             ccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEe
Confidence            468999999987   321  335689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHH-----hccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHh
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL-----LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  156 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (611)
                      ++|.++.+++.+++++++|+++|+++.....-     .........  ..++++.......   ..........|+++..
T Consensus       263 i~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~---~~~~~~~~~~~~~~~~  337 (728)
T PLN03052        263 IADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV---RVKLREGDMSWDDFLA  337 (728)
T ss_pred             eCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc---ccccccCCccHHHHHh
Confidence            99999999999999999999999987542100     000000001  1222222111000   0000012345777654


Q ss_pred             ccccc----CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHH
Q 007257          157 LGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  232 (611)
Q Consensus       157 ~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~  232 (611)
                      .....    ........++++++|+|||||||.||||+++|.+++.........+     ++..+|++++..|++|+++.
T Consensus       338 ~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~~d~~~~~~~l~w~~g~  412 (728)
T PLN03052        338 RANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRKGDIVCWPTNLGWMMGP  412 (728)
T ss_pred             ccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCCCcEEEECCCcHHHhHH
Confidence            32111    1111223568999999999999999999999998876655444334     67889999999999999998


Q ss_pred             HHHHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007257          233 VIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  310 (611)
Q Consensus       233 ~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (611)
                      ...+.++..|++++++++  ++..+++.++++++|++.++|+++..|.+..                             
T Consensus       413 ~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-----------------------------  463 (728)
T PLN03052        413 WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-----------------------------  463 (728)
T ss_pred             HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC-----------------------------
Confidence            767788999999999976  5578999999999999999999998875421                             


Q ss_pred             CCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC-CceeeccccCCCCCceeeccCCCccccCcc
Q 007257          311 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTA  389 (611)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~  389 (611)
                              ..+..++        ++||.++++|++++++...++.+.++ .++.+.||+||+++.+....+.....++++
T Consensus       464 --------~~~~~dl--------ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~  527 (728)
T PLN03052        464 --------CMAGLDW--------SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAF  527 (728)
T ss_pred             --------CcccCCh--------hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCcc
Confidence                    0011122        48999999999999999888887765 589999999999876554433333345889


Q ss_pred             CCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCC--cccccCCChHhhhhhcc-----CC--ccccCceEEEccCCeE
Q 007257          390 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT--LFSGYYKNPDLTRESII-----DG--WFHTGDIGQILPNGVV  460 (611)
Q Consensus       390 G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~--~~~gy~~~~~~~~~~~~-----~g--~~~TGD~~~~~~dG~l  460 (611)
                      |.|.+|++++++| ++++..+.+..+.|||+++++.  ...+|+++. .....|.     .|  ||+|||++++|+||++
T Consensus       528 g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l  605 (728)
T PLN03052        528 STPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYY  605 (728)
T ss_pred             ccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeE
Confidence            9999999999998 6665433322246999998653  334677654 2222231     23  8999999999999999


Q ss_pred             EEEeccCCeEEcCCceecCcHHHHHHHh-cCcCcceEEEEecCCC----CeEEEEEecC--hHHHHHHHHHCCCCCcHHH
Q 007257          461 KIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIEDIWVYGDSLK----SMLVAVVVPC--EEDTKKWAYSNGHAGSFLE  533 (611)
Q Consensus       461 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~-~~p~V~~~~v~~~~~~----~~~~a~vv~~--~~~~~~~~~~~~~~~~~~~  533 (611)
                      ++.||.||+|++ +|++|+|.|||++|. .||+|.|++|++.++.    +.++++|+++  ++..               
T Consensus       606 ~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~---------------  669 (728)
T PLN03052        606 RAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN---------------  669 (728)
T ss_pred             EEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCC---------------
Confidence            999999999997 999999999999994 8999999999997754    4799999987  3210               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          534 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       534 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                       ++..++.    +.+++.++ +.|+++..|+.|+++++.      |+|.+||++|+.|++.+.+..
T Consensus       670 -~~~~~L~----~~i~~~i~-~~l~~~~~p~~i~~v~~l------P~T~sGKi~Rr~Lr~~~~~~~  723 (728)
T PLN03052        670 -PDLNELK----KIFNSAIQ-KKLNPLFKVSAVVIVPSF------PRTASNKVMRRVLRQQLAQEL  723 (728)
T ss_pred             -CCHHHHH----HHHHHHHH-hhcCCccCCCEEEEcCCC------CCCCchHHHHHHHHHHHHhhh
Confidence             0123334    44444443 678899999999988765      999999999999999887755

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.5e-64  Score=549.20  Aligned_cols=495  Identities=20%  Similarity=0.203  Sum_probs=383.6

Q ss_pred             ccccCCCCCceeeeccccCC----CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 007257            2 SVQKYPGNRMLGWRPFVDGK----FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL   77 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~----~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~   77 (611)
                      .|+++||++|+++.   ++.    ...++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus        15 ~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~   91 (552)
T PRK09274         15 AAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGA   91 (552)
T ss_pred             HHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCe
Confidence            46789999999876   321    12355899999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCChhHHHHHHhhcCccEEEEcch--hHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHH
Q 007257           78 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL  155 (611)
Q Consensus        78 ~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (611)
                      +++|++|.++.+++.+++++++++++|+++.  ....+....   ......++.++...          ......+.++.
T Consensus        92 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~~~~~~~~~~~  158 (552)
T PRK09274         92 VPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------LWGGTTLATLL  158 (552)
T ss_pred             EEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------ccCCccHHHhc
Confidence            9999999999999999999999999998752  112111110   01222233322110          00112344443


Q ss_pred             hcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHH
Q 007257          156 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE  235 (611)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~  235 (611)
                      ..............++++++++|||||||.||+|.++|+++...+......+     ++..+++.++..|++|.++    
T Consensus       159 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~pl~~~~~----  229 (552)
T PRK09274        159 RDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFPLFALFG----  229 (552)
T ss_pred             ccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccCHHHhhh----
Confidence            2211112222345678999999999999999999999999998887766655     6788899999999987654    


Q ss_pred             HHHhhcCceEEEec--------CChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007257          236 EYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  307 (611)
Q Consensus       236 ~~~l~~G~~~~~~~--------~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (611)
                         +..|+++++..        .++..+++.++++++|+++++|+++..|.+......                      
T Consensus       230 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------  284 (552)
T PRK09274        230 ---PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG----------------------  284 (552)
T ss_pred             ---hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC----------------------
Confidence               34577777653        278999999999999999999999999876322110                      


Q ss_pred             hhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc--CCceeeccccCCCCCceeeccCC----
Q 007257          308 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPD----  381 (611)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~g~~~~~~~~~----  381 (611)
                                             ..++++|.+++||+++++++.+.+.+.+  |+++++.||+||++++++.....    
T Consensus       285 -----------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  341 (552)
T PRK09274        285 -----------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFA  341 (552)
T ss_pred             -----------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhcc
Confidence                                   1225899999999999999999999998  57999999999999766543321    


Q ss_pred             -----CccccCccCCCccCeeEEEeecCCC-------CCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc---cCC--
Q 007257          382 -----EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--  444 (611)
Q Consensus       382 -----~~~~~~~~G~~~~~~~v~i~~~~~~-------~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--  444 (611)
                           ......++|+|+++++++|+| +++       ...+++.|+.|||+|+|++++.||+++++.+...|   .+|  
T Consensus       342 ~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~  420 (552)
T PRK09274        342 TRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDV  420 (552)
T ss_pred             ccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCc
Confidence                 011224789999999999998 322       23567788999999999999999999999998876   256  


Q ss_pred             ccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEecChHHHHHHH
Q 007257          445 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWA  522 (611)
Q Consensus       445 ~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~vv~~~~~~~~~~  522 (611)
                      ||+|||+|++|+||++++.||.||+|++ +|.+|+|.+||++|.+||+|.+|+|++.++.  +.++++|++.++...   
T Consensus       421 w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~~~---  496 (552)
T PRK09274        421 WHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGVAC---  496 (552)
T ss_pred             EEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCcccc---
Confidence            9999999999999999999999999997 8999999999999999999999999987655  368888887764210   


Q ss_pred             HHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccc--cccccchHHHHHHHHHHH
Q 007257          523 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT--ATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t--~~GKv~R~~l~~~~~~~~  599 (611)
                                   +..+    +.+.+++++.  ..+.++.|+.+.++++.      |+|  ++||++|++|++++++.+
T Consensus       497 -------------~~~~----l~~~l~~~l~--~~~~~~~~~~~~~~~~l------P~t~~~~GKi~r~~L~~~~~~~~  550 (552)
T PRK09274        497 -------------SKSA----LYQELRALAA--AHPHTAGIERFLIHPSF------PVDIRHNAKIFREKLAVWAAKQL  550 (552)
T ss_pred             -------------chHH----HhhhhHHHHH--hcCCCcceeEEeccCCC------CccccccccccHHHHHHHHHHhh
Confidence                         1122    3344444443  34566778888888654      999  799999999999987754

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-64  Score=548.71  Aligned_cols=498  Identities=19%  Similarity=0.166  Sum_probs=383.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++|+++|+++.   ++    .+.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus        23 ~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~   95 (540)
T PRK05857         23 QARQQPEAIALRRC---DG----TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVM   95 (540)
T ss_pred             HHhhCCCcEEEeec---CC----CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            57889999999865   33    157999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.++++++++++...... ........... ++..+.....        .   ..... ...  ..
T Consensus        96 l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--------~---~~~~~-~~~--~~  159 (540)
T PRK05857         96 ADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT--------R---ESEHS-LDA--AS  159 (540)
T ss_pred             cCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc--------c---ccccc-ccc--cc
Confidence            99999999999999999999999987653211 11111111111 2222211100        0   00000 000  00


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|.++.+........... ......+++.++.+|++|.+++...+.+++.
T Consensus       160 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~  238 (540)
T PRK05857        160 LAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLN-WVTWVVGETTYSPLPATHIGGLWWILTCLMH  238 (540)
T ss_pred             cccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccc-ccccccCceeeecCCccccchHHHHHHHhhc
Confidence            111233467899999999999999999999999997665432211000 0134567899999999999998877888999


Q ss_pred             CceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 007257          242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  321 (611)
Q Consensus       242 G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (611)
                      |+++++.+.++..+++.++++++|+++++|++++.+.......                                     
T Consensus       239 G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~-------------------------------------  281 (540)
T PRK05857        239 GGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA-------------------------------------  281 (540)
T ss_pred             ceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC-------------------------------------
Confidence            9998776668999999999999999999999998886532110                                     


Q ss_pred             HHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC----ccccCccCCCccCee
Q 007257          322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVSVYSE  397 (611)
Q Consensus       322 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G~~~~~~~  397 (611)
                              ...++++|.+++||++++....+++ +.+|+++++.||+||++..........    ....+++|.++++++
T Consensus       282 --------~~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~  352 (540)
T PRK05857        282 --------NATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVD  352 (540)
T ss_pred             --------CCcCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcE
Confidence                    0112489999999999998877644 467999999999999986544332221    113478999999999


Q ss_pred             EEEeecCCCCCCC----CCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcC
Q 007257          398 LRLEEVPEMGYSP----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  473 (611)
Q Consensus       398 v~i~~~~~~~~~~----~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~  473 (611)
                      +++++ +++....    .+.++.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|++|++++.||.+|+|++ 
T Consensus       353 v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~-  430 (540)
T PRK05857        353 VYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIIC-  430 (540)
T ss_pred             EEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEEEeccccccEec-
Confidence            99998 5443221    23467899999999999999999999999999999999999999999999999999999996 


Q ss_pred             CceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 007257          474 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  550 (611)
Q Consensus       474 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  550 (611)
                      +|.+|+|.+||++|..||+|.+|+|++.++.   +.++++++++...                   +....+.+.+.+.+
T Consensus       431 ~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~-------------------~~~~~~~l~~~~~~  491 (540)
T PRK05857        431 GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL-------------------DESAARALKHTIAA  491 (540)
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC-------------------ChhhHHHHHHHHHH
Confidence            9999999999999999999999999998754   3566676665421                   11112334555555


Q ss_pred             HHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          551 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       551 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .++ +.++.|++|+.+.++++.      |+|++||++|++|++.+++
T Consensus       492 ~~~-~~l~~~~~P~~v~~~~~i------P~t~~GKi~r~~l~~~~~~  531 (540)
T PRK05857        492 RFR-RESEPMARPSTIVIVTDI------PRTQSGKVMRASLAAAATA  531 (540)
T ss_pred             HHH-hhhccccCCeEEEEhhcC------CCCCCcceeHHHHHHhhhh
Confidence            554 679999999999999765      9999999999999988865

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=4.4e-64  Score=547.17  Aligned_cols=496  Identities=23%  Similarity=0.280  Sum_probs=390.4

Q ss_pred             ccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeC
Q 007257            4 QKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL   82 (611)
Q Consensus         4 ~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l   82 (611)
                      +++|+++|+++.   ++  +  .++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||+++|++++|+
T Consensus        50 ~~~~~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l  122 (560)
T PLN02574         50 HNHNGDTALIDS---ST--G--FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTM  122 (560)
T ss_pred             cccCCCCEEEEC---CC--C--CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCc
Confidence            468999999875   21  1  379999999999999999999 899999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccC
Q 007257           83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  162 (611)
Q Consensus        83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (611)
                      +|.++.+++.+++..+++++++++.+....+...      ... ++.++......     ........|.++..... ..
T Consensus       123 ~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~  189 (560)
T PLN02574        123 NPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVPENYDFD-----SKRIEFPKFYELIKEDF-DF  189 (560)
T ss_pred             CcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecCcccccc-----cCccCcccHHHHhhcCC-cc
Confidence            9999999999999999999999998765554321      111 22221110000     00011234444443321 11


Q ss_pred             CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHH-HHHhhc
Q 007257          163 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRR  241 (611)
Q Consensus       163 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~-~~~l~~  241 (611)
                      .......++++++++|||||||.||+|.+||+++...+..+..............+++++.+|++|.+|+... +.++..
T Consensus       190 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~  269 (560)
T PLN02574        190 VPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSL  269 (560)
T ss_pred             cccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhc
Confidence            1223346789999999999999999999999999887765432211111122356888999999999998764 456788


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++.+. ++..+++.++++++|+++++|+++..|.+.....                                    
T Consensus       270 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------  313 (560)
T PLN02574        270 GSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV------------------------------------  313 (560)
T ss_pred             CCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc------------------------------------
Confidence            999988876 9999999999999999999999999886532110                                    


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCC-CccccCccCCCccCeeE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVGTAGPVSVYSEL  398 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~-~~~~~~~~G~~~~~~~v  398 (611)
                              ....++++|.+++||++++++..+.+.+.+ ++++++.||+||++.+.+..... .....+++|.+.+++++
T Consensus       314 --------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v  385 (560)
T PLN02574        314 --------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQA  385 (560)
T ss_pred             --------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEE
Confidence                    001124899999999999999999998888 78999999999998765533222 22345789999999999


Q ss_pred             EEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257          399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY  477 (611)
Q Consensus       399 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~  477 (611)
                      +|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++++||++++.||.+|+|++ +|++
T Consensus       386 ~i~d-~~~g-~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~  462 (560)
T PLN02574        386 KVVD-WSTG-CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQ  462 (560)
T ss_pred             EEEe-CCCC-cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEE-CCEE
Confidence            9998 4433 567788999999999999999999999999888 6899999999999999999999999999997 8999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      |++.+||++|.+||+|.|++|++.++.   +.++++|+++++..        .        +        .++|.++++ 
T Consensus       463 v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~--------~--------~--------~~~l~~~~~-  517 (560)
T PLN02574        463 IAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGST--------L--------S--------QEAVINYVA-  517 (560)
T ss_pred             ECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCC--------C--------C--------HHHHHHHHH-
Confidence            999999999999999999999997754   36888888765320        0        1        123444443 


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +.|+.|+.|+.+.++++.      |+|++||++|+.|++.+.+
T Consensus       518 ~~l~~~~~p~~v~~v~~i------P~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        518 KQVAPYKKVRKVVFVQSI------PKSPAGKILRRELKRSLTN  554 (560)
T ss_pred             HhccCcccCcEEEEeecc------CCCCcchhhHHHHHHHHhh
Confidence            679999999999988765      9999999999999988755

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.4e-64  Score=543.09  Aligned_cols=481  Identities=20%  Similarity=0.192  Sum_probs=386.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||.||.++++++|.+|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus        52 ~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp  122 (537)
T PRK13382         52 AAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILL  122 (537)
T ss_pred             HHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEe
Confidence            57889999999975   3      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.++++++|++......+..... ..+....++..++..            ....++.+...... 
T Consensus       123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-  188 (537)
T PRK13382        123 LNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDED------------HDLTVEVLIAAHAG-  188 (537)
T ss_pred             cCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCc------------ccccHHHHhhccCc-
Confidence            9999999999999999999999998776544322211 112222333332211            01233333322111 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                        ......+++.++++|||||||.||+|.++|.++..........+     .+..++++++..|++|.+++...+.++..
T Consensus       189 --~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  261 (537)
T PRK13382        189 --QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGFSQLVLAASL  261 (537)
T ss_pred             --CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHHHHHHHHHhc
Confidence              11123467899999999999999999999988887766655544     56788999999999999998777888889


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++... ++..+++.++++++|++.++|+++..+.+.....                                   .
T Consensus       262 g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-----------------------------------~  306 (537)
T PRK13382        262 ACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV-----------------------------------R  306 (537)
T ss_pred             CcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh-----------------------------------c
Confidence            999888766 8999999999999999999999999886521110                                   0


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  400 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  400 (611)
                      +.        ..++++|.+++||+++++++.+.|.+.++.++++.||+||++.++..+.......++++|.|++++++++
T Consensus       307 ~~--------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i  378 (537)
T PRK13382        307 NR--------YSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRI  378 (537)
T ss_pred             cc--------CCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEE
Confidence            00        0113899999999999999999999999999999999999998766554332334578999999999999


Q ss_pred             eecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCc
Q 007257          401 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL  480 (611)
Q Consensus       401 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~  480 (611)
                      +| +++  .+++.|+.|||+++|++++.||+  ++.+. .+.+|||+|||++++++||++++.||.||+|+. +|++|+|
T Consensus       379 ~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v~~  451 (537)
T PRK13382        379 LD-QDF--REVPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENVYP  451 (537)
T ss_pred             EC-CCC--CCCCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeEE-CCEEECH
Confidence            98 554  45667889999999999999998  33333 456899999999999999999999999999996 9999999


Q ss_pred             HHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCC
Q 007257          481 EYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKL  557 (611)
Q Consensus       481 ~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  557 (611)
                      .+||+.|.+||+|.+++|++.++.   +.++++|++.++..        .        .        .+.++++++ ..|
T Consensus       452 ~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~--------~--------~--------~~~l~~~l~-~~l  506 (537)
T PRK13382        452 IEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS--------A--------T--------PETLKQHVR-DNL  506 (537)
T ss_pred             HHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC--------C--------C--------HHHHHHHHH-Hhc
Confidence            999999999999999999998755   36889998875420        0        1        123444554 679


Q ss_pred             CCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          558 RGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       558 ~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      +.|++|..++++++.      |+|++||++|++|++
T Consensus       507 ~~~~~P~~i~~v~~l------P~t~~gK~~r~~L~~  536 (537)
T PRK13382        507 ANYKVPRDIVVLDEL------PRGATGKILRRELQA  536 (537)
T ss_pred             cCCCCCcEEEEeccC------CCCCCCCCcHHhhCC
Confidence            999999999998665      999999999999864

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.2e-63  Score=533.39  Aligned_cols=467  Identities=26%  Similarity=0.328  Sum_probs=389.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|.++||++|+++.   +      +.+||.||+++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        11 ~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   81 (483)
T PRK03640         11 RAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL   81 (483)
T ss_pred             HHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence            57889999999876   3      79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..++++++++++++++..........                              ...++++.......
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~  131 (483)
T PRK03640         82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKFAELMNGPKEE  131 (483)
T ss_pred             cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccHHHHhhccccc
Confidence            999999999999999999999999876543321100                              01133332221111


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|.++...+......+     ++..+|++++.+|++|.+++...+.++..
T Consensus       132 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~l~~  206 (483)
T PRK03640        132 AEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISGLSILMRSVIY  206 (483)
T ss_pred             CCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHHHHHHHHHHhc
Confidence            1222334678999999999999999999999999887766655544     78899999999999999998888888999


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++.+. ++..+++.++++++|++.++|+++..+.+.....                                    
T Consensus       207 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~------------------------------------  250 (483)
T PRK03640        207 GMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG------------------------------------  250 (483)
T ss_pred             CCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc------------------------------------
Confidence            999999887 9999999999999999999999999886422110                                    


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC-CccccCccCCCccCeeEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTAGPVSVYSELR  399 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~-~~~~~~~~G~~~~~~~v~  399 (611)
                                ...+++|.+++||++++++..+.+.+. ++++++.||+||++......... ....++++|+|+++++++
T Consensus       251 ----------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~  319 (483)
T PRK03640        251 ----------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELK  319 (483)
T ss_pred             ----------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEE
Confidence                      011489999999999999999988875 99999999999998654443332 344558999999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecC
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  479 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~  479 (611)
                      +.+ ++   .+++.++.|||+++|++++.||+++++.+...|.+|||+|||++++++||.+++.||.+|++++ +|.+|+
T Consensus       320 i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~~v~  394 (483)
T PRK03640        320 IEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGENIY  394 (483)
T ss_pred             Eec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCeEEe-CCEEEC
Confidence            987 32   4667788999999999999999999999999999999999999999999999999999999996 999999


Q ss_pred             cHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCC
Q 007257          480 LEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  556 (611)
Q Consensus       480 ~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  556 (611)
                      +.+||+.+.++|+|.++++++.+++   ..+++++++....                  +.        +.++++++ +.
T Consensus       395 ~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~--------~~l~~~~~-~~  447 (483)
T PRK03640        395 PAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV------------------TE--------EELRHFCE-EK  447 (483)
T ss_pred             HHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC------------------CH--------HHHHHHHH-Hh
Confidence            9999999999999999999987654   3577777755422                  11        23344443 67


Q ss_pred             CCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       557 l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      |+.+++|..|+++++.      |+|++||++|++|++++++
T Consensus       448 l~~~~~p~~i~~~~~i------P~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        448 LAKYKVPKRFYFVEEL------PRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             ccCCCCCcEEEEeCCC------CCCCccceeHHHHHHHHhh
Confidence            9999999999998765      9999999999999999864

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-63  Score=541.92  Aligned_cols=502  Identities=21%  Similarity=0.263  Sum_probs=389.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      .|+++|+++|+++.    +     +.+||+||.+++.++|++|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus        33 ~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v  103 (562)
T PRK05677         33 SCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV  103 (562)
T ss_pred             HHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence            46779999999875    3     689999999999999999997 5999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCc--HHHHHHhh-------------hCC
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKEMAV-------------QTG  145 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~-------------~~~  145 (611)
                      |++|.++.+++.+++++++++++|+++.....+..... . ...+.++..+...  ........             ...
T Consensus       104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK05677        104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLP-K-TGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL  181 (562)
T ss_pred             ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhh-c-cCcceeEEecccccccchhhhhcccchhhccccccccCC
Confidence            99999999999999999999999998765443322111 1 1222333221100  00000000             000


Q ss_pred             CceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCC-CCcEEEEec
Q 007257          146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSFL  224 (611)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~  224 (611)
                      .....+.+.+..............++++++++|||||||.||+|+++|.++..........+   ...+. ..+++++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~  258 (562)
T PRK05677        182 PQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM---GSNLNEGCEILIAPL  258 (562)
T ss_pred             cccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHh---ccCCCCCccEEEEcC
Confidence            11233444443332222223345679999999999999999999999999987665443322   11223 346889999


Q ss_pred             chhhHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007257          225 PLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  301 (611)
Q Consensus       225 p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  301 (611)
                      |++|.+++.. ++..+..|++.++.+.  ++..+++.++++++|+++++|+++..+......                  
T Consensus       259 pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------  320 (562)
T PRK05677        259 PLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAF------------------  320 (562)
T ss_pred             cHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCccc------------------
Confidence            9999999875 4456777887776653  889999999999999999999999877642100                  


Q ss_pred             HHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC
Q 007257          302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  381 (611)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~  381 (611)
                                         ..        ..++++|.+++||+++++++.+.|.+.+|+++++.||+||++.+.......
T Consensus       321 -------------------~~--------~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  373 (562)
T PRK05677        321 -------------------RK--------LDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQ  373 (562)
T ss_pred             -------------------cc--------CChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCcc
Confidence                               00        011389999999999999999999998899999999999998877655443


Q ss_pred             CccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeE
Q 007257          382 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV  460 (611)
Q Consensus       382 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l  460 (611)
                      . ..++++|.|++++++++++ +++  .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|.+
T Consensus       374 ~-~~~~~vG~~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l  449 (562)
T PRK05677        374 A-IQVGTIGIPVPSTLCKVID-DDG--NELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYM  449 (562)
T ss_pred             C-CCCCccCccCCCCEEEEEC-CCC--CCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcE
Confidence            2 2347899999999999998 554  456778899999999999999999999999998 5899999999999999999


Q ss_pred             EEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhcc
Q 007257          461 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  537 (611)
Q Consensus       461 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  537 (611)
                      ++.||.+|+|++ +|.+|+|.+||+.|++||+|.+++|++.++.   +.+++++++.++..        .        +.
T Consensus       450 ~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~--------~--------~~  512 (562)
T PRK05677        450 RIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGET--------L--------TK  512 (562)
T ss_pred             EEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCC--------C--------CH
Confidence            999999999997 8999999999999999999999999997754   37788887654310        0        11


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          538 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       538 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                              +.+.++++ ..|+.|++|..+++++..      |+|++||++|++|++++..+
T Consensus       513 --------~~l~~~~~-~~l~~~~~P~~i~~v~~i------P~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        513 --------EQVMEHMR-ANLTGYKVPKAVEFRDEL------PTTNVGKILRRELRDEELKK  558 (562)
T ss_pred             --------HHHHHHHH-HhhhhccCCcEEEEeccC------CCCCcccccHHHHHHHHHHh
Confidence                    23344443 678999999999999765      99999999999999876543

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-63  Score=536.14  Aligned_cols=478  Identities=22%  Similarity=0.268  Sum_probs=390.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      .|+++||++|+++.    +     +.+||.||.++++++|++|.+ .|+++|++|+++++|++++++++|||+++|++++
T Consensus        11 ~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~   81 (496)
T PRK06839         11 RAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV   81 (496)
T ss_pred             HHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence            57889999999975    3     799999999999999999986 6999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      |+++.++.+++..+++.++++++++++........... . .....++.+.+                  +.++...   
T Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------------------~~~~~~~---  138 (496)
T PRK06839         82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISITS------------------LKEIEDR---  138 (496)
T ss_pred             ecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEecc------------------hHhhhcc---
Confidence            99999999999999999999999998776544322111 1 11122222221                  1111111   


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF  239 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l  239 (611)
                      ......+..++++++++|||||||.||+|.++|.++..........+     .+..++++++.+|++|.+|+.. .+.++
T Consensus       139 ~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~l  213 (496)
T PRK06839        139 KIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGGIGLFAFPTL  213 (496)
T ss_pred             CCCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhhHHHHHHHHH
Confidence            11122345678999999999999999999999999876655444433     6778999999999999999876 45578


Q ss_pred             hcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          240 RRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       240 ~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      ..|+++++.+. ++..+++.++++++|++.++|.+++.+.......                                  
T Consensus       214 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------  259 (496)
T PRK06839        214 FAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE----------------------------------  259 (496)
T ss_pred             hcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc----------------------------------
Confidence            89999888766 9999999999999999999999999886532110                                  


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC-CccccCccCCCccCee
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTAGPVSVYSE  397 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~-~~~~~~~~G~~~~~~~  397 (611)
                                 ...++++|.+++||+++++++.+.+.+. |+++.+.||+||++...+..... .....+++|.|+++++
T Consensus       260 -----------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~  327 (496)
T PRK06839        260 -----------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCD  327 (496)
T ss_pred             -----------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCce
Confidence                       0112489999999999999999999886 99999999999999765544332 2334578999999999


Q ss_pred             EEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257          398 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY  477 (611)
Q Consensus       398 v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~  477 (611)
                      +++++ +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+++++++|.+++.||.+|+|+. +|.+
T Consensus       328 ~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G~~  403 (496)
T PRK06839        328 YELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIIS-GGEN  403 (496)
T ss_pred             EEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccceEEE-CCEE
Confidence            99998 55553  67788999999999999999999999998889999999999999999999999999999996 9999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      |+|.+||+.|.++|+|.+++|++.++..   .++++|+++++..        .        ..        ++|+++++ 
T Consensus       404 v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------~~--------~~l~~~~~-  458 (496)
T PRK06839        404 IYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSV--------L--------IE--------KDVIEHCR-  458 (496)
T ss_pred             ECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC--------C--------CH--------HHHHHHHH-
Confidence            9999999999999999999999977553   7889999876420        0        11        23444443 


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      ..|+.+++|..++++++.      |+|++||++|++|+++.++
T Consensus       459 ~~l~~~~~P~~~~~v~~~------P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        459 LFLAKYKIPKEIVFLKEL------PKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             hhCcCCCCCcEEEEeccC------CCCccccccHHHHHHHhhc
Confidence            679999999999998765      9999999999999987653

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=3.8e-63  Score=537.84  Aligned_cols=493  Identities=26%  Similarity=0.319  Sum_probs=394.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++||++|+++.   ++  +  +++||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        32 ~~~~~~~~~a~~~~---~~--~--~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~  104 (537)
T PLN02246         32 RLSEFSDRPCLIDG---AT--G--RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTT  104 (537)
T ss_pred             HHHhCCCCeEEEec---CC--C--ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEec
Confidence            46789999999865   21  1  68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++..+++.++++++++++.....+.....  ... ..++.+++..           .....+.++.... ..
T Consensus       105 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~-~~~i~~~~~~-----------~~~~~~~~~~~~~-~~  169 (537)
T PLN02246        105 ANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAE--DDG-VTVVTIDDPP-----------EGCLHFSELTQAD-EN  169 (537)
T ss_pred             CCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhh--cCC-ceEEEeCCCC-----------CCceeHHHHhcCC-CC
Confidence            9999999999999999999999998876654422211  011 2344443321           1123344443221 11


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      ........++++++++|||||||.||+|.++|+++...+........ ...++..+|++++.+|++|.+++.. ++.++.
T Consensus       170 ~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~  248 (537)
T PLN02246        170 ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCVLPMFHIYSLNSVLLCGLR  248 (537)
T ss_pred             CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-cccCCCCCcEEEEeechHHHHHHHHHHHHHHh
Confidence            12223456889999999999999999999999999877665432110 0125788999999999999999866 556789


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++++++|++.++|.++..|.+.....                                   
T Consensus       249 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------------  293 (537)
T PLN02246        249 VGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE-----------------------------------  293 (537)
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc-----------------------------------
Confidence            9999999987 8999999999999999999999988875421100                                   


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCC----CccccCccCCCcc
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMCMVGTAGPVSV  394 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~----~~~~~~~~G~~~~  394 (611)
                                ...++++|.+++||+++++++.+.+.+.+ +..+++.||+||++.+++.+...    ....++++|+|++
T Consensus       294 ----------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~  363 (537)
T PLN02246        294 ----------KYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVR  363 (537)
T ss_pred             ----------ccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccC
Confidence                      01124899999999999999999999988 68899999999998765543211    1223478999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcC
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  473 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~  473 (611)
                      ++++++++ +++ ..+++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|++++.||.+|+|++ 
T Consensus       364 ~~~~~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~-  440 (537)
T PLN02246        364 NAELKIVD-PET-GASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKY-  440 (537)
T ss_pred             CcEEEEec-CCC-CCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEE-
Confidence            99999998 433 3566788899999999999999999999999888 6899999999999999999999999999997 


Q ss_pred             CceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 007257          474 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  550 (611)
Q Consensus       474 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  550 (611)
                      +|++|+|.+||+.|.+||+|.+++|++.++.   +.+++++++.++..        .        +        .++|.+
T Consensus       441 ~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~--------~~~l~~  496 (537)
T PLN02246        441 KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE--------I--------T--------EDEIKQ  496 (537)
T ss_pred             CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC--------C--------C--------HHHHHH
Confidence            8999999999999999999999999997655   36788888765320        0        1        123444


Q ss_pred             HHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          551 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       551 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                      +++ ..|+.|+.|+.+.++++.      |+|++||++|++|+++++
T Consensus       497 ~l~-~~l~~~~~p~~i~~~~~~------P~t~~GKi~r~~L~~~~~  535 (537)
T PLN02246        497 FVA-KQVVFYKRIHKVFFVDSI------PKAPSGKILRKDLRAKLA  535 (537)
T ss_pred             HHH-hhCcCccccceEEEeccC------CCCCcchhhHHHHHHHHh
Confidence            443 679999999999998665      999999999999998875

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-63  Score=532.63  Aligned_cols=467  Identities=19%  Similarity=0.207  Sum_probs=384.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||.||.+++.++|.+|.+.|. +|++|+++++|++++++++|||+++|++++|
T Consensus        10 ~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   79 (487)
T PRK07638         10 HASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP   79 (487)
T ss_pred             HHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            57889999999876   3      599999999999999999999985 8999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.+++++++++......+...       ...++..+.                  +.+..... ..
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~------------------~~~~~~~~-~~  133 (487)
T PRK07638         80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-------EGRVIEIDE------------------WKRMIEKY-LP  133 (487)
T ss_pred             cCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-------cceEEEehh------------------hhhhhhhc-cc
Confidence            99999999999999999999999987654333110       011222211                  11111111 11


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      .........+++++++|||||||.||+|+++|.++...+......+     ++..+|+++...|++|..++...+.++..
T Consensus       134 ~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l~~~~~~l~~  208 (487)
T PRK07638        134 TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFLYGAISTLYV  208 (487)
T ss_pred             cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHHHHHHHHHcc
Confidence            1111122356789999999999999999999999988877766555     67889999999999998887777788999


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++.+. ++..+++.++++++|+++++|+++..+.+...                                      
T Consensus       209 g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------------------  250 (487)
T PRK07638        209 GQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR--------------------------------------  250 (487)
T ss_pred             CcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC--------------------------------------
Confidence            999998876 89999999999999999999999988865200                                      


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR  399 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~  399 (611)
                                 ...+.+.++++|++++++..+++.+.+ +..+++.||+||++.++...........+++|.|+++++++
T Consensus       251 -----------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  319 (487)
T PRK07638        251 -----------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVR  319 (487)
T ss_pred             -----------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEE
Confidence                       012556678899999999999999988 78899999999999877665543344557899999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecC
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  479 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~  479 (611)
                      |++ +++  .+++.|+.|||+++|+.++.||+++++.+.+.+.+|||+|||+|++|++|++++.||.+|+|++ +|.+|+
T Consensus       320 i~d-~~g--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~v~  395 (487)
T PRK07638        320 ICN-EAG--EEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILF-GGINIF  395 (487)
T ss_pred             EEC-CCC--CCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEe-CCEEEC
Confidence            998 554  4567788999999999999999999998887778999999999999999999999999999997 999999


Q ss_pred             cHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCC
Q 007257          480 LEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  556 (611)
Q Consensus       480 ~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  556 (611)
                      |.+||++|.++|+|.+|+|++.++.   +.++++++...                    ..        ++++++++ +.
T Consensus       396 ~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~--------------------~~--------~~l~~~~~-~~  446 (487)
T PRK07638        396 PEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSA--------------------TK--------QQLKSFCL-QR  446 (487)
T ss_pred             HHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCC--------------------CH--------HHHHHHHH-HH
Confidence            9999999999999999999998765   46777776421                    11        23334443 57


Q ss_pred             CCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       557 l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      ++.|++|+.++++++.      |+|++||++|++|++++++
T Consensus       447 l~~~~~p~~i~~v~~i------P~t~~GKv~r~~L~~~~~~  481 (487)
T PRK07638        447 LSSFKIPKEWHFVDEI------PYTNSGKIARMEAKSWIEN  481 (487)
T ss_pred             hhcccCCcEEEEeccc------CCCCcccccHHHHHHHHhc
Confidence            8899999999998765      9999999999999988755

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-63  Score=540.14  Aligned_cols=500  Identities=25%  Similarity=0.292  Sum_probs=400.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +|+++||++|+++.   +      +++||.||.+++.++|.+|.+. |+++|++|+++++|++++++++|||+++|++++
T Consensus        19 ~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v   89 (546)
T PRK08314         19 SARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVV   89 (546)
T ss_pred             HHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEe
Confidence            56789999999986   3      6899999999999999999999 999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHH--H------------HhhhCCC
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK--E------------MAVQTGI  146 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~------------~~~~~~~  146 (611)
                      |++|.++.+++.++++.++++++++++.....+.......  ..+.++..........  .            .......
T Consensus        90 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (546)
T PRK08314         90 PVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPG  167 (546)
T ss_pred             ecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccccccccccccccc
Confidence            9999999999999999999999999987665543322111  2223332211000000  0            0000011


Q ss_pred             ceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecch
Q 007257          147 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  226 (611)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  226 (611)
                      ....|++......  ........++++++++|||||||.||+|.++|.++...+......+     ++..+|++++.+|+
T Consensus       168 ~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~  240 (546)
T PRK08314        168 GVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NSTPESVVLAVLPL  240 (546)
T ss_pred             ccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCceEEEEcCc
Confidence            2345555543321  2223445788999999999999999999999999998887766655     67889999999999


Q ss_pred             hhHHHHHH-HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007257          227 AHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  304 (611)
Q Consensus       227 ~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (611)
                      +|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.....                      
T Consensus       241 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~----------------------  298 (546)
T PRK08314        241 FHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG----------------------  298 (546)
T ss_pred             hHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC----------------------
Confidence            99999865 5567999999999887 89999999999999999999999887754100                      


Q ss_pred             HHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCcc
Q 007257          305 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  384 (611)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~  384 (611)
                                     ....        .+++++.+++||+++++++.+++.+.++.++++.||+||++........... 
T Consensus       299 ---------------~~~~--------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~-  354 (546)
T PRK08314        299 ---------------LAER--------DLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRP-  354 (546)
T ss_pred             ---------------cccc--------CchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCC-
Confidence                           0111        1137999999999999999999999889999999999999987665544322 


Q ss_pred             ccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc--C--CccccCceEEEccCCeE
Q 007257          385 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIGQILPNGVV  460 (611)
Q Consensus       385 ~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~--g~~~TGD~~~~~~dG~l  460 (611)
                      ..+++|.|+++++++++| ++. ..+++.++.|||+|+|++++.||+++++.+.+.|.  +  +||+|||+|+++++|.+
T Consensus       355 ~~~~~G~~~~g~~~~i~d-~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l  432 (546)
T PRK08314        355 KLQCLGIPTFGVDARVID-PET-LEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYF  432 (546)
T ss_pred             CCCccCcccCCeEEEEEe-CCC-CcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcE
Confidence            347899999999999998 433 25566778999999999999999999999988873  3  59999999999999999


Q ss_pred             EEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhcc
Q 007257          461 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  537 (611)
Q Consensus       461 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  537 (611)
                      ++.||.||+|++ +|.+|+|.+||++|.++|+|.+++|++.++.   +.++++++++++...                . 
T Consensus       433 ~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~----------------~-  494 (546)
T PRK08314        433 FITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARG----------------K-  494 (546)
T ss_pred             EEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCC----------------C-
Confidence            999999999997 8999999999999999999999999997755   478999998764210                0 


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          538 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       538 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                        +   ..+.++++++ +.|+.+++|+.+.++++.      |+|++||++|++|++..+.
T Consensus       495 --~---~~~~l~~~~~-~~l~~~~~P~~~~~v~~i------P~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        495 --T---TEEEIIAWAR-EHMAAYKYPRIVEFVDSL------PKSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             --C---CHHHHHHHHH-HhcccCCCCcEEEEecCC------CCCCccceeHHHHHHHHhh
Confidence              0   0134555554 789999999999999765      9999999999999876543

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.1e-63  Score=542.87  Aligned_cols=506  Identities=25%  Similarity=0.328  Sum_probs=401.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++||++|+++.    +     +.+||.||+++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        41 ~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~  111 (573)
T PRK05605         41 AVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVE  111 (573)
T ss_pred             HHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEee
Confidence            46789999999875    3     58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHH--HHH---------------hhhC
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEM---------------AVQT  144 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~---------------~~~~  144 (611)
                      ++|.++.+++.+++.+++++++|+++............  .....++..+......  ...               ....
T Consensus       112 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (573)
T PRK05605        112 HNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGP  189 (573)
T ss_pred             cCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccccccccccccC
Confidence            99999999999999999999999988765443221111  1122233322110000  000               0001


Q ss_pred             CCceeeHHHHHhccccc---CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEE
Q 007257          145 GIKPYSWDEFLHLGKVN---EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  221 (611)
Q Consensus       145 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  221 (611)
                      ......|.++.......   ........++++++++|||||||.||+|.+||.++...+......+..   ....+++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~---~~~~~~~~~  266 (573)
T PRK05605        190 APGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG---LGDGPERVL  266 (573)
T ss_pred             CCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc---cCCCCcEEE
Confidence            11334566665432111   012233567899999999999999999999999998776544332210   123478999


Q ss_pred             EecchhhHHHHHH-HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007257          222 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  299 (611)
Q Consensus       222 ~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  299 (611)
                      +..|++|.+|+.. ...++..|+++++.+. ++..+++.++++++|++.++|.+++.+.+......              
T Consensus       267 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------  332 (573)
T PRK05605        267 AALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG--------------  332 (573)
T ss_pred             EecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC--------------
Confidence            9999999999876 4556888999988876 99999999999999999999999998875322110              


Q ss_pred             HHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeecc
Q 007257          300 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  379 (611)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~  379 (611)
                                                     ..++++|.+++||+++++++.+.+.+.++.++++.||+||+++++....
T Consensus       333 -------------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~  381 (573)
T PRK05605        333 -------------------------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNP  381 (573)
T ss_pred             -------------------------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCC
Confidence                                           0113899999999999999999999888999999999999998777665


Q ss_pred             CCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCe
Q 007257          380 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  459 (611)
Q Consensus       380 ~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~  459 (611)
                      ......++++|.++++..++++| +++...+++.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+|+++++|+
T Consensus       382 ~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~  460 (573)
T PRK05605        382 MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGF  460 (573)
T ss_pred             cccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCc
Confidence            44444457899999999999998 55534667788899999999999999999999999999889999999999999999


Q ss_pred             EEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhc
Q 007257          460 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  536 (611)
Q Consensus       460 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~  536 (611)
                      +++.||.||++++ +|++|+|.+||++|..|+.|.+++|++.++.   +.+++++++.++..        .        +
T Consensus       461 l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~--------~--------~  523 (573)
T PRK05605        461 IRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA--------L--------D  523 (573)
T ss_pred             EEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCC--------C--------C
Confidence            9999999999996 9999999999999999999999999987644   57888888876420        0        1


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          537 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       537 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                              .+.|+++++ +.|+.+++|..+++++..      |+|.+||++|++|++++.+++
T Consensus       524 --------~~~l~~~~~-~~l~~~~~p~~i~~~~~i------P~t~~GKi~r~~L~~~~~~~~  571 (573)
T PRK05605        524 --------PEGLRAYCR-EHLTRYKVPRRFYHVDEL------PRDQLGKVRRREVREELLEKL  571 (573)
T ss_pred             --------HHHHHHHHH-HhCccccCCcEEEEeccC------CCCCcccccHHHHHHHHHHHh
Confidence                    134444553 678999999999988654      999999999999999987765

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3e-63  Score=541.71  Aligned_cols=515  Identities=21%  Similarity=0.252  Sum_probs=383.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+++.   +      .++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++|++++|
T Consensus        23 ~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vp   93 (579)
T PLN03102         23 ASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNP   93 (579)
T ss_pred             HHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEee
Confidence            46789999999876   3      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhcccccc----ccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS----AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  157 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (611)
                      +++.++.+++.++|+.++++++|++++....+.......    ......++.++......     .......++.++...
T Consensus        94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  168 (579)
T PLN03102         94 INTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEELDYECLIQR  168 (579)
T ss_pred             ccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcccccCHHHHHhc
Confidence            999999999999999999999999877654433221110    00112234443221100     000112345555443


Q ss_pred             ccccCCc----CCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHH
Q 007257          158 GKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  233 (611)
Q Consensus       158 ~~~~~~~----~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~  233 (611)
                      .......    .....++++++++|||||||.||+|+++|.++...........     .+...+++++.+|++|..++.
T Consensus       169 ~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~g~~  243 (579)
T PLN03102        169 GEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWTLPMFHCNGWT  243 (579)
T ss_pred             cCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEecCChhhhcchh
Confidence            3221111    1234578999999999999999999999999754433322222     456678899999999999887


Q ss_pred             HHHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 007257          234 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  312 (611)
Q Consensus       234 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (611)
                      ..+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+......                           
T Consensus       244 ~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------  296 (579)
T PLN03102        244 FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL---------------------------  296 (579)
T ss_pred             HHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc---------------------------
Confidence            77777888888888765 88899999999999999999999998865311100                           


Q ss_pred             CCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC----------
Q 007257          313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----------  382 (611)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~----------  382 (611)
                                        ...++++.+++||+++++.+.+++.+ +|.++++.||+||+++....+....          
T Consensus       297 ------------------~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~  357 (579)
T PLN03102        297 ------------------SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQ  357 (579)
T ss_pred             ------------------CCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCcccc
Confidence                              00136788999999999999999876 5999999999999987544321110          


Q ss_pred             ---ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCe
Q 007257          383 ---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  459 (611)
Q Consensus       383 ---~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~  459 (611)
                         ....+..+.+.++  +++.+.+.+...+.+.++.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       358 ~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~dG~  435 (579)
T PLN03102        358 MELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGH  435 (579)
T ss_pred             cccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecCceEEEcCCCe
Confidence               0011223333343  44555222222333334679999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhc
Q 007257          460 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  536 (611)
Q Consensus       460 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~  536 (611)
                      +++.||.+|+|+. +|++|+|.+||+.|.+||.|.+++|++.+++   +.++|+|++.++....       ...+.+   
T Consensus       436 l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~-------~~~~~~---  504 (579)
T PLN03102        436 VEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK-------EDRVDK---  504 (579)
T ss_pred             EEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc-------cccccc---
Confidence            9999999999996 9999999999999999999999999998765   4889999887643110       000000   


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHhh
Q 007257          537 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYEK  605 (611)
Q Consensus       537 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~-~~~~~y~~  605 (611)
                         ... -..++.++++ ..|+.|++|..+.++++.      |+|++||++|++|++++.+ ..++-|+.
T Consensus       505 ---~~~-~~~~l~~~~~-~~L~~~~~P~~i~~~~~~------P~t~~gKi~r~~L~~~~~~~~~~~~~~~  563 (579)
T PLN03102        505 ---LVT-RERDLIEYCR-ENLPHFMCPRKVVFLQEL------PKNGNGKILKPKLRDIAKGLVVEDEDNV  563 (579)
T ss_pred             ---ccc-cHHHHHHHHH-hhcccccCCeEEEEcccC------CCCCcccccHHHHHHHHHHhhhHHHHHH
Confidence               000 0234555554 679999999999998665      9999999999999999866 45555553

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-63  Score=538.54  Aligned_cols=494  Identities=23%  Similarity=0.299  Sum_probs=384.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   ++    .+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++++
T Consensus        25 ~a~~~p~~~ai~~~---~~----~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~   97 (534)
T PRK05852         25 AATRLPEAPALVVT---AD----RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVP   97 (534)
T ss_pred             HHHhCCCCcEEEec---CC----CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEee
Confidence            57789999999875   32    158999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++|+.++++++|++............   ......+.+.......      .......+....  ....
T Consensus        98 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~  166 (534)
T PRK05852         98 LDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPS------GGTLSVHLDAAT--EPTP  166 (534)
T ss_pred             cCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeeccccccc------cccccccccccc--CCCc
Confidence            9999999999999999999999998653321111000   0011111111100000      000000000000  0000


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      ........+++.++++|||||||.||+|.++|.++...+......+     ++..+|++++..|++|.+++.. ++.++.
T Consensus       167 ~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  241 (534)
T PRK05852        167 ATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHGHGLIAALLATLA  241 (534)
T ss_pred             cccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchhHHHHHHHHHHHh
Confidence            0111122356889999999999999999999999998888776665     7888999999999999999876 555688


Q ss_pred             cCceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          241 RGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       241 ~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      .|+++++...   ++..+++.++++++|+++++|.+++.+.+......                                
T Consensus       242 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------  289 (534)
T PRK05852        242 SGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP--------------------------------  289 (534)
T ss_pred             cCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc--------------------------------
Confidence            8888887542   78899999999999999999999998865321100                                


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC-------CccccCccC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-------EMCMVGTAG  390 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~-------~~~~~~~~G  390 (611)
                                 .....+++|.++++|+++++++.+++.+.++.++++.||+||++..++.....       .....+..|
T Consensus       290 -----------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g  358 (534)
T PRK05852        290 -----------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVG  358 (534)
T ss_pred             -----------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCcccccccCC
Confidence                       00012589999999999999999999999999999999999999766644321       111223344


Q ss_pred             CCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeE
Q 007257          391 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  470 (611)
Q Consensus       391 ~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i  470 (611)
                      + .++++++++| +++  .+++.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.+|+|
T Consensus       359 ~-~~g~~~~i~d-~~g--~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~~gR~~d~i  434 (534)
T PRK05852        359 R-STGAQIRIVG-SDG--LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELI  434 (534)
T ss_pred             C-CCCCeEEEEC-CCC--CCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCcEEEEecchhhE
Confidence            4 6899999998 555  45667889999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 007257          471 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  547 (611)
Q Consensus       471 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (611)
                      ++ +|.+|+|.+||++|.++|+|.+|+|++.++.   +.+++++++++...        .        +        .++
T Consensus       435 ~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~--------~--------~--------~~~  489 (534)
T PRK05852        435 NR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP--------P--------T--------AEE  489 (534)
T ss_pred             EE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCC--------C--------C--------HHH
Confidence            96 9999999999999999999999999998764   36888888754310        0        1        123


Q ss_pred             HHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          548 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       548 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      |.++++ .+||.+++|+.+++++++      |+|++||++|++|+++|..
T Consensus       490 i~~~~~-~~l~~~~~P~~i~~v~~i------P~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        490 LVQFCR-ERLAAFEIPASFQEASGL------PHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             HHHHHH-HhcccccCCeEEEEhhhc------CCCCCccccHHHHHHHhcc
Confidence            444443 679999999999999766      9999999999999998854

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=7e-63  Score=535.26  Aligned_cols=486  Identities=22%  Similarity=0.239  Sum_probs=391.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +.+||.||++++.++|..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus        30 ~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vp  100 (542)
T PRK06155         30 QAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVP  100 (542)
T ss_pred             HHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEE
Confidence            57889999999876   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..+++.+++++++++.+....+...... ....+.++.++.....         .....|..........
T Consensus       101 l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  170 (542)
T PRK06155        101 INTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASV---------SVPAGWSTAPLPPLDA  170 (542)
T ss_pred             eccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCcccc---------ccccccchhhhcccCC
Confidence            99999999999999999999999998766554332221 1233445555432210         0001111110000111


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|.++..........+     ++..++++++..|++|..++...+.++..
T Consensus       171 ~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~~~~~~~~~l~~  245 (542)
T PRK06155        171 PAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLFHTNALNAFFQALLA  245 (542)
T ss_pred             CCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHHHHHHHHHHHHHHHc
Confidence            1122344678999999999999999999999999987776655555     78889999999999999998877888999


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++.+. ++..++..++++++|+++++|+++..+.+.....                                    
T Consensus       246 G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------------  289 (542)
T PRK06155        246 GATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE------------------------------------  289 (542)
T ss_pred             CceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc------------------------------------
Confidence            999998876 8999999999999999999999988776421110                                    


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  400 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  400 (611)
                               ....++++.++.+|  +++.+.+.+.+.+++++++.||+||++.++.....  ...++++|.+.++++++|
T Consensus       290 ---------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~~vG~~~~~~~~~i  356 (542)
T PRK06155        290 ---------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRPGSMGRLAPGFEARV  356 (542)
T ss_pred             ---------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCCCCcCccCCCceEEE
Confidence                     00114788777655  57889999999899999999999999987765432  234578999999999999


Q ss_pred             eecCCCCCCCCCCCCCcEEEEecC---CcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257          401 EEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY  477 (611)
Q Consensus       401 ~~~~~~~~~~~~~~~~Gel~v~~~---~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~  477 (611)
                      ++ +++  .+++.++.|||+++|+   +++.||+++++.+.+.|.+|||+|||+|++++||++++.||.+|+|++ +|.+
T Consensus       357 ~d-~~~--~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~G~~  432 (542)
T PRK06155        357 VD-EHD--QELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRR-RGEN  432 (542)
T ss_pred             EC-CCC--CCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEecCCCEEEe-CCEE
Confidence            98 554  4566778999999998   689999999999999999999999999999999999999999999996 9999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      |+|.+||++|.+||+|.+|+|++.+++   ..+.+++++..+..        .        +        ..++.++++ 
T Consensus       433 v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~--------~--------~--------~~~~~~~~~-  487 (542)
T PRK06155        433 ISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTA--------L--------E--------PVALVRHCE-  487 (542)
T ss_pred             ECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCC--------C--------C--------HHHHHHHHH-
Confidence            999999999999999999999987764   46778887765320        0        1        123444443 


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  595 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  595 (611)
                      ..|+.+++|..|+++++.      |+|++||++|++|++++
T Consensus       488 ~~l~~~~~P~~i~~~~~i------P~t~~GKi~r~~l~~~~  522 (542)
T PRK06155        488 PRLAYFAVPRYVEFVAAL------PKTENGKVQKFVLREQG  522 (542)
T ss_pred             hhCcCccCCcEEEEeccC------CCCcccceeHHHHHhhc
Confidence            679999999999998765      99999999999999876

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-63  Score=554.93  Aligned_cols=464  Identities=22%  Similarity=0.204  Sum_probs=376.3

Q ss_pred             CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCC
Q 007257            6 YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT   85 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~   85 (611)
                      +||++|+++.          ..+||.||+++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++|++|.
T Consensus        19 ~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~   88 (705)
T PRK06060         19 WYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE   88 (705)
T ss_pred             CCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCC
Confidence            7999999754          479999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc-cccCCc
Q 007257           86 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG-KVNEME  164 (611)
Q Consensus        86 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  164 (611)
                      ++.+++.++++.++++++|++......+...         .++                     ....+.... ...+..
T Consensus        89 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~~~~~~~~~~~~~~~~  138 (705)
T PRK06060         89 LHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------EAAELMSEAARVAPGG  138 (705)
T ss_pred             CCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------hhhhhhhhccccCCCC
Confidence            9999999999999999999987644332110         000                     000011000 001111


Q ss_pred             CCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcc-cccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhhcC
Q 007257          165 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRG  242 (611)
Q Consensus       165 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G  242 (611)
                      ..+..++++++++|||||||.||+|.++|.++...+..+. ..+     ++...+++++..|++|.+++.. ++.++..|
T Consensus       139 ~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G  213 (705)
T PRK06060        139 YEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYFAYGLGNSVWFPLATG  213 (705)
T ss_pred             CCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchhhcchhHHHHHHHhcC
Confidence            2234678999999999999999999999999987765543 233     6778899999999999888754 56678999


Q ss_pred             ceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          243 ASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       243 ~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      +++++.+.  ++..++..++++++|+++++|+++..+.+....                                     
T Consensus       214 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~-------------------------------------  256 (705)
T PRK06060        214 GSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP-------------------------------------  256 (705)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc-------------------------------------
Confidence            99998864  788889999999999999999999887642110                                     


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR  399 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~  399 (611)
                                ..++++|.+++||+++++++.+.+.+.+ +.++++.||+||++..+....... ...+++|+|+++++++
T Consensus       257 ----------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~iG~p~~~~~v~  325 (705)
T PRK06060        257 ----------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-WRLGTLGRVLPPYEIR  325 (705)
T ss_pred             ----------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-CCcCcccccCCCcEEE
Confidence                      0124899999999999999999999888 589999999999987655443222 2347899999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecC
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  479 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~  479 (611)
                      +++ +++  .+++.|+.|||+|+|++++.||+++++.+..  .+|||+|||+|++++||++++.||.||+||+ +|++|+
T Consensus       326 i~d-~~g--~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~  399 (705)
T PRK06060        326 VVA-PDG--TTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRCRADDTEVI-GGVNVD  399 (705)
T ss_pred             EEC-CCC--CCCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEecccCceEEE-CCEEEC
Confidence            998 554  4567788999999999999999999886532  4799999999999999999999999999997 999999


Q ss_pred             cHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCC
Q 007257          480 LEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  556 (611)
Q Consensus       480 ~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  556 (611)
                      |.+||++|.+||+|.+++|++.++.   +.+++++++..+..                 .+.    ...+.++++++ ++
T Consensus       400 ~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~-----------------~~~----~~~~~i~~~l~-~~  457 (705)
T PRK06060        400 PREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT-----------------IDG----SVMRDLHRGLL-NR  457 (705)
T ss_pred             HHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC-----------------cCh----HHHHHHHHHHH-Hh
Confidence            9999999999999999999987754   37889998765320                 011    11234555554 67


Q ss_pred             CCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       557 l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                      ||.|++|..|+++++.      |+|++||++|++|++.+.
T Consensus       458 L~~~~~P~~i~~v~~i------P~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        458 LSAFKVPHRFAVVDRL------PRTPNGKLVRGALRKQSP  491 (705)
T ss_pred             CCCCcCCcEEEEeecC------CCCcchhhHHHHHHhhcc
Confidence            9999999999999765      999999999999998763

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.2e-62  Score=534.13  Aligned_cols=490  Identities=21%  Similarity=0.232  Sum_probs=390.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .++++||++|+++.   ++..+..+.+||+||.+++.++|.+|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus        31 ~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~  107 (538)
T TIGR03208        31 AVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNP  107 (538)
T ss_pred             HHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEec
Confidence            46779999999875   333344579999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH----HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  157 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (611)
                      ++|.++.+++.++++.++++++++++....    ..........+....++..+....             ..|+.++..
T Consensus       108 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~  174 (538)
T TIGR03208       108 LMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD-------------DSFDRVLMT  174 (538)
T ss_pred             cCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC-------------cCHHHHhhc
Confidence            999999999999999999999999875321    111111112233445555543211             122222211


Q ss_pred             cccc-------CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHH
Q 007257          158 GKVN-------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  230 (611)
Q Consensus       158 ~~~~-------~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~  230 (611)
                      ....       ........++++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~  249 (538)
T TIGR03208       175 PERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVILMASPMAHQT  249 (538)
T ss_pred             cccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEEEeCCchhHH
Confidence            1000       0111234678999999999999999999999999998887766655     678899999999999998


Q ss_pred             HHHH-HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007257          231 DRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  308 (611)
Q Consensus       231 g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (611)
                      ++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+........                       
T Consensus       250 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-----------------------  306 (538)
T TIGR03208       250 GFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG-----------------------  306 (538)
T ss_pred             HHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC-----------------------
Confidence            8765 5667899999988776 89999999999999999999999988765321110                       


Q ss_pred             hcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCc-cccC
Q 007257          309 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVG  387 (611)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~-~~~~  387 (611)
                                            ..++++|.+++||+++++++.+++.+.+|+++++.||+||++++......... ....
T Consensus       307 ----------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  364 (538)
T TIGR03208       307 ----------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKAST  364 (538)
T ss_pred             ----------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhccC
Confidence                                  11248999999999999999999998889999999999999887665543321 2235


Q ss_pred             ccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccC
Q 007257          388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       388 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      ++|.|++++++++++ +++  .+++.|+.|||+++|++++.||+++++.+.. ..+|||+|||+|+++++|.+++.||.+
T Consensus       365 ~~G~~~~g~~v~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g~l~~~gR~~  440 (538)
T TIGR03208       365 TDGRPLPGVEVKVID-ANG--AKLSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEGYIRINGRSK  440 (538)
T ss_pred             cccccCCCCEEEEEC-CCC--CCCcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCCcEEEEeccC
Confidence            789999999999998 554  3556788999999999999999999887642 368999999999999999999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      |+|++ +|++|+|.+||++|.+||+|.+++|++.++.   +.+.+++++..+..        .        +        
T Consensus       441 ~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~--------~--------~--------  495 (538)
T TIGR03208       441 DVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCT--------L--------D--------  495 (538)
T ss_pred             ceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCC--------C--------C--------
Confidence            99996 9999999999999999999999999997655   47888988765320        0        1        


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  592 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  592 (611)
                      .+++.+++.+.+++.+++|+.++++++.      |+|++||++|++|+
T Consensus       496 ~~~l~~~~~~~~l~~~~~P~~i~~v~~i------P~t~~gKv~r~~L~  537 (538)
T TIGR03208       496 FAAMVAFLKAQKVALQYIPERLEVVDAL------PATPAGKIQKFRLR  537 (538)
T ss_pred             HHHHHHHHHhcchhhccCCcEEEEeccC------CCCCccccchHhhc
Confidence            1234444443478999999999998765      99999999999985

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.5e-62  Score=531.29  Aligned_cols=493  Identities=23%  Similarity=0.280  Sum_probs=392.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+++.   + ..++++++||.||+++++++|..|.+.|+++||+|+++++|++++++++|||+++|+++++
T Consensus        16 ~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~   91 (517)
T PRK08008         16 LADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVP   91 (517)
T ss_pred             HHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEE
Confidence            57889999999986   4 4556689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++++++++++++++....+.+.........+.++..+....        ......+++++.......
T Consensus        92 l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  163 (517)
T PRK08008         92 INARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP--------ADDGVSSFTQLKAQQPAT  163 (517)
T ss_pred             cCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc--------ccccccCHHHHhccCCcc
Confidence            999999999999999999999999987665443322222233444544443211        011223444443322211


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      .....+..++++++++|||||||.||+|.++|.++...........     .+..++++++.+|++|..+... ++.++.
T Consensus       164 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~l~  238 (517)
T PRK08008        164 LCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDCQCTAAMAAFS  238 (517)
T ss_pred             ccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHHHHHHHHHHHh
Confidence            1222344678999999999999999999999999986543322222     4678899999999999877665 556788


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++++++|++.++|.+++.+........                                  
T Consensus       239 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------  284 (517)
T PRK08008        239 AGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN----------------------------------  284 (517)
T ss_pred             cCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc----------------------------------
Confidence            9999999877 89999999999999999999999988754211000                                  


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR  399 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~  399 (611)
                                 ....+++.+.++ .+++++..+.|.+.+|.++++.||+||+++.+....+.....+.++|.|+++++++
T Consensus       285 -----------~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~  352 (517)
T PRK08008        285 -----------DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAE  352 (517)
T ss_pred             -----------cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCcEEE
Confidence                       001267777665 47899999999988899999999999998766655544445567899999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEec---CCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCc
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG  475 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~---~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G  475 (611)
                      ++| +++  .+++.|+.|||+++|   ++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.+|+|++ +|
T Consensus       353 i~d-~~~--~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G  428 (517)
T PRK08008        353 IRD-DHN--RPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR-GG  428 (517)
T ss_pred             EEC-CCC--CCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEe-CC
Confidence            998 554  456677899999998   689999999999999998 6899999999999999999999999999996 89


Q ss_pred             eecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257          476 EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  552 (611)
Q Consensus       476 ~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  552 (611)
                      ++|+|.+||++|.+||.|.+++|++.++.   +.+.++|+++.+..        .        +        .+++.+++
T Consensus       429 ~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~--------~--------~--------~~~l~~~~  484 (517)
T PRK08008        429 ENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET--------L--------S--------EEEFFAFC  484 (517)
T ss_pred             EEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC--------C--------C--------HHHHHHHH
Confidence            99999999999999999999999998755   47889998876420        0        1        12344454


Q ss_pred             HhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHH
Q 007257          553 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  592 (611)
Q Consensus       553 ~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  592 (611)
                      + +.++.+++|..+.+++..      |+|++||++|+.|+
T Consensus       485 ~-~~l~~~~~P~~~~~v~~i------P~t~~gK~~r~~l~  517 (517)
T PRK08008        485 E-QNMAKFKVPSYLEIRKDL------PRNCSGKIIKKNLK  517 (517)
T ss_pred             H-hhcccccCCcEEEEeccC------CCCCccceehhhcC
Confidence            4 679999999999998665      99999999999863

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.5e-63  Score=594.57  Aligned_cols=528  Identities=17%  Similarity=0.130  Sum_probs=395.2

Q ss_pred             ccccCCCCCceeeeccccCC---CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCE
Q 007257            2 SVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI   78 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~---~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   78 (611)
                      +|+++||++|+++.   +..   ....+++||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus       245 ~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~  321 (1389)
T TIGR03443       245 NAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGAT  321 (1389)
T ss_pred             HHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcE
Confidence            57889999999875   211   223479999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCChhHHHHHHhhcCccEEEEcchhH---HHHhcccccc---ccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257           79 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRS---AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  152 (611)
Q Consensus        79 ~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  152 (611)
                      ++|++|.++.+++.++++.+++++++++....   ..+.......   ......+. +.+....      ..........
T Consensus       322 ~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~  394 (1389)
T TIGR03443       322 FSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSL------VGGSLEGGET  394 (1389)
T ss_pred             EeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-ecccccc------cccccccccc
Confidence            99999999999999999999999999876421   1110000000   00111111 1110000      0000000000


Q ss_pred             HHHhccc--ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHH
Q 007257          153 EFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  230 (611)
Q Consensus       153 ~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~  230 (611)
                      ++.....  ..........++++++++|||||||.||||+++|+++.+.+......+     ++..+|++++..|++|..
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~d~  469 (1389)
T TIGR03443       395 DVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKFTMLSGIAHDP  469 (1389)
T ss_pred             cccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEecCceecc
Confidence            0000000  001112234678999999999999999999999999999887776666     788899999999999998


Q ss_pred             HHHHHHHHhhcCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007257          231 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  306 (611)
Q Consensus       231 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (611)
                      ++..++.+++.|+++++.+.    ++..+++.++++++|+++++|++++.+.....                        
T Consensus       470 ~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------  525 (1389)
T TIGR03443       470 IQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT------------------------  525 (1389)
T ss_pred             hHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc------------------------
Confidence            88888889999999998764    67899999999999999999999987753110                        


Q ss_pred             HhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC---
Q 007257          307 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---  382 (611)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~---  382 (611)
                                              ..++++|.+++||+++++...+.+.+.+ +++++|.||+||++..++......   
T Consensus       526 ------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~  581 (1389)
T TIGR03443       526 ------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSS  581 (1389)
T ss_pred             ------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEcccccc
Confidence                                    0124899999999999999999888765 789999999999987665432211   


Q ss_pred             -------ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------------
Q 007257          383 -------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------------  442 (611)
Q Consensus       383 -------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------------  442 (611)
                             .....++|.|+++++++|++ +++...+++.|+.|||+|+||+++.||+++|+.|.+.|.             
T Consensus       582 ~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~  660 (1389)
T TIGR03443       582 DSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDL  660 (1389)
T ss_pred             ccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCccccccc
Confidence                   01235789999999999998 666667788899999999999999999999999998872             


Q ss_pred             ----------------CCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC--
Q 007257          443 ----------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--  504 (611)
Q Consensus       443 ----------------~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--  504 (611)
                                      ++||+|||+|++++||.|++.||.||+||+ +|++|+|.+||++|.+||.|.+++|++.++.  
T Consensus       661 ~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~  739 (1389)
T TIGR03443       661 DKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDE  739 (1389)
T ss_pred             ccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCC
Confidence                            479999999999999999999999999997 9999999999999999999999999875543  


Q ss_pred             -CeEEEEEecChHHH--HHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccc
Q 007257          505 -SMLVAVVVPCEEDT--KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT  581 (611)
Q Consensus       505 -~~~~a~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t  581 (611)
                       +.++|++++..+..  ..+.............+...+......+.++++++ .+||.|++|..+++++..      |+|
T Consensus       740 ~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~~~l------P~t  812 (1389)
T TIGR03443       740 EPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPLKKL------PLN  812 (1389)
T ss_pred             CeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEcccC------CCC
Confidence             47999999873210  00000000000000000001112233456677775 789999999999888654      999


Q ss_pred             cccccchHHHHHHHHHHHHH
Q 007257          582 ATLKKKRNKLLIYYQVEIDQ  601 (611)
Q Consensus       582 ~~GKv~R~~l~~~~~~~~~~  601 (611)
                      ++||++|++|.+.+..+++.
T Consensus       813 ~~GKidr~~L~~~~~~~~~~  832 (1389)
T TIGR03443       813 PNGKVDKPALPFPDTAQLAA  832 (1389)
T ss_pred             CCccccHhhcCCCchhhhhh
Confidence            99999999997665555443

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.8e-62  Score=529.77  Aligned_cols=498  Identities=21%  Similarity=0.273  Sum_probs=391.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++|+++++.+.     ..+.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        19 ~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~   93 (539)
T PRK07008         19 AARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHT   93 (539)
T ss_pred             HHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEee
Confidence            46677888787654     1234578999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++..+++.++++++++++.....+.+... .......++...+....     ........+++++...... 
T Consensus        94 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~-  166 (539)
T PRK07008         94 INPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHL-----PAGSTPLLCYETLVGAQDG-  166 (539)
T ss_pred             cccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHh-hCCCceEEEEEccCCcc-----ccCCcccccHHHHhcccCC-
Confidence            9999999999999999999999999876554332211 22344444444432210     0011224456666543321 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhh--hcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF  239 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l  239 (611)
                      ........++++++++|||||||.||+|++||.++.....  .....+     ++..+|++++..|++|.+++...+.++
T Consensus       167 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~~l  241 (539)
T PRK07008        167 DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHVNAWGLPYSAP  241 (539)
T ss_pred             CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHhhhHHHHHHHH
Confidence            1122345678899999999999999999999999864322  222223     677889999999999988877667778


Q ss_pred             hcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          240 RRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       240 ~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      ..|+++++.+.  ++..+++.++++++|++.++|+++..+.+......                                
T Consensus       242 ~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------  289 (539)
T PRK07008        242 LTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG--------------------------------  289 (539)
T ss_pred             hcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC--------------------------------
Confidence            89999998754  89999999999999999999999988865322110                                


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC----------ccccC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----------MCMVG  387 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~----------~~~~~  387 (611)
                                   ..+++++.++++|+++++++.+.+.+.++.++++.||+||++..+..+....          .....
T Consensus       290 -------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (539)
T PRK07008        290 -------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE  356 (539)
T ss_pred             -------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcc
Confidence                         0124899999999999999999999889999999999999997655443111          11236


Q ss_pred             ccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccC
Q 007257          388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       388 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      ++|.|+|++++++++ +++...+.+.++.|||+++|++++.||+++++   ..+.+|||+|||+|++++||++++.||.+
T Consensus       357 ~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg~l~~~GR~~  432 (539)
T PRK07008        357 KQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSK  432 (539)
T ss_pred             cCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCCCcEEEeeccc
Confidence            789999999999998 66654544445679999999999999999883   34568999999999999999999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      |+|+. +|.+|+|.+||+.+.++|.|.+++|++.++.   +.++++|+..++..        .        +        
T Consensus       433 d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~--------  487 (539)
T PRK07008        433 DVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAE--------V--------T--------  487 (539)
T ss_pred             CEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCc--------c--------C--------
Confidence            99996 9999999999999999999999999997764   46777777665320        0        1        


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .+.+.++++ ++|+.|+.|+.+++++..      |+|++||++|++|++++.+
T Consensus       488 ~~~l~~~~~-~~l~~~~~P~~i~~v~~l------P~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        488 REELLAFYE-GKVAKWWIPDDVVFVDAI------PHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             HHHHHHHHH-hhcccccCCeEEEEecCC------CCCCccceeHHHHHHHHHh
Confidence            123444554 679999999999998665      9999999999999998865

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-62  Score=536.56  Aligned_cols=508  Identities=21%  Similarity=0.268  Sum_probs=398.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +|..+||++|+++.   + +  +++.+||.||.+++.++|.+|.+ .|+++||+|+++++|+++++++++||+++|++++
T Consensus        19 ~a~~~~~~~a~~~~---~-~--~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v   92 (576)
T PRK05620         19 GSTVHGDTTVTTWG---G-A--EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFN   92 (576)
T ss_pred             HHHhCCCceEEEEc---C-C--ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEe
Confidence            46789999999874   2 1  34799999999999999999987 6999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      +++|.++.+++.++++.++++++|+++.....+..... ..+....++..+..................+|.++.... .
T Consensus        93 ~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  170 (576)
T PRK05620         93 PLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGR-S  170 (576)
T ss_pred             ecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhccccccccccHHHHhhcC-C
Confidence            99999999999999999999999999876554432222 223444555544321111000111122345677776533 2


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcc--cccccccCCCCCCcEEEEecchhhHHHHHHHHHH
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD--LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF  238 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~  238 (611)
                      .........++++++++|||||||.||+|.++|.++........  ..+     .+..++++++.+|++|.+++...+.+
T Consensus       171 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~g~~~~~~~  245 (576)
T PRK05620        171 TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIYHVLSWGVPLAA  245 (576)
T ss_pred             CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChHHhhhhHHHHHH
Confidence            22223345678999999999999999999999999865443321  122     57789999999999999998877888


Q ss_pred             hhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          239 FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       239 l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      +..|+++++...  ++..+++.++++++|+++++|+++..+........                               
T Consensus       246 l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------  294 (576)
T PRK05620        246 FMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-------------------------------  294 (576)
T ss_pred             HhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-------------------------------
Confidence            999999988754  89999999999999999999999988765321100                               


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-------ccccCcc
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-------MCMVGTA  389 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-------~~~~~~~  389 (611)
                                    ...+++|.+++||+++++.+.+.|.+.+|+++++.||+||++..+....+..       .....++
T Consensus       295 --------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (576)
T PRK05620        295 --------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQ  360 (576)
T ss_pred             --------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccccccccccccc
Confidence                          0013799999999999999999999888999999999999998765543321       0112478


Q ss_pred             CCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhh----------------hhhc-cCCccccCceE
Q 007257          390 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RESI-IDGWFHTGDIG  452 (611)
Q Consensus       390 G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~----------------~~~~-~~g~~~TGD~~  452 (611)
                      |++.+++++++++ + +...+.+.++.|||+++|++++.||+++++.+                ...| .+|||+|||++
T Consensus       361 G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~  438 (576)
T PRK05620        361 GRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVG  438 (576)
T ss_pred             CCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceE
Confidence            8999999999998 4 44343345578999999999999999999877                2233 47899999999


Q ss_pred             EEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCC
Q 007257          453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  529 (611)
Q Consensus       453 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~  529 (611)
                      ++++||.+++.||.+|+|+. +|.+|+|.+||+.|.+||.|.+|+|++.++.   +.+++++++.++..           
T Consensus       439 ~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~-----------  506 (576)
T PRK05620        439 SVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIE-----------  506 (576)
T ss_pred             EEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCC-----------
Confidence            99999999999999999995 9999999999999999999999999998765   36788887765420           


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          530 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                            ...    ...+.|+++++ ++|+.+++|+.|+++++.      |+|.+||++|++|++++++.
T Consensus       507 ------~~~----~~~~~l~~~l~-~~L~~~~~P~~i~~v~~~------P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        507 ------PTR----ETAERLRDQLR-DRLPNWMLPEYWTFVDEI------DKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             ------ccc----ccHHHHHHHHH-hhCccccCCeEEEEeccC------CCCCcccCcHHHHHHHHhcC
Confidence                  000    01234555554 789999999999998765      99999999999999999763

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-62  Score=530.50  Aligned_cols=496  Identities=28%  Similarity=0.363  Sum_probs=410.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++|+++|+.+.   +      +.+||+||++++.++|++|.+.|+++|++|+++++|++++++++|||+++|+++++
T Consensus        15 ~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~   85 (521)
T PRK06187         15 GARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHP   85 (521)
T ss_pred             HHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEe
Confidence            57889999999987   4      46999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..+++.+++++++++.+....+.+.. ...+..+.++..++....      ........+.++..... .
T Consensus        86 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~  157 (521)
T PRK06187         86 INIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL-PQLPTVRTVIVEGDGPAA------PLAPEVGEYEELLAAAS-D  157 (521)
T ss_pred             cccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHh-hccCCccEEEEecCcccc------ccccccccHHHHhhcCC-c
Confidence            999999999999999999999999987665543322 223444556655543310      11123445555544332 2


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|.++..........+     +++.++++++..|++|.+++...+.++..
T Consensus       158 ~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~  232 (521)
T PRK06187        158 TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVHAWGLPYLALMA  232 (521)
T ss_pred             cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHhhHHHHHHHHHh
Confidence            2223455678999999999999999999999999998887766655     78899999999999999998887779999


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++++. ++..+++.++++++|+++++|++++.+.+.....                                    
T Consensus       233 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------------------  276 (521)
T PRK06187        233 GAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------------------  276 (521)
T ss_pred             CCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC------------------------------------
Confidence            999999877 8999999999999999999999999886532210                                    


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCc-----cccCccCCCccC
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----CMVGTAGPVSVY  395 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~-----~~~~~~G~~~~~  395 (611)
                               ...++++|.+++||++++++..+++.+.+++++++.||+||+++++........     ...+++|.|+++
T Consensus       277 ---------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  347 (521)
T PRK06187        277 ---------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPG  347 (521)
T ss_pred             ---------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCccccccCC
Confidence                     011248999999999999999999999889999999999999987776554332     245889999999


Q ss_pred             eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCc
Q 007257          396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG  475 (611)
Q Consensus       396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G  475 (611)
                      .+++|++ +++...+.+.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+++++++|.+++.||.+|++++ +|
T Consensus       348 ~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~-~G  425 (521)
T PRK06187        348 VEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIIS-GG  425 (521)
T ss_pred             eEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEeecccceEEc-CC
Confidence            9999999 666544443488999999999999999999999999999999999999999999999999999999997 99


Q ss_pred             eecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257          476 EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  552 (611)
Q Consensus       476 ~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  552 (611)
                      .+++|.+||+.|.++++|.+++|++.++.   +.+.+++++.++..        .        +.        +.+.+++
T Consensus       426 ~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~~--------~~l~~~l  481 (521)
T PRK06187        426 ENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT--------L--------DA--------KELRAFL  481 (521)
T ss_pred             eEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCC--------C--------CH--------HHHHHHH
Confidence            99999999999999999999999987654   47888888765320        0        11        2233333


Q ss_pred             HhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          553 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       553 ~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                       ++.|+.+.+|..++++++.      |+|++||++|.+|+++|++
T Consensus       482 -~~~l~~~~~p~~i~~v~~~------P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        482 -RGRLAKFKLPKRIAFVDEL------PRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             -HHhccCCCCceEEEEccCC------CCCCCCCeeHHHHHHHHhc
Confidence             3678999999999998765      9999999999999999865

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2e-62  Score=530.99  Aligned_cols=484  Identities=19%  Similarity=0.181  Sum_probs=385.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++|+++|+++.    +     +.+||.||.++++++|..|.+.|+++|++|+++++|++++++++|||+++|+++++
T Consensus        32 ~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~  102 (527)
T TIGR02275        32 QAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVL  102 (527)
T ss_pred             HHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEec
Confidence            46789999999875    3     69999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH----HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  157 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (611)
                      +++..+.+++.++++.++++++++++....    ..........+....++.......            ..........
T Consensus       103 ~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  170 (527)
T TIGR02275       103 ALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------EAELFLWLES  170 (527)
T ss_pred             cccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------cchhhHHhhC
Confidence            999999999999999999999999865321    111111111223333333322110            0001111111


Q ss_pred             ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--H
Q 007257          158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--E  235 (611)
Q Consensus       158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--~  235 (611)
                      . ..........++++++++|||||||.||+|.++|.++...+......+     .+..++++++.+|++|.+++..  .
T Consensus       171 ~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~h~~~~~~~~~  244 (527)
T TIGR02275       171 P-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAAHNYPLSSPGA  244 (527)
T ss_pred             c-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChHhhhhhhHHHH
Confidence            1 111122345678999999999999999999999999988877766555     6788999999999999998764  5


Q ss_pred             HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257          236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  314 (611)
Q Consensus       236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (611)
                      +.++..|+++++.+. ++..+++.++++++|+++++|.+++.+.+......                             
T Consensus       245 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------------  295 (527)
T TIGR02275       245 LGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-----------------------------  295 (527)
T ss_pred             HHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-----------------------------
Confidence            667889999988765 89999999999999999999999988765322110                             


Q ss_pred             CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc-
Q 007257          315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS-  393 (611)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~-  393 (611)
                                      ..++++|.+++||+++++++.+.+.+.+|.++++.||+||++..............+++|.|+ 
T Consensus       296 ----------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  359 (527)
T TIGR02275       296 ----------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMS  359 (527)
T ss_pred             ----------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCCCCC
Confidence                            112489999999999999999999998999999999999966443322211222346789998 


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  472 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~  472 (611)
                      ++.++++++ +++  .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||++++.||.+|+|++
T Consensus       360 ~~~~v~i~d-~~g--~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~  436 (527)
T TIGR02275       360 PDDEVRVVD-DHG--NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINR  436 (527)
T ss_pred             CCceEEEEC-CCC--CCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeec
Confidence            488999988 554  456678899999999999999999999999888 6899999999999999999999999999996


Q ss_pred             CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257          473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  549 (611)
Q Consensus       473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  549 (611)
                       +|++|+|.+||+.|.+||+|.+++|++.++.   +.++++|+++++..                 +        ..+|+
T Consensus       437 -~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~-----------------~--------~~~l~  490 (527)
T TIGR02275       437 -GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL-----------------K--------AAQLR  490 (527)
T ss_pred             -CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCC-----------------C--------HHHHH
Confidence             9999999999999999999999999998765   47888888765310                 1        12455


Q ss_pred             HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHH
Q 007257          550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  592 (611)
Q Consensus       550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  592 (611)
                      +++++..++.|++|..+.++++.      |+|++||++|++|+
T Consensus       491 ~~l~~~~l~~~~~P~~i~~v~~i------P~t~sGKv~r~~L~  527 (527)
T TIGR02275       491 RFLRERGLAEYKLPDRVEFIDSL------PLTAVGKIDKKALR  527 (527)
T ss_pred             HHHHhCCCccccCCCEEEEeccC------CCCCccceeHHhcC
Confidence            55544469999999999999765      99999999999873

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-62  Score=531.01  Aligned_cols=496  Identities=25%  Similarity=0.308  Sum_probs=400.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        20 ~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~   90 (523)
T PRK08316         20 SARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVP   90 (523)
T ss_pred             HHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence            46789999999986   3      69999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..+++.++++++++++.....+........  ...+........      .........+.++..... .
T Consensus        91 l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~  161 (523)
T PRK08316         91 VNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLGG------REAPGGWLDFADWAEAGS-V  161 (523)
T ss_pred             cccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeecccc------cccccchhhHHHHHhcCC-C
Confidence            9999999999999999999999999876655433221111  111111100000      000112334444433321 1


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHH-HHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE-YFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~-~~l~  240 (611)
                      ........++++++++|||||||.||+|.++|.++..........+     ++..++++++.+|++|..++...+ .++.
T Consensus       162 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~~~  236 (523)
T PRK08316        162 AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQLDVFLGPYLY  236 (523)
T ss_pred             ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhhHHHHHHHHHh
Confidence            1123345778999999999999999999999999988877665555     788899999999999999987644 4688


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++++++|++.++|.++..+.+....                                    
T Consensus       237 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------  280 (523)
T PRK08316        237 VGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF------------------------------------  280 (523)
T ss_pred             cCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc------------------------------------
Confidence            9999999865 999999999999999999999999887642110                                    


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC-ccccCccCCCccCee
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSE  397 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~~~~~~  397 (611)
                       .        ...+++++.+++||+.++.+..+.+.+.+ ++++++.||+||++.+.....+.. ....+++|.++++++
T Consensus       281 -~--------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~  351 (523)
T PRK08316        281 -D--------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVE  351 (523)
T ss_pred             -c--------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcE
Confidence             0        01124899999999999999999999987 789999999999998776654432 234578999999999


Q ss_pred             EEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257          398 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY  477 (611)
Q Consensus       398 v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~  477 (611)
                      +++.+ +++  .+++.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||.+++.||.+|+|++ +|.+
T Consensus       352 ~~i~~-~~~--~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~-~G~~  427 (523)
T PRK08316        352 TRVVD-DDG--NDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKT-GGEN  427 (523)
T ss_pred             EEEEc-CCC--CCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccccEEEe-CCeE
Confidence            99998 554  4566688999999999999999999999999999999999999999999999999999999997 9999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      |+|.+||+.|.++|+|.+++|++.++.   +.++++++++++..          .      .        .+.+.++++ 
T Consensus       428 i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~------~--------~~~l~~~~~-  482 (523)
T PRK08316        428 VASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGAT----------V------T--------EDELIAHCR-  482 (523)
T ss_pred             ECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCC----------C------C--------HHHHHHHHH-
Confidence            999999999999999999999997655   36888888875420          0      1        122333443 


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  600 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~  600 (611)
                      ..|+.+++|..++++++.      |+|++||++|++|+++|++.++
T Consensus       483 ~~l~~~~~p~~i~~v~~~------p~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        483 ARLAGFKVPKRVIFVDEL------PRNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             HhcccCCCCcEEEEecCC------CCCCccceeHHHHHHHHHhhcc
Confidence            578999999999999665      9999999999999999987664

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-62  Score=528.68  Aligned_cols=490  Identities=24%  Similarity=0.334  Sum_probs=402.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+++.    +     +++||+||.+.+.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        14 ~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~   84 (513)
T PRK07656         14 AARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVP   84 (513)
T ss_pred             HHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEe
Confidence            46789999999986    3     68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..++++++++++++++.......... ...+....++.........      ......+|.++...... 
T Consensus        85 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-  156 (513)
T PRK07656         85 LNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDDP------HTEKMKTFTDFLAAGDP-  156 (513)
T ss_pred             cCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCccccc------CccccccHHHHHhcCCC-
Confidence            999999999999999999999999987655443221 2233444554444332110      01123456666544322 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      ........++++++++|||||||.||+|.++|.++...+......+     ++..++++++..|++|.+++.. .+.++.
T Consensus       157 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (513)
T PRK07656        157 AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHVFGYKAGVNAPLM  231 (513)
T ss_pred             CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHHHHHHHHHHHHHH
Confidence            2233445778999999999999999999999999988887766665     7888999999999999999876 566789


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++++++|+++++|.++..+.+......                                  
T Consensus       232 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------------  277 (513)
T PRK07656        232 RGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA----------------------------------  277 (513)
T ss_pred             cCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------------------
Confidence            9999988766 89999999999999999999999998875321100                                  


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCC-ceeeccccCCCCCceeeccCCCccc--cCccCCCccCe
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYS  396 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~g~~~~~~~~~~~~~--~~~~G~~~~~~  396 (611)
                                 ..++++|.+++||+++++++.+.+.+.++. ++++.||+||++++...+.......  .+++|.+++++
T Consensus       278 -----------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~  346 (513)
T PRK07656        278 -----------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGV  346 (513)
T ss_pred             -----------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCc
Confidence                       012489999999999999999999998988 8999999999998887776544322  57899999999


Q ss_pred             eEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-CCccccCceEEEccCCeEEEEeccCCeEEcCCc
Q 007257          397 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG  475 (611)
Q Consensus       397 ~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G  475 (611)
                      ++++++ +++  .+++.|+.|||+++|+.++.||++++..+...+. +|||+|||+|+++++|.+++.||.+|++++ +|
T Consensus       347 ~~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~-~G  422 (513)
T PRK07656        347 ENKIVN-ELG--EEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIV-GG  422 (513)
T ss_pred             EEEEEC-CCC--CCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEe-CC
Confidence            999998 554  4566778999999999999999999999988884 899999999999999999999999999997 99


Q ss_pred             eecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257          476 EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  552 (611)
Q Consensus       476 ~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  552 (611)
                      .+++|.+||+.|.++|+|.+++|++.++.   +.+.++++++...        ..        +.        +++.+++
T Consensus       423 ~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~--------~~--------~~l~~~~  478 (513)
T PRK07656        423 FNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA--------EL--------TE--------EELIAYC  478 (513)
T ss_pred             EEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC--------CC--------CH--------HHHHHHH
Confidence            99999999999999999999999987654   4678888876421        00        11        2344444


Q ss_pred             HhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          553 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       553 ~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      + ..|+.+++|..++++++.      |+|++||++|++|++
T Consensus       479 ~-~~l~~~~~p~~i~~v~~i------P~t~~gK~~r~~l~~  512 (513)
T PRK07656        479 R-EHLAKYKVPRSIEFLDEL------PKNATGKVLKRALRE  512 (513)
T ss_pred             H-hhcccccCCCEEEEecCC------CCCCccceeHHHHhc
Confidence            3 679999999999999665      999999999999875

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4e-62  Score=530.26  Aligned_cols=492  Identities=25%  Similarity=0.284  Sum_probs=400.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+.+.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus        26 ~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vp   96 (542)
T PRK07786         26 HALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVP   96 (542)
T ss_pred             HHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEE
Confidence            46789999999876   3      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..++++++++++++++........ .....+....++...+...          ....+++++...... 
T Consensus        97 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-  164 (542)
T PRK07786         97 VNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATA-VRDIVPLLSTVVVAGGSSD----------DSVLGYEDLLAEAGP-  164 (542)
T ss_pred             cCccCCHHHHHHHHHhCCCcEEEEccchHHHHHH-hhhccCccceEEEecCCCc----------ccccCHHHHhhccCC-
Confidence            9999999999999999999999998876554322 1122234445555443211          122345555433221 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCC-CCCcEEEEecchhhHHHHHHHHHHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAHILDRVIEEYFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~~~~~~~l~  240 (611)
                      .........+++++++|||||||.||+|.++|.++...+......+     ++ ..++++++..|++|.+|+...+.++.
T Consensus       165 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~g~~~~~~~l~  239 (542)
T PRK07786        165 AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHIAGIGSMLPGLL  239 (542)
T ss_pred             CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHHHHHHHHHHHHH
Confidence            1222345567899999999999999999999999988776655444     44 56789999999999999877888899


Q ss_pred             cCceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          241 RGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       241 ~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      .|+++++.+.   ++..+++.++++++|+++++|+++..+........                                
T Consensus       240 ~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--------------------------------  287 (542)
T PRK07786        240 LGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP--------------------------------  287 (542)
T ss_pred             ccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc--------------------------------
Confidence            9999998752   89999999999999999999999998865321100                                


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC-ccccCccCCCccC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY  395 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~~~~  395 (611)
                                    ...+++.+++||+++++++.+.+.+.+ +.++++.||+||++.+.+...... ....+++|.|+++
T Consensus       288 --------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~  353 (542)
T PRK07786        288 --------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPT  353 (542)
T ss_pred             --------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCC
Confidence                          002689999999999999999999988 789999999999998766544322 2345789999999


Q ss_pred             eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCc
Q 007257          396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG  475 (611)
Q Consensus       396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G  475 (611)
                      +.+++++ +++  ..++.++.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.||.+|+|++ +|
T Consensus       354 ~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~-~G  429 (542)
T PRK07786        354 VAARVVD-ENM--NDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIIS-GG  429 (542)
T ss_pred             ceEEEEC-CCC--CCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEecccceEEe-CC
Confidence            9999998 554  4556778999999999999999999999999999999999999999999999999999999997 99


Q ss_pred             eecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257          476 EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  552 (611)
Q Consensus       476 ~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  552 (611)
                      .+|++.+||++|.+||+|.+++|++.++.   +.+.+++++.....                   .    ...+++.+++
T Consensus       430 ~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-------------------~----~~~~~l~~~l  486 (542)
T PRK07786        430 ENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA-------------------A----LTLEDLAEFL  486 (542)
T ss_pred             EEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCC-------------------C----CCHHHHHHHH
Confidence            99999999999999999999999997654   46778887664310                   0    0123444555


Q ss_pred             HhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          553 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       553 ~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                      + ..++.|++|..++++++.      |+|++||++|++|+++|++..
T Consensus       487 ~-~~l~~~~~P~~i~~v~~i------P~t~~GKv~r~~L~~~~~~~~  526 (542)
T PRK07786        487 T-DRLARYKHPKALEIVDAL------PRNPAGKVLKTELRERYGACV  526 (542)
T ss_pred             H-hhccCCCCCCEEEEeccC------CCCCcccccHHHHHHHHHhhh
Confidence            4 679999999999998765      999999999999999997754

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=9.6e-62  Score=528.33  Aligned_cols=497  Identities=22%  Similarity=0.264  Sum_probs=396.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++||++|+++.   ++     +.+||+||++++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        32 ~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~  103 (547)
T PRK06087         32 TARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVP  103 (547)
T ss_pred             HHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEec
Confidence            46789999999875   43     58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhH-----HHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHh
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  156 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (611)
                      +++.++.+++.++++.++++++++++...     ..+.. ..........++..+.....         ....++.++..
T Consensus       104 l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  173 (547)
T PRK06087        104 LLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILP-LQNQLPQLQQIVGVDKLAPA---------TSSLSLSQIIA  173 (547)
T ss_pred             cchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHH-HHhhCCCCcEEEEeCCcCCC---------cCccCHHHHhc
Confidence            99999999999999999999999976321     11111 11122333445554432210         01223444433


Q ss_pred             cccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-H
Q 007257          157 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  235 (611)
Q Consensus       157 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~  235 (611)
                      .... ........++++++++|||||||.||+|.++|.++......+...+     ++..++++++..|++|.+++.. .
T Consensus       174 ~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g~~~~~  247 (547)
T PRK06087        174 DYEP-LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLGHATGFLHGV  247 (547)
T ss_pred             cCCc-ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchHHHHHHHHHH
Confidence            3211 1122335678999999999999999999999999988776655554     6788999999999999999765 5


Q ss_pred             HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257          236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  314 (611)
Q Consensus       236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (611)
                      +.+++.|+++++.+. ++..+++.++++++|+++++|..+..++......                              
T Consensus       248 ~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~------------------------------  297 (547)
T PRK06087        248 TAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ------------------------------  297 (547)
T ss_pred             HHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC------------------------------
Confidence            667888999998877 9999999999999999998887776665421110                              


Q ss_pred             CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-ccccCccCCCc
Q 007257          315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVS  393 (611)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~~  393 (611)
                                     ...++++|.+++||+++++++.+.+.+. |+++++.||+||+++......... ....+++|.++
T Consensus       298 ---------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~  361 (547)
T PRK06087        298 ---------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAA  361 (547)
T ss_pred             ---------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCccC
Confidence                           0112589999999999999999988775 999999999999998766544332 22336789999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  472 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~  472 (611)
                      +++.++++| +++  .+++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+++++++|.+++.||.+|+|+.
T Consensus       362 ~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~  438 (547)
T PRK06087        362 AGVEIKVVD-EAR--KTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVR  438 (547)
T ss_pred             CCceEEEEc-CCC--CCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhc
Confidence            999999998 554  455678899999999999999999999998888 6899999999999999999999999999996


Q ss_pred             CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257          473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  549 (611)
Q Consensus       473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  549 (611)
                       +|.+|+|.+||++|.++|+|.+++|++.++.   +.+++++++.....         ..      +        .+++.
T Consensus       439 -~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---------~~------~--------~~~~~  494 (547)
T PRK06087        439 -GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH---------SL------T--------LEEVV  494 (547)
T ss_pred             -CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC---------CC------C--------HHHHH
Confidence             9999999999999999999999999997655   37888888764210         00      1        12344


Q ss_pred             HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 007257          550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  601 (611)
Q Consensus       550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~  601 (611)
                      +++.+..++.+++|..|.++++.      |+|++||++|++|++++.+.+.+
T Consensus       495 ~~~~~~~l~~~~~P~~i~~v~~i------P~t~sGK~~r~~l~~~~~~~~~~  540 (547)
T PRK06087        495 AFFSRKRVAKYKYPEHIVVIDKL------PRTASGKIQKFLLRKDIMRRLTQ  540 (547)
T ss_pred             HHHHhccccccCCCeEEEEeccC------CCCCCCcCcHHHHHHHHHHHhhh
Confidence            44434679999999999999765      99999999999999998877643

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-62  Score=529.47  Aligned_cols=490  Identities=24%  Similarity=0.292  Sum_probs=390.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+++.   +      +++||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+++++
T Consensus        16 ~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~   86 (528)
T PRK07470         16 AARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP   86 (528)
T ss_pred             HHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEe
Confidence            46789999999875   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.++++++++++........ ..........++.+....            ...++.++.......
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~  153 (528)
T PRK07470         87 TNFRQTPDEVAYLAEASGARAMICHADFPEHAAA-VRAASPDLTHVVAIGGAR------------AGLDYEALVARHLGA  153 (528)
T ss_pred             cCccCCHHHHHHHHHhcCceEEEEcchhHHHHHH-HHhhCCcCceEEEeCCCc------------ccccHHHHHhcCCCC
Confidence            9999999999999999999999999875443321 111112333444443321            022455554332222


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|.++...+......+   ..+....|+++..+|++|.+++...+ .+..
T Consensus       154 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~  229 (528)
T PRK07470        154 RVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGAGIHQLC-QVAR  229 (528)
T ss_pred             CCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHHHHHHHH-HHhc
Confidence            2223345678999999999999999999999999876544322111   11456789999999999999986543 5667


Q ss_pred             CceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          242 GASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       242 G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      |+++++++.   ++..+++.++++++|++.++|++++.+.+....                                   
T Consensus       230 g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------------  274 (528)
T PRK07470        230 GAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV-----------------------------------  274 (528)
T ss_pred             CceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-----------------------------------
Confidence            777776643   889999999999999999999999887642110                                   


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC-------CccccCccCC
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-------EMCMVGTAGP  391 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~-------~~~~~~~~G~  391 (611)
                        +        ...++++|.+++||+++++...+++.+.+|.++++.||+||+++.+......       .....+++|.
T Consensus       275 --~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~  344 (528)
T PRK07470        275 --D--------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGF  344 (528)
T ss_pred             --C--------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceeeccCc
Confidence              0        0112589999999999999999999888899999999999998876654321       1223478899


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEE
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  471 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~  471 (611)
                      |++++++++++ +++  .+++.++.|||+++|+.++.||+++++.+...|.+|||+|||+|++++||++++.||.||+++
T Consensus       345 ~~~g~~~~i~d-~~~--~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~  421 (528)
T PRK07470        345 ERTGMEVQIQD-DEG--RELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYI  421 (528)
T ss_pred             ccCCcEEEEEC-CCC--CCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEeCCccceEE
Confidence            99999999998 554  356678899999999999999999999999989999999999999999999999999999999


Q ss_pred             cCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257          472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  548 (611)
Q Consensus       472 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  548 (611)
                      + +|++|+|.+||+.|.++|+|.+|+|++.++.   +.+++++++.++..        .        +.        +++
T Consensus       422 ~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~--------~~~  476 (528)
T PRK07470        422 S-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP--------V--------DE--------AEL  476 (528)
T ss_pred             e-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCC--------C--------CH--------HHH
Confidence            6 8999999999999999999999999998765   36777887765320        0        11        234


Q ss_pred             HHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          549 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       549 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .++++ +.|+.+++|..++++++.      |+|++||++|+.|++++++
T Consensus       477 ~~~l~-~~l~~~~~P~~~~~~~~i------P~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        477 LAWLD-GKVARYKLPKRFFFWDAL------PKSGYGKITKKMVREELEE  518 (528)
T ss_pred             HHHHH-HhhhcCCCCcEEEEeccC------CCCCcccccHHHHHHHHHh
Confidence            44443 678999999999988665      9999999999999998755

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=9.9e-62  Score=527.63  Aligned_cols=494  Identities=22%  Similarity=0.268  Sum_probs=390.5

Q ss_pred             CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      ++|+++|+++|+++..  ++     +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        36 ~~a~~~p~~~a~~~~~--~~-----~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  108 (546)
T PLN02330         36 QDAELYADKVAFVEAV--TG-----KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFS  108 (546)
T ss_pred             hhhhcCCCccEEEecC--CC-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEec
Confidence            3578899999998641  12     5899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      |+++..+.+++.++++.++++++++++.....+...      .. .++.++...          ......|.++......
T Consensus       109 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~  171 (546)
T PLN02330        109 GANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GL-PVIVLGEEK----------IEGAVNWKELLEAADR  171 (546)
T ss_pred             cCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CC-cEEEecCCC----------CCCcccHHHHHhhccc
Confidence            999999999999999999999999998766654321      11 123333211          1123346665544322


Q ss_pred             cC--CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHH
Q 007257          161 NE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  237 (611)
Q Consensus       161 ~~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~  237 (611)
                      ..  .......++++++++|||||||.||+|.++|.++...+.......   .......++.+...|++|.+++.. ++.
T Consensus       172 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~h~~g~~~~~~~  248 (546)
T PLN02330        172 AGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV---GPEMIGQVVTLGLIPFFHIYGITGICCA  248 (546)
T ss_pred             cCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc---CccccCceEEEEecChHHHHHHHHHHHH
Confidence            11  112334578999999999999999999999999987654321111   112234568899999999999875 556


Q ss_pred             HhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          238 FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       238 ~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      ++..|+++++.+. ++..+++.++++++|++.++|+++..+.....                                  
T Consensus       249 ~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------------------------------  294 (546)
T PLN02330        249 TLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI----------------------------------  294 (546)
T ss_pred             HhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc----------------------------------
Confidence            7888999888876 99999999999999999999999988764211                                  


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC----ccccCccCC
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGP  391 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G~  391 (611)
                         ...+++..      .+++.+++||+++++++.+++.+.+ ++++++.||+||++.+........    ....+++|.
T Consensus       295 ---~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~  365 (546)
T PLN02330        295 ---VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGF  365 (546)
T ss_pred             ---ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCcccc
Confidence               00011110      1579999999999999999999988 899999999999986654332111    123468999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeE
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI  470 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i  470 (611)
                      |++++++++++ ++++ .+++.|+.|||+++|+.++.||+++++.+.+.+ .+|||+|||+|++++||++++.||.+|+|
T Consensus       366 ~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i  443 (546)
T PLN02330        366 ILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELI  443 (546)
T ss_pred             ccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhh
Confidence            99999999998 4333 566778899999999999999999999998887 68999999999999999999999999999


Q ss_pred             EcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 007257          471 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  547 (611)
Q Consensus       471 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (611)
                      ++ +|++|+|.+||+.|.++|+|.+++|++.++.   +.++++|++.+...        .        +        .+.
T Consensus       444 ~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~--------~--------~--------~~~  498 (546)
T PLN02330        444 KY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK--------E--------S--------EED  498 (546)
T ss_pred             hc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCC--------C--------C--------HHH
Confidence            97 8999999999999999999999999997654   47888888765320        0        1        123


Q ss_pred             HHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          548 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       548 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      |.++++ ..|+.++.|+.+.++++.      |+|++||++|++|++++...
T Consensus       499 l~~~~~-~~l~~~~~p~~~~~v~~i------P~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        499 ILNFVA-ANVAHYKKVRVVQFVDSI------PKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             HHHHHH-HhcccccCceEEEEeccC------CCCCCcceeHHHHHHHHHhh
Confidence            344443 679999999999988765      99999999999999998653

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=4.6e-62  Score=544.84  Aligned_cols=480  Identities=20%  Similarity=0.240  Sum_probs=370.7

Q ss_pred             ccccCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +++++|| ++|+.+.   +     ++.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++
T Consensus       213 ~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~v  283 (718)
T PRK08043        213 AQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRIPA  283 (718)
T ss_pred             HHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCccc
Confidence            4678998 5777642   1     25899999999999999999887 59999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhc-cccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHH--H-h
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF--L-H  156 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~  156 (611)
                      |+++.++.+++.+++++++++++|++++....... ......+... ++.+.+...            ...+...  . .
T Consensus       284 pl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~------------~~~~~~~~~~~~  350 (718)
T PRK08043        284 MMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKD------------DVTTADKLWIFA  350 (718)
T ss_pred             ccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhh------------hcchhHHHHHHH
Confidence            99999999999999999999999998775442110 0111111112 222221100            0001000  0 0


Q ss_pred             cccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-H
Q 007257          157 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  235 (611)
Q Consensus       157 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~  235 (611)
                      ..........+..++++++++|||||||.||+|++||.++...+......+     ++..+|++++.+|++|.+++.. +
T Consensus       351 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~Pl~h~~g~~~~~  425 (718)
T PRK08043        351 HLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALPLFHSFGLTVGL  425 (718)
T ss_pred             HHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCcchhhhhhHHHH
Confidence            000001111234678999999999999999999999999998877665554     6788999999999999999876 5


Q ss_pred             HHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCC
Q 007257          236 EYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  313 (611)
Q Consensus       236 ~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (611)
                      +.++..|+++++.+.  ++..+.+.++++++|+++++|+++..+.+...                               
T Consensus       426 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------------------------------  474 (718)
T PRK08043        426 FTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN-------------------------------  474 (718)
T ss_pred             HHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC-------------------------------
Confidence            667999999998864  66788899999999999999998876543100                               


Q ss_pred             CCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc
Q 007257          314 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  393 (611)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~  393 (611)
                              .        ..+++||.+++||+++++++.+.|.+.+|+++++.||+||+++.++...+.. ...+++|+|+
T Consensus       475 --------~--------~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG~p~  537 (718)
T PRK08043        475 --------P--------YDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA-AKPGTVGRIL  537 (718)
T ss_pred             --------c--------ccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc-cCCCCCCCcC
Confidence                    0        0124899999999999999999999989999999999999988776554332 3458999999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCC--hHh-------hhhh-ccCCccccCceEEEccCCeEEEE
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN--PDL-------TRES-IIDGWFHTGDIGQILPNGVVKII  463 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~--~~~-------~~~~-~~~g~~~TGD~~~~~~dG~l~~~  463 (611)
                      |++++++++ +++      .++.|||+++|++++.||+++  ++.       +.+. +.+|||+|||+|++|+||++++.
T Consensus       538 pg~~~~i~d-~~~------~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~  610 (718)
T PRK08043        538 PGMDARLLS-VPG------IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQ  610 (718)
T ss_pred             CCCeeEEec-CCC------CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEE
Confidence            999999998 433      134699999999999999983  442       2222 25799999999999999999999


Q ss_pred             eccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHH
Q 007257          464 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  540 (611)
Q Consensus       464 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (611)
                      ||.||+|++ +|++|+|.+||+++.+|+.+.+++|++.++..   .++++++ ....                  +    
T Consensus       611 GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~-~~~~------------------~----  666 (718)
T PRK08043        611 GRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT-DSEL------------------T----  666 (718)
T ss_pred             ecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc-Cccc------------------C----
Confidence            999999997 89999999999999999988888888876553   5665543 1110                  1    


Q ss_pred             HHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       541 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                          .+++.+++++..|+.|++|+.++++++.      |+|++||++|++|++++.+
T Consensus       667 ----~~~l~~~~~~~~l~~~~vP~~i~~v~~l------P~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        667 ----REKLQQYAREHGVPELAVPRDIRYLKQL------PLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             ----HHHHHHHHHhcCCCcccCCceEEEeccc------CcCCCCCcCHHHHHHHHhc
Confidence                1235555554459999999999999765      9999999999999987644

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-62  Score=505.29  Aligned_cols=497  Identities=20%  Similarity=0.233  Sum_probs=405.4

Q ss_pred             CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCC
Q 007257            6 YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT   85 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~   85 (611)
                      .+|.+++++.   +..++....+||.|+.+++.++|..|.+.|+++||+|++++|+.+++++++|||.++|++.+++...
T Consensus        78 ~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~  154 (626)
T KOG1175|consen   78 GGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAG  154 (626)
T ss_pred             CCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeecc
Confidence            5889999988   4444444559999999999999999998899999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHhhcCccEEEEcchhHHHHhccc------------ccc-ccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257           86 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD------------CRS-AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  152 (611)
Q Consensus        86 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~------------~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  152 (611)
                      +++.++..+|+.++|+++++.+..........            ... .+....+++...             .....|+
T Consensus       155 fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~d~~~~  221 (626)
T KOG1175|consen  155 FSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR-------------NRDLFWS  221 (626)
T ss_pred             CCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc-------------cccccHH
Confidence            99999999999999999999875432211100            000 011111111111             1133555


Q ss_pred             HHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHH-HhhhhcccccccccCCCCCCcEEEEecchhhHHH
Q 007257          153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  231 (611)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g  231 (611)
                      .+.... .+...+.+.+.+|+.+|+|||||||.||++.+++.... ..+......+     .++++|+++|...+.|+.+
T Consensus       222 ~~~~~a-~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d~q~~dv~~~~~d~GWi~g  295 (626)
T KOG1175|consen  222 LELKKA-SPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----DLQPSDVLWCASDLGWITG  295 (626)
T ss_pred             HHhhhc-CCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----cCCCcceEEEecccCeeec
Confidence            554444 33444778899999999999999999999999987654 4444444444     8999999999999999999


Q ss_pred             HHH-HHHHhhcCceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  307 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (611)
                      .++ .+.+++.|+++++++.   ++..+++.+.+|++|++++.|+.++.+.+...+..                      
T Consensus       296 ~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~----------------------  353 (626)
T KOG1175|consen  296 HSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDV----------------------  353 (626)
T ss_pred             cchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccc----------------------
Confidence            988 5558999999999876   78999999999999999999999997754322211                      


Q ss_pred             hhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCC-ceeeccccCCCCCceeeccCCC-ccc
Q 007257          308 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDE-MCM  385 (611)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~g~~~~~~~~~~-~~~  385 (611)
                                   ...++        ++||.+.++|++++++...++.+.++. +|++.||+||+|+.+..+.... ...
T Consensus       354 -------------~~~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~  412 (626)
T KOG1175|consen  354 -------------TSYSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIK  412 (626)
T ss_pred             -------------ccccc--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcC
Confidence                         11111        389999999999999999999999987 7999999999999999999888 677


Q ss_pred             cCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEec--C-CcccccCCChHhhhhhc---cCCccccCceEEEccCCe
Q 007257          386 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLTRESI---IDGWFHTGDIGQILPNGV  459 (611)
Q Consensus       386 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~--~-~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~dG~  459 (611)
                      +++.+.|++++.+.|.| ++++..+... +.|+|+++.  | +.+++|++|++....++   ..|+|.|||.+++|+||+
T Consensus       413 pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY  490 (626)
T KOG1175|consen  413 PGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGY  490 (626)
T ss_pred             ccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCce
Confidence            79999999999999999 6665444433 789999987  3 77899999999666665   379999999999999999


Q ss_pred             EEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhc
Q 007257          460 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  536 (611)
Q Consensus       460 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~  536 (611)
                      +++.||.||+|++ +|+++++.|||+++.+||.|.|++|||.+++   +.+.|||+++++..                 +
T Consensus       491 ~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~-----------------~  552 (626)
T KOG1175|consen  491 YWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSH-----------------D  552 (626)
T ss_pred             EEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCC-----------------C
Confidence            9999999999997 9999999999999999999999999998876   59999999998631                 2


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          537 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       537 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      .    +.|.++|+.+++ ..+.++..|+.|.+++..      |+|.+||+.|++|++-...+
T Consensus       553 ~----~~L~kel~~~VR-~~igp~a~P~~I~~v~~L------PkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  553 P----EQLTKELVKHVR-SVIGPYAVPRLIVFVPGL------PKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             h----HHHHHHHHHHHH-hhcCcccccceeEecCCC------CccccchhHHHHHHHHhccC
Confidence            3    344445555554 789999999999999776      99999999999999987554

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=3.2e-61  Score=519.49  Aligned_cols=485  Identities=24%  Similarity=0.319  Sum_probs=391.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +| ++|+++|+.+.   ++     +.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        12 ~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~   82 (504)
T PRK07514         12 AF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLP   82 (504)
T ss_pred             Hh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEE
Confidence            35 78999999875   34     69999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..+++.++++++++++.....+......  .....++.++....             ..+.+..... ..
T Consensus        83 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~  146 (504)
T PRK07514         83 LNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSLLEAAAAA-PD  146 (504)
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccHHHhhhhc-Cc
Confidence            99999999999999999999999998766544222111  11222333332211             0111111111 11


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      ........++++++++|||||||.||+|.++|.++...+......+     ++..+|++++..|++|..++.. .+.++.
T Consensus       147 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~l~  221 (504)
T PRK07514        147 DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHGLFVATNVALL  221 (504)
T ss_pred             ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHHHHHHHHHHHh
Confidence            1122345688999999999999999999999999998877665555     6788999999999999999875 556789


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.+  .++|++.++|.++..+++...                                     
T Consensus       222 ~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~-------------------------------------  262 (504)
T PRK07514        222 AGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR-------------------------------------  262 (504)
T ss_pred             cCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC-------------------------------------
Confidence            9999998877 899999998  479999999999988764210                                     


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR  399 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~  399 (611)
                      ...        ..++++|.+++||+++++++.+.|.+.++.++++.||+||++......... ....+++|.|+++++++
T Consensus       263 ~~~--------~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~  333 (504)
T PRK07514        263 LTR--------EAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTVGFPLPGVSLR  333 (504)
T ss_pred             CCc--------ccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCcccccCCCCcEEE
Confidence            000        112489999999999999999999998999999999999998665433322 23347899999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCceec
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV  478 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v  478 (611)
                      +++ ++++ .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+++++++|.+++.||.||+|++ +|.+|
T Consensus       334 i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i  410 (504)
T PRK07514        334 VTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNV  410 (504)
T ss_pred             EEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEe-CCeEE
Confidence            998 4443 567788899999999999999999999999988 5899999999999999999999999999996 99999


Q ss_pred             CcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 007257          479 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  555 (611)
Q Consensus       479 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  555 (611)
                      +|.+||++|.++++|.+++|++.++.   +.+++++++.++..        .        +        .+++.+.++ +
T Consensus       411 ~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~--------~--------~~~l~~~~~-~  465 (504)
T PRK07514        411 YPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA--------L--------D--------EAAILAALK-G  465 (504)
T ss_pred             CHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCC--------C--------C--------HHHHHHHHH-h
Confidence            99999999999999999999997754   36888888775320        0        1        123444443 6


Q ss_pred             CCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          556 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       556 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      .|+.+++|..++++++.      |+|++||++|++|+++|++.
T Consensus       466 ~l~~~~~p~~i~~v~~~------p~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        466 RLARFKQPKRVFFVDEL------PRNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             hcccCCCCcEEEEeccC------CCCCCcceeHHHHHHHHHhh
Confidence            78999999999998765      99999999999999888764

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.1e-62  Score=538.25  Aligned_cols=502  Identities=18%  Similarity=0.159  Sum_probs=377.5

Q ss_pred             ccccCCCCCceeeeccccC---CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCE
Q 007257            2 SVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI   78 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~---~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   78 (611)
                      +|+++||++|+++.   +.   ..+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++
T Consensus        30 ~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v  105 (631)
T PRK07769         30 WAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALYAGRI  105 (631)
T ss_pred             HHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHHcCCE
Confidence            46789999999875   31   234467999999999999999999987 899999999999999999999999999999


Q ss_pred             EeeC-CCCCC--hhHHHHHHhhcCccEEEEcchhHHHHhccccccc-cCccEEEEecCCcHHHHHHhhhCCCceeeHHHH
Q 007257           79 CVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  154 (611)
Q Consensus        79 ~~~l-~~~~~--~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (611)
                      ++|+ ++..+  .+++.++++.++++++|++++....+........ .....++.++....              .    
T Consensus       106 ~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~----  167 (631)
T PRK07769        106 AVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD--------------E----  167 (631)
T ss_pred             EEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc--------------c----
Confidence            9999 55554  5789999999999999998875543322111000 01112332221100              0    


Q ss_pred             HhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH
Q 007257          155 LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  234 (611)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~  234 (611)
                         . .......+..++++++++|||||||.||+|++||.++...+......+     ++..++++++.+|++|.+|+..
T Consensus       168 ---~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~Pl~h~~gl~~  238 (631)
T PRK07769        168 ---V-GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSWLPFFHDMGLIT  238 (631)
T ss_pred             ---c-ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEeCCCcCchhhHH
Confidence               0 000111234678999999999999999999999999998777665555     6778999999999999999988


Q ss_pred             HHHHhhcCceEEEecC-----ChHHHHHHHhhhcC---eEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007257          235 EEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  306 (611)
Q Consensus       235 ~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~---t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (611)
                      .+.+++.|++++++..     ++..+++.++++++   +++.++|.++..+......     .                 
T Consensus       239 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~-----~-----------------  296 (631)
T PRK07769        239 VLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGL-----P-----------------  296 (631)
T ss_pred             HHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhcc-----c-----------------
Confidence            7778888999888742     78889999999886   7899999887766431000     0                 


Q ss_pred             HhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc---CC---ceeeccccCCCCCceeeccC
Q 007257          307 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTETCGPTTVCFP  380 (611)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~yG~tE~g~~~~~~~~  380 (611)
                                .......        .++++|.+++||+++++++.++|.+.|   |+   .+++.||+||++..++....
T Consensus       297 ----------~~~~~~~--------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~  358 (631)
T PRK07769        297 ----------KDGEPPL--------DLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPM  358 (631)
T ss_pred             ----------hhcccCc--------chhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCC
Confidence                      0000001        124899999999999999999999887   33   59999999999876554332


Q ss_pred             CCc--------------------------cccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCCh
Q 007257          381 DEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP  434 (611)
Q Consensus       381 ~~~--------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~  434 (611)
                      ...                          ....++|.+.++.+++++| ++++ .+++.|+.|||+|+||+++.||++++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd-~~~g-~~~~~ge~GEl~v~gp~v~~GY~~~~  436 (631)
T PRK07769        359 DEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD-PETA-SELPDGQIGEIWLHGNNIGTGYWGKP  436 (631)
T ss_pred             CCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc-CCCC-cCCCCCCEEEEEecCCCccccccCCh
Confidence            110                          0124789999999999998 3332 45677899999999999999999999


Q ss_pred             Hhhhhhcc------------------CCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhc-CcCcce
Q 007257          435 DLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIED  495 (611)
Q Consensus       435 ~~~~~~~~------------------~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~p~V~~  495 (611)
                      +.+.+.|.                  +|||+|||+|+++ ||+|+++||.||+|++ +|++|+|.|||++|.+ ||.|.+
T Consensus       437 ~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~p~v~~  514 (631)
T PRK07769        437 EETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEATKALRT  514 (631)
T ss_pred             hHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhccccccC
Confidence            99998884                  3899999999995 9999999999999997 9999999999999986 899998


Q ss_pred             --EEEEecCC----------------------CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 007257          496 --IWVYGDSL----------------------KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  551 (611)
Q Consensus       496 --~~v~~~~~----------------------~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  551 (611)
                        ++|++.++                      .+.++|+|++.++...               .+..++.+.+.      
T Consensus       515 ~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~---------------~~~~~l~~~~~------  573 (631)
T PRK07769        515 GYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHK---------------LDPQPIADDIR------  573 (631)
T ss_pred             CcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcccc---------------ccHHHHHHHHH------
Confidence              89998776                      1368888887754200               01222333333      


Q ss_pred             HHhCCCCC-cc-eeeeEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHhhh
Q 007257          552 AERNKLRG-FE-HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYEKL  606 (611)
Q Consensus       552 ~~~~~l~~-~~-~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~-~~~~~y~~~  606 (611)
                         +.|+. ++ .|+.+.+++.    +++|+|++||++|++|++.|.+ .+..-|-++
T Consensus       574 ---~~l~~~~~~~p~~~~~v~~----~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~  624 (631)
T PRK07769        574 ---AAIAVRHGVTVRDVLLVPA----GSIPRTSSGKIARRACRAAYLDGSLRSGYGQP  624 (631)
T ss_pred             ---HHHHHHcCCCccEEEEECC----CccccCCCcHHHHHHHHHHHHcCCCccccCCC
Confidence               33443 44 4777888853    2469999999999999998753 555555443

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.1e-61  Score=521.23  Aligned_cols=489  Identities=23%  Similarity=0.259  Sum_probs=395.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+.+.   +      +++||+||.+++.++|.+|.+.|+.+|++|+++++|++++++++|||+++|++++|
T Consensus         9 ~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~   79 (515)
T TIGR03098         9 AAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVP   79 (515)
T ss_pred             HHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEe
Confidence            46789999999876   3      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..+++.+++++++++......+...... .+....++.+++.....     ........|+++...... 
T Consensus        80 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-  152 (515)
T TIGR03098        80 INPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPG-CHDLRTLILVGEPAHAS-----EGGGESPSWPKLLALGDA-  152 (515)
T ss_pred             CCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhc-ccccceEEEecCccccc-----CCccccccHHHhhccccc-
Confidence            99999999999999999999999988765544332222 13344455554332100     001223356655433221 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                       ....+...+++++++|||||||.||+|.+||.++...+......+     .+..+|++++.+|++|.+++...+.++..
T Consensus       153 -~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~  226 (515)
T TIGR03098       153 -DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFNQLTTAFYV  226 (515)
T ss_pred             -cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHHHHHHHHHc
Confidence             123344568899999999999999999999999998877766555     67889999999999999999888889999


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++.+. ++..+++.++++++|++.++|+++..+.+....                                     
T Consensus       227 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------------  269 (515)
T TIGR03098       227 GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-------------------------------------  269 (515)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-------------------------------------
Confidence            999998876 899999999999999999999999887541000                                     


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR  399 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~  399 (611)
                               ...++++|.++++|+++++++.+.+.+.+ ++.+++.||+||++..............+++|.++++++++
T Consensus       270 ---------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~  340 (515)
T TIGR03098       270 ---------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVL  340 (515)
T ss_pred             ---------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEE
Confidence                     01124899999999999999999999988 78899999999998765544333234458999999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc------------CCccccCceEEEccCCeEEEEeccC
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~------------~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      +++ +++  .+++.++.|||+++|+.++.||+++++.+.+.|.            ++||+|||+|++++||++++.||.+
T Consensus       341 i~~-~~~--~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~  417 (515)
T TIGR03098       341 VLR-EDG--SECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRD  417 (515)
T ss_pred             EEC-CCC--CCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccc
Confidence            998 554  3456788999999999999999999988876652            3489999999999999999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      |+|++ +|.+|+|.+||++|.++|.|.+|+|++.++.   +.+++++++.....        .        +        
T Consensus       418 d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~--------~--------~--------  472 (515)
T TIGR03098       418 EMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE--------L--------D--------  472 (515)
T ss_pred             cceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCC--------C--------C--------
Confidence            99997 8999999999999999999999999997654   47788877543210        0        1        


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      .+.+.++++ ++|+.+++|..++++++.      |+|.+||++|++|++
T Consensus       473 ~~~l~~~l~-~~l~~~~~p~~i~~v~~i------P~t~~GK~~r~~L~~  514 (515)
T TIGR03098       473 RAALLAECR-ARLPNYMVPALIHVRQAL------PRNANGKIDRKALAA  514 (515)
T ss_pred             HHHHHHHHH-hhCccccCCCEEEEeccC------CCCCCCCCcHHHhcc
Confidence            123444443 679999999999998765      999999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.7e-61  Score=517.20  Aligned_cols=479  Identities=22%  Similarity=0.281  Sum_probs=387.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.    +     +++||.||.+++.++|.+|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus        11 ~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   81 (497)
T PRK06145         11 HARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP   81 (497)
T ss_pred             HHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence            57889999999876    3     68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.+++++++++++.......        ....+.++.....             .+..+.. ....
T Consensus        82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~~~~~~-~~~~  139 (497)
T PRK06145         82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL--------ETPKIVIDAAAQA-------------DSRRLAQ-GGLE  139 (497)
T ss_pred             cccccCHHHHHHHHHhcCCcEEEEccchhhhhhc--------ccceEEecCcccc-------------hhHHHhc-cCCC
Confidence            9999999999999999999999998765432210        0112222211100             0111111 0011


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      ........++++++++|||||||.||+|.++|.++..........+     ++..+++++...|++|.+++.. .+.++.
T Consensus       140 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~l~  214 (497)
T PRK06145        140 IPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGAFDLPGIAVLW  214 (497)
T ss_pred             CCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhHHHHHHHHHHh
Confidence            1112245678999999999999999999999999886655444433     6788999999999999998875 456788


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++++++|++.++|+++..++......                                   
T Consensus       215 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~-----------------------------------  259 (497)
T PRK06145        215 VGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD-----------------------------------  259 (497)
T ss_pred             ccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc-----------------------------------
Confidence            9999988776 9999999999999999999999998876421100                                   


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCC-CccccCccCCCccCee
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVGTAGPVSVYSE  397 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~-~~~~~~~~G~~~~~~~  397 (611)
                        .        ..++++|.+++||+++++++.+++.+.+ +.++++.||+||+++..+..... .....+++|.|+++++
T Consensus       260 --~--------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~  329 (497)
T PRK06145        260 --R--------FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVE  329 (497)
T ss_pred             --c--------cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCce
Confidence              0        0114899999999999999999999888 68899999999999866544332 2234478999999999


Q ss_pred             EEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257          398 LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY  477 (611)
Q Consensus       398 v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~  477 (611)
                      +++.+ +++  ..++.++.|||+++|++++.||+++++.+.+.|.++||+|||+|++++||++++.||.||+|++ +|.+
T Consensus       330 ~~i~~-~~~--~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~G~~  405 (497)
T PRK06145        330 IRIAD-GAG--RWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIIS-GGEN  405 (497)
T ss_pred             EEEEC-CCC--CCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEeccccceEEe-CCeE
Confidence            99998 554  3556778999999999999999999999999999999999999999999999999999999997 9999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      ++|.+||+.|.++|+|.+++|++.++.   +.+.+++++.+..        ..        .        .++|.++++ 
T Consensus       406 v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--------~~--------~--------~~~l~~~~~-  460 (497)
T PRK06145        406 IASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGA--------TL--------T--------LEALDRHCR-  460 (497)
T ss_pred             ECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCC--------CC--------C--------HHHHHHHHH-
Confidence            999999999999999999999997755   4788888876532        00        1        123444443 


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                      +.|+.+++|..+.++++.      |+|++||++|++|++++.
T Consensus       461 ~~l~~~~~p~~i~~v~~i------P~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        461 QRLASFKVPRQLKVRDEL------PRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HhhhcCCCCCEEEEeccC------CCCCcccccHHHHHHHhc
Confidence            678999999999998665      999999999999998753

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.2e-61  Score=525.11  Aligned_cols=496  Identities=26%  Similarity=0.342  Sum_probs=394.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++|+++|+++.   ++.    +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|+++++
T Consensus        27 ~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~   99 (558)
T PRK12583         27 TVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVN   99 (558)
T ss_pred             HHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEe
Confidence            46789999999875   221    68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH-----HHh---ccc---------cccccCccEEEEecCCcHHHHHHhhhC
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELL---SPD---------CRSAQRLRVMVCFTSLTAEQKEMAVQT  144 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~-----~~~---~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~  144 (611)
                      +++.++.+++.+++++++++++++++....     .+.   ...         ....+....++.......         
T Consensus       100 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  170 (558)
T PRK12583        100 INPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP---------  170 (558)
T ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC---------
Confidence            999999999999999999999999764321     110   000         001122233333332211         


Q ss_pred             CCceeeHHHHHhccccc-----CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcE
Q 007257          145 GIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  219 (611)
Q Consensus       145 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  219 (611)
                       .....|+++.......     ........++++++++|||||||.||+|.++|.++...+......+     ++..+|+
T Consensus       171 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~  244 (558)
T PRK12583        171 -PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL-----GLTEHDR  244 (558)
T ss_pred             -ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-----CCCCCCe
Confidence             1223444443322110     0111234578899999999999999999999999988877766555     7788999


Q ss_pred             EEEecchhhHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHH
Q 007257          220 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  296 (611)
Q Consensus       220 ~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  296 (611)
                      +++..|++|.+|... .+.++..|+++++...  ++..+++.++++++|+++++|+++..+......             
T Consensus       245 ~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~-------------  311 (558)
T PRK12583        245 LCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR-------------  311 (558)
T ss_pred             EEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc-------------
Confidence            999999999999876 5556888998887643  899999999999999999999998766532110             


Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC-CceeeccccCCCCCce
Q 007257          297 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPT  375 (611)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~g~~~  375 (611)
                                              ..        ..++++|.+++||++++++..+++.+.++ ..+++.||+||++.++
T Consensus       312 ------------------------~~--------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  359 (558)
T PRK12583        312 ------------------------GN--------FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVS  359 (558)
T ss_pred             ------------------------cC--------CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccce
Confidence                                    00        01148999999999999999999988885 5799999999999887


Q ss_pred             eeccCCC--ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceE
Q 007257          376 TVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG  452 (611)
Q Consensus       376 ~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~  452 (611)
                      ..+....  .....++|.|++++.+++++ +++  .+++.++.|||+++|+.++.||+++++.+...| .+|||+|||+|
T Consensus       360 ~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~  436 (558)
T PRK12583        360 LQTTAADDLERRVETVGRTQPHLEVKVVD-PDG--ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLA  436 (558)
T ss_pred             eccCcccccccccCCCCccCCCCeEEEEC-CCC--CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceE
Confidence            7654322  23457899999999999998 553  566778899999999999999999999998888 78999999999


Q ss_pred             EEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCC
Q 007257          453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  529 (611)
Q Consensus       453 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~  529 (611)
                      ++++||++++.||.+|+|++ +|.+|+|.+||++|.++|+|.+++|++.++.   +.+++++++.++..        .  
T Consensus       437 ~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--  505 (558)
T PRK12583        437 TMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHA--------A--  505 (558)
T ss_pred             EECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCC--------C--
Confidence            99999999999999999996 9999999999999999999999999997654   47888888765320        0  


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          530 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                            +        .++++++++ ++|+.+++|..++++++.      |+|++||++|++|++++.+++
T Consensus       506 ------~--------~~~i~~~~~-~~L~~~~~P~~i~~v~~l------P~t~sGK~~r~~L~~~~~~~~  554 (558)
T PRK12583        506 ------S--------EEELREFCK-ARIAHFKVPRYFRFVDEF------PMTVTGKVQKFRMREISIEEL  554 (558)
T ss_pred             ------C--------HHHHHHHHH-hhcccCcCCcEEEEeccC------CCCCCCCccHHHHHHHHHhhc
Confidence                  1        123445544 679999999999998765      999999999999999886654

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=6.2e-61  Score=519.89  Aligned_cols=486  Identities=19%  Similarity=0.206  Sum_probs=388.1

Q ss_pred             CCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCC
Q 007257            7 PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTL   86 (611)
Q Consensus         7 pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~   86 (611)
                      ||++|+++.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|++++++.+..
T Consensus        37 p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~  107 (536)
T PRK10946         37 SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSH  107 (536)
T ss_pred             CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCccc
Confidence            999999976   2      6899999999999999999999999999999999999999999999999999888777777


Q ss_pred             ChhHHHHHHhhcCccEEEEcchhH----HHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccC
Q 007257           87 GPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  162 (611)
Q Consensus        87 ~~~~l~~~l~~~~~~~li~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (611)
                      ...++..+++.++++++++++...    ...........+....++......             ...+.++..... ..
T Consensus       108 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~  173 (536)
T PRK10946        108 QRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG-------------EHSLDDAINHPA-ED  173 (536)
T ss_pred             cHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------CccHHHHhhCcc-cc
Confidence            788899999999999999986431    111111111223334444332211             122333332221 11


Q ss_pred             CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--HHHHhh
Q 007257          163 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--EEYFFR  240 (611)
Q Consensus       163 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--~~~~l~  240 (611)
                      ....+..++++++++|||||||.||+|+++|.++...+......+     ++..++++++.+|++|.+++..  .+.++.
T Consensus       174 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~  248 (536)
T PRK10946        174 FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAAHNYPMSSPGALGVFL  248 (536)
T ss_pred             cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCccccccchhhhHHHHhh
Confidence            123345688999999999999999999999999999888766655     6788999999999999888764  566788


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++++++|++.++|.++..+++.......                                 
T Consensus       249 ~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~---------------------------------  295 (536)
T PRK10946        249 AGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS---------------------------------  295 (536)
T ss_pred             cCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc---------------------------------
Confidence            9999988765 889999999999999999999999988764211100                                 


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc-cCeeE
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS-VYSEL  398 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~-~~~~v  398 (611)
                                ...+++++.+++||+++++++.+.+.+.+|+++++.||+||++..............+++|.|+ ++..+
T Consensus       296 ----------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v  365 (536)
T PRK10946        296 ----------RAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEV  365 (536)
T ss_pred             ----------cccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcccCCCceE
Confidence                      0111489999999999999999999998999999999999976443322222223347889998 78999


Q ss_pred             EEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257          399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY  477 (611)
Q Consensus       399 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~  477 (611)
                      ++.+ +++  .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|++|++++.||.+|++++ +|.+
T Consensus       366 ~i~d-~~~--~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~-~G~~  441 (536)
T PRK10946        366 WVAD-ADG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINR-GGEK  441 (536)
T ss_pred             EEEC-CCC--CCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeec-CCEE
Confidence            9988 544  456788999999999999999999999999988 6899999999999999999999999999996 9999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      ++|.+||+.|.++|+|.+++|++.++.   +.+++++++.+..                  +.        .++.+++++
T Consensus       442 v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~------------------~~--------~~l~~~~~~  495 (536)
T PRK10946        442 IAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL------------------KA--------VQLRRFLRE  495 (536)
T ss_pred             EcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC------------------CH--------HHHHHHHHh
Confidence            999999999999999999999997755   3678888876532                  21        234444443


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                      ..++.|++|..+.++++.      |+|++||++|++|+++++...
T Consensus       496 ~~l~~~~~P~~~~~~~~i------P~t~~GKv~r~~L~~~~~~~~  534 (536)
T PRK10946        496 QGIAEFKLPDRVECVDSL------PLTAVGKVDKKQLRQWLASRA  534 (536)
T ss_pred             CCccccccCcEEEEeccC------CCCCCCcccHHHHHHHHHhhc
Confidence            459999999999998765      999999999999999876643

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-61  Score=520.78  Aligned_cols=487  Identities=23%  Similarity=0.252  Sum_probs=393.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++|+++|+++.   +      +.+||.||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|+++++
T Consensus        21 ~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~   91 (524)
T PRK06188         21 ALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTA   91 (524)
T ss_pred             HHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEe
Confidence            56789999999876   3      69999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchh-HHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      ++|..+.+++..+++.++++++++++.. ...... ..........++.+......            ....+..... .
T Consensus        92 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~  157 (524)
T PRK06188         92 LHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPDG------------VDLLAAAAKF-G  157 (524)
T ss_pred             cccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccch------------hhHHHhhhcc-C
Confidence            9999999999999999999999998763 222211 11122333444444432210            0000000000 0


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR  240 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~  240 (611)
                      .........++++++++|||||||.||+|.++|.++...+......+     ++..++++++..|++|.+++. .+.+++
T Consensus       158 ~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~g~~-~~~~l~  231 (524)
T PRK06188        158 PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAGGAF-FLPTLL  231 (524)
T ss_pred             cccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhhhHH-HHHHHH
Confidence            01111123456799999999999999999999999998888766665     778899999999999988864 456788


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++++++|+++++|+++..+++.....                                   
T Consensus       232 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-----------------------------------  276 (524)
T PRK06188        232 RGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-----------------------------------  276 (524)
T ss_pred             cCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-----------------------------------
Confidence            9999999887 8999999999999999999999998876521110                                   


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-----ccccCccCCCcc
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----MCMVGTAGPVSV  394 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-----~~~~~~~G~~~~  394 (611)
                                ...++++|.+++||++++++....+.+.++..+++.||+||++..+.......     .....++|.|++
T Consensus       277 ----------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~  346 (524)
T PRK06188        277 ----------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTP  346 (524)
T ss_pred             ----------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccccC
Confidence                      01124899999999999999888888888999999999999977666543321     234478999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCC
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  474 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~  474 (611)
                      ++++++++ +++  .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|++++||.+++.||.+|++++ +
T Consensus       347 g~~v~i~~-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~  422 (524)
T PRK06188        347 GLRVALLD-EDG--REVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVT-G  422 (524)
T ss_pred             CcEEEEEc-CCC--CCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEeccccceec-C
Confidence            99999998 554  4566788999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             ceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 007257          475 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  551 (611)
Q Consensus       475 G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  551 (611)
                      |++|+|.+||++|.++|+|.+++|++.++.   +.+.+++++++....                .        .++|.++
T Consensus       423 G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------------~--------~~~l~~~  478 (524)
T PRK06188        423 GFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAV----------------D--------AAELQAH  478 (524)
T ss_pred             CEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCC----------------C--------HHHHHHH
Confidence            999999999999999999999999997654   478888887753200                1        1234444


Q ss_pred             HHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          552 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       552 ~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      ++ ..++.+++|..++++++.      |+|++||++|++|+++|.+
T Consensus       479 ~~-~~l~~~~~p~~i~~v~~~------P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        479 VK-ERKGSVHAPKQVDFVDSL------PLTALGKPDKKALRARYWE  517 (524)
T ss_pred             HH-HhcccCCCCcEEEEecCC------CCCccccccHHHHHHHHHh
Confidence            43 678999999999999765      9999999999999999854

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.5e-61  Score=515.28  Aligned_cols=471  Identities=23%  Similarity=0.269  Sum_probs=378.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+.+||++|+.+..  ++     +.+||.||.+++.++|.+|.+.|+.+||+|+++++|++++++++|||+++|++++|
T Consensus         4 ~a~~~p~~~a~~~~~--~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~   76 (488)
T PRK09088          4 HARLQPQRLAAVDLA--LG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVP   76 (488)
T ss_pred             hhhhCCCceEEEecC--CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEe
Confidence            578899999998631  22     68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc-c
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK-V  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  160 (611)
                      +++.++.+++.+++++++++++++++.......           .                     ...++.+..... .
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~~~  124 (488)
T PRK09088         77 LNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASADAL  124 (488)
T ss_pred             eCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcccc
Confidence            999999999999999999999999765332100           0                     001111111110 0


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF  239 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l  239 (611)
                      .........++++++++|||||||.||+|.++|+++...+..+....     .+..++++++.+|++|.+++.. +..++
T Consensus       125 ~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~~l  199 (488)
T PRK09088        125 EPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRPVL  199 (488)
T ss_pred             ccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHHHH
Confidence            11112234568899999999999999999999999987766655444     5778999999999999999876 44568


Q ss_pred             hcCceEEEecC-ChHHHHHHHh--hhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          240 RRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       240 ~~G~~~~~~~~-~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      ..|+++++.+. ++..++..+.  ++++|+++++|.++..+.....                                  
T Consensus       200 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~----------------------------------  245 (488)
T PRK09088        200 AVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG----------------------------------  245 (488)
T ss_pred             hcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC----------------------------------
Confidence            88999888766 7888888876  4899999999999987754110                                  


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC--CccccCccCCCcc
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPVSV  394 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~--~~~~~~~~G~~~~  394 (611)
                         .+.        ..+++++.+++||++++....+.+.+. |+++++.||+||++++.......  .....+++|.+.+
T Consensus       246 ---~~~--------~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~  313 (488)
T PRK09088        246 ---FDA--------AALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTP  313 (488)
T ss_pred             ---cCc--------cccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccCCC
Confidence               000        011489999999999999988887765 89999999999999765432211  1224478999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcC
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  473 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~  473 (611)
                      ++++++++ +++  .+++.++.|||+|+|++++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+|+|++ 
T Consensus       314 ~~~~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-  389 (488)
T PRK09088        314 TVQTRVVD-DQG--NDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFIS-  389 (488)
T ss_pred             CcEEEEEC-CCC--CCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEe-
Confidence            99999998 554  345677899999999999999999999998888 5899999999999999999999999999996 


Q ss_pred             CceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 007257          474 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  550 (611)
Q Consensus       474 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  550 (611)
                      +|.+++|.+||++|+++|+|.+++|++.++.   +..+++++++++..        .        +        .+++.+
T Consensus       390 ~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------~--------~~~l~~  445 (488)
T PRK09088        390 GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP--------L--------D--------LERIRS  445 (488)
T ss_pred             CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC--------C--------C--------HHHHHH
Confidence            9999999999999999999999999997754   46778888765320        0        1        123444


Q ss_pred             HHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          551 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       551 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +++ ..++.+++|..+.++++.      |+|++||++|++|++++.+
T Consensus       446 ~~~-~~l~~~~~p~~i~~~~~i------P~t~~gKi~r~~l~~~~~~  485 (488)
T PRK09088        446 HLS-TRLAKYKVPKHLRLVDAL------PRTASGKLQKARLRDALAA  485 (488)
T ss_pred             HHH-hhCcCCCCCCEEEEcccC------CCCCCCceeHHHHHHHHHh
Confidence            444 678999999999998765      9999999999999998865

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.3e-61  Score=524.17  Aligned_cols=501  Identities=23%  Similarity=0.293  Sum_probs=385.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +++++|+++|+++.    +     +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|||+++|++++
T Consensus        33 ~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v  103 (562)
T PRK12492         33 SCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV  103 (562)
T ss_pred             HHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence            46779999998865    3     6899999999999999999985 999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEec--CCcHHHHHH-------------hhhCC
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQKEM-------------AVQTG  145 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-------------~~~~~  145 (611)
                      ++++.++.+++.+++++++++++++++............  .....++...  +........             .....
T Consensus       104 ~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK12492        104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHL  181 (562)
T ss_pred             ccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhcccccccccccccccCC
Confidence            999999999999999999999999987544333221111  0111111110  000000000             00000


Q ss_pred             CceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccC----CCCC-CcEE
Q 007257          146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED----KMTV-DDVY  220 (611)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~----~~~~-~~~~  220 (611)
                      ....+|+++............+...+++++++|||||||.||+|+++|+++...+......+.....    .... .+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (562)
T PRK12492        182 PQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVM  261 (562)
T ss_pred             cccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEE
Confidence            1223556555433222222334567899999999999999999999999998776654443311100    0222 3577


Q ss_pred             EEecchhhHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHH
Q 007257          221 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  297 (611)
Q Consensus       221 l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  297 (611)
                      ++.+|++|.+++.. ++..+..|++.++...  ++..++..++++++|++.++|+++..+.+...               
T Consensus       262 ~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------------  326 (562)
T PRK12492        262 IAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG---------------  326 (562)
T ss_pred             EEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC---------------
Confidence            89999999999876 4445777887766542  88999999999999999999999988764211               


Q ss_pred             HHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceee
Q 007257          298 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  377 (611)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~  377 (611)
                                            ...        ..++++|.+++||+++++.+.+.|.+.+++++++.||+||++++++.
T Consensus       327 ----------------------~~~--------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  376 (562)
T PRK12492        327 ----------------------FKD--------LDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVAST  376 (562)
T ss_pred             ----------------------ccc--------ccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeee
Confidence                                  000        11248999999999999999999998889999999999999987776


Q ss_pred             ccCCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEcc
Q 007257          378 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  456 (611)
Q Consensus       378 ~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~  456 (611)
                      +........+++|.|++++++++++ +++  .+++.++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++
T Consensus       377 ~~~~~~~~~~~~G~p~~~~~v~ivd-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~  453 (562)
T PRK12492        377 NPYGELARLGTVGIPVPGTALKVID-DDG--NELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDP  453 (562)
T ss_pred             cCCcccccCCccceecCCCEEEEEC-CCC--CCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECC
Confidence            5544444457899999999999998 554  456678899999999999999999999999888 689999999999999


Q ss_pred             CCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHH
Q 007257          457 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  533 (611)
Q Consensus       457 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~  533 (611)
                      +|.+++.||.+|+|++ +|++|+|.+||+.|.+||.|.+++|++.++.   +.+.+++++.+...               
T Consensus       454 ~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------------  517 (562)
T PRK12492        454 DGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL---------------  517 (562)
T ss_pred             CCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC---------------
Confidence            9999999999999997 8999999999999999999999999997654   36778877654210               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          534 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       534 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                        +        .++++++++ +.|+.|++|..+.++++.      |+|++||++|++|++.
T Consensus       518 --~--------~~~i~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        518 --S--------VEELKAYCK-ENFTGYKVPKHIVLRDSL------PMTPVGKILRRELRDI  561 (562)
T ss_pred             --C--------HHHHHHHHH-HhcccccCCcEEEEeccC------CCCCCCceeHHHHHhh
Confidence              1        123444544 679999999999998765      9999999999999864

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=4.2e-61  Score=567.98  Aligned_cols=494  Identities=23%  Similarity=0.245  Sum_probs=394.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   ++     +++||+||.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|++++|
T Consensus       624 ~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~  694 (1146)
T PRK08633        624 TAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVPVN  694 (1146)
T ss_pred             HHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence            47889999999865   33     589999999999999999987 5899999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhcccc-ccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      ++|..+.+++.+++++++++++++++...+.+..... ...+....++..++....        ......+.+.......
T Consensus       695 l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  766 (1146)
T PRK08633        695 LNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAK--------ISKVDKLTALLAARLL  766 (1146)
T ss_pred             eCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccc--------cchhHHHHHHHHhccC
Confidence            9999999999999999999999999876665432110 011223344444332110        0000111111111000


Q ss_pred             c-----CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-
Q 007257          161 N-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-  234 (611)
Q Consensus       161 ~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-  234 (611)
                      +     ........++++++++|||||||.||+|.+||+++...+......+     +...+|++++.+|++|.+++.. 
T Consensus       767 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~  841 (1146)
T PRK08633        767 PARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPFFHSFGLTVT  841 (1146)
T ss_pred             CHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEEcCcHHHHHhHHHH
Confidence            0     0001345679999999999999999999999999998887766655     6788999999999999999876 


Q ss_pred             HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 007257          235 EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  312 (611)
Q Consensus       235 ~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (611)
                      .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+.+....                             
T Consensus       842 ~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------  892 (1146)
T PRK08633        842 LWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL-----------------------------  892 (1146)
T ss_pred             HHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc-----------------------------
Confidence            6677899999988764  889999999999999999999999887652110                             


Q ss_pred             CCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC---------c
Q 007257          313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---------M  383 (611)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~---------~  383 (611)
                                      ....++++|.+++||+++++++.+.+++.+|+++++.||+||++++++...++.         .
T Consensus       893 ----------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~  956 (1146)
T PRK08633        893 ----------------HPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTG  956 (1146)
T ss_pred             ----------------CcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccccccC
Confidence                            011125899999999999999999999999999999999999998776553321         1


Q ss_pred             cccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccC----CccccCceEEEccCCe
Q 007257          384 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGV  459 (611)
Q Consensus       384 ~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~----g~~~TGD~~~~~~dG~  459 (611)
                      ...+++|.|+|+++++++| ++++ .+++.|+.|||+++|++++.||+++++.+.+.+.+    |||+|||+|++|+||+
T Consensus       957 ~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~ 1034 (1146)
T PRK08633        957 SKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGF 1034 (1146)
T ss_pred             CCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCce
Confidence            2357899999999999998 4433 56678899999999999999999999999998876    9999999999999999


Q ss_pred             EEEEeccCCeEEcCCceecCcHHHHHHHhcCc--CcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHH
Q 007257          460 VKIIDRKKNLIKISQGEYVALEYLENVYCVAP--IIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  534 (611)
Q Consensus       460 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p--~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~  534 (611)
                      +++.||.||+|++ +|++|+|.+||++|.+||  .+.+++|++.+++   +.+++++++...                  
T Consensus      1035 l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~------------------ 1095 (1146)
T PRK08633       1035 LTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAE------------------ 1095 (1146)
T ss_pred             EEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCcc------------------
Confidence            9999999999996 999999999999999999  4678999987765   378888776321                  


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          535 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       535 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                       +.        +++++.++++.+|.|++|..++++++.      |+|++||++|++|++..++.
T Consensus      1096 -~~--------~~l~~~~~~~~l~~~~~P~~i~~~~~i------P~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1096 -DV--------EELKRAIKESGLPNLWKPSRYFKVEAL------PLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             -CH--------HHHHHHHHhcCCCcccCCcEEEEecCc------CCCCCCCCcHHHHHHHHHHh
Confidence             11        233344434679999999999998765      99999999999999876553

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.8e-61  Score=521.01  Aligned_cols=475  Identities=18%  Similarity=0.185  Sum_probs=354.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.     +++.++++||+||.++++++|++|.+.  ++||+|+++++|++++++++|||+++|++++ 
T Consensus        11 ~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-   82 (525)
T PRK05851         11 AMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-   82 (525)
T ss_pred             HhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-
Confidence            57789999999876     334589999999999999999999988  7999999999999999999999999999865 


Q ss_pred             CCCCC--------ChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHH
Q 007257           82 LYDTL--------GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  153 (611)
Q Consensus        82 l~~~~--------~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (611)
                      +++..        ..+++.+++..++++++|+++.....+.....    .    +.+.+.                  ..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~~------------------~~  136 (525)
T PRK05851         83 ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHDL------------------AT  136 (525)
T ss_pred             CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----cccccc------------------cc
Confidence            33322        23455667899999999998765543322110    0    000000                  00


Q ss_pred             HHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCC-CCcEEEEecchhhHHHH
Q 007257          154 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLSFLPLAHILDR  232 (611)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~p~~~~~g~  232 (611)
                      ....  ..........++++++++|||||||.||+|+++|.++...+......+     ++. .+|++++.+|++|.+++
T Consensus       137 ~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~pl~h~~g~  209 (525)
T PRK05851        137 AAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWLPLYHDMGL  209 (525)
T ss_pred             cccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcCCCccCccH
Confidence            0000  000111234678999999999999999999999999998887766655     677 88999999999999999


Q ss_pred             HHHHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007257          233 VIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  307 (611)
Q Consensus       233 ~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (611)
                      ...+.+++.|+++++.+.     ++..+++.++++++|++...|.++..+.......                       
T Consensus       210 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~-----------------------  266 (525)
T PRK05851        210 AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRV-----------------------  266 (525)
T ss_pred             HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccc-----------------------
Confidence            877888999999998762     5778999999999998755444444432211000                       


Q ss_pred             hhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHH---cCC---ceeeccccCCCCCceeeccCC
Q 007257          308 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETCGPTTVCFPD  381 (611)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~yG~tE~g~~~~~~~~~  381 (611)
                                   ..        ..+++||.+++||+++++++.++|.+.   +|.   .+++.||+||++..+....+.
T Consensus       267 -------------~~--------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~  325 (525)
T PRK05851        267 -------------SD--------VDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPG  325 (525)
T ss_pred             -------------cC--------CCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCC
Confidence                         00        011489999999999999999988764   454   499999999998766543321


Q ss_pred             C--------------ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccc
Q 007257          382 E--------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH  447 (611)
Q Consensus       382 ~--------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~  447 (611)
                      .              ....+++|+|+++++++|+| +++. .+++.++.|||+++|++++.||+++++.+    .+|||+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~----~~~~~~  399 (525)
T PRK05851        326 IGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID----PDDWFP  399 (525)
T ss_pred             CCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC----CCCcee
Confidence            1              12336799999999999998 4443 44667889999999999999999998643    378999


Q ss_pred             cCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEecChHHHHHHHHH
Q 007257          448 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYS  524 (611)
Q Consensus       448 TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~  524 (611)
                      |||+|+++ +|.++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++..   .+.++|+.....       
T Consensus       400 TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~-------  470 (525)
T PRK05851        400 TGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRG-------  470 (525)
T ss_pred             ccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecC-------
Confidence            99999996 8999999999999997 99999999999999999999999999865442   455555433110       


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          525 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                        .        +..++.+.+.+.+...     +  +++|+.+++++.    +.+|+|++||++|++|++.+++
T Consensus       471 --~--------~~~~~~~~~~~~l~~~-----l--~~~P~~~~~v~~----~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        471 --P--------DEAGARSEVVQRVASE-----C--GVVPSDVVFVAP----GSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             --c--------chHHHHHHHHHHHHHH-----h--CCCccEEEEECC----CCcCcCcchHHHHHHHHHHHHh
Confidence              0        1122333333333222     2  278889999862    1359999999999999988754

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.1e-60  Score=519.62  Aligned_cols=497  Identities=27%  Similarity=0.345  Sum_probs=394.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .++++||++|+++.   ++.    +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        25 ~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~   97 (559)
T PRK08315         25 TAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVT   97 (559)
T ss_pred             HHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEe
Confidence            46789999999886   321    68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH-----HHh---ccc---------cccccCccEEEEecCCcHHHHHHhhhC
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELL---SPD---------CRSAQRLRVMVCFTSLTAEQKEMAVQT  144 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~-----~~~---~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~  144 (611)
                      ++|..+.+++..+++.++++++++++....     .+.   ...         ....+..+.++......          
T Consensus        98 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  167 (559)
T PRK08315         98 INPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK----------  167 (559)
T ss_pred             cCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC----------
Confidence            999999999999999999999999875321     110   000         00012223344333211          


Q ss_pred             CCceeeHHHHHhccccc-----CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcE
Q 007257          145 GIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  219 (611)
Q Consensus       145 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  219 (611)
                      ......|.++.......     ........++++++++|||||||.||+|.++|.++...+......+     ++..+++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~  242 (559)
T PRK08315        168 HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM-----KLTEEDR  242 (559)
T ss_pred             CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc-----CCCCCce
Confidence            11123444443322110     1112234578899999999999999999999999988877766655     7889999


Q ss_pred             EEEecchhhHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHH
Q 007257          220 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  296 (611)
Q Consensus       220 ~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  296 (611)
                      ++...|++|.+++.. .+.++..|+++++...  ++..+++.++++++|+++++|+++..+......             
T Consensus       243 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~-------------  309 (559)
T PRK08315        243 LCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF-------------  309 (559)
T ss_pred             EEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc-------------
Confidence            999999999999876 5567888999885543  899999999999999999999998776542110             


Q ss_pred             HHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCc-eeeccccCCCCCce
Q 007257          297 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPT  375 (611)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~g~~~  375 (611)
                                              +..        .++++|.+++||+++++++.+.+.+.++.+ +++.||+||++.++
T Consensus       310 ------------------------~~~--------~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~  357 (559)
T PRK08315        310 ------------------------ARF--------DLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVS  357 (559)
T ss_pred             ------------------------CCC--------CchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccce
Confidence                                    001        114899999999999999999999888654 99999999999876


Q ss_pred             eeccCCC--ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceE
Q 007257          376 TVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG  452 (611)
Q Consensus       376 ~~~~~~~--~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~  452 (611)
                      +......  .....++|.|+++++++++| ++.+ .+++.|+.|||+|+|+.++.||+++++.+...| .++||+|||+|
T Consensus       358 ~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~  435 (559)
T PRK08315        358 TQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-ETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLA  435 (559)
T ss_pred             eecCcccchhhccCCCCccCCCcEEEEEc-CccC-CcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceE
Confidence            6554332  23357899999999999998 4422 456778899999999999999999999999888 78999999999


Q ss_pred             EEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCC
Q 007257          453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  529 (611)
Q Consensus       453 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~  529 (611)
                      ++++||.+++.||.+|++++ +|.+|++.+||++|.++|+|.+++|++.++.   +.++++|++..+..        .  
T Consensus       436 ~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--  504 (559)
T PRK08315        436 VMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGAT--------L--  504 (559)
T ss_pred             EEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCC--------C--
Confidence            99999999999999999996 8999999999999999999999999997755   36788888765320        0  


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          530 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                            +        .+.+.++++ +.||.|++|..++++++.      |+|++||++|.+|++++...+
T Consensus       505 ------~--------~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GK~~r~~L~~~~~~~~  553 (559)
T PRK08315        505 ------T--------EEDVRDFCR-GKIAHYKIPRYIRFVDEF------PMTVTGKIQKFKMREMMIEEL  553 (559)
T ss_pred             ------C--------HHHHHHHHH-hhcccccCCcEEEEcccC------CCCCCCceeHHHHHHHHHhhh
Confidence                  1        123444443 679999999999998665      999999999999999876644

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-60  Score=525.01  Aligned_cols=492  Identities=18%  Similarity=0.208  Sum_probs=368.0

Q ss_pred             ccccCCCCCceeeeccccC---CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCE
Q 007257            2 SVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI   78 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~---~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   78 (611)
                      +++++||++|+++.   +.   ..+.++.+||+||.+++.++|++|.+. +++||+|+++++|++++++++|||+++|++
T Consensus        43 ~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v  118 (612)
T PRK12476         43 NIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIKAGTI  118 (612)
T ss_pred             HHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHHcCce
Confidence            46789999999886   32   124467899999999999999999986 999999999999999999999999999999


Q ss_pred             EeeC-CCCCC--hhHHHHHHhhcCccEEEEcchhHHHHhccccccc-cCccEEEEecCCcHHHHHHhhhCCCceeeHHHH
Q 007257           79 CVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  154 (611)
Q Consensus        79 ~~~l-~~~~~--~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (611)
                      ++|+ ++.++  .+++.++++.++++++|+++.....+........ .....++.+++...                   
T Consensus       119 ~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------  179 (612)
T PRK12476        119 AVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD-------------------  179 (612)
T ss_pred             eEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc-------------------
Confidence            9999 57776  7899999999999999998776554322111100 01123333322110                   


Q ss_pred             HhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCC-CCCCcEEEEecchhhHHHHH
Q 007257          155 LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLPLAHILDRV  233 (611)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~g~~  233 (611)
                        .. ..........++++++++|||||||.||||.++|+++...+......+     + +..++++++.+|++|.+|+.
T Consensus       180 --~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~~Pl~h~~g~~  251 (612)
T PRK12476        180 --SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVSWLPLYHDMGLS  251 (612)
T ss_pred             --cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEEeCCcccccchH
Confidence              00 001111234678999999999999999999999999987766544444     4 67789999999999999987


Q ss_pred             HHHHHhhcCceEEEecC-----ChHHHHHHHh--hhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007257          234 IEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  306 (611)
Q Consensus       234 ~~~~~l~~G~~~~~~~~-----~~~~~~~~i~--~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (611)
                      ..+.+++.|++++++..     ++..+++.++  ++++|+++.+|.++..+........                     
T Consensus       252 ~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------  310 (612)
T PRK12476        252 MIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA---------------------  310 (612)
T ss_pred             HHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh---------------------
Confidence            76666556666655542     7889999995  5899999999998877754210000                     


Q ss_pred             HhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc---CC---ceeeccccCCCCCceeeccC
Q 007257          307 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTETCGPTTVCFP  380 (611)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~yG~tE~g~~~~~~~~  380 (611)
                                  ....+        .+++++ +++||+++++++.+.|.+.+   |+   .+++.||+||++..++...+
T Consensus       311 ------------~~~~~--------~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~  369 (612)
T PRK12476        311 ------------EGDDI--------DLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAP  369 (612)
T ss_pred             ------------hhcCc--------chhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCC
Confidence                        00000        124889 99999999999999999877   54   48999999999866543322


Q ss_pred             CCc--------------------------cccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCCh
Q 007257          381 DEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP  434 (611)
Q Consensus       381 ~~~--------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~  434 (611)
                      ...                          ...+++|+|+++++++|+| ++. ..+++.|+.|||+++|++++.||++++
T Consensus       370 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~  447 (612)
T PRK12476        370 DAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDT-GAELPDGEVGEIWLHGDNIGRGYWGRP  447 (612)
T ss_pred             CCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCC-CcCCCCCCEEEEEEcCCcccccccCCh
Confidence            110                          0125789999999999998 552 245677889999999999999999999


Q ss_pred             Hhhhhhcc-------------------CCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHh-cCcCcc
Q 007257          435 DLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIE  494 (611)
Q Consensus       435 ~~~~~~~~-------------------~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~-~~p~V~  494 (611)
                      +.+.+.|.                   ++||+|||+|+++ ||+|++.||.||+|++ +|++|+|.+||++|. .||.|.
T Consensus       448 ~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l~~~~p~V~  525 (612)
T PRK12476        448 EETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIEATVAEASPMVR  525 (612)
T ss_pred             HHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHHHHHHHhccccc
Confidence            99998883                   2499999999984 9999999999999997 999999999999997 589999


Q ss_pred             e--EEEEecCCC--CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcce-eeeEEEe
Q 007257          495 D--IWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH-IKGVILD  569 (611)
Q Consensus       495 ~--~~v~~~~~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~-p~~i~~~  569 (611)
                      +  ++|++.++.  +.+++++++.++...               .+..++.+.+.+.+..        .+++ |+.+.++
T Consensus       526 ~~~v~v~~~~~~~~~~~~~~v~~~~~~~~---------------~~~~~l~~~~~~~l~~--------~~~~~p~~v~~v  582 (612)
T PRK12476        526 RGYVTAFTVPAEDNERLVIVAERAAGTSR---------------ADPAPAIDAIRAAVSR--------RHGLAVADVRLV  582 (612)
T ss_pred             CCcEEEEEecCCCcceEEEEEEecCCccc---------------ccHHHHHHHHHHHHHH--------hhCCcceEEEEE
Confidence            9  777876654  488888887653200               0112233333333321        2445 5778888


Q ss_pred             cCCCCCCCCccccccccchHHHHHHHHH
Q 007257          570 PRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       570 ~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +.    +.+|+|++||++|++|+++|.+
T Consensus       583 ~~----~~lP~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        583 PA----GAIPRTTSGKLARRACRAQYLD  606 (612)
T ss_pred             CC----CCcCcCCchHHHHHHHHHHHHc
Confidence            53    2359999999999999998754

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-60  Score=516.59  Aligned_cols=497  Identities=21%  Similarity=0.226  Sum_probs=387.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.    +     +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        19 ~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~   89 (540)
T PRK06164         19 HARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIA   89 (540)
T ss_pred             HHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence            47789999999864    2     68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhH-----HHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHh
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  156 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (611)
                      +++..+.+++.++++.+++++++++++..     ..+........+....++.++......      .......+.++..
T Consensus        90 l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  163 (540)
T PRK06164         90 VNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PAPAPGARVQLFA  163 (540)
T ss_pred             cCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CCCCccccccccc
Confidence            99999999999999999999999986642     111111111123344455544211000      0000001111111


Q ss_pred             cccccCC---cCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHH
Q 007257          157 LGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  233 (611)
Q Consensus       157 ~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~  233 (611)
                      .......   ......++++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|.+|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~  238 (540)
T PRK06164        164 LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLLAALPFCGVFGFS  238 (540)
T ss_pred             ccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEcCCchhHHHHH
Confidence            0000000   01223568899999999999999999999999998887776666     678899999999999999998


Q ss_pred             HHHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 007257          234 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  312 (611)
Q Consensus       234 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (611)
                      ..+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+...                              
T Consensus       239 ~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~------------------------------  288 (540)
T PRK06164        239 TLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG------------------------------  288 (540)
T ss_pred             HHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc------------------------------
Confidence            78888999999988876 89999999999999999999999998875310                              


Q ss_pred             CCCcchHHHHHhhHHHHHHcCCceeEEEEec-CCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC--ccccCcc
Q 007257          313 QREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCMVGTA  389 (611)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G-~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~--~~~~~~~  389 (611)
                                      ....+++++.+.++| .+...+..+++... |+++++.||+||++.+++......  .....+.
T Consensus       289 ----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  351 (540)
T PRK06164        289 ----------------ERADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGG  351 (540)
T ss_pred             ----------------ccCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcceeccC
Confidence                            001124788877665 55666677777665 899999999999998766554322  1222455


Q ss_pred             CCCc-cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccC
Q 007257          390 GPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       390 G~~~-~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      |.+. +++.+++++ ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+
T Consensus       352 g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~  429 (540)
T PRK06164        352 GRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMG  429 (540)
T ss_pred             ccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecC
Confidence            6664 789999998 4333 566788999999999999999999999999988 68999999999999999999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  545 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (611)
                      |+|++ +|++|+|.+||+.|.++|+|.+++|++.+..  ..+++++++.++..        .        +        .
T Consensus       430 ~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~--------~--------~--------~  484 (540)
T PRK06164        430 DSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGAS--------P--------D--------E  484 (540)
T ss_pred             CeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCC--------C--------C--------H
Confidence            99997 8999999999999999999999999986533  47888888765320        0        1        1


Q ss_pred             HHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCcccccc---ccchHHHHHHHHHHH
Q 007257          546 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATL---KKKRNKLLIYYQVEI  599 (611)
Q Consensus       546 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~G---Kv~R~~l~~~~~~~~  599 (611)
                      +++.++++ ..||.+++|+.+.+++..      |+|++|   |++|++|++++++.+
T Consensus       485 ~~l~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~g~~~Ki~r~~L~~~~~~~~  534 (540)
T PRK06164        485 AGLMAACR-EALAGFKVPARVQVVEAF------PVTESANGAKIQKHRLREMAQARL  534 (540)
T ss_pred             HHHHHHHH-hhcccCcCCcEEEEecCC------CCCCCCccccccHHHHHHHHHHhh
Confidence            23444554 679999999999998765      999999   999999999876544

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.7e-60  Score=519.85  Aligned_cols=509  Identities=23%  Similarity=0.298  Sum_probs=380.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+.+||++|+++.    +     +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        29 ~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~   99 (567)
T PLN02479         29 AAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNC   99 (567)
T ss_pred             HHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEE
Confidence            46689999999875    2     58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccc------cccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHH
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL  155 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (611)
                      +++.++.+++.++|+.++++++++++............      .......++.+................+...|.++.
T Consensus       100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (567)
T PLN02479        100 VNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFL  179 (567)
T ss_pred             eccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHH
Confidence            99999999999999999999999988765433221110      001112333333211000000000112334566655


Q ss_pred             hcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHH
Q 007257          156 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE  235 (611)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~  235 (611)
                      ...............+++++++|||||||.||+|.+||.++..........+     ++..++++++..|++|.+++...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~~  254 (567)
T PLN02479        180 ETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPMFHCNGWCFT  254 (567)
T ss_pred             hccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecchhhhhhHHHH
Confidence            4321111111223345678899999999999999999999866554433333     57788999999999999987665


Q ss_pred             HH-HhhcCceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257          236 EY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  314 (611)
Q Consensus       236 ~~-~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (611)
                      +. .+..|.++++...++..+++.++++++|+++++|.++..|........                             
T Consensus       255 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------  305 (567)
T PLN02479        255 WTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET-----------------------------  305 (567)
T ss_pred             HHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc-----------------------------
Confidence            44 466677666655699999999999999999999999998865321100                             


Q ss_pred             CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC----------Ccc
Q 007257          315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD----------EMC  384 (611)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~----------~~~  384 (611)
                                     ...+++++.++++|+++++.+.+.|.+. +.++++.||+||+++.+..+...          ...
T Consensus       306 ---------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~  369 (567)
T PLN02479        306 ---------------ILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQAR  369 (567)
T ss_pred             ---------------cccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccccc
Confidence                           0012488999999999999999999875 89999999999997654432100          011


Q ss_pred             ccCccCCCccCee-EEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEE
Q 007257          385 MVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII  463 (611)
Q Consensus       385 ~~~~~G~~~~~~~-v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~  463 (611)
                      ...+.|.+.++++ +++++.+.+...+.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|++|++|++++.
T Consensus       370 ~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~  449 (567)
T PLN02479        370 LNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIK  449 (567)
T ss_pred             cccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCCccEEEe
Confidence            1135677777775 777772223322222236799999999999999999999999999999999999999999999999


Q ss_pred             eccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHH
Q 007257          464 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  540 (611)
Q Consensus       464 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (611)
                      ||.+|+|++ +|++|+|.+||..|.+||.|.+++|++.++.   +.+++++++..+...                ++   
T Consensus       450 GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------------~~---  509 (567)
T PLN02479        450 DRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDK----------------SD---  509 (567)
T ss_pred             ccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccc----------------cc---
Confidence            999999996 9999999999999999999999999997654   378899887764210                00   


Q ss_pred             HHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       541 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .+...+.|.++++ .+||.|+.|+.+.+. +      +|+|++||++|++|++.+++
T Consensus       510 ~~~~~~~l~~~~~-~~l~~~~~P~~~~~~-~------iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        510 EAALAEDIMKFCR-ERLPAYWVPKSVVFG-P------LPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             hhhhHHHHHHHHH-hhcccccCCceEEec-c------CCCCCccCeeHHHHHHHHHh
Confidence            1122345566664 679999999988763 3      48999999999999876543

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.4e-60  Score=510.82  Aligned_cols=472  Identities=20%  Similarity=0.236  Sum_probs=374.1

Q ss_pred             CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCC
Q 007257            6 YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD   84 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~   84 (611)
                      .+|++|+++.    +     +++||.||.+++.++|.+|.+. |+++|++|+++++|+++++++++||+++|++++|+++
T Consensus        16 ~~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~   86 (529)
T PRK07867         16 EDDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNP   86 (529)
T ss_pred             ccCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecC
Confidence            3789998875    3     6899999999999999999997 8999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccCCc
Q 007257           85 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME  164 (611)
Q Consensus        85 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (611)
                      .++.+++.++++.++++++|+++.....+....    ... .++.++.                ..|.+++.........
T Consensus        87 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~~~~~~l~~~~~~~~~  145 (529)
T PRK07867         87 TRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------PAWADELAAHRDAEPP  145 (529)
T ss_pred             CCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------ccHHHHhcccCCCCCC
Confidence            999999999999999999999987665432211    111 1222211                1233333222112222


Q ss_pred             CCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhhcCc
Q 007257          165 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGA  243 (611)
Q Consensus       165 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~  243 (611)
                      .....++++++++|||||||.||+|+++|.++......+...+     ++..+|++++..|++|.+++.. .+.++..|+
T Consensus       146 ~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  220 (529)
T PRK07867        146 FRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHSNAVMAGWAVALAAGA  220 (529)
T ss_pred             cccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHHHHHHHHHHHHHhcCc
Confidence            3345778999999999999999999999999988877766655     6788999999999999999876 445688899


Q ss_pred             eEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHH
Q 007257          244 SVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL  322 (611)
Q Consensus       244 ~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (611)
                      ++++.+. ++..+++.++++++|++.++|+.+..++......                                      
T Consensus       221 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~--------------------------------------  262 (529)
T PRK07867        221 SIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERP--------------------------------------  262 (529)
T ss_pred             eEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc--------------------------------------
Confidence            9988766 8999999999999999999999988775421100                                      


Q ss_pred             HhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEee
Q 007257          323 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE  402 (611)
Q Consensus       323 ~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~  402 (611)
                             ....++++. ++||+.+++.. ..+.+.+|.++++.||+||+++.......   ...+++|.+.++  +++++
T Consensus       263 -------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~~~g~~~~~--~~i~~  328 (529)
T PRK07867        263 -------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPGALGPLPPG--VAIVD  328 (529)
T ss_pred             -------cccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCCCcCCCCCC--EEEEE
Confidence                   000136774 56888887765 56666779999999999999876553321   234778999998  66666


Q ss_pred             cCCCCCCCCCCCC------------CcEEEE-ecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCe
Q 007257          403 VPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  469 (611)
Q Consensus       403 ~~~~~~~~~~~~~------------~Gel~v-~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~  469 (611)
                       ++.+ .+++.++            .|||++ +|++++.||+++++.+.+.|.+|||+|||+|+++++|.+++.||.||+
T Consensus       329 -~~~~-~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~  406 (529)
T PRK07867        329 -PDTG-TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDW  406 (529)
T ss_pred             -CCCC-CCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCCCcEEEeccccCe
Confidence             3322 3345555            899999 999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 007257          470 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  546 (611)
Q Consensus       470 i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (611)
                      |++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++.++..        .        +..        
T Consensus       407 i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~--------~--------~~~--------  461 (529)
T PRK07867        407 MRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAK--------F--------DPD--------  461 (529)
T ss_pred             EEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCC--------C--------CHH--------
Confidence            997 9999999999999999999999999998765   37888888765420        0        111        


Q ss_pred             HHHHHHHh-CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          547 ELKNAAER-NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       547 ~l~~~~~~-~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      ++++++++ ..|+.+++|..+.++++.      |+|++||++|++|+++...
T Consensus       462 ~l~~~~~~~~~l~~~~~P~~i~~~~~i------P~t~~GKv~r~~L~~~~~~  507 (529)
T PRK07867        462 AFAEFLAAQPDLGPKQWPSYVRVCAEL------PRTATFKVLKRQLSAEGVD  507 (529)
T ss_pred             HHHHHHHhhccCCcccCCeEEEEeecc------CCCCCcceeHHHHHHhcCC
Confidence            22333322 359999999999998765      9999999999999987643

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-60  Score=511.74  Aligned_cols=483  Identities=18%  Similarity=0.185  Sum_probs=374.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   ++.    +++||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus         6 ~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~   78 (501)
T PRK13390          6 HAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITA   78 (501)
T ss_pred             hhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEec
Confidence            57889999999875   211    68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++++++.+++..++++++++++......... .   ......+.+....           .....+++......  
T Consensus        79 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--  141 (501)
T PRK13390         79 INHHLTAPEADYIVGDSGARVLVASAALDGLAAKV-G---ADLPLRLSFGGEI-----------DGFGSFEAALAGAG--  141 (501)
T ss_pred             cccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHh-h---hccceEEEecCcc-----------cccccHHHHhcccC--
Confidence            99999999999999999999999987543222111 0   0011111111110           01112332221110  


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeee--ccHhHHHhhhh----cccccccccCCCCCCcEEEEecchhhHHHHHHH
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSG----VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE  235 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~--s~~~l~~~~~~----~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~  235 (611)
                         ......+++++++|||||||.||+|++  +|.++......    ....+     .+..++++++.+|++|.+++.+.
T Consensus       142 ---~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~~  213 (501)
T PRK13390        142 ---PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRWC  213 (501)
T ss_pred             ---CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHHH
Confidence               001122357999999999999999996  45554432111    11122     57788999999999999988766


Q ss_pred             HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257          236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  314 (611)
Q Consensus       236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (611)
                      ...+..|+++++.+. ++..+++.++++++|++.++|+++..+........                             
T Consensus       214 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------  264 (501)
T PRK13390        214 SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR-----------------------------  264 (501)
T ss_pred             HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc-----------------------------
Confidence            566778999988776 89999999999999999999999988764211100                             


Q ss_pred             CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCcc
Q 007257          315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  394 (611)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~  394 (611)
                            ..        ..++++|.+++||+++++++.+.+.+.+|.++++.||+||+++++...........+++|.|++
T Consensus       265 ------~~--------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  330 (501)
T PRK13390        265 ------TR--------YDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVL  330 (501)
T ss_pred             ------cc--------CChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCccc
Confidence                  00        0113889999999999999999999988999999999999987655443332334578999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc---CCccccCceEEEccCCeEEEEeccCCeEE
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIK  471 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~dG~l~~~GR~~d~i~  471 (611)
                      + ++++++ +++  .+++.|+.|||+++|++++.||+++++.+.+.|.   ++|++|||+|++|+||++++.||.||+|+
T Consensus       331 g-~~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~  406 (501)
T PRK13390        331 G-DLHICD-DDG--NELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMII  406 (501)
T ss_pred             c-eEEEEC-CCC--CCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeecccccee
Confidence            9 688887 444  4567889999999999999999999999998873   68999999999999999999999999999


Q ss_pred             cCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257          472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  548 (611)
Q Consensus       472 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  548 (611)
                      + +|.+|+|.+||++|.+||+|.+++|++.++.   +.+++++++..+..                 ..    +...++|
T Consensus       407 ~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~-----------------~~----~~~~~~l  464 (501)
T PRK13390        407 S-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIR-----------------GS----DELAREL  464 (501)
T ss_pred             E-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCC-----------------cc----hhhHHHH
Confidence            6 8999999999999999999999999998765   37888888765320                 00    1122345


Q ss_pred             HHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHH
Q 007257          549 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  592 (611)
Q Consensus       549 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  592 (611)
                      .++++ .+|+.|++|..++++++.      |+|++||++|++|+
T Consensus       465 ~~~~~-~~l~~~~~P~~~~~~~~i------P~t~~GKi~r~~L~  501 (501)
T PRK13390        465 IDYTR-SRIAHYKAPRSVEFVDEL------PRTPTGKLVKGLLR  501 (501)
T ss_pred             HHHHH-HhcccCCCCcEEEEeccC------CCCCccceehhhcC
Confidence            55664 679999999999999765      99999999999874

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=3.1e-60  Score=511.86  Aligned_cols=487  Identities=22%  Similarity=0.212  Sum_probs=392.6

Q ss_pred             cccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeC
Q 007257            3 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL   82 (611)
Q Consensus         3 a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l   82 (611)
                      ++.+||++|+++.   +      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|+
T Consensus        15 ~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l   85 (508)
T TIGR02262        15 VEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL   85 (508)
T ss_pred             hcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence            5679999999875   3      689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccC
Q 007257           83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  162 (611)
Q Consensus        83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (611)
                      ++.++.+++.++++.++++++++++.....+.+.. ...+....++..+....           ....+.++..... ..
T Consensus        86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~  152 (508)
T TIGR02262        86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAAL-GKSPHLEHRVVVGRPEA-----------GEVQLAELLATES-EQ  152 (508)
T ss_pred             cCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHH-hcCCCccEEEEeCCCCc-----------ccccHHHHhhcCC-Cc
Confidence            99999999999999999999999987665443221 12234445554443211           1223333332221 11


Q ss_pred             CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhh-cccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          163 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       163 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      .......++++++++|||||||.||+|+++|+++...+.. ....+     +++.+|+++...|++|.+++.. ++.++.
T Consensus       153 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~~l~  227 (508)
T TIGR02262       153 FKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFAYGLGNALTFPMS  227 (508)
T ss_pred             cCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHHHHHHHHHHHHHH
Confidence            1223446789999999999999999999999999877655 22233     6788999999999999999865 555788


Q ss_pred             cCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          241 RGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       241 ~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      .|+++++.+.  ++..+++.++++++|.++++|.++..+......                                   
T Consensus       228 ~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~-----------------------------------  272 (508)
T TIGR02262       228 VGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL-----------------------------------  272 (508)
T ss_pred             cCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc-----------------------------------
Confidence            9999988765  799999999999999999999988776431100                                   


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeE
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL  398 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v  398 (611)
                                +...+++++.++++|+++++++.+.|.+.+|+++++.||+||++.++..+.... ...+++|.|.+++++
T Consensus       273 ----------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~G~~~~g~~v  341 (508)
T TIGR02262       273 ----------PAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD-VRYGTSGKPVPGYRL  341 (508)
T ss_pred             ----------cccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccC-CCCCCcCCCCCCcEE
Confidence                      000124899999999999999999999999999999999999998766554332 233788999999999


Q ss_pred             EEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceec
Q 007257          399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV  478 (611)
Q Consensus       399 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v  478 (611)
                      ++++ +++  .+++.++.|||+++|++++.||+++++.+.+.|.++||+|||+++++++|.+++.||.+|++++ +|.++
T Consensus       342 ~i~d-~~~--~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~-~G~~v  417 (508)
T TIGR02262       342 RLVG-DGG--QDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKV-SGIYV  417 (508)
T ss_pred             EEEC-CCC--CCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccccceeee-CCEEE
Confidence            9998 544  4566788999999999999999999999999999999999999999999999999999999997 89999


Q ss_pred             CcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 007257          479 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  555 (611)
Q Consensus       479 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  555 (611)
                      +|.+||+.|.++|+|.++++++.++.   ..+.+++++.+...                 .    .+.+.+++.+.++ .
T Consensus       418 ~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~----~~~~~~~i~~~~~-~  475 (508)
T TIGR02262       418 SPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD-----------------I----DTALETELKEHVK-D  475 (508)
T ss_pred             CHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCc-----------------c----ccccHHHHHHHHH-H
Confidence            99999999999999999999996544   36778888765420                 0    0112344555554 6


Q ss_pred             CCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          556 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       556 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                      .|+.++.|..+.+++++      |+|++||++|++|+++
T Consensus       476 ~l~~~~~p~~i~~~~~i------P~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       476 RLAPYKYPRWIVFVDDL------PKTATGKIQRFKLREG  508 (508)
T ss_pred             hcccCCCCceEEEecCC------CCCCCCcEehhhccCC
Confidence            79999999999988665      9999999999998753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-60  Score=515.49  Aligned_cols=498  Identities=22%  Similarity=0.254  Sum_probs=388.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++++++.   .  .+..+++||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        19 ~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~   93 (542)
T PRK06018         19 AARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHT   93 (542)
T ss_pred             HHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeec
Confidence            57899999999854   1  233578999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.+++++++++.+....+.+... ..+....++...+....    ..........|.++..... .
T Consensus        94 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~  167 (542)
T PRK06018         94 VNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHM----PQTTLKNAVAYEEWIAEAD-G  167 (542)
T ss_pred             cccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHh-hCCCccEEEEecccccc----cccCccccccHHHHhccCC-c
Confidence            9999999999999999999999999876655433221 12334445544332110    0001112334555544332 1


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHH-Hhh-hhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF  239 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l  239 (611)
                      ........++++++++|||||||.||+|.+||+++. ... ......+     ++..+|+++...|++|.+++...+.++
T Consensus       168 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~~~~~~~~~~~  242 (542)
T PRK06018        168 DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHANSWGIAFSAP  242 (542)
T ss_pred             ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHHhhhHHHHhhh
Confidence            222234567889999999999999999999999743 222 2222223     577889999999999999887777788


Q ss_pred             hcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          240 RRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       240 ~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      ..|+++++...  ++..+++.++++++|++.++|+++..+.+......                                
T Consensus       243 ~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------------------  290 (542)
T PRK06018        243 SMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG--------------------------------  290 (542)
T ss_pred             hcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC--------------------------------
Confidence            99999988653  88999999999999999999999998865322110                                


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC----------ccccC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----------MCMVG  387 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~----------~~~~~  387 (611)
                                   ..++++|.++++|+++++++.++|++ ++.++++.||+||++.+.+.+....          .....
T Consensus       291 -------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (542)
T PRK06018        291 -------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQ  356 (542)
T ss_pred             -------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhccc
Confidence                         01148999999999999999999999 8999999999999998765442111          01125


Q ss_pred             ccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEecc
Q 007257          388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       388 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      +.|.|.+++++++++ +++...+.+.+..|||+++|+.++.||+++.   ...+ .+|||+|||+++++++|++++.||.
T Consensus       357 ~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~  432 (542)
T PRK06018        357 KQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYMRITDRS  432 (542)
T ss_pred             cCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCCccEEEEecC
Confidence            789999999999998 6665555444467999999999999999842   2233 5799999999999999999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  543 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (611)
                      +|+|++ +|.++++.+||+.+.+||+|.+|+|++.++.   +.+.++|++.++..        .        +       
T Consensus       433 ~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~-------  488 (542)
T PRK06018        433 KDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET--------A--------T-------  488 (542)
T ss_pred             CCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC--------C--------C-------
Confidence            999996 9999999999999999999999999997754   36778887765320        0        1       


Q ss_pred             HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                       .+.+.++++ ..++.+.+|+.+.++++.      |+|++||++|++|+++|.+
T Consensus       489 -~~~l~~~~~-~~l~~~~~P~~i~~v~~i------P~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        489 -REEILKYMD-GKIAKWWMPDDVAFVDAI------PHTATGKILKTALREQFKD  534 (542)
T ss_pred             -HHHHHHHHH-hhCccccCCcEEEEeccC------CCCCcchhhHHHHHHHHhc
Confidence             123444443 679999999999999765      9999999999999998865

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.3e-60  Score=514.15  Aligned_cols=474  Identities=20%  Similarity=0.195  Sum_probs=370.3

Q ss_pred             cCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCC
Q 007257            5 KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLY   83 (611)
Q Consensus         5 ~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~   83 (611)
                      .+|+++|+++.    +     ..+||.||.+++.++|..|.+.|+ .+||+|+++++|+++++++++||+++|++++|++
T Consensus        13 ~~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~   83 (540)
T PRK13388         13 AGDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLN   83 (540)
T ss_pred             ccCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEec
Confidence            47999999875    3     589999999999999999999999 7999999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccCC
Q 007257           84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM  163 (611)
Q Consensus        84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (611)
                      |.++.+++.++++.+++++++++++....+....   .+... ++.++..                .+.++..... ...
T Consensus        84 p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~~~~~~~~~-~~~  142 (540)
T PRK13388         84 TTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AYAELVAAAG-ALT  142 (540)
T ss_pred             ccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hhhhhhcccc-CcC
Confidence            9999999999999999999999877655442211   12222 2222211                1222222111 111


Q ss_pred             cCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHH-HHhhcC
Q 007257          164 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE-YFFRRG  242 (611)
Q Consensus       164 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~-~~l~~G  242 (611)
                      ......++++++++|||||||.||+|.++|.++...+......+     ++..+|++++.+|++|.+++...+ .++..|
T Consensus       143 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G  217 (540)
T PRK13388        143 PHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNAVMAGWAPAVASG  217 (540)
T ss_pred             CCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcchHHHHHHHHHcC
Confidence            12235679999999999999999999999999988777666655     788899999999999998887644 468899


Q ss_pred             ceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 007257          243 ASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  321 (611)
Q Consensus       243 ~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (611)
                      +++++.+. ++..+++.++++++|++..+|..+..+......                                  +  .
T Consensus       218 ~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~----------------------------------~--~  261 (540)
T PRK13388        218 AAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER----------------------------------P--D  261 (540)
T ss_pred             cEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC----------------------------------c--c
Confidence            99988765 899999999999999999999988776531100                                  0  0


Q ss_pred             HHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE--
Q 007257          322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR--  399 (611)
Q Consensus       322 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~--  399 (611)
                               ...++++.+  .|+++++.....|.+.+++++++.||+||++.++.....   ...+++|.|++++++.  
T Consensus       262 ---------~~~~~l~~~--~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~---~~~~~vG~p~~g~~i~~~  327 (540)
T PRK13388        262 ---------DADNPLRVA--FGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREPG---TPPGSIGRGAPGVAIYNP  327 (540)
T ss_pred             ---------ccccceEEE--ECCCCCHHHHHHHHHHhCCceecccccccccceeecCCC---CCCCCCCCCCCCcEEEcC
Confidence                     001256643  366778888888888889999999999999876654321   2347899999986643  


Q ss_pred             ---------EeecCCCCCCCCCCCCCcEEEEe-cCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCe
Q 007257          400 ---------LEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  469 (611)
Q Consensus       400 ---------i~~~~~~~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~  469 (611)
                               ++| ++ +....+.++.|||+++ |++++.||+++++.+.+.|.+|||+|||+|++++||++++.||.+|+
T Consensus       328 ~~~~~~~~~~~d-~~-g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~l~i~GR~~d~  405 (540)
T PRK13388        328 ETLTECAVARFD-AH-GALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADW  405 (540)
T ss_pred             CCCccccceecc-Cc-cccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCcEEEeccCCce
Confidence                     111 11 1111234568999998 99999999999999999998999999999999999999999999999


Q ss_pred             EEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 007257          470 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  546 (611)
Q Consensus       470 i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (611)
                      |++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.+++++++.++..        .        +.        +
T Consensus       406 i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~--------~--------~~--------~  460 (540)
T PRK13388        406 MRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGAT--------F--------DP--------D  460 (540)
T ss_pred             EEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCc--------C--------CH--------H
Confidence            997 9999999999999999999999999997754   36777777765320        0        11        1


Q ss_pred             HHHHHHHh-CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          547 ELKNAAER-NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       547 ~l~~~~~~-~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                      .+++++.. ..|+.+++|..++++++.      |+|++||++|++|+++..
T Consensus       461 ~l~~~l~~~~~l~~~~~P~~~~~v~~i------P~t~~GKv~R~~L~~~~~  505 (540)
T PRK13388        461 AFAAFLAAQPDLGTKAWPRYVRIAADL------PSTATNKVLKRELIAQGW  505 (540)
T ss_pred             HHHHHHHhhccCCcccCCcEEEEeccC------CCCCcceeeHHhHHHhcc
Confidence            22233321 369999999999998665      999999999999988653

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.8e-60  Score=513.52  Aligned_cols=476  Identities=18%  Similarity=0.209  Sum_probs=382.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+.+||++|+.+.   +      +.+||.||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus         9 ~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~   79 (502)
T TIGR01734         9 FAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIP   79 (502)
T ss_pred             HHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeC
Confidence            57789999998875   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++..+++++++++........        .. ++.++..                  ..+.... ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~~------------------~~~~~~~-~~  131 (502)
T TIGR01734        80 VDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSAL------------------EQAETSG-GP  131 (502)
T ss_pred             CCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchHh------------------hhhhhhc-CC
Confidence            9999999999999999999999998764322211        11 1111110                  0111111 01


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|.++...+......+     ....++++++..|++|..++..++.++..
T Consensus       132 ~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~l~~  206 (502)
T TIGR01734       132 VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVMDLYPCLAS  206 (502)
T ss_pred             ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHHHHHHHHHC
Confidence            1112234678999999999999999999999999998877665554     67888999999999999988888888999


Q ss_pred             CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      |+++++.+.    ++..+++.+.++++|.+.++|.++..+......                                  
T Consensus       207 G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~----------------------------------  252 (502)
T TIGR01734       207 GGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF----------------------------------  252 (502)
T ss_pred             CCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc----------------------------------
Confidence            999998864    788999999999999999999998766431100                                  


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCC----CccccCccCCC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMCMVGTAGPV  392 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~----~~~~~~~~G~~  392 (611)
                                 ....+++++.++++|++++++..+.+.+.+ ++++++.||+||+++........    ......++|.+
T Consensus       253 -----------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~  321 (502)
T TIGR01734       253 -----------NQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFA  321 (502)
T ss_pred             -----------ccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccc
Confidence                       001125899999999999999999998887 78999999999998654433211    12223578999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc----CCccccCceEEEccCCeEEEEeccCC
Q 007257          393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVVKIIDRKKN  468 (611)
Q Consensus       393 ~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~dG~l~~~GR~~d  468 (611)
                      .+++++++++ +++  .+++.++.|||+++|+.++.||+++++.+.+.|.    .+||+|||+|++|++ ++++.||.+|
T Consensus       322 ~~~~~~~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d  397 (502)
T TIGR01734       322 KPDMNLFIMD-EEG--EPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDF  397 (502)
T ss_pred             cCCCEEEEEC-CCC--CCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccC
Confidence            9999999998 554  4556778999999999999999999999988772    259999999999966 9999999999


Q ss_pred             eEEcCCceecCcHHHHHHHhcCcCcceEEEEecC--C--CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          469 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--L--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       469 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      +|++ +|++|+|.+||+.+.++|+|.++++++..  +  .+.++++|++......                ...    .+
T Consensus       398 ~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~----------------~~~----~~  456 (502)
T TIGR01734       398 QIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE----------------KEF----QL  456 (502)
T ss_pred             eEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc----------------cch----hh
Confidence            9997 99999999999999999999999999843  1  1478888888764210                111    22


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                      .+++++.++ +.|+.+++|+.+++++..      |+|++||++|++|++++.
T Consensus       457 ~~~i~~~~~-~~l~~~~~P~~~~~v~~l------P~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       457 TKAIKKELK-KSLPAYMIPRKFIYRDQL------PLTANGKIDRKALAEEVN  501 (502)
T ss_pred             HHHHHHHHh-hhChhhcCCcEEEEcccc------CCCCCCcccHHHHHHhhc
Confidence            234555554 679999999999998765      999999999999999764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=8.8e-59  Score=528.51  Aligned_cols=555  Identities=20%  Similarity=0.295  Sum_probs=436.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++|+++|+...   . ..++++++||+|+.+++.++|.+|.+.|+++||+|+|+++|+++|+++.+||+++|++++|
T Consensus       436 ~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VP  511 (1452)
T PTZ00297        436 SVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLP  511 (1452)
T ss_pred             HHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence            47789999998643   1 1345688999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHH-HHhhhCCCceeeHHHHHhcccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK-EMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      +++  +.+++.++++.++++++|++.+....+.....   +.++.|+++++...... ......+....+|+++...+..
T Consensus       512 ly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~  586 (1452)
T PTZ00297        512 LVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRL  586 (1452)
T ss_pred             CCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCcc
Confidence            975  46799999999999999999887766544321   36788888864211000 0000112345679998876632


Q ss_pred             cCC-cCCCCCCCCeEEEEE---ecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHH
Q 007257          161 NEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE  236 (611)
Q Consensus       161 ~~~-~~~~~~~~~~a~i~~---TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~  236 (611)
                      ... ......++|++.|+|   ||||||.||||++||+|++..+..+.....  ......+|++++.+|++|+++....+
T Consensus       587 ~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~~D~~Ls~LPLaHI~er~~~~  664 (1452)
T PTZ00297        587 CPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFKKHLMVHFTPFAMLFNRVFVL  664 (1452)
T ss_pred             cCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCCCCEEEEechHHHHHHHHHHH
Confidence            111 122347889999996   999999999999999999998887543210  01245789999999999999977777


Q ss_pred             HHhhcCceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          237 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       237 ~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      .++..|+++.+.  ++..+++.|++++||+++++|.+++++.+.+.+.....+.+++++++.+...+...+..+   ...
T Consensus       665 ~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g---~~~  739 (1452)
T PTZ00297        665 GLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIH---RRD  739 (1452)
T ss_pred             HHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcC---CCC
Confidence            788999998753  789999999999999999999999999988887777777889999988877766555433   345


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecC--CCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCcc
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  394 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~--~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~  394 (611)
                      .++++.+.+++++..+|+++|.+++||+  +++..+..      ++++..+||+||..   +.+.++...   ..|.|+|
T Consensus       740 ~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~~~~---~~G~Plp  807 (1452)
T PTZ00297        740 SSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEGVFC---VDGTPAP  807 (1452)
T ss_pred             cHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCCCcc---cCCeecC
Confidence            6789999999999999999999999984  55533322      67789999999943   333333322   2399999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCC
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  474 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~  474 (611)
                      ++++++.++++.+..    +..|||++++       +++++.|++. .+||+         +||+|+|.||.+|+|+.++
T Consensus       808 gvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~dG~L~IidRkKdlikls~  866 (1452)
T PTZ00297        808 SLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWK---------RDRTLRLLGPPLGILLPVA  866 (1452)
T ss_pred             ceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCc---------cCCeEEEEeccccceECCC
Confidence            999999985443322    2359999964       5889999874 36775         6999999999999999999


Q ss_pred             ceecCcHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHH-HHHHHCCCCC--------cHHHHhccHHHHHHHH
Q 007257          475 GEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTK-KWAYSNGHAG--------SFLELCSLVQLQNYIL  545 (611)
Q Consensus       475 G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~  545 (611)
                      |++|+|..||+.+.++|.|.+++|+|.+. +.++|+|+++.+... .|...++...        ...+++.+  ..+.+.
T Consensus       867 GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~--~~~~v~  943 (1452)
T PTZ00297        867 YEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAY--ASSLLT  943 (1452)
T ss_pred             CcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHh--HHHHHH
Confidence            99999999999999999999999999874 459999999999988 8988876521        33444321  122344


Q ss_pred             HHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhcC
Q 007257          546 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP  608 (611)
Q Consensus       546 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~~~  608 (611)
                      +.+++..+.+.+..+.+++.+.+++++|++++.-.||+.|++|..+.+.|+++|++||++.++
T Consensus       944 ~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~~~~ 1006 (1452)
T PTZ00297        944 ADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVET 1006 (1452)
T ss_pred             HHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhccccc
Confidence            444444444558889999999999999999999999999999999999999999999996544

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=4.4e-60  Score=514.35  Aligned_cols=501  Identities=24%  Similarity=0.278  Sum_probs=386.0

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        30 ~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~  100 (541)
T TIGR03205        30 AAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVH  100 (541)
T ss_pred             HHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEe
Confidence            46789999999875   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhH--HHHhccccccccCccEEEEecCCcHHH-HH--HhhhCCCceeeHHHHHh
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRLRVMVCFTSLTAEQ-KE--MAVQTGIKPYSWDEFLH  156 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~  156 (611)
                      ++|.++.+++.++++.++++++++++...  .........  .....+++.+...... ..  ..........+++++..
T Consensus       101 l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (541)
T TIGR03205       101 LSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK  178 (541)
T ss_pred             cCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence            99999999999999999999999986321  111111110  1122333333211000 00  00001122345555554


Q ss_pred             cccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhccccccc-ccCCCCCCcEEEEecchhhHHHHHH-
Q 007257          157 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDKMTVDDVYLSFLPLAHILDRVI-  234 (611)
Q Consensus       157 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~g~~~-  234 (611)
                      .. ..........++++++++|||||||.||+|.++|.++....... ..+.. ........+++++..|++|.+++.. 
T Consensus       179 ~~-~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~  256 (541)
T TIGR03205       179 GA-AAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTVI  256 (541)
T ss_pred             cC-CCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHHH
Confidence            32 11112234567899999999999999999999999987654322 11100 0112334578999999999988776 


Q ss_pred             HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCC
Q 007257          235 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  313 (611)
Q Consensus       235 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (611)
                      ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+...                               
T Consensus       257 ~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------------  305 (541)
T TIGR03205       257 LLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-------------------------------  305 (541)
T ss_pred             HHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc-------------------------------
Confidence            5557888999888766 99999999999999999999999987754110                               


Q ss_pred             CCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc
Q 007257          314 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  393 (611)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~  393 (611)
                            ..        ...+++++.+++||+++++++.+++.+.++.++++.||+||++..+..........++++|.++
T Consensus       306 ------~~--------~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~  371 (541)
T TIGR03205       306 ------LE--------KRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLML  371 (541)
T ss_pred             ------cc--------ccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCCCcceec
Confidence                  00        0011489999999999999999999988899999999999999877665443333457899999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcC
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  473 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~  473 (611)
                      +++.+++.+. ++...+++.++.|||+++|++++.||+++++.+.+.|.++||+|||+++++++|++++.||.+|+|++ 
T Consensus       372 ~~~~~~v~~~-d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~-  449 (541)
T TIGR03205       372 PGIELDVVSL-DDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIIS-  449 (541)
T ss_pred             cCceeEEEec-CCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEEEccccCeEEE-
Confidence            9999998763 33335667788999999999999999999999999999999999999999999999999999999996 


Q ss_pred             CceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 007257          474 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  550 (611)
Q Consensus       474 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  550 (611)
                      +|++|+|.+||+.|.+||+|.+++|++.++.   +.+++++++.++..         ..      +        .+++.+
T Consensus       450 ~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------~~------~--------~~~l~~  506 (541)
T TIGR03205       450 GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK---------PF------S--------LDELRA  506 (541)
T ss_pred             CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCC---------cC------C--------HHHHHH
Confidence            9999999999999999999999999987654   46888888765320         00      1        123444


Q ss_pred             HHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHH
Q 007257          551 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  592 (611)
Q Consensus       551 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  592 (611)
                      +++ +.|+.|++|+.|+++++.      |+|++||++|++|+
T Consensus       507 ~~~-~~l~~~~~P~~i~~~~~i------P~t~~gK~~r~~l~  541 (541)
T TIGR03205       507 FLA-GKLGKHELPVAVEFVDEL------PRTPVGKLSRHELR  541 (541)
T ss_pred             HHH-hhcccccCCcEEEEeccC------CCCcccceeHhhcC
Confidence            443 679999999999999765      99999999999873

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=4.4e-61  Score=611.08  Aligned_cols=471  Identities=19%  Similarity=0.239  Sum_probs=392.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||+++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus      3104 ~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vp 3174 (3956)
T PRK12467       3104 QVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVP 3174 (3956)
T ss_pred             HHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeec
Confidence            57889999999987   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++.+++++++++......+...      ....++.++...                     ......
T Consensus      3175 ld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~---------------------~~~~~~ 3227 (3956)
T PRK12467       3175 LDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD---------------------LNGYSE 3227 (3956)
T ss_pred             CCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh---------------------hcccCC
Confidence            99999999999999999999999987654433111      011122222111                     001111


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||||+++|+++.+.+......+     +++.+|++++..|++|..+...++.++..
T Consensus      3228 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~L~~ 3302 (3956)
T PRK12467       3228 NNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDGAQERFLWTLIC 3302 (3956)
T ss_pred             CCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhHHHHHHHHHHhC
Confidence            1222345789999999999999999999999999999998877766     78899999999999999998888899999


Q ss_pred             CceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          242 GASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       242 G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      |+++++.+.   ++..+++.|+++++|++.++|++++.+.+...                                    
T Consensus      3303 G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------------------ 3346 (3956)
T PRK12467       3303 GGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------------------------------------ 3346 (3956)
T ss_pred             CCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc------------------------------------
Confidence            999999874   78999999999999999999999988764210                                    


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCc----cccCccCCCc
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM----CMVGTAGPVS  393 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~----~~~~~~G~~~  393 (611)
                                 ...+++||.+++||+++++++.+.|.+.+ ++.++|.||+||++..++.......    ....++|+|+
T Consensus      3347 -----------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~ 3415 (3956)
T PRK12467       3347 -----------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPV 3415 (3956)
T ss_pred             -----------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCcccc
Confidence                       01124899999999999999999998876 6789999999999987665432211    1236799999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cC-------CccccCceEEEccCCeEEEEec
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-------GWFHTGDIGQILPNGVVKIIDR  465 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~-------g~~~TGD~~~~~~dG~l~~~GR  465 (611)
                      ++++++|+| +++  .+++.|+.|||+|+|++++.||+++++.|+++| .+       +||+|||+|++++||.+++.||
T Consensus      3416 ~~~~~~v~d-~~~--~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR 3492 (3956)
T PRK12467       3416 AGRSIYVLD-GQL--NPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGR 3492 (3956)
T ss_pred             CCCEEEEEC-CCC--CCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEecc
Confidence            999999998 544  567788999999999999999999999999999 44       3699999999999999999999


Q ss_pred             cCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257          466 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  543 (611)
Q Consensus       466 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (611)
                      .||+||+ +|++|+|.|||++|.++|+|.+|+|++..+  .+.++|++++..+..                        .
T Consensus      3493 ~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~------------------------~ 3547 (3956)
T PRK12467       3493 IDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQG------------------------D 3547 (3956)
T ss_pred             ccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCc------------------------c
Confidence            9999998 999999999999999999999999997643  358999999875310                        0


Q ss_pred             HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHH
Q 007257          544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  595 (611)
Q Consensus       544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  595 (611)
                      ..+.++++++ ..||.|++|..|++++..      |+|++||++|++|.+.+
T Consensus      3548 ~~~~l~~~l~-~~Lp~y~vP~~~~~l~~l------P~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3548 WRETLRDHLA-ASLPDYMVPAQLLVLAAM------PLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             cHHHHHHHHh-ccCChhhCCCeeeeeccC------CCCCCCccchhhcCCCC
Confidence            1234555554 789999999999988664      99999999999998754

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.4e-60  Score=504.71  Aligned_cols=453  Identities=26%  Similarity=0.291  Sum_probs=369.3

Q ss_pred             cccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeC
Q 007257            3 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL   82 (611)
Q Consensus         3 a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l   82 (611)
                      +.+.++++|+++.    +     +++||.||.++++++|..|.     ++|+|+++++|++++++++|||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            4567899998875    3     79999999999999999996     46999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccC
Q 007257           83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  162 (611)
Q Consensus        83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (611)
                      ++.++.+++.+++++++++++++++....   .    ..+...  +...                ...|           
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~---~----~~~~~~--~~~~----------------~~~~-----------  119 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDDP---A----GLPHVP--VRLH----------------ARSW-----------  119 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCccc---c----ccccee--eecc----------------cccc-----------
Confidence            99999999999999999999999763110   0    000000  0000                0000           


Q ss_pred             CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhhc
Q 007257          163 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRR  241 (611)
Q Consensus       163 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~  241 (611)
                      .......++++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|.+|+.. .+.++..
T Consensus       120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  194 (471)
T PRK07787        120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRI  194 (471)
T ss_pred             ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhc
Confidence            011124578999999999999999999999999998887766655     6778899999999999999886 5667999


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++.+. ++..+++.++ +++|+++++|.++..+.+....                                     
T Consensus       195 G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-------------------------------------  236 (471)
T PRK07787        195 GNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-------------------------------------  236 (471)
T ss_pred             CCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-------------------------------------
Confidence            999988866 9999999999 9999999999999887642100                                     


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  400 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  400 (611)
                               ...++++|.+++||+++++++.++|.+.++.++++.||+||++...+.... ....++++|.|+++++++|
T Consensus       237 ---------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i  306 (471)
T PRK07787        237 ---------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRL  306 (471)
T ss_pred             ---------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEE
Confidence                     001248999999999999999999999889999999999999876544433 2333478999999999999


Q ss_pred             eecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEecc-CCeEEcCCceec
Q 007257          401 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYV  478 (611)
Q Consensus       401 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~-~d~i~~~~G~~v  478 (611)
                      ++ +++...+.+.++.|||+++|++++.||+++++.+.+.| .+|||+|||+|++++||++++.||. ||+++. +|++|
T Consensus       307 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v  384 (471)
T PRK07787        307 VD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRI  384 (471)
T ss_pred             EC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEE
Confidence            98 55543332223479999999999999999999999988 5899999999999999999999996 899996 99999


Q ss_pred             CcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 007257          479 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  555 (611)
Q Consensus       479 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  555 (611)
                      +|.+||+.|.++|.|.+++|++.++.   +.+++++++.++.                  +.        +++.++++ +
T Consensus       385 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~~--------~~l~~~l~-~  437 (471)
T PRK07787        385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV------------------AA--------DELIDFVA-Q  437 (471)
T ss_pred             CHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC------------------CH--------HHHHHHHH-h
Confidence            99999999999999999999997754   4788888874321                  11        22344443 6


Q ss_pred             CCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          556 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       556 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      .|+.+++|..+++++..      |+|++||++|++|++
T Consensus       438 ~l~~~~~P~~i~~~~~i------P~~~~GKi~r~~L~~  469 (471)
T PRK07787        438 QLSVHKRPREVRFVDAL------PRNAMGKVLKKQLLS  469 (471)
T ss_pred             hcccccCCcEEEEeccC------CCCCCccccHHHhcc
Confidence            79999999999998665      999999999999975

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-59  Score=513.41  Aligned_cols=501  Identities=22%  Similarity=0.283  Sum_probs=386.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      ..+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        32 ~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~  102 (557)
T PRK07059         32 SFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVN  102 (557)
T ss_pred             HHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEec
Confidence            46789999999986   3      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcH-HHHH-------------HhhhCCCc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA-EQKE-------------MAVQTGIK  147 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~-------------~~~~~~~~  147 (611)
                      ++|.++.+++.++++.++++++++++.....+......  .....+++...... ....             ........
T Consensus       103 v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (557)
T PRK07059        103 VNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPG  180 (557)
T ss_pred             cCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEecccccccccccccccccccccccccccCCCC
Confidence            99999999999999999999999987654433221111  11222222211000 0000             00000112


Q ss_pred             eeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhccccccc-ccCC-CCCCcEEEEecc
Q 007257          148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDK-MTVDDVYLSFLP  225 (611)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~p  225 (611)
                      ...++++...............++++++++|||||||.||+|.++|.++...+......+.. .... ......+++.+|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  260 (557)
T PRK07059        181 HVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALP  260 (557)
T ss_pred             cccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCC
Confidence            23455554433222223345578899999999999999999999999998765443322210 0001 112457788999


Q ss_pred             hhhHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007257          226 LAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  302 (611)
Q Consensus       226 ~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  302 (611)
                      ++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.....                    
T Consensus       261 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--------------------  320 (557)
T PRK07059        261 LYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD--------------------  320 (557)
T ss_pred             cHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC--------------------
Confidence            999988764 5567778888777654  88899999999999999999999988764211                    


Q ss_pred             HHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC
Q 007257          303 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  382 (611)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~  382 (611)
                                       ....+        +++++.++.||+++++.+.+.|.+.+++++++.||+||++.++.......
T Consensus       321 -----------------~~~~~--------~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  375 (557)
T PRK07059        321 -----------------FDKLD--------FSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDA  375 (557)
T ss_pred             -----------------cCcCC--------chhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCC
Confidence                             00011        13889999999999999999999888999999999999998766554443


Q ss_pred             ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEE
Q 007257          383 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  461 (611)
Q Consensus       383 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~  461 (611)
                      ...++++|.|++++++++++ +++  .+++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|||++++++||.++
T Consensus       376 ~~~~~~vG~p~~g~~v~i~d-~~~--~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~  452 (557)
T PRK07059        376 TEFSGTIGLPLPSTEVSIRD-DDG--NDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTK  452 (557)
T ss_pred             CCcCCcccCccCCcEEEEEC-CCC--CCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEE
Confidence            44457899999999999998 554  456778899999999999999999999999888 68999999999999999999


Q ss_pred             EEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccH
Q 007257          462 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  538 (611)
Q Consensus       462 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (611)
                      +.||.+|++++ +|++|+|.+||++|.++|+|.+++|++.++.   +.++++++..+...                 +. 
T Consensus       453 ~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~-----------------~~-  513 (557)
T PRK07059        453 IVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPAL-----------------TE-  513 (557)
T ss_pred             EecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCC-----------------CH-
Confidence            99999999997 8999999999999999999999999986654   36777777554210                 11 


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          539 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       539 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                             +++.+++. +.|+.+++|..+.+++..      |+|++||++|+.|+++
T Consensus       514 -------~~l~~~~~-~~l~~~~~P~~i~~v~~~------P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        514 -------EDVKAFCK-ERLTNYKRPKFVEFRTEL------PKTNVGKILRRELRDG  555 (557)
T ss_pred             -------HHHHHHHH-HhcccccCCcEEEEeccC------CCCcccceeHHHHHhh
Confidence                   23444443 578999999999998665      9999999999999764

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.1e-60  Score=516.35  Aligned_cols=501  Identities=23%  Similarity=0.291  Sum_probs=383.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+++.    +     +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        33 ~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp  103 (563)
T PRK06710         33 MASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQ  103 (563)
T ss_pred             HHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEec
Confidence            36789999999886    3     68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcH--H-HH-----------HHhh--hCC
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--E-QK-----------EMAV--QTG  145 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~-----------~~~~--~~~  145 (611)
                      ++|.++.+++.++++.++++++++++........... . .....++.......  . ..           ....  ...
T Consensus       104 i~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (563)
T PRK06710        104 TNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQS-A-TKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSES  181 (563)
T ss_pred             cCcccCHHHHHHHHhccCCeEEEEeccchhhhhccch-h-hccceeEEeccccccccccccccchhhccccccccccccc
Confidence            9999999999999999999999998765443321111 0 11112221110000  0 00           0000  000


Q ss_pred             CceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCC-CCCcEEEEec
Q 007257          146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFL  224 (611)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~  224 (611)
                      .....|..+.... ..........++++++++|||||||.||+|.++|.++..........+    ... ...+++++..
T Consensus       182 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~~l~~~  256 (563)
T PRK06710        182 ETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNCKEGEEVVLGVL  256 (563)
T ss_pred             chhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCCCCCCceEEEeC
Confidence            0001122221111 011111122457899999999999999999999999875543222211    022 3456889999


Q ss_pred             chhhHHHHHH-HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007257          225 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  302 (611)
Q Consensus       225 p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  302 (611)
                      |++|.+++.. +..++..|+++++.+. ++..+++.++++++|++.++|+++..+.....                    
T Consensus       257 p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------  316 (563)
T PRK06710        257 PFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL--------------------  316 (563)
T ss_pred             chHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc--------------------
Confidence            9999998865 4457889999988766 89999999999999999999999988754210                    


Q ss_pred             HHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC
Q 007257          303 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  382 (611)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~  382 (611)
                                       ....+        ++++|.+++||+++++++.+++.+.++.++++.||+||++.++.......
T Consensus       317 -----------------~~~~~--------~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  371 (563)
T PRK06710        317 -----------------LKEYD--------ISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWE  371 (563)
T ss_pred             -----------------cccCC--------hhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcccc
Confidence                             00001        13889999999999999999999988999999999999998655443323


Q ss_pred             ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEE
Q 007257          383 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  462 (611)
Q Consensus       383 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~  462 (611)
                      ...++++|.+.++..+++++ +++ ..+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++
T Consensus       372 ~~~~~~~G~~~~~~~~~i~~-~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~  449 (563)
T PRK06710        372 KRVPGSIGVPWPDTEAMIMS-LET-GEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYV  449 (563)
T ss_pred             cccCCccCCCCCCCeEEEEE-CCC-CccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcCCCcEEE
Confidence            33347899999999999998 333 3567778899999999999999999999999989999999999999999999999


Q ss_pred             EeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHH
Q 007257          463 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  539 (611)
Q Consensus       463 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (611)
                      .||.||+|++ +|.+|+|.+||+.|.++|.|.+++|++.++.   +.+++++++.++..        .        +   
T Consensus       450 ~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------~---  509 (563)
T PRK06710        450 KDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTE--------C--------S---  509 (563)
T ss_pred             eeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCC--------C--------C---
Confidence            9999999997 8999999999999999999999999997654   47888888765420        0        1   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       540 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                           .+++.++++ +.|+.+++|..+.++++.      |+|++||++|++|+++++.
T Consensus       510 -----~~~l~~~~~-~~l~~~~~P~~~~~v~~i------P~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        510 -----EEELNQFAR-KYLAAYKVPKVYEFRDEL------PKTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             -----HHHHHHHHH-HhcccccCCcEEEEcccC------CCCccchhhHHHHHHHHhh
Confidence                 123444443 679999999999988765      9999999999999988754

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=4.7e-60  Score=499.70  Aligned_cols=427  Identities=20%  Similarity=0.230  Sum_probs=346.1

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEE
Q 007257           26 VWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF  104 (611)
Q Consensus        26 ~~~Ty~ql~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li  104 (611)
                      .-|.|+||.+++.++|.+|.+.|+ .+|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++
T Consensus        18 ~~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i   97 (452)
T PRK07445         18 IGYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW   97 (452)
T ss_pred             eecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence            457899999999999999999988 5799999999999999999999999999999999999999999999999999999


Q ss_pred             EcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCC
Q 007257          105 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSG  184 (611)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG  184 (611)
                      ++++.....                ....                .         .   ......++++++++|||||||
T Consensus        98 ~~~~~~~~~----------------~~~~----------------~---------~---~~~~~~~~~~~~i~~TSGTTG  133 (452)
T PRK07445         98 GLDQLKLSH----------------PPPL----------------P---------S---QGILPNLETGWIMIPTGGSSG  133 (452)
T ss_pred             ecCcccccc----------------CCCC----------------C---------c---cccCCCCCCcEEEEeCCCCCC
Confidence            876422100                0000                0         0   001235688999999999999


Q ss_pred             CCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecC-ChHHHHHHHhhhc
Q 007257          185 DPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELK  263 (611)
Q Consensus       185 ~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~  263 (611)
                      .||+|++||+++...+......+     ++.. ++.++.+|++|.+|+...+.++..|+++++.+. ...........++
T Consensus       134 ~PKgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~  207 (452)
T PRK07445        134 QIRFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPS  207 (452)
T ss_pred             CCcEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcC
Confidence            99999999999988777655544     4443 467889999999999878888999999998874 2222233445788


Q ss_pred             CeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEec
Q 007257          264 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  343 (611)
Q Consensus       264 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G  343 (611)
                      +|+++++|++++.+.+...                                                ..++++|.+++||
T Consensus       208 ~t~~~~vP~~l~~l~~~~~------------------------------------------------~~l~~l~~i~~gG  239 (452)
T PRK07445        208 DFFLSLVPTQLQRLLQLRP------------------------------------------------QWLAQFRTILLGG  239 (452)
T ss_pred             ceEEEehHHHHHHHHhhCh------------------------------------------------hhhhcceEEEECC
Confidence            9999999999998764100                                                0014899999999


Q ss_pred             CCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEe
Q 007257          344 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  422 (611)
Q Consensus       344 ~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~  422 (611)
                      ++++++..+.+.. +++++++.||+||++..+....+.. ....+++|+|+|++++++++           ++.|||+|+
T Consensus       240 ~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~  307 (452)
T PRK07445        240 APAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQ  307 (452)
T ss_pred             ccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEe
Confidence            9999999988876 4899999999999986654433322 22346899999999999872           347999999


Q ss_pred             cCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecC
Q 007257          423 GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS  502 (611)
Q Consensus       423 ~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~  502 (611)
                      |+.++.||++++..     .+|||+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+
T Consensus       308 g~~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~  381 (452)
T PRK07445        308 AQSLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLP  381 (452)
T ss_pred             CCccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEecc
Confidence            99999999986431     3789999999999999999999999999996 99999999999999999999999999987


Q ss_pred             CC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCc
Q 007257          503 LK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDL  579 (611)
Q Consensus       503 ~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P  579 (611)
                      +.   +.++|++++.++..                 +        .+++.++++ ++|+.|++|+.++++++.      |
T Consensus       382 ~~~~g~~~~a~vv~~~~~~-----------------~--------~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P  429 (452)
T PRK07445        382 DPHWGEVVTAIYVPKDPSI-----------------S--------LEELKTAIK-DQLSPFKQPKHWIPVPQL------P  429 (452)
T ss_pred             CcCCCcEEEEEEEeCCCCC-----------------C--------HHHHHHHHH-HhCCcccCCeEEEEecCC------C
Confidence            65   37888888765310                 1        123444443 679999999999998765      9


Q ss_pred             cccccccchHHHHHHHHHHHH
Q 007257          580 VTATLKKKRNKLLIYYQVEID  600 (611)
Q Consensus       580 ~t~~GKv~R~~l~~~~~~~~~  600 (611)
                      +|++||++|++|+++++++|+
T Consensus       430 ~t~~GKi~r~~L~~~~~~~~~  450 (452)
T PRK07445        430 RNPQGKINRQQLQQIAVQRLG  450 (452)
T ss_pred             CCCCcccCHHHHHHHHHHhhC
Confidence            999999999999999988774

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-60  Score=520.94  Aligned_cols=487  Identities=20%  Similarity=0.232  Sum_probs=373.0

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++||++|+++.   +      +.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|+++++
T Consensus        46 ~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~  116 (600)
T PRK08279         46 AAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVAL  116 (600)
T ss_pred             HHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEee
Confidence            56789999999986   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.++++++|++++....+...... ......++..++....          ....|.++.......
T Consensus       117 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  185 (600)
T PRK08279        117 LNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARAD-LARPPRLWVAGGDTLD----------DPEGYEDLAAAAAGA  185 (600)
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhh-hcccceEEEecCcccc----------ccccHHHHhhhcccC
Confidence            99999999999999999999999998766554332211 1222233333221100          011233333222111


Q ss_pred             ----CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHH
Q 007257          162 ----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY  237 (611)
Q Consensus       162 ----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~  237 (611)
                          ........++++++++|||||||.||+|.+||.++.+.+..+...+     ++..+|++++.+|++|.+++...+.
T Consensus       186 ~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~~pl~h~~g~~~~~~  260 (600)
T PRK08279        186 PTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLPLYHNTGGTVAWS  260 (600)
T ss_pred             CccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEecCchhhhhHHHHHH
Confidence                1112334678999999999999999999999999999888776665     7889999999999999999887555


Q ss_pred             -HhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007257          238 -FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  315 (611)
Q Consensus       238 -~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (611)
                       ++..|+++++.+. ++..+++.++++++|++.++|++++.+........                              
T Consensus       261 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~------------------------------  310 (600)
T PRK08279        261 SVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT------------------------------  310 (600)
T ss_pred             HHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc------------------------------
Confidence             5778888888766 89999999999999999999999987764211000                              


Q ss_pred             cchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCC-ceeeccccCCCCCceeeccCCCccccCccCCCcc
Q 007257          316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  394 (611)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~  394 (611)
                                     ....+++.+  +|+.+++++.+.|.+.++. .+++.||+||++..+...    ....+++|.+.+
T Consensus       311 ---------------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~----~~~~~~~g~~~~  369 (600)
T PRK08279        311 ---------------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV----FNFDGTVGRVPL  369 (600)
T ss_pred             ---------------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc----CCCCcccccccc
Confidence                           001366654  4778999999999998875 599999999998644322    122356676555


Q ss_pred             ----Cee---------EEEeecCCCCCCCCCCCCCcEEE--EecCCcccccCCChHhhhhhc-------cCCccccCceE
Q 007257          395 ----YSE---------LRLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI-------IDGWFHTGDIG  452 (611)
Q Consensus       395 ----~~~---------v~i~~~~~~~~~~~~~~~~Gel~--v~~~~~~~gy~~~~~~~~~~~-------~~g~~~TGD~~  452 (611)
                          +..         ..+.+ .++....++.++.|||+  +.+++++.|| ++++.+.+.|       .++||+|||+|
T Consensus       370 ~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg  447 (600)
T PRK08279        370 WLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLM  447 (600)
T ss_pred             cccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceE
Confidence                222         22233 33333456778899998  6799999999 8888887765       25799999999


Q ss_pred             EEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC----CeEEEEEecChHHHHHHHHHCCCC
Q 007257          453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHA  528 (611)
Q Consensus       453 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~vv~~~~~~~~~~~~~~~~  528 (611)
                      ++++||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++.    ...+++++..++.        .. 
T Consensus       448 ~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~--------~~-  517 (600)
T PRK08279        448 RDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGA--------EF-  517 (600)
T ss_pred             EEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCc--------cC-
Confidence            99999999999999999997 8999999999999999999999999986532    2344555544321        00 


Q ss_pred             CcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          529 GSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                             +        .+++.++++ .+||.|++|+.++++++.      |+|.+||++|++|++++.+.
T Consensus       518 -------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~  565 (600)
T PRK08279        518 -------D--------LAALAAHLY-ERLPAYAVPLFVRLVPEL------ETTGTFKYRKVDLRKEGFDP  565 (600)
T ss_pred             -------C--------HHHHHHHHH-hhCccccCCeEEEeecCC------CCCcchhhhHHHHhhcCCCc
Confidence                   1        124445554 679999999999999765      99999999999999877543

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.7e-59  Score=512.25  Aligned_cols=500  Identities=23%  Similarity=0.311  Sum_probs=384.0

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +++++|+++|+++.    +     +.+||.||.+++.++|.+|. +.|+++||+|+++++|++++++++|||+++|++++
T Consensus        34 ~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  104 (560)
T PRK08751         34 SVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVV  104 (560)
T ss_pred             HHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEe
Confidence            46789999999875    3     68999999999999999997 57999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcH--------------HHHHHh-hhCC
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--------------EQKEMA-VQTG  145 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~-~~~~  145 (611)
                      |++|.++.+++.+++++++++++++++.....+...... .+ ...++.......              ...... .-..
T Consensus       105 ~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (560)
T PRK08751        105 NVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIAD-TP-VKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRI  182 (560)
T ss_pred             ccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhC-CC-ccEEEEechhhhcccccchhhhhhhhhhhccccccCC
Confidence            999999999999999999999999988765443322211 11 222222210000              000000 0000


Q ss_pred             CceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCC-CcEEEEec
Q 007257          146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLSFL  224 (611)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  224 (611)
                      .....+.+................++++++++|||||||.||+|.++|.++...+......+... ..+.. .+++++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  261 (560)
T PRK08751        183 NGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGT-GKLEEGCEVVITAL  261 (560)
T ss_pred             CccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccc-cccCCCCceEEEec
Confidence            11233444443332222223345678999999999999999999999999987766544333110 01233 36778889


Q ss_pred             chhhHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007257          225 PLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  301 (611)
Q Consensus       225 p~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  301 (611)
                      |++|.+++.. .+.++..|++++++..  ++..+++.++++++|++.++|.++..+.+...                   
T Consensus       262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------------------  322 (560)
T PRK08751        262 PLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG-------------------  322 (560)
T ss_pred             ChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC-------------------
Confidence            9999999865 4455667777766543  88999999999999999999999988764210                   


Q ss_pred             HHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCC
Q 007257          302 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  381 (611)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~  381 (611)
                                        .+..++        +++|.+++||+++++.+.+.|++.+|+++++.||+||++..++.+...
T Consensus       323 ------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  376 (560)
T PRK08751        323 ------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLT  376 (560)
T ss_pred             ------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceeccccc
Confidence                              011111        389999999999999999999998899999999999999877665543


Q ss_pred             CccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeE
Q 007257          382 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV  460 (611)
Q Consensus       382 ~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l  460 (611)
                      .....+++|.+++++++++.+ +++  .+++.++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|++
T Consensus       377 ~~~~~~~vG~~~~~~~v~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l  453 (560)
T PRK08751        377 LKEYNGSIGLPIPSTDACIKD-DAG--TVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFV  453 (560)
T ss_pred             ccccCCCcCccCCCceEEEEC-CCC--CCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceE
Confidence            334457899999999999998 554  455677899999999999999999999998888 6899999999999999999


Q ss_pred             EEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhcc
Q 007257          461 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  537 (611)
Q Consensus       461 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~  537 (611)
                      ++.||.+|+|++ +|.+|+|.+||+.|..+|+|.+|+|++.++.   +.+.++++.....         .        + 
T Consensus       454 ~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~---------~--------~-  514 (560)
T PRK08751        454 YIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPA---------L--------T-  514 (560)
T ss_pred             EEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCC---------C--------C-
Confidence            999999999997 8999999999999999999999999997654   3566666654311         0        1 


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          538 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       538 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                             .+++++.++ ..++.+++|..+.+++..      |+|++||++|++|++.
T Consensus       515 -------~~~l~~~~~-~~l~~~~~P~~v~~v~~l------P~t~~gKv~r~~L~~~  557 (560)
T PRK08751        515 -------AEDVKAHAR-ANLTGYKQPRIIEFRKEL------PKTNVGKILRRELRDA  557 (560)
T ss_pred             -------HHHHHHHHH-HhhhhccCCeEEEEhhhC------CCCccccccHHHHHHh
Confidence                   123344443 568999999999998665      9999999999999875

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-59  Score=507.65  Aligned_cols=468  Identities=22%  Similarity=0.238  Sum_probs=371.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        44 ~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vp  114 (516)
T PRK13383         44 TAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVP  114 (516)
T ss_pred             HHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEE
Confidence            46789999999865   2      48999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.++++++++++.....+....       ..++.++....                 ...      
T Consensus       115 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~-----------------~~~------  164 (516)
T PRK13383        115 ISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA-----------------GAE------  164 (516)
T ss_pred             cCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh-----------------hhh------
Confidence            999999999999999999999999887655432210       11222221100                 000      


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      .....+...++.++++|||||||.||+|.++|.... ........+.  ..++..++++++..|++|.+++...+.++..
T Consensus       165 ~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~-~~~~~~~~~~--~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~  241 (516)
T PRK13383        165 ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRS-AVGVWVTILD--RTRLRTGSRISVAMPMFHGLGLGMLMLTIAL  241 (516)
T ss_pred             cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhh-hhhhHHhHHh--hhccCCCCeEEEecCCcchhhHHHHHHHHhc
Confidence            000112234567899999999999999999997432 1111111111  1156788999999999999999877778899


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++... ++..+++.++++++|.+.++|.++..+........                                   
T Consensus       242 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------  286 (516)
T PRK13383        242 GGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR-----------------------------------  286 (516)
T ss_pred             CCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc-----------------------------------
Confidence            999988765 99999999999999999999999988764221100                                   


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  400 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  400 (611)
                              ....++++|.+++||+++++++.++|.+.+|.++++.||+||++..+...........+++|.|+++++++|
T Consensus       287 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i  358 (516)
T PRK13383        287 --------ARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRI  358 (516)
T ss_pred             --------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCcEEEE
Confidence                    000124899999999999999999999999999999999999987665544333344578999999999999


Q ss_pred             eecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCc
Q 007257          401 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVAL  480 (611)
Q Consensus       401 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~  480 (611)
                      ++ +++  .+++.++.|||+++|+.++.||++++.   ..+.+|||+|||+|++|++|++++.||.+|+|++ +|.+|+|
T Consensus       359 ~d-~~~--~~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~G~~v~~  431 (516)
T PRK13383        359 LD-RNN--RPVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIIS-GGENVYP  431 (516)
T ss_pred             EC-CCC--CCCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEeccccceEEE-CCEEECH
Confidence            98 554  456678899999999999999998753   3346899999999999999999999999999997 9999999


Q ss_pred             HHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCC
Q 007257          481 EYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKL  557 (611)
Q Consensus       481 ~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  557 (611)
                      .+||+.|.+||.|.++++++.++.   +.+.++|++++...        .        +        .++++++++ +++
T Consensus       432 ~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~--------~--------~--------~~~l~~~~~-~~l  486 (516)
T PRK13383        432 RAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSG--------V--------D--------AAQLRDYLK-DRV  486 (516)
T ss_pred             HHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC--------C--------C--------HHHHHHHHH-Hhc
Confidence            999999999999999999997644   47888888765320        0        1        123444443 668


Q ss_pred             CCcceeeeEEEecCCCCCCCCccccccccchHHHH
Q 007257          558 RGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  592 (611)
Q Consensus       558 ~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  592 (611)
                      +.|++|..+.++++.      |+|++||++|++|.
T Consensus       487 ~~~~~p~~i~~v~~i------P~t~~gKi~r~~L~  515 (516)
T PRK13383        487 SRFEQPRDINIVSSI------PRNPTGKVLRKELP  515 (516)
T ss_pred             ccCCCCcEEEEeCCC------CCCCCCcCcHHHhC
Confidence            899999999999765      99999999999873

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=5.7e-60  Score=563.81  Aligned_cols=471  Identities=21%  Similarity=0.244  Sum_probs=385.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +.+||+||.++++++|+.|.+.|+++|++|++++++++++++++|||+++|++++|
T Consensus       467 ~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vp  537 (1296)
T PRK10252        467 QAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLP  537 (1296)
T ss_pred             HHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            46789999999986   3      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++.+++++++++......+...     +.. .++..+.                     ....  ..
T Consensus       538 ld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~~---------------------~~~~--~~  588 (1296)
T PRK10252        538 LDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYNA---------------------PLAP--QG  588 (1296)
T ss_pred             cCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeeccc---------------------cccc--cc
Confidence            99999999999999999999999987655433211     000 0111100                     0000  00


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||||+++|+++.+.+......+     ++..+|++++..|++|..++..++.++..
T Consensus       589 ~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~l~~  663 (1296)
T PRK10252        589 AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVSVWEFFWPFIA  663 (1296)
T ss_pred             CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhhHHHHHHHHhC
Confidence            1111223678999999999999999999999999999988877766     78899999999999999998888889999


Q ss_pred             CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      |+++++.+.    ++..+++.++++++|++.++|+++..+.+.......                               
T Consensus       664 G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~-------------------------------  712 (1296)
T PRK10252        664 GAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA-------------------------------  712 (1296)
T ss_pred             CCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc-------------------------------
Confidence            999999763    889999999999999999999999887653211000                               


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC------ccccCccCC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE------MCMVGTAGP  391 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~------~~~~~~~G~  391 (611)
                                  ...++++|.+++||+++++++.+.|.+.++++++|.||+||++..++......      .....++|.
T Consensus       713 ------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~  780 (1296)
T PRK10252        713 ------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGY  780 (1296)
T ss_pred             ------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCccc
Confidence                        00114899999999999999999999888999999999999987666543221      223367899


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------CCccccCceEEEccCCeEEEEe
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIID  464 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~dG~l~~~G  464 (611)
                      |+++++++|+| +++  .+++.|+.|||+|+|++++.||+++++.|.+.|.       ++||+|||+|++++||.++++|
T Consensus       781 p~~~~~~~i~d-~~~--~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~G  857 (1296)
T PRK10252        781 PVWNTGLRILD-ARM--RPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLG  857 (1296)
T ss_pred             ccCCCEEEEEC-CCC--CCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEec
Confidence            99999999998 544  4567788999999999999999999999999882       2499999999999999999999


Q ss_pred             ccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEec---------CCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHh
Q 007257          465 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD---------SLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  535 (611)
Q Consensus       465 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~---------~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~  535 (611)
                      |.||+||+ +|++|++.+||++|.+||+|.+++|+..         .+.+.+++++++..+..        .        
T Consensus       858 R~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~--------~--------  920 (1296)
T PRK10252        858 RSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLP--------L--------  920 (1296)
T ss_pred             ccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCC--------C--------
Confidence            99999998 9999999999999999999999987643         11237999999765320        0        


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          536 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       536 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      +        .+.|+++++ .+||.|++|..++.+++.      |+|++||++|++|.+
T Consensus       921 ~--------~~~l~~~l~-~~Lp~~~~P~~~~~~~~l------P~t~~GKidr~~L~~  963 (1296)
T PRK10252        921 D--------TSALQAQLR-ERLPPHMVPVVLLQLDQL------PLSANGKLDRKALPL  963 (1296)
T ss_pred             C--------HHHHHHHHH-hhCchhcCCcEEEEecCC------CCCCCcChhHHhcCC
Confidence            1        123444443 689999999999988665      999999999999965

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.2e-60  Score=607.31  Aligned_cols=490  Identities=21%  Similarity=0.219  Sum_probs=396.0

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +.+||+||.++++++|++|.+.|+++|++|++++++++++++++|||+++|++++|
T Consensus      1583 ~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vp 1653 (3956)
T PRK12467       1583 QAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVP 1653 (3956)
T ss_pred             HHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeee
Confidence            57889999999986   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++++++++++++......+...     ... .++.++....                  +.... ..
T Consensus      1654 ldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~~------------------~~~~~-~~ 1708 (3956)
T PRK12467       1654 LDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQEDD------------------WLEGY-SD 1708 (3956)
T ss_pred             cCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEeccccc------------------hhccC-CC
Confidence            99999999999999999999999987654432110     111 2222222110                  00000 11


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||||+++|+++.+.+......+     ++..++++++..|++|..++..++.++..
T Consensus      1709 ~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~L~~ 1783 (3956)
T PRK12467       1709 SNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDVSVWELFWPLIN 1783 (3956)
T ss_pred             CCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHHHHHHHHHHHhC
Confidence            1222345688999999999999999999999999999888876666     78889999999999999998888889999


Q ss_pred             CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      |+++++.+.    ++..+++.|+++++|++.++|++++.|.+....                                  
T Consensus      1784 G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---------------------------------- 1829 (3956)
T PRK12467       1784 GARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ---------------------------------- 1829 (3956)
T ss_pred             CCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc----------------------------------
Confidence            999999864    789999999999999999999999988652100                                  


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCC----CccccCccCCC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMCMVGTAGPV  392 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~----~~~~~~~~G~~  392 (611)
                                  ...+++||.+++||++++++..+.|.+.+ +..++|.||+||++..++.....    ......++|+|
T Consensus      1830 ------------~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p 1897 (3956)
T PRK12467       1830 ------------VEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQP 1897 (3956)
T ss_pred             ------------cccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccc
Confidence                        00124899999999999999999988776 57899999999999766643322    11223689999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc--------CCccccCceEEEccCCeEEEEe
Q 007257          393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILPNGVVKIID  464 (611)
Q Consensus       393 ~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~dG~l~~~G  464 (611)
                      +++++++|.| +++  .+++.|+.|||+|+|++++.||+++++.|.+.|.        ++||+|||+|++++||.++++|
T Consensus      1898 ~~~~~~~vld-~~~--~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~G 1974 (3956)
T PRK12467       1898 IANLSTYILD-ASL--NPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLG 1974 (3956)
T ss_pred             cCCCEEEEEC-CCC--CCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEec
Confidence            9999999988 544  4667788999999999999999999999999882        2499999999999999999999


Q ss_pred             ccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHH
Q 007257          465 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  542 (611)
Q Consensus       465 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (611)
                      |.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++  .+.++|++++..+...                ...+..+
T Consensus      1975 R~D~qVki-~G~rIel~eIE~~l~~~p~V~~a~vv~~~~~~~~~lva~vv~~~~~~~----------------~~~~~~~ 2037 (3956)
T PRK12467       1975 RIDHQVKI-RGFRIELGEIEARLREQGGVREAVVIAQDGANGKQLVAYVVPTDPGLV----------------DDDEAQV 2037 (3956)
T ss_pred             ccCceEEe-CeEEechHHHHHHHHhCCCcceEEEEEecCCCCcEEEEEEEecCcccc----------------ccccccc
Confidence            99999998 899999999999999999999999998653  2589999997654210                0001111


Q ss_pred             HHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHH
Q 007257          543 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY  603 (611)
Q Consensus       543 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y  603 (611)
                      ...+.|+++++ ..||.|++|..+++++..      |+|++||++|++|.+.+...++..|
T Consensus      2038 ~~~~~l~~~l~-~~Lp~ymvP~~~~~l~~l------P~t~~GKidr~~L~~~~~~~~~~~~ 2091 (3956)
T PRK12467       2038 ALRAILKNHLK-ASLPEYMVPAHLVFLARM------PLTPNGKLDRKALPAPDASELQQAY 2091 (3956)
T ss_pred             ccHHHHHHHHH-hhCchhhCchhhhhhhcC------CCCCCCCcchhhCCCCccccccccc
Confidence            22345666664 789999999999998665      9999999999999775544433333

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-58  Score=500.19  Aligned_cols=493  Identities=20%  Similarity=0.180  Sum_probs=385.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+++.   ++.    +.+||.||.+++.++|++|.+.|+++|++|+++++|++++++++|||+++|+++++
T Consensus         6 ~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~   78 (511)
T PRK13391          6 HAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTC   78 (511)
T ss_pred             hHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEec
Confidence            57889999999874   221    68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.+++++++++............ ........+.......         ......+.+......  
T Consensus        79 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--  146 (511)
T PRK13391         79 VNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLK-QCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP--  146 (511)
T ss_pred             cccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHh-cCCCceEEEEecCCCC---------CcccccHHHHhcCCC--
Confidence            9999999999999999999999999876554322211 1223333333332110         011223333322111  


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeec--cHhHHHhh---hhcccccccccCCCCCCcEEEEecchhhHHHHHHHH
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLT--HETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE  236 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s--~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~  236 (611)
                        .......++.++++|||||||.||+|.++  |.++....   ......+     .+..++++++..|++|.+++...+
T Consensus       147 --~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~~~  219 (511)
T PRK13391        147 --ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRAVM  219 (511)
T ss_pred             --CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHHHH
Confidence              01112344678999999999999999964  55543322   2222222     567889999999999999988777


Q ss_pred             HHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007257          237 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  315 (611)
Q Consensus       237 ~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (611)
                      .++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......                              
T Consensus       220 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------  269 (511)
T PRK13391        220 LVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR------------------------------  269 (511)
T ss_pred             HHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc------------------------------
Confidence            78899999998876 99999999999999999999999988764211100                              


Q ss_pred             cchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccC
Q 007257          316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY  395 (611)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~  395 (611)
                           +        ...+++++.+++||+++++++.+.+.+.+|..+++.||+||++++............+++|.++++
T Consensus       270 -----~--------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g  336 (511)
T PRK13391        270 -----D--------KYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG  336 (511)
T ss_pred             -----c--------cCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc
Confidence                 0        011248999999999999999999999889999999999999987665443333445789999999


Q ss_pred             eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-c-CCccccCceEEEccCCeEEEEeccCCeEEcC
Q 007257          396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  473 (611)
Q Consensus       396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~-~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~  473 (611)
                       ++++++ +++  .+++.|+.|||+++|+ ++.||+++++.+.+.+ . ++||+|||+|+++++|.+++.||.+|++++ 
T Consensus       337 -~~~i~d-~~~--~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-  410 (511)
T PRK13391        337 -DLHILD-DDG--AELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIIS-  410 (511)
T ss_pred             -eEEEEC-CCC--CCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEe-
Confidence             688887 444  4556778999999999 8889999999998888 3 389999999999999999999999999996 


Q ss_pred             CceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 007257          474 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  550 (611)
Q Consensus       474 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  550 (611)
                      +|.++++.+||++|.+||.|.+|+|++.++.   +.+++++++.++..                 ..    +.+.+.+.+
T Consensus       411 ~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~-----------------~~----~~~~~~l~~  469 (511)
T PRK13391        411 GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVD-----------------PG----PALAAELIA  469 (511)
T ss_pred             CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCC-----------------cc----cchHHHHHH
Confidence            9999999999999999999999999987655   36778887765320                 01    112234555


Q ss_pred             HHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          551 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       551 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +++ ..||.|+.|..|.++++.      |+|++||++|+.|++.|..
T Consensus       470 ~~~-~~l~~~~~P~~i~~~~~~------P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        470 FCR-QRLSRQKCPRSIDFEDEL------PRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             HHH-hhcccCcCCcEEEEeecC------CCCCccceeHHHHHHHhhc
Confidence            554 789999999999998765      9999999999999998753

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.8e-59  Score=507.94  Aligned_cols=501  Identities=21%  Similarity=0.239  Sum_probs=384.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+.+||++|+.+.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus        42 ~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~  112 (567)
T PRK06178         42 WARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVP  112 (567)
T ss_pred             HHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEee
Confidence            46779999999876   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHH-------HhhhCCCceeeHHHH
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKE-------MAVQTGIKPYSWDEF  154 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  154 (611)
                      ++|.++..++.++++.++++++++++.....+.......  ....++...........       ...........+.++
T Consensus       113 l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (567)
T PRK06178        113 VSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDL  190 (567)
T ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEeccccccccccccccccccccccccccccccH
Confidence            999999999999999999999999987766553322211  22333332211100000       000000000112222


Q ss_pred             Hhcccc--cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHH
Q 007257          155 LHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  232 (611)
Q Consensus       155 ~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~  232 (611)
                      ......  .........++++++++|||||||.||+|.+||.++...+.......    ..+..++++++.+|++|.+|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~g~  266 (567)
T PRK06178        191 LPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSVFLSFLPEFWIAGE  266 (567)
T ss_pred             HHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcEEEEecchHHHHHH
Confidence            221111  11122345678999999999999999999999999887655433221    156788999999999999998


Q ss_pred             HH-HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007257          233 VI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  310 (611)
Q Consensus       233 ~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (611)
                      .. ++.++..|+++++.+. ++..++..++++++|.+.++|..+..+.....                            
T Consensus       267 ~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~----------------------------  318 (567)
T PRK06178        267 NFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR----------------------------  318 (567)
T ss_pred             HHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC----------------------------
Confidence            64 6667999999999886 89999999999999999999998877654110                            


Q ss_pred             CCCCCcchHHHHHhhHHHHHHcCCceeEEE--EecCCCCHHHHHHHHHHcCCceee-ccccCCCCCceeeccC--CC---
Q 007257          311 YKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCGPTTVCFP--DE---  382 (611)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~--~~G~~l~~~~~~~~~~~~~~~v~~-~yG~tE~g~~~~~~~~--~~---  382 (611)
                               ....+        +++++.+.  +.|+.++++..+.|++.+|..++. .||+||+++.+.....  ..   
T Consensus       319 ---------~~~~~--------l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  381 (567)
T PRK06178        319 ---------FAEYD--------LSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFD  381 (567)
T ss_pred             ---------CCCCC--------cchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccc
Confidence                     00011        12566544  446899999999999988877765 7999999876544321  11   


Q ss_pred             -ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEE
Q 007257          383 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK  461 (611)
Q Consensus       383 -~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~  461 (611)
                       ...++++|.|+++++++++| ++ ...+++.++.|||+++|++++.||+++++.+...|.+|||+|||++++++||+++
T Consensus       382 ~~~~~~~vG~p~~g~~v~v~d-~~-~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~  459 (567)
T PRK06178        382 LLSQPVFVGLPVPGTEFKICD-FE-TGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLH  459 (567)
T ss_pred             cccCCcccccccCCcEEEEEc-CC-CCCcCCCCCceEEEEECCcccccccCChhhhhhcccCCceeecceEEEecCCeEE
Confidence             12346789999999999998 33 2355677889999999999999999999999988889999999999999999999


Q ss_pred             EEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccH
Q 007257          462 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  538 (611)
Q Consensus       462 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (611)
                      +.||.+|+|++ +|.+|+|.+||+++.++|+|.+++|++.++.   +.+++++++++...        .        +  
T Consensus       460 i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------~--  520 (567)
T PRK06178        460 YLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGAD--------L--------T--  520 (567)
T ss_pred             EEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCc--------C--------C--
Confidence            99999999997 8999999999999999999999999987654   47888888765320        0        1  


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          539 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       539 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                            .++|.++++ ++++.+++|. +.++++.      |+|++||++|++|++++++
T Consensus       521 ------~~~l~~~~~-~~l~~~~~p~-i~~v~~i------P~t~~GKv~r~~l~~~~~~  565 (567)
T PRK06178        521 ------AAALQAWCR-ENMAVYKVPE-IRIVDAL------PMTATGKVRKQDLQALAEE  565 (567)
T ss_pred             ------HHHHHHHHH-hcCcccCCce-EEEeccC------CCCCccceeHHHHHHHHHh
Confidence                  123444443 6799999996 7776554      9999999999999998865

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.9e-60  Score=612.82  Aligned_cols=473  Identities=20%  Similarity=0.199  Sum_probs=393.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus       520 ~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vp  590 (5163)
T PRK12316        520 QVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVP  590 (5163)
T ss_pred             HHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEec
Confidence            57899999999986   3      69999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++.+++++++++......+..      .....++.++....                  ..... ..
T Consensus       591 ld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~------------------~~~~~-~~  645 (5163)
T PRK12316        591 LDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPAA------------------WLEGY-SE  645 (5163)
T ss_pred             cCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcch------------------hhccC-CC
Confidence            9999999999999999999999998765443211      10112233322110                  00000 11


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||||+++|+++.+.+.+....+     ++..++++++..|++|..++...+.++..
T Consensus       646 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~~~~~~~~L~~  720 (5163)
T PRK12316        646 ENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVSVWEFFWPLMS  720 (5163)
T ss_pred             CCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHHHHHHHHHHhC
Confidence            1222345688999999999999999999999999999988877766     78899999999999999998888889999


Q ss_pred             CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      |+++++.+.    ++..+++.++++++|++.++|++++.|.+....                                  
T Consensus       721 G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------------------------  766 (5163)
T PRK12316        721 GARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV----------------------------------  766 (5163)
T ss_pred             CCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc----------------------------------
Confidence            999999853    899999999999999999999999988642100                                  


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccC-CCccccCccCCCccC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVY  395 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~-~~~~~~~~~G~~~~~  395 (611)
                                   ..++++|.+++||+++++++.+.|.+.+ +++++|.||+||++..++.... .......++|+|+++
T Consensus       767 -------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~  833 (5163)
T PRK12316        767 -------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIAN  833 (5163)
T ss_pred             -------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCC
Confidence                         0124899999999999999999987665 7899999999999865443322 222334689999999


Q ss_pred             eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------CCccccCceEEEccCCeEEEEeccCC
Q 007257          396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKKN  468 (611)
Q Consensus       396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~dG~l~~~GR~~d  468 (611)
                      ++++|+| +++  .+++.|+.|||+|+|++++.||+++++.|.+.|.       ++||+|||+|++++||.+++.||.||
T Consensus       834 ~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~  910 (5163)
T PRK12316        834 LACYILD-ANL--EPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDH  910 (5163)
T ss_pred             CEEEEEC-CCC--CCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCC
Confidence            9999998 554  4667888999999999999999999999999882       35999999999999999999999999


Q ss_pred             eEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257          469 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  548 (611)
Q Consensus       469 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  548 (611)
                      +||+ +|++|+|.|||++|.+||+|.+|+|++.+ .+.++|+|++.++..                        ...+.+
T Consensus       911 ~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~------------------------~~~~~l  964 (5163)
T PRK12316        911 QVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGG------------------------DWREAL  964 (5163)
T ss_pred             EEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCC------------------------CCHHHH
Confidence            9998 89999999999999999999999999987 778999999876320                        001245


Q ss_pred             HHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          549 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       549 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                      +++++ ..||.|++|+.|+++++.      |+|++||++|++|.+.+.
T Consensus       965 ~~~l~-~~Lp~y~vP~~i~~v~~l------P~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        965 KAHLA-ASLPEYMVPAQWLALERL------PLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             HHHHH-hhCCCccCCCeEEEHhhC------CCCCCCChhHHhhcCccc
Confidence            55554 789999999999998765      999999999999987543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=6.9e-59  Score=501.42  Aligned_cols=474  Identities=19%  Similarity=0.197  Sum_probs=384.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+.+||++|+...   +      +.+||.||.+++.++|..|.+.|+++|++|+++++|+.++++++|||+++|++++|
T Consensus        11 ~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~   81 (503)
T PRK04813         11 FAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP   81 (503)
T ss_pred             HHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence            57789999998865   2      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc--c
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG--K  159 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  159 (611)
                      +++.++.+++.++++..+++++++++......        ... .                     ...++++....  .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~---------------------~~~~~~~~~~~~~~  131 (503)
T PRK04813         82 VDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-P---------------------VITLDELKDIFATG  131 (503)
T ss_pred             CCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-c---------------------EEehHHhhhhhhcc
Confidence            99999999999999999999999987641000        000 1                     11111111110  0


Q ss_pred             ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257          160 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF  239 (611)
Q Consensus       160 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l  239 (611)
                      ..........++++++++|||||||.||+|.++|+++...+......+     .+..++++++..|++|..++..++.++
T Consensus       132 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l  206 (503)
T PRK04813        132 NPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFDLSVMDLYPTL  206 (503)
T ss_pred             ccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchhHhHHHHHHHH
Confidence            111112345678899999999999999999999999998777665555     678899999999999999887788889


Q ss_pred             hcCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007257          240 RRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  315 (611)
Q Consensus       240 ~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (611)
                      ..|+++++++.    ++..+++.++++++|++.++|+++..+......                                
T Consensus       207 ~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~--------------------------------  254 (503)
T PRK04813        207 ASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF--------------------------------  254 (503)
T ss_pred             hcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc--------------------------------
Confidence            99999998875    789999999999999999999998776432110                                


Q ss_pred             cchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC----ccccCccC
Q 007257          316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAG  390 (611)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G  390 (611)
                                   ....+++++.++++|+++++.+.+.+.+.+ ++++++.||+||++..+.......    .....++|
T Consensus       255 -------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g  321 (503)
T PRK04813        255 -------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIG  321 (503)
T ss_pred             -------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCccc
Confidence                         011124899999999999999999999988 789999999999986554432211    22335789


Q ss_pred             CCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc--C--CccccCceEEEccCCeEEEEecc
Q 007257          391 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       391 ~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~--g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      .+.+++++++++ +++  .+++.++.|||+++|+.++.||+++++.+...|.  +  +||+|||+|++ ++|++++.||.
T Consensus       322 ~~~~~~~~~i~d-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~  397 (503)
T PRK04813        322 YAKPDSPLLIID-EEG--TKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRI  397 (503)
T ss_pred             ccCCCCEEEEEC-CCC--CCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccc
Confidence            999999999998 544  4556778999999999999999999999988873  3  49999999999 89999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  543 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (611)
                      +|+|++ +|++++|.+||+.+.++|+|.+++|++.++.   +.++++++++++...                ..    ..
T Consensus       398 ~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------------~~----~~  456 (503)
T PRK04813        398 DFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFE----------------RE----FE  456 (503)
T ss_pred             cceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccccc----------------cc----ch
Confidence            999997 9999999999999999999999999985543   478888887763100                11    12


Q ss_pred             HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                      +.+.++++++ ..++.+++|+.+.++++.      |+|++||++|++|+++++
T Consensus       457 ~~~~l~~~~~-~~l~~~~~P~~i~~~~~~------P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        457 LTKAIKKELK-ERLMEYMIPRKFIYRDSL------PLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             hHHHHHHHHH-hhCccccCCeEEEEeccC------CCCCCCCCcHHHHHHHhc
Confidence            3345555654 679999999999998765      999999999999999875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.3e-60  Score=611.26  Aligned_cols=473  Identities=20%  Similarity=0.250  Sum_probs=389.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus      2012 ~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~vp 2082 (5163)
T PRK12316       2012 QAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVP 2082 (5163)
T ss_pred             HHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEee
Confidence            57889999999986   4      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.+++++++++++++++.....+...     ... ..+.++...                  .+.. . ..
T Consensus      2083 ld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~~------------------~~~~-~-~~ 2136 (5163)
T PRK12316       2083 LDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGV-ARLPLDRDA------------------EWAD-Y-PD 2136 (5163)
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----ccc-ceEeccchh------------------hhhc-c-Cc
Confidence            99999999999999999999999988655433110     011 111111100                  0000 0 11


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||||+++|.++.+.+......+     ++..+++++.+.|++|..++..++.++..
T Consensus      2137 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~L~~ 2211 (5163)
T PRK12316       2137 TAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDGAHEQWFHPLLN 2211 (5163)
T ss_pred             cCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHHHHHHHHHHHhC
Confidence            1122345789999999999999999999999999999988877766     78899999999999999888888899999


Q ss_pred             CceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          242 GASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       242 G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      |+++++.+.   ++..+++.++++++|+++++|+++..+.......                                  
T Consensus      2212 G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------------- 2257 (5163)
T PRK12316       2212 GARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD---------------------------------- 2257 (5163)
T ss_pred             CCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc----------------------------------
Confidence            999977653   7899999999999999999999999886532110                                  


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCc-c---ccCccCCCc
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM-C---MVGTAGPVS  393 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~-~---~~~~~G~~~  393 (611)
                                  ...++||.+++||+++++++.+.|.+.+ +..++|.||+||++..++....... .   ...++|+|+
T Consensus      2258 ------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~ 2325 (5163)
T PRK12316       2258 ------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRAL 2325 (5163)
T ss_pred             ------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCcCCccccc
Confidence                        0113899999999999999999998766 6789999999999876654332211 1   125799999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc--------CCccccCceEEEccCCeEEEEec
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILPNGVVKIIDR  465 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~dG~l~~~GR  465 (611)
                      ++++++|+| +++  .+++.|+.|||+|+|++++.||+++|+.|.+.|.        ++||+|||+|++++||.++++||
T Consensus      2326 ~~~~~~i~d-~~~--~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR 2402 (5163)
T PRK12316       2326 GNRRAYILD-ADL--NLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGR 2402 (5163)
T ss_pred             CCCEEEEEC-CCC--CCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecC
Confidence            999999998 554  4667889999999999999999999999999982        25999999999999999999999


Q ss_pred             cCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257          466 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  543 (611)
Q Consensus       466 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (611)
                      .||+||+ +|++|+|.|||++|.+||+|.+++|++.++.  +.++|+|++.++..                        .
T Consensus      2403 ~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~------------------------~ 2457 (5163)
T PRK12316       2403 IDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAE------------------------D 2457 (5163)
T ss_pred             CCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCc------------------------c
Confidence            9999998 8999999999999999999999999986543  48999999876420                        0


Q ss_pred             HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHH
Q 007257          544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  595 (611)
Q Consensus       544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  595 (611)
                      ..+.|+++++ ..||.|++|..+++++..      |+|++||++|++|.+..
T Consensus      2458 ~~~~l~~~l~-~~Lp~~~vP~~~~~l~~l------P~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2458 LLAELRAWLA-ARLPAYMVPAHWVVLERL------PLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             CHHHHHHHHH-hhCchhcCcceEeeeccc------CCCCCCccCHhhcCCCc
Confidence            1233444554 789999999999988665      99999999999997654

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.9e-59  Score=495.09  Aligned_cols=440  Identities=25%  Similarity=0.303  Sum_probs=365.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+++.    +     +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|
T Consensus        12 ~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~   82 (458)
T PRK09029         12 WAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLP   82 (458)
T ss_pred             HHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEee
Confidence            46789999999865    3     68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++..+.+++..+++++++++++++++... ..        .....                      .+.     . ..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--------~~~~~----------------------~~~-----~-~~  125 (458)
T PRK09029         83 LNPQLPQPLLEELLPSLTLDFALVLEGENT-FS--------ALTSL----------------------HLQ-----L-VE  125 (458)
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hh--------hcccc----------------------ccc-----c-cc
Confidence            999999999999999999999998765422 10        00000                      000     0 00


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.+||+++...+......+     +...+++++...|++|.+++...+.++..
T Consensus       126 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g~~~~~~~l~~  200 (458)
T PRK09029        126 GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSGQGIVWRWLYA  200 (458)
T ss_pred             ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhhhHHHHHHHhC
Confidence            1112234678899999999999999999999999999888766655     67889999999999999998777778999


Q ss_pred             CceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHH
Q 007257          242 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD  321 (611)
Q Consensus       242 G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (611)
                      |+++++.+.  ..++..+  .++|.+..+|+++..+......                                      
T Consensus       201 G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~--------------------------------------  238 (458)
T PRK09029        201 GATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE--------------------------------------  238 (458)
T ss_pred             CceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc--------------------------------------
Confidence            999998764  5566666  4799999999999877642110                                      


Q ss_pred             HHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEe
Q 007257          322 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLE  401 (611)
Q Consensus       322 ~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~  401 (611)
                                 ..+++.+++||+++++.+.+.+... |.++++.||+||++...+.....   ...++|.|++++++++.
T Consensus       239 -----------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~---~~~~~G~~~~~~~~~i~  303 (458)
T PRK09029        239 -----------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD---GLAGVGSPLPGREVKLV  303 (458)
T ss_pred             -----------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC---CCCCCCCCCCCCEEEEe
Confidence                       1379999999999999999998864 99999999999998765543322   12568999999999988


Q ss_pred             ecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcH
Q 007257          402 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE  481 (611)
Q Consensus       402 ~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~  481 (611)
                      +              |||+++|+.++.||+++++.+.....+|||+|||+|++| ||++++.||.+|+|++ +|.+|+|.
T Consensus       304 ~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~-~G~~v~p~  367 (458)
T PRK09029        304 D--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFS-GGEGIQPE  367 (458)
T ss_pred             C--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccceee-CCEEeCHH
Confidence            6              999999999999999999887765678999999999999 9999999999999997 99999999


Q ss_pred             HHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCC
Q 007257          482 YLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLR  558 (611)
Q Consensus       482 ~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  558 (611)
                      +||+.|++||+|.||+|++.++.   +.++++|++....                  +        .++|.++++ ++|+
T Consensus       368 eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~--------~~~l~~~~~-~~l~  420 (458)
T PRK09029        368 EIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA------------------A--------VVNLAEWLQ-DKLA  420 (458)
T ss_pred             HHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc------------------C--------HHHHHHHHH-hhch
Confidence            99999999999999999998766   4788888866321                  1        134455554 7899


Q ss_pred             CcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          559 GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       559 ~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      .|++|..+.+++..      |+|.+||++|+.|+++++..
T Consensus       421 ~~~~P~~~~~~~~~------p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        421 RFQQPVAYYLLPPE------LKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             hccCCeEEEEeccc------ccCcCCCcCHHHHHHHHHhc
Confidence            99999999998765      89999999999999888754

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-58  Score=503.81  Aligned_cols=504  Identities=21%  Similarity=0.268  Sum_probs=384.8

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +|+++|+++|+++.    +     +++||.||.++++++|.+|.+ .|+++|++|+++++|++++++++|||+++|++++
T Consensus        32 ~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v  102 (560)
T PRK08974         32 AVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVV  102 (560)
T ss_pred             HHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence            46789999999875    3     699999999999999999985 7999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcH--HHHHH---------h----hhCC
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKEM---------A----VQTG  145 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~---------~----~~~~  145 (611)
                      |++|.++.+++.++++.+++++++++++....+......  .....++.......  .....         .    ....
T Consensus       103 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (560)
T PRK08974        103 NVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL  180 (560)
T ss_pred             ccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhhcccccccccC
Confidence            999999999999999999999999987544332211110  11122221110000  00000         0    0000


Q ss_pred             CceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecc
Q 007257          146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  225 (611)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  225 (611)
                      ....++.+................++++++++|||||||.||+|.++|.++...+......+..  ......+.++..+|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~p  258 (560)
T PRK08974        181 PDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHPGKELVVTALP  258 (560)
T ss_pred             CCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCCCccEEEEeCc
Confidence            0111222222222111111223467899999999999999999999999998766543322210  01234567889999


Q ss_pred             hhhHHHHHH-HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 007257          226 LAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  302 (611)
Q Consensus       226 ~~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  302 (611)
                      ++|.+++.. .+.++..|+++++...  ++..++..++++++|++.++|+++..+......                   
T Consensus       259 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------  319 (560)
T PRK08974        259 LYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF-------------------  319 (560)
T ss_pred             HHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc-------------------
Confidence            999998765 5556788888777643  788999999999999999999999887642100                   


Q ss_pred             HHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC
Q 007257          303 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  382 (611)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~  382 (611)
                                        .        ...++++|.+++||+++++.+.+.|.+.+|.++++.||+||++..+..+..+.
T Consensus       320 ------------------~--------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~  373 (560)
T PRK08974        320 ------------------Q--------ELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDL  373 (560)
T ss_pred             ------------------c--------cCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCC
Confidence                              0        01124899999999999999999999988999999999999998877665544


Q ss_pred             ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEE
Q 007257          383 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  462 (611)
Q Consensus       383 ~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~  462 (611)
                      ....+++|.|++++++++++ +++  .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++
T Consensus       374 ~~~~~~~G~~~~~~~~~i~~-~~~--~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i  450 (560)
T PRK08974        374 DYYSGSIGLPVPSTEIKLVD-DDG--NEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRI  450 (560)
T ss_pred             cccCCccccCcCCCEEEEEC-CCC--CCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcCCceEEE
Confidence            44457899999999999998 544  456778899999999999999999999999888899999999999999999999


Q ss_pred             EeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHH
Q 007257          463 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  539 (611)
Q Consensus       463 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (611)
                      .||.+|+|++ +|.+++|.+||+.|.++|+|.+++|++.++.   +.++++++..+..         .        .   
T Consensus       451 ~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~---------~--------~---  509 (560)
T PRK08974        451 VDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS---------L--------T---  509 (560)
T ss_pred             EecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC---------C--------C---
Confidence            9999999997 8999999999999999999999999987654   2566666544311         0        1   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       540 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                           .+++.+++. +.|+.++.|..+.++++.      |+|++||++|++|+++..+..
T Consensus       510 -----~~~l~~~l~-~~l~~~~~P~~~~~~~~l------P~t~~GK~~r~~l~~~~~~~~  557 (560)
T PRK08974        510 -----EEELITHCR-RHLTGYKVPKLVEFRDEL------PKSNVGKILRRELRDEARAKV  557 (560)
T ss_pred             -----HHHHHHHHH-hhcccccCCcEEEEhhhC------CCCCCCcEeHHHHHHHHHhhh
Confidence                 123334443 678999999999998665      999999999999999876654

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5.7e-59  Score=499.47  Aligned_cols=458  Identities=18%  Similarity=0.128  Sum_probs=333.0

Q ss_pred             cCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcchhH------HHHhccccccccCccEEEEecC
Q 007257           59 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS  132 (611)
Q Consensus        59 ~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~i~~~~~  132 (611)
                      ++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++...      ..+.... .. .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVV-EA-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhh-hc-ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986421      1111100 00 11122222211


Q ss_pred             CcHHHHHHhhhCCCceeeHHHHHhcccc------cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccc
Q 007257          133 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  206 (611)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~  206 (611)
                      ....    .........+|.++......      .........++++++|+|||||||.||||++||.++..........
T Consensus        79 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPV----AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             Cccc----CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            1000    00000112345555422110      0111112356899999999999999999999999987665444333


Q ss_pred             cccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHH
Q 007257          207 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  284 (611)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~  284 (611)
                      +     ++..+|++++..|++|.+++...+.++..|+++++.+.  ++..+++.|+++++|++.++|+++..|.+.....
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~  229 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA  229 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc
Confidence            3     67788999999999999887767778999999998864  7889999999999999999999998875421000


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc--CCce
Q 007257          285 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL  362 (611)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~--~~~v  362 (611)
                                                         ...        ..+++||.+++||++++++..+++.+.+  ++++
T Consensus       230 -----------------------------------~~~--------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        230 -----------------------------------MEG--------LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             -----------------------------------ccc--------CCchhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                               000        1124899999999999999988887733  4789


Q ss_pred             eeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCc--ccccCCChHhhhhh
Q 007257          363 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES  440 (611)
Q Consensus       363 ~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~--~~gy~~~~~~~~~~  440 (611)
                      ++.||+||++..+...........+++|.|.++++++|+| +++...+.+.++.|||+++||.+  +.||++++. + +.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ce
Confidence            9999999987644332222223347899999999999998 66654444333689999999976  579997653 3 33


Q ss_pred             ccCC----------ccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhc-CcCcceEEEEecCCC----C
Q 007257          441 IIDG----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIEDIWVYGDSLK----S  505 (611)
Q Consensus       441 ~~~g----------~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~p~V~~~~v~~~~~~----~  505 (611)
                      |.+|          ||+|||+|++|+||+|++.||.||+|++ +|++|+|.|||++|.+ ||+|.||+|++.++.    +
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~  422 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPE  422 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCce
Confidence            4344          6899999999999999999999999996 9999999999999986 999999999998764    3


Q ss_pred             eEEEEE---ecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCcccc
Q 007257          506 MLVAVV---VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA  582 (611)
Q Consensus       506 ~~~a~v---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~  582 (611)
                      .++|+|   +++++..       ..        +..+    +.+.+++.++ ++|+.+..|..|.++++.      |+|+
T Consensus       423 ~~~a~v~~~v~~~~~~-------~~--------~~~~----l~~~~~~~l~-~~l~~~~~~~~i~~v~~l------P~t~  476 (499)
T PLN03051        423 LLVIFLVLGEEKKGFD-------QA--------RPEA----LQKKFQEAIQ-TNLNPLFKVSRVKIVPEL------PRNA  476 (499)
T ss_pred             EEEEEEEcceeccccc-------cc--------chHH----HHHHHHHHHH-hhcCCccCCceEEEcCCC------CCCC
Confidence            688888   6654310       00        1223    3334444443 568876667778888665      9999


Q ss_pred             ccccchHHHHHHHHHHHH
Q 007257          583 TLKKKRNKLLIYYQVEID  600 (611)
Q Consensus       583 ~GKv~R~~l~~~~~~~~~  600 (611)
                      +||++|++|++.+.+.+.
T Consensus       477 ~GKi~r~~L~~~~~~~~~  494 (499)
T PLN03051        477 SNKLLRRVLRDQLKKELS  494 (499)
T ss_pred             CccHHHHHHHHHHHHhhc
Confidence            999999999988877654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.8e-58  Score=543.47  Aligned_cols=486  Identities=18%  Similarity=0.172  Sum_probs=376.8

Q ss_pred             ccccCC-CCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~p-d~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +++++| +++++.+.   ++     +++||+||.++++++|+.|++ |+++||+|+++++|+++++++++||+++|++++
T Consensus       640 ~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v  710 (1140)
T PRK06814        640 AAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVPA  710 (1140)
T ss_pred             HHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEE
Confidence            345665 56776653   23     689999999999999999975 999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHh-ccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  159 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (611)
                      |+++.++.+++.+++++++++++++++....... .......+....++.+++....        ......+.+..... 
T Consensus       711 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~-  781 (1140)
T PRK06814        711 MINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQ--------IGLADKIKGLLAGR-  781 (1140)
T ss_pred             EcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhcc--------CChHHHHHHHhhcc-
Confidence            9999999999999999999999999876543221 0000111222334444322100        00000111111111 


Q ss_pred             ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHH
Q 007257          160 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYF  238 (611)
Q Consensus       160 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~  238 (611)
                      ..........++++++++|||||||.||+|.++|+++...+......+     ++..+|++++.+|++|.+++.. .+.+
T Consensus       782 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~~  856 (1140)
T PRK06814        782 FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFHSFGLTGGLVLP  856 (1140)
T ss_pred             CCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHHHHHHHHHHHHH
Confidence            011111135789999999999999999999999999988887766655     7788999999999999999854 6668


Q ss_pred             hhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          239 FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       239 l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      +..|+++++.+.  +...+.+.++++++|+++++|++++.+.+...                                  
T Consensus       857 l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----------------------------------  902 (1140)
T PRK06814        857 LLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH----------------------------------  902 (1140)
T ss_pred             HHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----------------------------------
Confidence            999999998864  66778899999999999999999887754210                                  


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCe
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS  396 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~  396 (611)
                                   ...++++|.+++||+++++++.+.+.+.+|+++++.||+||++.......+.. ...+++|+|.|++
T Consensus       903 -------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~g~  968 (1140)
T PRK06814        903 -------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-NKAGTVGRLLPGI  968 (1140)
T ss_pred             -------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-CCCCcCCccCCCC
Confidence                         01124899999999999999999999989999999999999998776554332 3347899999999


Q ss_pred             eEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhh-hhccCCccccCceEEEccCCeEEEEeccCCeEEcCCc
Q 007257          397 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG  475 (611)
Q Consensus       397 ~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G  475 (611)
                      ++++.+. ++      .++.|||+++|++++.||+++++... +...+|||+|||+|++|+||++++.||.||+|++ +|
T Consensus       969 ~~~~~~~-~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~-~G 1040 (1140)
T PRK06814        969 EYRLEPV-PG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKI-AG 1040 (1140)
T ss_pred             eEEEeec-CC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeee-CC
Confidence            9999873 21      24679999999999999998765332 2235899999999999999999999999999997 99


Q ss_pred             eecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257          476 EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  552 (611)
Q Consensus       476 ~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  552 (611)
                      ++|+|.+||++|.+||.|.+++|++.++.   +.+++++...+ .                  +        .+++.+++
T Consensus      1041 ~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~-~------------------~--------~~~l~~~~ 1093 (1140)
T PRK06814       1041 EMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASD-A------------------T--------RAAFLAHA 1093 (1140)
T ss_pred             EEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCC-c------------------C--------HHHHHHHH
Confidence            99999999999999999999999997765   35555543211 1                  1        12344455


Q ss_pred             HhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          553 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       553 ~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                      ++..++.|++|..++++++.      |+|++||++|++|++++++.+
T Consensus      1094 ~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1094 KAAGASELMVPAEIITIDEI------PLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             HHcCCCcccCCcEEEEecCc------CCCCCCCCcHHHHHHHHHHhh
Confidence            44569999999999998765      999999999999999877654

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-58  Score=498.54  Aligned_cols=496  Identities=24%  Similarity=0.288  Sum_probs=371.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .++++||++|+++.   +      ..+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        27 ~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vp   97 (545)
T PRK08162         27 AAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNT   97 (545)
T ss_pred             HHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEec
Confidence            46789999999875   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++..+++.+++++++++.+....+..... ..+..+ .+.++.....   ..........++.++.......
T Consensus        98 l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  172 (545)
T PRK08162         98 LNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGPK-PLVIDVDDPE---YPGGRFIGALDYEAFLASGDPD  172 (545)
T ss_pred             cccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCCc-eEEEecCccc---cccCCCcccccHHHHhccCCcc
Confidence            9999999999999999999999999876655433221 111111 1222211100   0000111233455555432111


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      .....+...+++++++|||||||.||+|+++|.++...+......+     .+..++++++.+|++|.+++...+...+.
T Consensus       173 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~~~~~~~~~~  247 (545)
T PRK08162        173 FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGWCFPWTVAAR  247 (545)
T ss_pred             ccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhHHHHHHHHHH
Confidence            1111123456789999999999999999999998766655443333     56778899999999999988765554444


Q ss_pred             CceEEEec-CChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYH-GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |++.++.. .++..+++.++++++|++.++|+++..|++......                                   
T Consensus       248 ~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------  292 (545)
T PRK08162        248 AGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR-----------------------------------  292 (545)
T ss_pred             ccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc-----------------------------------
Confidence            55544444 499999999999999999999999998865211100                                   


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC----------ccccCccC
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----------MCMVGTAG  390 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~----------~~~~~~~G  390 (611)
                                ..+.+.+.++++|+.++++..+.+.+. +.++++.||+||+++.+..+....          .....+.|
T Consensus       293 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (545)
T PRK08162        293 ----------AGIDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG  361 (545)
T ss_pred             ----------cCCccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccchhhccCCCC
Confidence                      000245667889999999999998874 899999999999976655543211          01123456


Q ss_pred             CCcc-CeeEEEeecCCCCCCCCCC-C-CCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccC
Q 007257          391 PVSV-YSELRLEEVPEMGYSPLDD-P-PCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       391 ~~~~-~~~v~i~~~~~~~~~~~~~-~-~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      .+.+ +..++++| +++. .+++. | +.|||+++|+.++.||+++++.+...|.+|||+|||+|++|+||.+++.||.+
T Consensus       362 ~~~~~~~~~~i~d-~~~~-~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~  439 (545)
T PRK08162        362 VRYPLQEGVTVLD-PDTM-QPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSK  439 (545)
T ss_pred             cccCCcceEEEEc-CCCC-cccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccEEEEeccc
Confidence            5544 33567776 3332 33332 3 46999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      |++++ +|.+|+|.+||+.|.++|+|.+++|++.++.   +.+.+++++.++..        .        +        
T Consensus       440 ~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~--------~--------~--------  494 (545)
T PRK08162        440 DIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGAS--------A--------T--------  494 (545)
T ss_pred             ceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCC--------C--------C--------
Confidence            99996 9999999999999999999999999987644   47888888775320        0        1        


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .+++.++++ +.|+.+++|+.+++. +      +|+|++||++|+.|+++++.
T Consensus       495 ~~~l~~~~~-~~l~~~~~P~~~~~~-~------iP~t~~gK~~r~~l~~~~~~  539 (545)
T PRK08162        495 EEEIIAHCR-EHLAGFKVPKAVVFG-E------LPKTSTGKIQKFVLREQAKS  539 (545)
T ss_pred             HHHHHHHHH-HhcccccCCcEEEec-c------cCCCCCcCCcHHHHHHHHhh
Confidence            123444443 678999999988753 3      38999999999999988755

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.4e-58  Score=492.38  Aligned_cols=480  Identities=21%  Similarity=0.234  Sum_probs=379.9

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEE
Q 007257           26 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  105 (611)
Q Consensus        26 ~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~  105 (611)
                      +.+||.||.+.+.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHhcccccccc-CccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCC
Q 007257          106 QDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSG  184 (611)
Q Consensus       106 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG  184 (611)
                      ++........... ..+ ....++......           .....|++......    .......++.++++|||||||
T Consensus        90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG  153 (502)
T PRK08276         90 SAALADTAAELAA-ELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTG  153 (502)
T ss_pred             ccchhhHHHHHhh-hccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCC
Confidence            8876554432211 112 334444432211           11233444432211    111234567899999999999


Q ss_pred             CCceeeeccHhHHHhhh--hcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecC-ChHHHHHHHhh
Q 007257          185 DPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLME  261 (611)
Q Consensus       185 ~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~  261 (611)
                      .||+|.++|.++.....  ...... ........++++++..|++|..++...+.++..|+++++.+. ++..+++.+++
T Consensus       154 ~PK~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  232 (502)
T PRK08276        154 RPKGIKRPLPGLDPDEAPGMMLALL-GFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIER  232 (502)
T ss_pred             CCceEEEccCCcchhhhhHHhhhhh-hhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHH
Confidence            99999999887654332  110100 001123467899999999999998887788999999988876 89999999999


Q ss_pred             hcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEE
Q 007257          262 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS  341 (611)
Q Consensus       262 ~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~  341 (611)
                      +++|++.++|+++..+.......                                   ...++        ++++|.+++
T Consensus       233 ~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~--------~~~lr~i~~  269 (502)
T PRK08276        233 YRVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYD--------VSSLRVAIH  269 (502)
T ss_pred             hCCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCC--------cccceEEEe
Confidence            99999999999998876421100                                   00011        248999999


Q ss_pred             ecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEE
Q 007257          342 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV  421 (611)
Q Consensus       342 ~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v  421 (611)
                      ||+++++++.+++.+.+|.++++.||+||+++++...........+++|.|+ +.++++.+ +++  .+++.|+.|||++
T Consensus       270 ~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~--~~~~~g~~Gel~v  345 (502)
T PRK08276        270 AAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDG--NELPPGEIGTVYF  345 (502)
T ss_pred             cCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCC--CCCcCCCceEEEE
Confidence            9999999999999998899999999999999876665544334457899999 78999987 554  4566778999999


Q ss_pred             ecCCcccccCCChHhhhhhcc-CCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEe
Q 007257          422 RGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG  500 (611)
Q Consensus       422 ~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~  500 (611)
                      +|+.++.||+++++.+...+. +|||+|||+++++++|.+++.||.||++++ +|.+|++.+||..|.++|+|.+|+|++
T Consensus       346 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~  424 (502)
T PRK08276        346 EMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFG  424 (502)
T ss_pred             ECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEe
Confidence            999999999999999999984 599999999999999999999999999996 999999999999999999999999999


Q ss_pred             cCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCC
Q 007257          501 DSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMER  577 (611)
Q Consensus       501 ~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~  577 (611)
                      ..+.   +.+++++++++...                 ...++.    +.+.+.++ .+|+.++.|..++++++.     
T Consensus       425 ~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~----~~i~~~~~-~~l~~~~~p~~i~~~~~l-----  477 (502)
T PRK08276        425 VPDEEMGERVKAVVQPADGAD-----------------AGDALA----AELIAWLR-GRLAHYKCPRSIDFEDEL-----  477 (502)
T ss_pred             CCCcccCceEEEEEEECCCCC-----------------CChhhH----HHHHHHHH-hhccCCCCCcEEEEecCC-----
Confidence            7755   37999999876420                 111222    33444443 679999999999998665     


Q ss_pred             CccccccccchHHHHHHHHHH
Q 007257          578 DLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       578 ~P~t~~GKv~R~~l~~~~~~~  598 (611)
                       |+|++||++|++|++.|-..
T Consensus       478 -P~t~~GKi~r~~L~~~~~~~  497 (502)
T PRK08276        478 -PRTPTGKLYKRRLRDRYWEG  497 (502)
T ss_pred             -CCCcccchhHHHHHHHHHhh
Confidence             99999999999999997554

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.4e-59  Score=597.32  Aligned_cols=478  Identities=18%  Similarity=0.163  Sum_probs=390.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      ..+||+||+++++++|++|.+.|+++|++|++++++++++++++||++++|++++|
T Consensus      3729 ~~~~~p~~~Av~~~---~------~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vp 3799 (4334)
T PRK05691       3729 QVAAHPQRIAASCL---D------QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLP 3799 (4334)
T ss_pred             HHHhCCCceEEEcC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeC
Confidence            57899999999987   4      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccc-cCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      ++|.++.+++.++++++++++++++............... .....++..++.                     ......
T Consensus      3800 ld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 3858 (4334)
T PRK05691       3800 LDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEV---------------------QAGEVA 3858 (4334)
T ss_pred             CCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeeccc---------------------cccccc
Confidence            9999999999999999999999998865432211110000 001111111111                     000001


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR  240 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~  240 (611)
                      .........+++++|++|||||||.||||+++|+++.+.+......+     +++..++++...++++..+....+.++.
T Consensus      3859 ~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd~s~~~~~~~l~ 3933 (4334)
T PRK05691       3859 SHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFDISVWQFLAAPL 3933 (4334)
T ss_pred             ccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchhHHHHHHHHHHh
Confidence            11122345789999999999999999999999999999988877766     7899999999999999999988999999


Q ss_pred             cCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          241 RGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       241 ~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      .|+++++++.    ++..+++.++++++|++.++|+++..++.....                                 
T Consensus      3934 ~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~--------------------------------- 3980 (4334)
T PRK05691       3934 FGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ--------------------------------- 3980 (4334)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc---------------------------------
Confidence            9999999865    788999999999999999999999887542110                                 


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC---ccccCccCCC
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMVGTAGPV  392 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~G~~  392 (611)
                                     .+++||.+++||+++++++.+.|.+.+ ++.++|.||+||++..++......   .....++|+|
T Consensus      3981 ---------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p 4045 (4334)
T PRK05691       3981 ---------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSP 4045 (4334)
T ss_pred             ---------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCc
Confidence                           114899999999999999999987765 789999999999998776543222   1122469999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc--------CCccccCceEEEccCCeEEEEe
Q 007257          393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILPNGVVKIID  464 (611)
Q Consensus       393 ~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~dG~l~~~G  464 (611)
                      ++++.+.++| ++.  .+++.|..|||+|+|++++.||+++|+.|+++|.        ++||+|||+|++++||.++++|
T Consensus      4046 ~~~~~~~v~d-~~~--~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~G 4122 (4334)
T PRK05691       4046 TDNNRLYLLD-EAL--ELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVG 4122 (4334)
T ss_pred             cCCCEEEEEC-CCC--CCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEec
Confidence            9999999997 444  4566778999999999999999999999999982        4699999999999999999999


Q ss_pred             ccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecC--CCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHH
Q 007257          465 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  542 (611)
Q Consensus       465 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (611)
                      |.|++||+ +|++|++.|||+.|+++|+|.+|+|+...  ..+.++|++++.....                 ...+   
T Consensus      4123 R~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~-----------------~~~~--- 4181 (4334)
T PRK05691       4123 RIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL-----------------AQGA--- 4181 (4334)
T ss_pred             ccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc-----------------cchH---
Confidence            99999998 99999999999999999999999987533  2358999998765421                 1111   


Q ss_pred             HHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          543 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       543 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                       ..+.|++.++ +.||.|++|..++.+++.      |+|++||++|++|.+.
T Consensus      4182 -~~~~l~~~l~-~~Lp~ymvP~~~~~~~~l------P~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4182 -LLERIKQRLR-AELPDYMVPLHWLWLDRL------PLNANGKLDRKALPAL 4225 (4334)
T ss_pred             -HHHHHHHHHH-hhCChhhcCcceeecccC------CCCCCCcccHhhcCCC
Confidence             2334555554 789999999999988665      9999999999999764

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-57  Score=491.93  Aligned_cols=481  Identities=21%  Similarity=0.224  Sum_probs=377.0

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEE
Q 007257           26 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  105 (611)
Q Consensus        26 ~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~  105 (611)
                      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.++.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHhccccccccCccEEEEecCCcHHHHH--H---hhhCCCceeeHHHHHhcccccCCcCCCCCCCCeEEEEEec
Q 007257          106 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKE--M---AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS  180 (611)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  180 (611)
                      +......+.+...    ....++...........  .   ..........|+++.....    ......++++++++|||
T Consensus        90 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         90 HADLLHGLASALP----AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             ccchhhhhhhhhh----cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence            8876654432221    11111111111000000  0   0001112334555442211    12233578999999999


Q ss_pred             CCCCCCceeeeccHhHHHh---hhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecC-ChHHHH
Q 007257          181 GTSGDPKGVVLTHETIATF---VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR  256 (611)
Q Consensus       181 GTTG~pK~v~~s~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~  256 (611)
                      ||||.||+|.++|.+....   .......+     ++..++++++..|++|..+....+.++..|+++++.+. ++..++
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  236 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL  236 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence            9999999999877654332   22222333     67888999999999998887777777888999988776 899999


Q ss_pred             HHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCce
Q 007257          257 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  336 (611)
Q Consensus       257 ~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (611)
                      +.++++++|++.++|+++..++.......                                           +...++++
T Consensus       237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------------------~~~~~~~l  273 (509)
T PRK12406        237 QLIERHRITHMHMVPTMFIRLLKLPEEVR-------------------------------------------AKYDVSSL  273 (509)
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCchhhc-------------------------------------------ccCCCCce
Confidence            99999999999999999988764211100                                           00112489


Q ss_pred             eEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCC
Q 007257          337 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  416 (611)
Q Consensus       337 ~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~  416 (611)
                      +.+++||+++++++.+++.+.++..+++.||+||++.+++.+.......++++|.+.+++++++++ +++  .+++.++.
T Consensus       274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~--~~~~~g~~  350 (509)
T PRK12406        274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDG--RPLPQGEI  350 (509)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCC--CCCCCCCc
Confidence            999999999999999999998899999999999999877665444444557899999999999998 554  45667889


Q ss_pred             cEEEEecCCccc-ccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcce
Q 007257          417 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED  495 (611)
Q Consensus       417 Gel~v~~~~~~~-gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~  495 (611)
                      |||+++|++++. +|+++++.+...+.+|||+|||++++++||.+++.||.+|+|++ +|.+|+|.+||+.|+++|+|.+
T Consensus       351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~  429 (509)
T PRK12406        351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD  429 (509)
T ss_pred             eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence            999999998875 89999998888788999999999999999999999999999996 9999999999999999999999


Q ss_pred             EEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCC
Q 007257          496 IWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRP  572 (611)
Q Consensus       496 ~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~  572 (611)
                      +++++.++.   +.+++++++.+...        .        .        .+++.+.++ ..++.|++|..+.++++.
T Consensus       430 ~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~--------~~~l~~~l~-~~l~~~~~P~~i~~~~~i  484 (509)
T PRK12406        430 CAVFGIPDAEFGEALMAVVEPQPGAT--------L--------D--------EADIRAQLK-ARLAGYKVPKHIEIMAEL  484 (509)
T ss_pred             EEEEeeeccccCceeEEEEEECCCCC--------C--------C--------HHHHHHHHH-HhcccCCCCcEEEEeccC
Confidence            999987654   36888888765310        0        1        123344443 679999999999988665


Q ss_pred             CCCCCCccccccccchHHHHHHHHH
Q 007257          573 FDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       573 ~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                            |+|++||++|++|++.|.+
T Consensus       485 ------P~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        485 ------PREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             ------CCCCccchhHHHHHHHHHh
Confidence                  9999999999999887644

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-57  Score=493.49  Aligned_cols=495  Identities=20%  Similarity=0.211  Sum_probs=383.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .|+++||++|+++.    +     +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++++
T Consensus        12 ~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~   82 (533)
T PRK07798         12 VADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN   82 (533)
T ss_pred             HHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence            57899999999885    3     69999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++++++++++++......+.+.. ...+..+.++.+++.....      ......+++++.......
T Consensus        83 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  155 (533)
T PRK07798         83 VNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVL-PRLPKLRTLVVVEDGSGND------LLPGAVDYEDALAAGSPE  155 (533)
T ss_pred             cCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHh-ccCCCccEEEEecCCcccc------cCCccccHHHHHhccCCc
Confidence            999999999999999999999999987665554332 2234555566665432110      011234566665443211


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhccccccc----ccCCC------CCCcEEEEecchhhHHH
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FEDKM------TVDDVYLSFLPLAHILD  231 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~----~~~~~------~~~~~~l~~~p~~~~~g  231 (611)
                       ..... ..++.++++|||||||.||+|+++|.++..........+..    ....+      ..+++++...|++|..+
T Consensus       156 -~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~  233 (533)
T PRK07798        156 -RDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAG  233 (533)
T ss_pred             -CCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhh
Confidence             11112 23455799999999999999999999987655432221100    00011      56789999999999999


Q ss_pred             HHHHHHHhhcCceEEEec--C-ChHHHHHHHhhhcCeEEecchHHHHH-HHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007257          232 RVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDALYKYKLAWM  307 (611)
Q Consensus       232 ~~~~~~~l~~G~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (611)
                      +...+.++..|+++++.+  . ++..+++.++++++|++.++|..+.. +...+. .                       
T Consensus       234 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~-----------------------  289 (533)
T PRK07798        234 QWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A-----------------------  289 (533)
T ss_pred             HHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c-----------------------
Confidence            988888999999999998  4 89999999999999999999876643 322111 0                       


Q ss_pred             hhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCcccc
Q 007257          308 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV  386 (611)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~  386 (611)
                                          .....+++++.+++||+++++++.+++.+.+ +.++++.||+||++...........   
T Consensus       290 --------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~---  346 (533)
T PRK07798        290 --------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGA---  346 (533)
T ss_pred             --------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCCC---
Confidence                                0011225899999999999999999999988 7899999999999766554432221   


Q ss_pred             CccC--CCccCeeEEEeecCCCCCCCCCCCCC--cEEEEecCCcccccCCChHhhhhhcc----CCccccCceEEEccCC
Q 007257          387 GTAG--PVSVYSELRLEEVPEMGYSPLDDPPC--GEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG  458 (611)
Q Consensus       387 ~~~G--~~~~~~~v~i~~~~~~~~~~~~~~~~--Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~dG  458 (611)
                      ...|  .+.++..+++.+ +++.  +++.++.  |+|+ +++.++.||+++++.+.+.|.    ++||+|||++++|++|
T Consensus       347 ~~~g~~~~~~~~~~~i~~-~~~~--~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g  422 (533)
T PRK07798        347 VHTGGPRFTIGPRTVVLD-EDGN--PVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADG  422 (533)
T ss_pred             ccCCCCccCCCceEEEEC-CCCC--CCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCC
Confidence            2233  778899999998 6655  4444545  6665 566889999999999998883    2599999999999999


Q ss_pred             eEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHh
Q 007257          459 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  535 (611)
Q Consensus       459 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~  535 (611)
                      ++++.||.+|+++. +|.+|+|.+||++|.++|+|.+++|++.++.   +.+.++++++++..        .        
T Consensus       423 ~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------  485 (533)
T PRK07798        423 TITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGAR--------P--------  485 (533)
T ss_pred             cEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCC--------C--------
Confidence            99999999999996 9999999999999999999999999997654   46888888765320        0        


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          536 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       536 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +        .++|.+.++ +.|+.|++|..++++++.      |+|++||++|++|+++.++
T Consensus       486 ~--------~~~l~~~l~-~~l~~~~~P~~i~~~~~i------P~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        486 D--------LAELRAHCR-SSLAGYKVPRAIWFVDEV------QRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             C--------HHHHHHHHh-hhcccCCCCeEEEEcccC------CCCCcchhhHHHHhhhhcc
Confidence            1        123444443 679999999999988765      9999999999999998765

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.4e-57  Score=480.19  Aligned_cols=433  Identities=25%  Similarity=0.308  Sum_probs=355.2

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcch
Q 007257           29 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  108 (611)
Q Consensus        29 Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~  108 (611)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             hHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCce
Q 007257          109 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  188 (611)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~  188 (611)
                      .....             + .                  ...+..+................+++++++|||||||.||+
T Consensus        81 ~~~~~-------------~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD-------------F-Q------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc-------------e-e------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110             0 0                  00111111111111111223457889999999999999999


Q ss_pred             eeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecCChHHHHHHHhhhcCeEEe
Q 007257          189 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA  268 (611)
Q Consensus       189 v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~l~  268 (611)
                      |.++|.++...+......+     ++..+|++++..|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence            9999999998888776666     788899999999999999988778889999999998653 4899999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCH
Q 007257          269 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  348 (611)
Q Consensus       269 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~  348 (611)
                      ++|+++..+.+....                                                 .++++.++++|+++++
T Consensus       203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence            999999887652110                                                 0389999999999999


Q ss_pred             HHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCccc
Q 007257          349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  428 (611)
Q Consensus       349 ~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~  428 (611)
                      ++.+++.. +|+++++.||+||+++..+...........++|.+++++++++.. ++.       ++.|||+++|+.++.
T Consensus       234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence            99998876 499999999999998866654443322223589999999999854 222       157999999999999


Q ss_pred             ccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---C
Q 007257          429 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---S  505 (611)
Q Consensus       429 gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~  505 (611)
                      ||+++++.+...+.+|||+|||++++++||.+++.||.+|++++ +|.+|++.+||++|.++|.|.+++|++.++.   .
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  383 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQ  383 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCC
Confidence            99998888887778899999999999999999999999999997 9999999999999999999999999997754   3


Q ss_pred             eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccc
Q 007257          506 MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLK  585 (611)
Q Consensus       506 ~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GK  585 (611)
                      .+.++++++++.                  +.        +.+.++++ +.|+.+++|..++++++.      |+|++||
T Consensus       384 ~~~~~v~~~~~~------------------~~--------~~l~~~l~-~~l~~~~~p~~i~~~~~i------P~t~~GK  430 (436)
T TIGR01923       384 VPVAYIVSESDI------------------SQ--------AKLIAYLT-EKLAKYKVPIAFEKLDEL------PYNASGK  430 (436)
T ss_pred             eeEEEEEECCCC------------------CH--------HHHHHHHH-HhhhCCCCCeEEEEecCC------CCCCCCc
Confidence            677888776532                  11        23333443 678999999999998665      9999999


Q ss_pred             cchHHH
Q 007257          586 KKRNKL  591 (611)
Q Consensus       586 v~R~~l  591 (611)
                      ++|++|
T Consensus       431 ~~r~~L  436 (436)
T TIGR01923       431 ILRNQL  436 (436)
T ss_pred             eecccC
Confidence            999864

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.6e-58  Score=587.97  Aligned_cols=469  Identities=21%  Similarity=0.234  Sum_probs=386.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +.+||+||.++++++|++|.+.|+++|++|++++++++++++++||++++|++++|
T Consensus      1140 ~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~vp 1210 (4334)
T PRK05691       1140 QARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVP 1210 (4334)
T ss_pred             HHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            57889999999986   4      58999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++++++++++++......+...     ... ..+.++....             ..+        ..
T Consensus      1211 ld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~~-------------~~~--------~~ 1263 (4334)
T PRK05691       1211 LDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLHL-------------DSW--------PS 1263 (4334)
T ss_pred             cCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeeccccc-------------ccc--------CC
Confidence            99999999999999999999999987654433110     000 1111111100             000        01


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||||.++|+++.+.+......+     ++..++++++..|++|..++..++.++..
T Consensus      1264 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~s~~~~~~~L~~ 1338 (4334)
T PRK05691       1264 QAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDVSVWECFWPLIT 1338 (4334)
T ss_pred             CCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHHHHHHHHHhC
Confidence            1112234678999999999999999999999999999888776666     78899999999999999998888889999


Q ss_pred             CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      |+++++.+.    ++..+++.++++++|++.++|++++.+.+....                                  
T Consensus      1339 G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---------------------------------- 1384 (4334)
T PRK05691       1339 GCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA---------------------------------- 1384 (4334)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc----------------------------------
Confidence            999999853    889999999999999999999999887542100                                  


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccC-CCccccCccCCCccC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVY  395 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~-~~~~~~~~~G~~~~~  395 (611)
                                   ..+++||.+++||+++++++.+.|.+.+ ++.++|.||+||++..++.... .......++|+|+++
T Consensus      1385 -------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~ 1451 (4334)
T PRK05691       1385 -------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGN 1451 (4334)
T ss_pred             -------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCC
Confidence                         0124899999999999999999998877 6899999999999876654322 122234689999999


Q ss_pred             eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc--------CCccccCceEEEccCCeEEEEeccC
Q 007257          396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~--------~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      ++++|+| +++  .+++.|+.|||+|+|++++.||+++++.+.+.|.        .+||+|||+|++++||.++++||.|
T Consensus      1452 ~~~~i~d-~~~--~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d 1528 (4334)
T PRK05691       1452 VLCRVLD-AEL--NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLD 1528 (4334)
T ss_pred             CEEEEEC-CCC--CCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccC
Confidence            9999998 554  4567788999999999999999999999999883        2499999999999999999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  545 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (611)
                      ++||+ +|++|+|.|||++|.+||+|.+|+|+...+.  +.++|+++...+..        .        .        .
T Consensus      1529 ~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~--------~--------~--------~ 1583 (4334)
T PRK05691       1529 QQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQE--------A--------E--------A 1583 (4334)
T ss_pred             cEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCC--------C--------C--------H
Confidence            99998 8999999999999999999999999975533  57899988765320        0        0        1


Q ss_pred             HHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          546 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       546 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      +.|+++++ ..||.|++|..++.+++.      |+|++||++|++|.+
T Consensus      1584 ~~l~~~l~-~~Lp~y~vP~~~~~~~~l------P~t~~GKidr~~L~~ 1624 (4334)
T PRK05691       1584 ERLKAALA-AELPEYMVPAQLIRLDQM------PLGPSGKLDRRALPE 1624 (4334)
T ss_pred             HHHHHHHH-HhCccccCCcEEEEcccc------CCCCCCCcChhhcCc
Confidence            23445554 789999999999988665      999999999999965

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.3e-57  Score=492.25  Aligned_cols=500  Identities=17%  Similarity=0.185  Sum_probs=360.4

Q ss_pred             ccccCCCCCceeeeccccC---CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCE
Q 007257            2 SVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI   78 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~---~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   78 (611)
                      +|..+||++|+++.   +.   ..+..+++||.||.+++.++|++|.+.| .+||+|+++++|++++++++|||+++|++
T Consensus        10 ~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~~G~v   85 (578)
T PRK05850         10 RASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQAGLI   85 (578)
T ss_pred             HHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHHcCce
Confidence            57789999999875   31   1233579999999999999999999999 68999999999999999999999999999


Q ss_pred             EeeCCC---CCChhHHHHHHhhcCccEEEEcchhHHHHhcccccc-ccCccEEEEecCCcHHHHHHhhhCCCceeeHHHH
Q 007257           79 CVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  154 (611)
Q Consensus        79 ~~~l~~---~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (611)
                      ++|+++   .++.+++.++|+.++++++++++.....+....... ......++..+...                   +
T Consensus        86 ~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~  146 (578)
T PRK05850         86 AVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLD-------------------L  146 (578)
T ss_pred             EEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccc-------------------c
Confidence            999997   457889999999999999999987665443211100 00111122221100                   0


Q ss_pred             HhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhccccc-ccccCCCCCCcEEEEecchhhHHHHH
Q 007257          155 LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL-DQFEDKMTVDDVYLSFLPLAHILDRV  233 (611)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~g~~  233 (611)
                      ..   ..........++++++++|||||||.||+|.++|.++...+......+ .........++++++..|++|..|+.
T Consensus       147 ~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~  223 (578)
T PRK05850        147 DS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLV  223 (578)
T ss_pred             cc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhH
Confidence            00   000112234678999999999999999999999999987765543221 10011145678999999999999987


Q ss_pred             H-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 007257          234 I-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIH-EGIKKALEELRPLRRRIFDALYKYKLAW  306 (611)
Q Consensus       234 ~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (611)
                      . .+.+++.|+++++.+.     ++..+++.+++++++++ .+|.++..+. ......  .                   
T Consensus       224 ~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~--~-------------------  281 (578)
T PRK05850        224 LGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD--D-------------------  281 (578)
T ss_pred             HHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--h-------------------
Confidence            6 6677999999998863     68999999999999865 5565543332 111000  0                   


Q ss_pred             HhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC------CceeeccccCCCCCceeeccC
Q 007257          307 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPTTVCFP  380 (611)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~g~~~~~~~~  380 (611)
                                   ...        ..++++|.+++||+++++++.++|.+.++      ..+++.||+||++..+.....
T Consensus       282 -------------~~~--------~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  340 (578)
T PRK05850        282 -------------MAG--------LDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREP  340 (578)
T ss_pred             -------------hcC--------cchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCC
Confidence                         000        01148999999999999999999988762      369999999998865543221


Q ss_pred             CCc------------------------cccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHh
Q 007257          381 DEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL  436 (611)
Q Consensus       381 ~~~------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~  436 (611)
                      ...                        ....++|.|. +.++++++ +++ ..+++.|+.|||+|+|++++.||+++++.
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~  417 (578)
T PRK05850        341 GQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDT-CIECPAGTVGEIWVHGDNVAAGYWQKPEE  417 (578)
T ss_pred             CCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCC-CcCCCCCCEEEEEEecCcccccccCChhh
Confidence            110                        0011334443 57888887 433 35567889999999999999999999999


Q ss_pred             hhhhcc------------CCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC
Q 007257          437 TRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK  504 (611)
Q Consensus       437 ~~~~~~------------~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~  504 (611)
                      +++.|.            +|||+|||+|+++ ||++++.||.+|+|++ +|++|+|.+||++|.+||.+ +++|++.++.
T Consensus       418 t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~  494 (578)
T PRK05850        418 TERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-RVAAISVPDD  494 (578)
T ss_pred             hHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-cEEEEEecCC
Confidence            998883            4799999999997 9999999999999997 99999999999999999995 4777776654


Q ss_pred             --CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCcccc
Q 007257          505 --SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA  582 (611)
Q Consensus       505 --~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~  582 (611)
                        +.++|+|++++...        ...      ........+.+.+...+. .  +....|..+.+++.    +.+|+|+
T Consensus       495 ~~~~~~a~v~~~~~~~--------~~~------~~~~~~~~l~~~v~~~l~-~--~~~~~~~~~~~~~~----~~iP~t~  553 (578)
T PRK05850        495 GTEKLVAIIELKKRGD--------SDE------EAMDRLRTVKREVTSAIS-K--SHGLSVADLVLVAP----GSIPITT  553 (578)
T ss_pred             CceEEEEEEEeccccC--------cch------hhhhhHHHHHHHHHHHHH-H--HhCCCceEEEEeCC----CCcCCCC
Confidence              47889988775421        000      000123344444444332 1  11234666777641    3469999


Q ss_pred             ccccchHHHHHHHHH
Q 007257          583 TLKKKRNKLLIYYQV  597 (611)
Q Consensus       583 ~GKv~R~~l~~~~~~  597 (611)
                      +||++|+++++.|++
T Consensus       554 ~GKi~R~~l~~~~~~  568 (578)
T PRK05850        554 SGKIRRAACVEQYRQ  568 (578)
T ss_pred             CchHHHHHHHHHHHc
Confidence            999999999999866

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-56  Score=511.39  Aligned_cols=478  Identities=15%  Similarity=0.124  Sum_probs=352.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|
T Consensus       456 ~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vp  526 (994)
T PRK07868        456 QARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVL  526 (994)
T ss_pred             HHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence            57889999999875   3      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.   .++.++++.++++++|+++.....+...       ...+++++.......  ..........++++.......
T Consensus       527 l~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  594 (994)
T PRK07868        527 MPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDL--DLPDDADVIDMEKIDPDAVEL  594 (994)
T ss_pred             eCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccc--cCCcchhhhhhhhcCcccccC
Confidence            9985   6899999999999999987766544221       123444432210000  000000001111110000000


Q ss_pred             C--CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHH-
Q 007257          162 E--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-  238 (611)
Q Consensus       162 ~--~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~-  238 (611)
                      +  ....+..++++++++|| ||||.||++.++|.++..........+     .+..+|++++..|++|.+++...+.+ 
T Consensus       595 ~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~h~~gl~~~l~~~  668 (994)
T PRK07868        595 PGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLHHESGLLVSLGGA  668 (994)
T ss_pred             CcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChHHHhHHHHHHHHH
Confidence            0  01112246899999999 577777777778766554433333333     67889999999999999999876555 


Q ss_pred             hhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          239 FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       239 l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      +..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....                                 
T Consensus       669 l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~---------------------------------  715 (994)
T PRK07868        669 VVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV---------------------------------  715 (994)
T ss_pred             hccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc---------------------------------
Confidence            555555655554 9999999999999999999999998886521000                                 


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC-CceeeccccCCCCCceeeccCCCccccCccCCCccCe
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS  396 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~  396 (611)
                                  ...++++|.++  |+.+++++.+.+.+.++ +++++.||+||++...... .  ....+++|+|++++
T Consensus       716 ------------~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~-~--~~~~~svG~p~pg~  778 (994)
T PRK07868        716 ------------LHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV-S--GAKIGSKGRPLPGA  778 (994)
T ss_pred             ------------cCCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc-C--CCCCcccCCccCCC
Confidence                        00114789776  34599999999999886 8899999999987654322 1  23447999999998


Q ss_pred             -eEEEeec----------CCCCCCCCCCCCCcEEEEecCCcccccCCChHhh--hhhc--cCCccccCceEEEccCCeEE
Q 007257          397 -ELRLEEV----------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT--RESI--IDGWFHTGDIGQILPNGVVK  461 (611)
Q Consensus       397 -~v~i~~~----------~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~--~~~~--~~g~~~TGD~~~~~~dG~l~  461 (611)
                       ++++...          +++....++.|+.|||+++++..    + +++.+  +..|  .+|||+|||+|++|+||+|+
T Consensus       779 ~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~  853 (994)
T PRK07868        779 GRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYW  853 (994)
T ss_pred             CceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEE
Confidence             6776521          11211345678899999999753    3 34433  2234  37999999999999999999


Q ss_pred             EEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC--CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHH
Q 007257          462 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  539 (611)
Q Consensus       462 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (611)
                      ++||.||+||+ +|.+|+|.|||++|.+||+|.+|+|++.++.  +.++|+|+++++..        .        +   
T Consensus       854 ~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~--------~--------~---  913 (994)
T PRK07868        854 LVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAA--------I--------T---  913 (994)
T ss_pred             EeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCc--------C--------C---
Confidence            99999999997 7889999999999999999999999998765  37899999875420        0        1   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          540 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       540 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                           .++|+++++ + +|.|++|+.|+++++.      |+|++||++|++|++.
T Consensus       914 -----~~~L~~~l~-~-l~~y~vP~~i~~v~~l------P~T~sGKi~r~~L~~~  955 (994)
T PRK07868        914 -----AADLTEALA-S-LPVGLGPDIVHVVPEI------PLSATYRPTVSALRAA  955 (994)
T ss_pred             -----HHHHHHHHH-h-CCCCcCCeEEEEeCCC------CCCccccEehHHHHhc
Confidence                 134555654 3 8999999999999765      9999999999999865

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-56  Score=486.70  Aligned_cols=484  Identities=21%  Similarity=0.247  Sum_probs=361.4

Q ss_pred             cccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeC
Q 007257            3 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL   82 (611)
Q Consensus         3 a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l   82 (611)
                      ++++|+.+ +++.     .+..++.+||.||..++.++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus        31 ~~~~~~~~-~~~~-----~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i  104 (579)
T PRK09192         31 ALGEAGMN-FYDR-----RGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL  104 (579)
T ss_pred             hccCCceE-EEec-----CCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEec
Confidence            45566444 3332     23345899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-------hhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHH
Q 007257           83 YDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL  155 (611)
Q Consensus        83 ~~~~~-------~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (611)
                      ++..+       .+++.++++.++++++++++.....+......    ...++                   ..++..+.
T Consensus       105 ~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----~~~~~-------------------~~~~~~~~  161 (579)
T PRK09192        105 PLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----NPLLH-------------------VLSHAWFK  161 (579)
T ss_pred             cCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----ccccc-------------------eeehhhhc
Confidence            86543       57899999999999999998765544322110    00111                   11222222


Q ss_pred             hcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhccc-ccccccCCCCCCcEEEEecchhhHHHHHH
Q 007257          156 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLSFLPLAHILDRVI  234 (611)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~p~~~~~g~~~  234 (611)
                      ... ..........++++++++|||||||.||+|.++|+++...+..... .+     ++..+|++++.+|++|.+++..
T Consensus       162 ~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~  235 (579)
T PRK09192        162 ALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVRPGDRCVSWLPFYHDMGLVG  235 (579)
T ss_pred             ccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCCCCCeEEEeCCCCCcchhHH
Confidence            111 1111223356789999999999999999999999999988776554 44     6788999999999999999886


Q ss_pred             H-HHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007257          235 E-EYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  308 (611)
Q Consensus       235 ~-~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (611)
                      . +.++..|+++++.+.     ++..+++.+.++++|+++..|..+..+.......                        
T Consensus       236 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~------------------------  291 (579)
T PRK09192        236 FLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK------------------------  291 (579)
T ss_pred             HHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc------------------------
Confidence            4 446888988877652     6889999999999998777555554443211000                        


Q ss_pred             hcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC------CceeeccccCCCCCceeeccCCC
Q 007257          309 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPTTVCFPDE  382 (611)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~g~~~~~~~~~~  382 (611)
                                .....+        ++++|.+++||+++++.+.+.+.+.++      ..+++.||+||+++.++......
T Consensus       292 ----------~~~~~~--------l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~  353 (579)
T PRK09192        292 ----------DLAELD--------LSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGS  353 (579)
T ss_pred             ----------cccccc--------hhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCC
Confidence                      000011        248999999999999999999888763      34999999999987665433211


Q ss_pred             c---------------------------cccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChH
Q 007257          383 M---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD  435 (611)
Q Consensus       383 ~---------------------------~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~  435 (611)
                      .                           ....++|.++|++++++++ +++  ..++.++.|||+++|+.++.||+++ +
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~--~~~~~g~~Gel~i~g~~~~~gY~~~-~  429 (579)
T PRK09192        354 GIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAG--MPLPERVVGHICVRGPSLMSGYFRD-E  429 (579)
T ss_pred             CceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCC--CCCCCCCEEEEEecCCchhhhhcCC-c
Confidence            0                           0124789999999999998 554  3456678999999999999999999 5


Q ss_pred             hhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcc--eEEEEecCCC--CeEEEE
Q 007257          436 LTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE--DIWVYGDSLK--SMLVAV  510 (611)
Q Consensus       436 ~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~--~~~v~~~~~~--~~~~a~  510 (611)
                      .+.+.+ .+|||+|||+|++ ++|++++.||.||+|++ +|++|+|.+||++|++||+|.  +|+|++.++.  +.++++
T Consensus       430 ~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~  507 (579)
T PRK09192        430 ESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLL  507 (579)
T ss_pred             cccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEE
Confidence            555555 7899999999999 99999999999999997 999999999999999999998  8999987654  367777


Q ss_pred             EecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHH
Q 007257          511 VVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNK  590 (611)
Q Consensus       511 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~  590 (611)
                      ++.....                    ....+.+.+.+.+.+.    +.+..|..+.+++.    +.+|+|++||++|++
T Consensus       508 v~~~~~~--------------------~~~~~~l~~~~~~~l~----~~~~~~~~i~~~~~----~~lP~t~~GKv~R~~  559 (579)
T PRK09192        508 VQCRISD--------------------EERRGQLIHALAALVR----SEFGVEAAVELVPP----HSLPRTSSGKLSRAK  559 (579)
T ss_pred             EEecCCC--------------------hHHHHHHHHHHHHHHH----HHhCCCceEEEeCC----CCcCCCCCcchhHHH
Confidence            7765421                    1112223333333221    23566777777742    346999999999999


Q ss_pred             HHHHHHH
Q 007257          591 LLIYYQV  597 (611)
Q Consensus       591 l~~~~~~  597 (611)
                      |++.|..
T Consensus       560 l~~~~~~  566 (579)
T PRK09192        560 AKKRYLS  566 (579)
T ss_pred             HHHHHHc
Confidence            9999876

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.5e-55  Score=474.00  Aligned_cols=484  Identities=17%  Similarity=0.172  Sum_probs=360.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+..|+.+++...   ++    .+.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++++
T Consensus        11 ~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~   83 (545)
T PRK07768         11 NARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTM   83 (545)
T ss_pred             HhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccc
Confidence            47788999988765   32    268999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHH-------HHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHH
Q 007257           82 LYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  154 (611)
Q Consensus        82 l~~~~~~~~l-------~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (611)
                      +++..+.+++       .++++.++++.+++++........ ...  .                      ......++++
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~--~----------------------~~~~~~~~~l  138 (545)
T PRK07768         84 LHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEE--K----------------------GIRVLTVADL  138 (545)
T ss_pred             cCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hcc--c----------------------CCceeehhhh
Confidence            9988876654       446777899999998754332211 000  0                      0112334444


Q ss_pred             HhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCC-cEEEEecchhhHHHHH
Q 007257          155 LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSFLPLAHILDRV  233 (611)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~p~~~~~g~~  233 (611)
                      .....   .......++++++++|||||||.||+|.++|.++...+......+     ++..+ |++++.+|++|..++.
T Consensus       139 ~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~p~~~~~g~~  210 (545)
T PRK07768        139 LAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSWLPLFHDMGMV  210 (545)
T ss_pred             cccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEeCCCccchHHH
Confidence            33211   122345679999999999999999999999999988877665554     56665 8999999999999987


Q ss_pred             H-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007257          234 I-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  307 (611)
Q Consensus       234 ~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (611)
                      . ++.++..|++++++..     ++..+...++++++|++.++|..+..+...+......                    
T Consensus       211 ~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------  270 (545)
T PRK07768        211 GFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP--------------------  270 (545)
T ss_pred             HHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc--------------------
Confidence            6 4556899999988754     6788899999999999988887776665432111000                    


Q ss_pred             hhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHH---cCC---ceeeccccCCCCCceeeccCC
Q 007257          308 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTETCGPTTVCFPD  381 (611)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~yG~tE~g~~~~~~~~~  381 (611)
                                   ..        ..++++|.++++|+++++...+++.+.   +|.   .+++.||+||++..+......
T Consensus       271 -------------~~--------~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~  329 (545)
T PRK07768        271 -------------GA--------FDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCG  329 (545)
T ss_pred             -------------cC--------CCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCC
Confidence                         00        112489999999999999999998774   455   499999999998765443221


Q ss_pred             C-------------------------ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHh
Q 007257          382 E-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL  436 (611)
Q Consensus       382 ~-------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~  436 (611)
                      .                         ....+++|+|++++++++++ +++  .+++.++.|||+++|+.++.||++++..
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~--~~~~~g~~Gel~v~~~~~~~gy~~~~~~  406 (545)
T PRK07768        330 AGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDG--QVLPPRGVGVIELRGESVTPGYLTMDGF  406 (545)
T ss_pred             CCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCC--CCCCCCCEEEEEEccCcccccccCCCCC
Confidence            1                         11236889999999999998 555  3456778999999999999999987655


Q ss_pred             hhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecC--CC---CeEEEEE
Q 007257          437 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LK---SMLVAVV  511 (611)
Q Consensus       437 ~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~--~~---~~~~a~v  511 (611)
                      ....+.+|||+|||+++++++|+++++||.+|+|++ +|.+|+|.+||+.|.++|+|.++.|++..  +.   +.+++++
T Consensus       407 ~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v  485 (545)
T PRK07768        407 IPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAV  485 (545)
T ss_pred             cccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEE
Confidence            544446889999999999999999999999999997 89999999999999999999998777532  22   2344444


Q ss_pred             ecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHH
Q 007257          512 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  591 (611)
Q Consensus       512 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l  591 (611)
                      +.....                   .......+.+.+++.+. ..+  ...|..+.+++.    +.+|+|++||++|+.+
T Consensus       486 ~~~~~~-------------------~~~~~~~l~~~~~~~l~-~~~--~~~p~~v~~v~~----~~lP~t~~GKi~r~~l  539 (545)
T PRK07768        486 ESNAFE-------------------DPAEVRRIRHQVAHEVV-AEV--GVRPRNVVVLGP----GSIPKTPSGKLRRANA  539 (545)
T ss_pred             Eecccc-------------------cHHHHHHHHHHHHHHHH-HHh--CCCccEEEEeCC----CcCCCCCchhHHHHHH
Confidence            333211                   11111222333333221 111  145777888752    2469999999999999


Q ss_pred             HHHHH
Q 007257          592 LIYYQ  596 (611)
Q Consensus       592 ~~~~~  596 (611)
                      +++|.
T Consensus       540 ~~~~~  544 (545)
T PRK07768        540 AELVT  544 (545)
T ss_pred             HHhcC
Confidence            99874

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-54  Score=454.25  Aligned_cols=397  Identities=16%  Similarity=0.111  Sum_probs=332.6

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEE
Q 007257           26 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  105 (611)
Q Consensus        26 ~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~  105 (611)
                      +++||.||.++++++|..|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            69999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCC
Q 007257          106 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  185 (611)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  185 (611)
                      ++.....                  .                                ......++++++++|||||||.
T Consensus        86 ~~~~~~~------------------~--------------------------------~~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         86 GESDFTK------------------L--------------------------------EAVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             cCccccc------------------c--------------------------------cCCCCCCCCceEEEECCCCCCC
Confidence            7631000                  0                                0012356789999999999999


Q ss_pred             CceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhhcCceEEEecC-ChHHHHHHHhhhc
Q 007257          186 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK  263 (611)
Q Consensus       186 pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~  263 (611)
                      ||+|.++|+++...+..+...+     ....+++++...|++|.+|+.. .+.++..|+++++.+. ++..+++.+++++
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  190 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP  190 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999998887766655     6778899999999999999865 6667899999988876 9999999999999


Q ss_pred             CeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEec
Q 007257          264 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  343 (611)
Q Consensus       264 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G  343 (611)
                      +|+++++|.++..+.+....                                                 ..+++.++++|
T Consensus       191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G  221 (414)
T PRK08308        191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG  221 (414)
T ss_pred             CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence            99999999999887642110                                                 02678899999


Q ss_pred             CCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEec
Q 007257          344 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  423 (611)
Q Consensus       344 ~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~  423 (611)
                      +++++++.+.+++. +.++++.||+||++++.....   ....+++|+|++++++++.+ +        .++.|||++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~  288 (414)
T PRK08308        222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM  288 (414)
T ss_pred             CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence            99999999999886 678999999999986543221   22347899999999998875 2        23479999986


Q ss_pred             CCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCC
Q 007257          424 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL  503 (611)
Q Consensus       424 ~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~  503 (611)
                      .                  ++||+|||+|++++||++++.||.||+|++ +|++|+|.+||+++.++|+|.+|+|++.++
T Consensus       289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~  349 (414)
T PRK08308        289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKD  349 (414)
T ss_pred             C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            2                  679999999999999999999999999997 899999999999999999999999998775


Q ss_pred             C---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCcc
Q 007257          504 K---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV  580 (611)
Q Consensus       504 ~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~  580 (611)
                      .   +.+.++++.....                  +.        ++++++++ ++|+.|++|..+++++..      |+
T Consensus       350 ~~~~~~~~~~v~~~~~~------------------~~--------~~l~~~l~-~~l~~~~~P~~i~~v~~i------P~  396 (414)
T PRK08308        350 PVAGERVKAKVISHEEI------------------DP--------VQLREWCI-QHLAPYQVPHEIESVTEI------PK  396 (414)
T ss_pred             CCCCceEEEEEEeCCCC------------------CH--------HHHHHHHH-HhCccccCCcEEEEeccC------CC
Confidence            5   3677887765421                  11        23444443 679999999999998665      99


Q ss_pred             ccccccchHHHH
Q 007257          581 TATLKKKRNKLL  592 (611)
Q Consensus       581 t~~GKv~R~~l~  592 (611)
                      |++||++|+.|+
T Consensus       397 t~~GKi~r~~~~  408 (414)
T PRK08308        397 NANGKVSRKLLE  408 (414)
T ss_pred             CCCcCeehhhhh
Confidence            999999999653

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=6.7e-55  Score=458.77  Aligned_cols=400  Identities=31%  Similarity=0.465  Sum_probs=312.9

Q ss_pred             CccccCCCCCceee-eccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEE
Q 007257            1 MSVQKYPGNRMLGW-RPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC   79 (611)
Q Consensus         1 ~~a~~~pd~~a~~~-~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   79 (611)
                      ++|+++||++|+++ .    +     +++||+||+++++++|..|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         3 ~~a~~~pd~~a~~~~~----~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~   73 (417)
T PF00501_consen    3 RQAQRYPDRIALIDDE----G-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIP   73 (417)
T ss_dssp             HHHHHSTTSEEEEETT----T-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EE
T ss_pred             hHHhhCCCceEEEECC----C-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccc
Confidence            46899999999998 4    3     899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCChhHHHHHHhhcCccEEEE----cchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHH
Q 007257           80 VPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL  155 (611)
Q Consensus        80 ~~l~~~~~~~~l~~~l~~~~~~~li~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (611)
                      +|++|.++.+++.++|+.++++++|+    +......+.... ........++.++.....             ..+.+.
T Consensus        74 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~  139 (417)
T PF00501_consen   74 VPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIF-KQEDPSSSIIILDRDDLP-------------KKEALK  139 (417)
T ss_dssp             EEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHH-TTSTTTEEEEEESHSSCT-------------TCHHHH
T ss_pred             cccccccccccccccccccceeEEEEeccccccccccchhhh-cccccccccccccccccc-------------cccccc
Confidence            99999999999999999999999997    222212121111 111233445555532210             000011


Q ss_pred             hcccccCCcCCC-CCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHH-H
Q 007257          156 HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-V  233 (611)
Q Consensus       156 ~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~  233 (611)
                      ......... .+ ..++++++++|||||||.||+|.++|+++.+.+..+.  +... .+++  |++++..|++|.+|+ .
T Consensus       140 ~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~~  213 (417)
T PF00501_consen  140 SASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLIS  213 (417)
T ss_dssp             HHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHHH
T ss_pred             ccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeeccccccccccc
Confidence            000000000 00 0578999999999999999999999999999887754  1110 1223  699999999999999 6


Q ss_pred             HHHHHhhcCceEEEecC-C---hHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007257          234 IEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  309 (611)
Q Consensus       234 ~~~~~l~~G~~~~~~~~-~---~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (611)
                      .++.++..|+++++++. .   +..+++.++++++|+++++|.++..+++..+.. ...                     
T Consensus       214 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~---------------------  271 (417)
T PF00501_consen  214 ALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI---------------------  271 (417)
T ss_dssp             HHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG---------------------
T ss_pred             cccccccccccccccccccccccccchhccccccccccccccccccccccccccc-ccc---------------------
Confidence            68889999999999987 2   477899999999999999999999987621110 000                     


Q ss_pred             cCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCC-ceeeccccCCCCCceeecc-CCCccccC
Q 007257          310 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMVG  387 (611)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~g~~~~~~~-~~~~~~~~  387 (611)
                                         ....++++|.++++|+++++++.+.+++.++. +|++.||+||++.+++... .......+
T Consensus       272 -------------------~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  332 (417)
T PF00501_consen  272 -------------------SKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPG  332 (417)
T ss_dssp             -------------------TTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTT
T ss_pred             -------------------cccccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccc
Confidence                               00012479999999999999999999999987 9999999999999998664 23334557


Q ss_pred             ccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccC-CccccCceEEEccCCeEEEEecc
Q 007257          388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       388 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      ++|.|+++++++|+| +++ ..+++.|+.|||+|+||+++.||+++++.+.+.|.+ |||+|||+|++|+||+++++||.
T Consensus       333 ~~G~~~~~~~~~ivd-~~~-~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~  410 (417)
T PF00501_consen  333 SVGKPLPGVEVKIVD-PNT-GEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRS  410 (417)
T ss_dssp             SEBEESTTEEEEEEC-TTT-SSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEG
T ss_pred             ccccccccccccccc-ccc-cccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEee
Confidence            899999999999998 442 356678889999999999999999999999999965 89999999999999999999999


Q ss_pred             CCeEEc
Q 007257          467 KNLIKI  472 (611)
Q Consensus       467 ~d~i~~  472 (611)
                      ||+||+
T Consensus       411 ~~~i~~  416 (417)
T PF00501_consen  411 DDMIKV  416 (417)
T ss_dssp             SCEEEE
T ss_pred             CCEEEe
Confidence            999996

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1e-52  Score=414.32  Aligned_cols=489  Identities=19%  Similarity=0.180  Sum_probs=373.0

Q ss_pred             CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      ++|+++||++|+++.   +.    .+++||+|+++.++++|++|...|++.||.||++|+|.+|++.+.|+++++|++..
T Consensus        85 ~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA  157 (649)
T KOG1179|consen   85 SQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITA  157 (649)
T ss_pred             HHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceee
Confidence            368999999999998   32    26999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      .||+++..+.|.|.|+.++|+++|++.+..+.+.+...........++..+....         .....++...++....
T Consensus       158 ~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~~L~~~l~~~~~  228 (649)
T KOG1179|consen  158 FINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIESLLAKLSAAPK  228 (649)
T ss_pred             eeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHHHHHHhhccccc
Confidence            9999999999999999999999999999887776653322222223333322211         0111122222222222


Q ss_pred             cC---CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HH
Q 007257          161 NE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EE  236 (611)
Q Consensus       161 ~~---~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~  236 (611)
                      .+   .........++++.+|||||||.||+.+++|......+..+...+     ++++.|+++..+|++|..+.+. +.
T Consensus       229 ~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPLYHsaa~ilGi~  303 (649)
T KOG1179|consen  229 HPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPLYHSAAGILGIG  303 (649)
T ss_pred             CCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchhHHHHHHHHHHH
Confidence            22   122334667899999999999999999999999888887676666     8999999999999999999887 56


Q ss_pred             HHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007257          237 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  315 (611)
Q Consensus       237 ~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (611)
                      .++..|+|+++-.. ++..+|+...+|++|+......+++.|++......++                            
T Consensus       304 ~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er----------------------------  355 (649)
T KOG1179|consen  304 GCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER----------------------------  355 (649)
T ss_pred             HHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc----------------------------
Confidence            67999999999887 9999999999999999999999998887632221111                            


Q ss_pred             cchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCc-eeeccccCCCCCceeeccCCCccccCccCCC--
Q 007257          316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPV--  392 (611)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~--  392 (611)
                                       ...+|..+  |..+.++.++.|.++||++ |.+.||+||........ .+.   .|.+|+.  
T Consensus       356 -----------------~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~-d~~---vGA~G~~~~  412 (649)
T KOG1179|consen  356 -----------------QHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY-DGR---VGACGFMSR  412 (649)
T ss_pred             -----------------CceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee-cCc---cccccchhh
Confidence                             12566655  7789999999999999866 99999999987654433 221   1333321  


Q ss_pred             -----ccCeeEE--------EeecCCCCCCCCCCCCCcEEEEe--cCCc---ccccCCChHhhhhh-----cc--CCccc
Q 007257          393 -----SVYSELR--------LEEVPEMGYSPLDDPPCGEVCVR--GKTL---FSGYYKNPDLTRES-----II--DGWFH  447 (611)
Q Consensus       393 -----~~~~~v~--------i~~~~~~~~~~~~~~~~Gel~v~--~~~~---~~gy~~~~~~~~~~-----~~--~g~~~  447 (611)
                           .|-.-++        +.| +++-..++++||.|.++-+  ....   +.||.+..+.+.+.     |.  |-||.
T Consensus       413 ~~~~l~p~~LIk~D~~t~E~iRd-~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~  491 (649)
T KOG1179|consen  413 LLKLLYPFRLIKVDPETGEPIRD-SQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFN  491 (649)
T ss_pred             hhhhccceEEEEecCCCCceeec-CCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEe
Confidence                 1111111        122 3444466788999976532  2333   78999977666543     42  44999


Q ss_pred             cCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC----CeEEEEEecChHHHHHHHH
Q 007257          448 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAY  523 (611)
Q Consensus       448 TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~vv~~~~~~~~~~~  523 (611)
                      |||+-.+|+.|++|+.+|..|++.. +|+||++.|||.+|....++.||.|+|+.-+    +.-.|.|+.+++..     
T Consensus       492 tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~-----  565 (649)
T KOG1179|consen  492 TGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTE-----  565 (649)
T ss_pred             eCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCccc-----
Confidence            9999999999999999999999999 9999999999999999999999999986533    25556666555331     


Q ss_pred             HCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          524 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                                     ...+    ++-..+ +..||+|.+|..+.+.++.      ++|.+-|.+|..|.+.
T Consensus       566 ---------------~d~~----~l~~~l-~~~LP~YA~P~FlRl~~~i------~~TgTFKl~K~~L~~e  610 (649)
T KOG1179|consen  566 ---------------KDLE----KLYQHL-RENLPSYARPRFLRLQDEI------EKTGTFKLQKTELQKE  610 (649)
T ss_pred             ---------------chHH----HHHHHH-HhhCccccchHHHHHHhhh------hcccchhhHHHHHHHc
Confidence                           1122    333333 4789999999999999876      8999999999998764

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.1e-51  Score=431.08  Aligned_cols=389  Identities=25%  Similarity=0.321  Sum_probs=324.8

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEEEEcc
Q 007257           29 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  107 (611)
Q Consensus        29 Ty~ql~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~  107 (611)
                      ||.||.+.+.++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 7999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCc
Q 007257          108 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  187 (611)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK  187 (611)
                      .....+.....       .++......                 ..................++++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76654432211       111111110                 000000000011111145789999999999999999


Q ss_pred             eeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecC----ChHHHHHHHhhhc
Q 007257          188 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK  263 (611)
Q Consensus       188 ~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~  263 (611)
                      +|.+||+++...+......+     .+..++++++..|++|.+++..++.++..|+++++++.    .+..+.+.+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999998888877655     77889999999999999998888899999999998876    2689999999999


Q ss_pred             CeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEec
Q 007257          264 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  343 (611)
Q Consensus       264 ~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G  343 (611)
                      +|.+.++|.+++.+.+...                                                ..++++|.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence            9999999999999876422                                                1124899999999


Q ss_pred             CCCCHHHHHHHHHHcC-CceeeccccCCCCCceeeccCCCc--c--ccCccCCCccCeeEEEeecCCCCCCCCCCCCCcE
Q 007257          344 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEM--C--MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  418 (611)
Q Consensus       344 ~~l~~~~~~~~~~~~~-~~v~~~yG~tE~g~~~~~~~~~~~--~--~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Ge  418 (611)
                      +++++++.+.+.+.++ +.+++.||+||+++++........  .  .+.++|.++++++++|++ ++  ..+++.|+.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~--~~~~~~g~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DD--LRPVPVGVVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CC--CCCCCCCCceE
Confidence            9999999999999997 899999999999987753322211  1  157899999999999998 55  35667788999


Q ss_pred             EEEecCCcccccCCChHhhhhhccC-------C--ccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhc
Q 007257          419 VCVRGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  489 (611)
Q Consensus       419 l~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~  489 (611)
                      |+++|+.++.||+++++.+.+.|..       |  ||+|||+|++|++|++++.||.+|++++ +|++++|.+||+.|..
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~  399 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR  399 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence            9999999999999999999888732       2  9999999999999999999999999997 9999999999999999


Q ss_pred             CcCcceEEE
Q 007257          490 APIIEDIWV  498 (611)
Q Consensus       490 ~p~V~~~~v  498 (611)
                      +|.|.||+|
T Consensus       400 ~~~v~~~~v  408 (408)
T TIGR01733       400 HPGVREAVV  408 (408)
T ss_pred             CcchhhhcC
Confidence            999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=8.8e-44  Score=365.83  Aligned_cols=317  Identities=23%  Similarity=0.292  Sum_probs=256.5

Q ss_pred             CCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEE
Q 007257          167 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG  246 (611)
Q Consensus       167 ~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~  246 (611)
                      ...++++++++|||||||.||+|.++|.++..........       +...++++...|++|.+++...+.++..|++++
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v  103 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV  103 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence            3457899999999999999999999999998877654432       234578899999999999887888888999988


Q ss_pred             Eec--C--ChHHHHHHHhhhc--CeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          247 YYH--G--DLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       247 ~~~--~--~~~~~~~~i~~~~--~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      ++.  .  ++..+++.+++++  .++...+|..+..+......                                     
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------  146 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------  146 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-------------------------------------
Confidence            732  2  8899999999998  55666677766554321000                                     


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  400 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i  400 (611)
                               ...+++++.+++||+++++++.+.+.+ +++++++.||+||++..+.           ..|.|++++++++
T Consensus       147 ---------~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i  205 (358)
T PRK07824        147 ---------TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRV  205 (358)
T ss_pred             ---------cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC-----------cCceeCCCCEEEe
Confidence                     001248999999999999999999886 4999999999999876432           2478999999998


Q ss_pred             eecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCceecC
Q 007257          401 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  479 (611)
Q Consensus       401 ~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~  479 (611)
                      .+              |||+++|+.++.||+++++.+  .| .+|||+|||+|++ ++|.+++.||.||+|++ +|++|+
T Consensus       206 ~~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~  267 (358)
T PRK07824        206 ED--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVL  267 (358)
T ss_pred             cC--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEEC
Confidence            44              999999999999999988643  34 5789999999999 89999999999999997 999999


Q ss_pred             cHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCC
Q 007257          480 LEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  556 (611)
Q Consensus       480 ~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  556 (611)
                      |.+||+.|.+||+|.+|+|++.++.   +.++++++...+.                    .    ...+.|.++++ +.
T Consensus       268 p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~--------------------~----~~~~~i~~~~~-~~  322 (358)
T PRK07824        268 PQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGP--------------------A----PTLEALRAHVA-RT  322 (358)
T ss_pred             HHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCC--------------------C----cCHHHHHHHHH-hh
Confidence            9999999999999999999997654   4788888765421                    0    01233444443 67


Q ss_pred             CCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       557 l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      |+.+++|..|+++++.      |+|++||++|++|+++|.+
T Consensus       323 l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        323 LDRTAAPRELHVVDEL------PRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             CccccCCCEEEEecCC------CCCCCccccHHHHHHHhhc
Confidence            9999999999998665      9999999999999998864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-37  Score=344.84  Aligned_cols=399  Identities=22%  Similarity=0.235  Sum_probs=322.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|.+.||++|+.+.   +      .++||+++..+++++|+.|.+.|+.+++.|+++++.++++++.++|++++|+.++|
T Consensus       236 ~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP  306 (642)
T COG1020         236 QAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP  306 (642)
T ss_pred             HHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEec
Confidence            46789999998875   2      59999999999999999999999999999999998899999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++..+++.++++.+++...........     +.    +..+...                     ......
T Consensus       307 ~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~---------------------~~~~~~  356 (642)
T COG1020         307 LDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDDAL---------------------SEIPDT  356 (642)
T ss_pred             CCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccccc---------------------ccCCcc
Confidence            99999999999999999999999983321110000     00    1111000                     000000


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........+++.+|++|||||||.||||..+|+++.+.+......+     .....|+++...++.+.......+.++..
T Consensus       357 ~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~~~~~f~~l~~  431 (642)
T COG1020         357 DPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDASVFEIFGALLE  431 (642)
T ss_pred             CcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchhHHHHHHHHhC
Confidence            0112234568999999999999999999999999999777766665     78889999999999888888888999999


Q ss_pred             CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      |+++++...    ++..+...+.++++|++..+|.++..+......... .                             
T Consensus       432 G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~-~-----------------------------  481 (642)
T COG1020         432 GARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL-I-----------------------------  481 (642)
T ss_pred             CCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccc-c-----------------------------
Confidence            999999875    899999999999999999999999888653110000 0                             


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc--CCceeeccccCCCCCceeeccCCCccc-cCccCCCcc
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPVSV  394 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~g~~~~~~~~~~~~~-~~~~G~~~~  394 (611)
                                   ...+.++.+++||+.++..+...+....  ...+.+.||+||+.............. ...+|.|++
T Consensus       482 -------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~  548 (642)
T COG1020         482 -------------SPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVA  548 (642)
T ss_pred             -------------CCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeC
Confidence                         0002489999999999999999887665  468999999999666554433222111 358899999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccC-CccccCceEEEccCCeEEEEeccCCeEEcC
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNLIKIS  473 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~  473 (611)
                      +..+.+.+ ..  ..+++.+..||+++.|.+++.||+++++.+.+.|.. .+|+|||++++..||.+.++||.|+++|+ 
T Consensus       549 n~~~~ild-~~--~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki-  624 (642)
T COG1020         549 NTQLYILD-QG--LRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI-  624 (642)
T ss_pred             CCeEEEEC-CC--CCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEe-
Confidence            99999988 33  356666778999999999999999999999999966 49999999999999999999999999998 


Q ss_pred             CceecCcHHHHHHHhcCc
Q 007257          474 QGEYVALEYLENVYCVAP  491 (611)
Q Consensus       474 ~G~~v~~~~iE~~l~~~p  491 (611)
                      .|.+|.+.+||..+.++|
T Consensus       625 ~g~Riel~eie~~l~~~~  642 (642)
T COG1020         625 RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             ceEecCcHHHHHHHhcCC
Confidence            899999999999998875

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=7.8e-37  Score=312.43  Aligned_cols=287  Identities=18%  Similarity=0.123  Sum_probs=221.6

Q ss_pred             CCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCC--CCCcEEEEecchhhHHHHHH-HHHHhhcCceEEE
Q 007257          171 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  247 (611)
Q Consensus       171 ~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~  247 (611)
                      +..++++|||||||.||+|.+||+++...+..+...+     ++  ...+++++.+|++|.+|+.+ .+.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            4478999999999999999999999988777665544     34  34468999999999999765 5667889999988


Q ss_pred             ecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhH
Q 007257          248 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  326 (611)
Q Consensus       248 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (611)
                      .+. ++..+++.++.+  |+++++|.+++.+.+..                                             
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~---------------------------------------------  202 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD---------------------------------------------  202 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC---------------------------------------------
Confidence            765 777888877653  89999999998875410                                             


Q ss_pred             HHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCC-ceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCC
Q 007257          327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE  405 (611)
Q Consensus       327 ~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~  405 (611)
                          ..+++++. ++||+++++++.+.+.+. +. .+++.||+||++++++...+      +..|.+.|+.++.+.+   
T Consensus       203 ----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~~~---  267 (386)
T TIGR02372       203 ----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFADT---  267 (386)
T ss_pred             ----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccCCC---
Confidence                01136775 678999999999999886 64 69999999999886554322      3346677776553311   


Q ss_pred             CCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHH
Q 007257          406 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN  485 (611)
Q Consensus       406 ~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~  485 (611)
                      +.          +   .|+                  ..|++|||++++|++|+|++.||.||+|++ +|++|+|.+||+
T Consensus       268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~  315 (386)
T TIGR02372       268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD  315 (386)
T ss_pred             cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence            10          0   021                  125889999999999999999999999997 999999999999


Q ss_pred             HHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeee
Q 007257          486 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKG  565 (611)
Q Consensus       486 ~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~  565 (611)
                      +|.+||+|.+|+|+.  ..+.+.|+|+++++.                  +.    +.+.++|.++++ .+|+.|++|..
T Consensus       316 ~l~~~p~V~~~~v~~--~g~~~~a~vv~~~~~------------------~~----~~~~~~l~~~~~-~~L~~~~~P~~  370 (386)
T TIGR02372       316 ILERNPRVRAAAVRL--DGRRLKAFIVVAEDA------------------DE----AELEIELRATAA-RHLPAPARPDR  370 (386)
T ss_pred             HHHcCCCceEEEEEc--CCceEEEEEEECCCC------------------Ch----HHHHHHHHHHHH-HhCCCCCCCcE
Confidence            999999999999975  346888998887532                  11    123345666665 67999999999


Q ss_pred             EEEecCCCCCCCCccccccccc
Q 007257          566 VILDPRPFDMERDLVTATLKKK  587 (611)
Q Consensus       566 i~~~~~~~~~~~~P~t~~GKv~  587 (611)
                      +.++++.      |+|++||++
T Consensus       371 i~~~~~l------P~t~~GKi~  386 (386)
T TIGR02372       371 FRFGTEL------PRTGAGKLA  386 (386)
T ss_pred             EEEcccC------CCCCCCCcC
Confidence            9998765      999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=1.5e-33  Score=295.79  Aligned_cols=331  Identities=18%  Similarity=0.152  Sum_probs=230.5

Q ss_pred             CCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHH-HHHHHhhcCceEEE
Q 007257          169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGASVGY  247 (611)
Q Consensus       169 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~  247 (611)
                      +.++++.+++||||||.||++.++|.++..........+..  .++..+|++++..++.+..+.. ..+.+...|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            45678899999999999999999999987654443322211  1677889988876655433322 34446778988887


Q ss_pred             ecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhH
Q 007257          248 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  326 (611)
Q Consensus       248 ~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (611)
                      .+. ++..+++.|++++||+++++|+++..|++.........                                      
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~--------------------------------------  192 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP--------------------------------------  192 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc--------------------------------------
Confidence            765 78999999999999999999999999876433211000                                      


Q ss_pred             HHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCC--ceeeccCCCccccCccCCCc--cCeeEEEee
Q 007257          327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG--PTTVCFPDEMCMVGTAGPVS--VYSELRLEE  402 (611)
Q Consensus       327 ~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~--~~~~~~~~~~~~~~~~G~~~--~~~~v~i~~  402 (611)
                           ...++|.++++|+++++++.+.+.+.||+++++.||+||+++  +...+...      ..|.++  +...++|+|
T Consensus       193 -----~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~~------~~g~~~~~~~~~~eivd  261 (422)
T TIGR02155       193 -----AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVET------QDGLHIWEDHFYPEIID  261 (422)
T ss_pred             -----ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeeccccc------CCCceEecCeeEEEEEC
Confidence                 003799999999999999999999999999999999999853  22222111      112222  356667877


Q ss_pred             cCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccC-C-----eEEEEeccCCeEEcCCce
Q 007257          403 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQGE  476 (611)
Q Consensus       403 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d-G-----~l~~~GR~~d~i~~~~G~  476 (611)
                       +++ ..++++|+.|||++++.            ++..|+.+||+|||+++++++ |     .+++.||.+|+|++ +|.
T Consensus       262 -~~~-g~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~  326 (422)
T TIGR02155       262 -PHT-GEVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGV  326 (422)
T ss_pred             -CCC-CCCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCE
Confidence             333 35667889999999973            234456789999999999876 4     46899999999997 899


Q ss_pred             ecCcHHHHHHHhcCcCcc-eEEEEecCCC--CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHH
Q 007257          477 YVALEYLENVYCVAPIIE-DIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE  553 (611)
Q Consensus       477 ~v~~~~iE~~l~~~p~V~-~~~v~~~~~~--~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  553 (611)
                      +|+|.+||++|.+||+|. ++.+......  +.+.+.|+...+...          .     ...+..+.+.++|.+.++
T Consensus       327 ~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~~~~~~~~~~~i~~~~~  391 (422)
T TIGR02155       327 NVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYT----------L-----RLHEQASLLAGEIQHTIK  391 (422)
T ss_pred             EECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCccc----------c-----cchHHHHHHHHHHHHHHH
Confidence            999999999999999998 5544433222  367777776643200          0     011122233445555554


Q ss_pred             hCCCCCcceeeeEEEecCCCCCCCCccccccccchH
Q 007257          554 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  589 (611)
Q Consensus       554 ~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~  589 (611)
                       ..+..+.   .|.++.    ++++|+|+ ||++|.
T Consensus       392 -~~~~~~~---~v~~~~----~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       392 -QEVGVSM---DVHLVE----PGSLPRSE-GKARRV  418 (422)
T ss_pred             -hccCcEE---EEEEEC----CCCccCCC-CCceEE
Confidence             4454442   355542    24569988 999873

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=9.4e-32  Score=282.18  Aligned_cols=507  Identities=15%  Similarity=0.131  Sum_probs=349.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +|+++||++|+...   +..+..-.++||++|+.+|.+++.+|... -+++||.|+++.++++|++++++||+.+|.+++
T Consensus       779 R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPI  855 (1363)
T KOG3628|consen  779 RAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPI  855 (1363)
T ss_pred             HhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeee
Confidence            47789999999998   77777778999999999999999999988 589999999999999999999999999999999


Q ss_pred             eCCCCC------ChhHHHHHHhhcCccEEEEcchhHHHHhccccccc---cCccEEEEecCCcHHHHHHhhhCCCceeeH
Q 007257           81 PLYDTL------GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA---QRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  151 (611)
Q Consensus        81 ~l~~~~------~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  151 (611)
                      |+.|.-      .-..+..+++..++.+|+++......+.+......   .-+..+++.++...              +|
T Consensus       856 pv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~--------------t~  921 (1363)
T KOG3628|consen  856 PVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE--------------TI  921 (1363)
T ss_pred             ccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch--------------hh
Confidence            998764      23367889999999999999886665544322111   12223333333321              11


Q ss_pred             HHHHhcccc--cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhH
Q 007257          152 DEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  229 (611)
Q Consensus       152 ~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~  229 (611)
                      ..-......  ...++.-..++.+|++-+.--++|.--++.++|.++++.+......+.    ...+...+.+..|.+.+
T Consensus       922 ~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~----l~~~rpl~~~~~~~sGl  997 (1363)
T KOG3628|consen  922 RKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQ----LYKSRPLLGCSSPYSGL  997 (1363)
T ss_pred             hhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHc----cccCCceEEEecCccch
Confidence            111111111  122223346788999999999999999999999999999999888872    33445555555566665


Q ss_pred             HHHHHHHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007257          230 LDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  304 (611)
Q Consensus       230 ~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (611)
                      ..+.+++...+.|...+++++     ++..|+..|++|++.-++.+-..+..+.+.+...-+.++..             
T Consensus       998 gf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~------------- 1064 (1363)
T KOG3628|consen  998 GFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKR------------- 1064 (1363)
T ss_pred             hHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhh-------------
Confidence            556679999999999988876     89999999999999999999988888876544332222210             


Q ss_pred             HHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc---CC---ceeeccccCCCCCceeec
Q 007257          305 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGLTETCGPTTVC  378 (611)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~yG~tE~g~~~~~~  378 (611)
                                       ..        ..++ ..++..-+.......+-|.+.+   |.   .+-..|++.=--.++...
T Consensus      1065 -----------------gn--------n~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~ 1118 (1363)
T KOG3628|consen 1065 -----------------GN--------NTSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRS 1118 (1363)
T ss_pred             -----------------hc--------cccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhcc
Confidence                             00        0012 3344444444455555555444   21   122233322111111110


Q ss_pred             c---------CC-----------------CccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCC
Q 007257          379 F---------PD-----------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK  432 (611)
Q Consensus       379 ~---------~~-----------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~  432 (611)
                      .         .+                 ..-.....|...+++++.|++ ++.. .++..|+.||||+.|.+-+.+|++
T Consensus      1119 ~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~S~hnA~~~~~ 1196 (1363)
T KOG3628|consen 1119 YSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVNSAHNASCSFT 1196 (1363)
T ss_pred             ccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEeccccccccccc
Confidence            0         00                 001113458888999999999 5554 677889999999999988888774


Q ss_pred             ChH-hhhhhc----------cCCccccCceEEEcc------CC----eEEEEeccCCeEEcCCceecCcHHHHHHH-hcC
Q 007257          433 NPD-LTRESI----------IDGWFHTGDIGQILP------NG----VVKIIDRKKNLIKISQGEYVALEYLENVY-CVA  490 (611)
Q Consensus       433 ~~~-~~~~~~----------~~g~~~TGD~~~~~~------dG----~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~  490 (611)
                      -.+ .....|          ..+|.||||+|+...      +|    -+|++|-.++.+.+ +|.+.+|.+||..+ +.|
T Consensus      1197 ~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH 1275 (1363)
T KOG3628|consen 1197 IGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERVH 1275 (1363)
T ss_pred             cCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHhc
Confidence            321 222222          124999999999842      22    48999999999998 99999999999999 679


Q ss_pred             cCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEE-e
Q 007257          491 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVIL-D  569 (611)
Q Consensus       491 p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~-~  569 (611)
                      |.|.+|+|+..  ...++.+++...+.                     ++     .+|.....+..|..|.++..++. |
T Consensus      1276 ~~I~~cavF~~--~glvVvviE~~gq~---------------------~~-----~~LvPlIv~~vL~eH~iI~dvV~fV 1327 (1363)
T KOG3628|consen 1276 PSIGGCAVFQA--TGLVVVVIECHGQQ---------------------EL-----ADLVPLIVNVVLEEHYIILDVVAFV 1327 (1363)
T ss_pred             ccccceeeEee--CCeEEEEEEecCch---------------------hH-----hhhhHHHHHHHHhhcceEEEEEEEe
Confidence            99999999984  45677777666532                     01     11112222333555665655444 4


Q ss_pred             cCCCCCCCCccccccccchHHHHHHH-HHHHHHHH
Q 007257          570 PRPFDMERDLVTATLKKKRNKLLIYY-QVEIDQLY  603 (611)
Q Consensus       570 ~~~~~~~~~P~t~~GKv~R~~l~~~~-~~~~~~~y  603 (611)
                      + +   +.+|+++.|..+|..+++.| .+.|+-.|
T Consensus      1328 ~-~---G~~p~~~~gEK~R~~I~~~w~~~kL~~~~ 1358 (1363)
T KOG3628|consen 1328 D-K---GVFPRNSRGEKQRAHILDSWLAGKLDPIY 1358 (1363)
T ss_pred             c-C---CccccCCchhhHHHHHHHHHHhcccceee
Confidence            4 3   88999999999999999976 55666555

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=2e-29  Score=273.98  Aligned_cols=496  Identities=19%  Similarity=0.113  Sum_probs=316.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      .+.+.|++.+..+.+. ....+....+||.+....++.+++.|...|..+|+.|++++..+.++++..++++++|..+++
T Consensus        45 ~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~  123 (1032)
T KOG1178|consen   45 ELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLP  123 (1032)
T ss_pred             HHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEE
Confidence            3566788888777643 345666789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCcc-----EEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHh
Q 007257           82 LYDTLGPGAVNFILDHAEID-----FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  156 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~-----~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (611)
                      ++|.++.-++...+.+.-..     .-+........+   ........                     .......+.+.
T Consensus       124 idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~---~~~~~~~~---------------------~sv~~~~~~f~  179 (1032)
T KOG1178|consen  124 IDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDI---LLNSLFPK---------------------LSVETIADSFQ  179 (1032)
T ss_pred             ecCCCcccccchHHHhhhhhheeccceehhhhhhHHH---Hhhccccc---------------------cchhhccchhh
Confidence            99999921111111111100     111111100000   00000000                     00000011111


Q ss_pred             cccc--cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH
Q 007257          157 LGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  234 (611)
Q Consensus       157 ~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~  234 (611)
                      ....  .........+|..+++.||||+||.||+|..+|..+.+...+....+     .+...+++-.....+..-....
T Consensus       180 ~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~~~~~~~~d~i~~  254 (1032)
T KOG1178|consen  180 MVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTFKTSVYFDDTIQK  254 (1032)
T ss_pred             hhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhhhheeecccchHH
Confidence            1111  11222345677899999999999999999999999999988877665     6666666522222222222222


Q ss_pred             HHHH-hhcCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007257          235 EEYF-FRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  309 (611)
Q Consensus       235 ~~~~-l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (611)
                      ...+ +..|+.+..+..    ++..+.+.++++.++..+.+|++.+.++.........+.             ....+  
T Consensus       255 ~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~-------------~~~~~--  319 (1032)
T KOG1178|consen  255 FIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLE-------------HAFSL--  319 (1032)
T ss_pred             HHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhh-------------hhhhc--
Confidence            3333 555555555433    589999999999999999999999988764332110000             00000  


Q ss_pred             cCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCc-----
Q 007257          310 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM-----  383 (611)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~-----  383 (611)
                                .+.       ....+.|+....+|++...++...+...+ -.-...-|++++..+..........     
T Consensus       320 ----------~dl-------~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~  382 (1032)
T KOG1178|consen  320 ----------SDL-------LTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLT  382 (1032)
T ss_pred             ----------ccc-------cccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceec
Confidence                      000       00114899999999999999888665544 1222233888888776665432210     


Q ss_pred             -cc-------cCccCCCccCeeEEEeecCCCC--CCCCCCCCCcEEEEecCCcccccCCChHhhhhhc------cCCccc
Q 007257          384 -CM-------VGTAGPVSVYSELRLEEVPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI------IDGWFH  447 (611)
Q Consensus       384 -~~-------~~~~G~~~~~~~v~i~~~~~~~--~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------~~g~~~  447 (611)
                       ..       ..-+|...   .+.... ..+.  ...++.+..|.-...+.++..| ++.++.....+      .+.+|+
T Consensus       383 ~~~v~~~p~~~~~~~~~~---~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~  457 (1032)
T KOG1178|consen  383 NENVYSVPKFDSIIGSLT---VLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYR  457 (1032)
T ss_pred             ceeEEeccchhhccCCCc---ceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhccc
Confidence             00       00111111   111111 1111  0111112223333334444455 23333332222      245899


Q ss_pred             cCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEecChHHHHHHHHH
Q 007257          448 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYS  524 (611)
Q Consensus       448 TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~  524 (611)
                      |||+|+...+|.+.+.||.|++||+ +|.++.+.+|+..+..||.|.+++++...++.   .+.||++......      
T Consensus       458 tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~------  530 (1032)
T KOG1178|consen  458 TGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSK------  530 (1032)
T ss_pred             ccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCC------
Confidence            9999999899999999999999997 99999999999999999999999999866553   7999999887531      


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHH
Q 007257          525 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  595 (611)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  595 (611)
                                   ..+    +.+|+.++. +.|+.|++|..++.++..      |+|++||||+++|.+.+
T Consensus       531 -------------~~~----~~~i~~~l~-~~La~y~vPs~~V~l~~v------Pl~~~GKvDkkaL~~~~  577 (1032)
T KOG1178|consen  531 -------------SVL----IRDIRNYLK-KELASYMLPSLVVPLAKV------PLNPNGKVDKKALLEYN  577 (1032)
T ss_pred             -------------chh----HHHHHHhhc-ccccceecceEEEEhhhC------CcCCCCCcChhhhhhhh
Confidence                         111    566777775 889999999988887655      99999999999999833

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.96  E-value=2.6e-27  Score=248.52  Aligned_cols=260  Identities=17%  Similarity=0.120  Sum_probs=186.1

Q ss_pred             CCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhhcCceEEE
Q 007257          169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  247 (611)
Q Consensus       169 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~  247 (611)
                      +.++++.+++||||||.||+|.+||.++..........+.  ..++..+|+++...|+.+..+... .+.+...|++++.
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~--~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFV--SQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHH--HcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            4567899999999999999999999998776654433221  126788899999988877655544 3445777887654


Q ss_pred             ecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHH
Q 007257          248 YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK  327 (611)
Q Consensus       248 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (611)
                      .. .....++.|+++++|++.++|+.+..+++.+.......                                       
T Consensus       162 ~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~---------------------------------------  201 (445)
T TIGR03335       162 EG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP---------------------------------------  201 (445)
T ss_pred             CC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc---------------------------------------
Confidence            33 44567899999999999999998887765433211000                                       


Q ss_pred             HHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCC
Q 007257          328 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG  407 (611)
Q Consensus       328 ~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~  407 (611)
                          ...++|.+++||+++++++.+.+.+.||+++++.||+||++. +..+...     .....+.+...++|+| +++ 
T Consensus       202 ----~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~~-----~g~h~~~d~~~vEIvD-p~~-  269 (445)
T TIGR03335       202 ----AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQAV-----AGLHVPEDLVHLDVYD-PRH-  269 (445)
T ss_pred             ----ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecCC-----CCccccCCceEEEEEc-CCC-
Confidence                013899999999999999999999999999999999999863 3333211     1122233456788887 443 


Q ss_pred             CCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEc--cC---C----eEEEEeccCCeEEcCCceec
Q 007257          408 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL--PN---G----VVKIIDRKKNLIKISQGEYV  478 (611)
Q Consensus       408 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~--~d---G----~l~~~GR~~d~i~~~~G~~v  478 (611)
                      ..++++|+.|||++++-....        ++..++=--|+|||++++.  +.   |    ++...||.|||+++ +|.+|
T Consensus       270 ~~~vp~Ge~GELvvT~L~~~~--------~r~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~~  340 (445)
T TIGR03335       270 QRFLPDGECGRIVLTTLLKPG--------ERCGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVPF  340 (445)
T ss_pred             CCCCcCCCceEEEEEecCCCC--------ccCCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEEe
Confidence            466788999999999843210        0000111129999999973  22   3    24456999999999 99999


Q ss_pred             CcHHHHHHHhcCc
Q 007257          479 ALEYLENVYCVAP  491 (611)
Q Consensus       479 ~~~~iE~~l~~~p  491 (611)
                      +|.+||++|.+++
T Consensus       341 ~p~~ie~~l~~~~  353 (445)
T TIGR03335       341 NRVDVERAVFQRE  353 (445)
T ss_pred             CHHHHHHHHhccC
Confidence            9999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.93  E-value=5.9e-24  Score=211.31  Aligned_cols=284  Identities=22%  Similarity=0.202  Sum_probs=212.0

Q ss_pred             CCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchh-hHHHHHHHHHHhhcCceEE
Q 007257          168 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGASVG  246 (611)
Q Consensus       168 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~g~~~~~~~l~~G~~~~  246 (611)
                      .+-++...+--||||||+|+.+.+++..+......+.+.+.  ..+...+|++....-.. +..|+...+.+-..|++++
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~--~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi  164 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLY--SAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI  164 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHH--HccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence            34456677889999999999999999998888777766553  23677888876665532 2222334455556788777


Q ss_pred             EecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhh
Q 007257          247 YYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF  325 (611)
Q Consensus       247 ~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (611)
                      -... +....+.+++.+++|++.++|+.+..|++.+.+.+.  .+.+                                 
T Consensus       165 p~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~--~~~~---------------------------------  209 (438)
T COG1541         165 PISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI--DPDK---------------------------------  209 (438)
T ss_pred             ccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCC--Chhh---------------------------------
Confidence            6665 889999999999999999999999999887766531  1000                                 


Q ss_pred             HHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCce-eeccCCCccccCccCCCccCeeEEEeecC
Q 007257          326 RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT-TVCFPDEMCMVGTAGPVSVYSELRLEEVP  404 (611)
Q Consensus       326 ~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~-~~~~~~~~~~~~~~G~~~~~~~v~i~~~~  404 (611)
                              .+||.+++|+|++++++.+.+.+.||+.+++.||+||..+.. ..|....     ....+-+..-+.++| +
T Consensus       210 --------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~d-P  275 (438)
T COG1541         210 --------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-----GLHIWEDHFIFEIVD-P  275 (438)
T ss_pred             --------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-----CCCcchhhceeeeec-C
Confidence                    389999999999999999999999999999999999998874 3333321     122334556667776 3


Q ss_pred             CCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccC----Ce-----EEEEeccCCeEEcCCc
Q 007257          405 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV-----VKIIDRKKNLIKISQG  475 (611)
Q Consensus       405 ~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d----G~-----l~~~GR~~d~i~~~~G  475 (611)
                       .+...+++|+.|||+++.-.            +..++=--|+|||+..+.++    |+     -.+.||.||++++ .|
T Consensus       276 -~t~e~l~dge~GelV~T~L~------------~~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G  341 (438)
T COG1541         276 -ETGEQLPDGERGELVITTLT------------KEGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RG  341 (438)
T ss_pred             -CcCccCCCCCeeEEEEEecc------------ccCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CC
Confidence             44478888999999998732            11111123999999999774    33     4689999999998 79


Q ss_pred             eecCcHHHHHHHhcCcCcc---eEEEEecCCCCeEEEEEecChH
Q 007257          476 EYVALEYLENVYCVAPIIE---DIWVYGDSLKSMLVAVVVPCEE  516 (611)
Q Consensus       476 ~~v~~~~iE~~l~~~p~V~---~~~v~~~~~~~~~~a~vv~~~~  516 (611)
                      .+|+|.+||+.|.+++.+.   ++++........+.+.|+..++
T Consensus       342 ~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~  385 (438)
T COG1541         342 VNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE  385 (438)
T ss_pred             EEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence            9999999999999999999   4444442233578888888753

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.93  E-value=1.4e-24  Score=205.67  Aligned_cols=220  Identities=15%  Similarity=0.033  Sum_probs=159.8

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      .++++|+++|+++.   ++.+++.+++||+||.++++++|..|.+ .|+++||+|+++++|+++++++++||+++|++++
T Consensus         5 ~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         5 LLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            56789999999865   3322233689999999999999999998 6999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      |++             .+++++++++++......      .+  +.++.+.+....... .........+|.+.......
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~------~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  139 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAA------GS--GEVVALSLDPLGRRV-AGELPPGVIDFAPEVRVHGD  139 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhcc------cC--CceEEEeccccccCC-CCCCCCcccchhhhhhccCC
Confidence            995             678999999887666532      11  122222110000000 00001122355555443212


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF  239 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l  239 (611)
                      .........++|+++++||||+         +|.++....    ..+     ++..+|+++ ..|++|.+|+.. ++.++
T Consensus       140 ~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~~~l  200 (227)
T TIGR03089       140 QFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLLAPL  200 (227)
T ss_pred             CCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHHHHh
Confidence            1111113467899999999986         555555443    223     688899999 999999999975 66789


Q ss_pred             hcCceEEEecC-ChHHHHHHHhhhcCe
Q 007257          240 RRGASVGYYHG-DLNALRDDLMELKPT  265 (611)
Q Consensus       240 ~~G~~~~~~~~-~~~~~~~~i~~~~~t  265 (611)
                      ..|+++++.+. ++..+++.|+++|+|
T Consensus       201 ~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       201 AAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             ccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            99999999876 999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.82  E-value=3.8e-18  Score=180.72  Aligned_cols=493  Identities=15%  Similarity=0.133  Sum_probs=321.1

Q ss_pred             ccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEe
Q 007257            4 QKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICV   80 (611)
Q Consensus         4 ~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~-~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~~   80 (611)
                      .+++..+|.++.   | +.|+...+||..+..++.++|+ .|-+.|+.++|+|.++...+  .++++..++|..+|.+.+
T Consensus       105 nhs~~~ta~i~i---d-~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~v  180 (1363)
T KOG3628|consen  105 NHSATSTAHICI---D-KKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAV  180 (1363)
T ss_pred             cCCCCCceEEEE---c-CCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeec
Confidence            356788899998   5 4555899999999999999999 66677999999999988776  799999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc-
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK-  159 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (611)
                      |+++..+.+++...++.....++++.............                             ..+|...+..-. 
T Consensus       181 p~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~-----------------------------~~s~~k~v~~w~t  231 (1363)
T KOG3628|consen  181 PLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNS-----------------------------PVSLAKAVAWWKT  231 (1363)
T ss_pred             cchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccC-----------------------------cccHHHHHHhhhc
Confidence            99999999999999999999999987765444322110                             001111111100 


Q ss_pred             --------ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccc---c------------ccCCCCC
Q 007257          160 --------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---Q------------FEDKMTV  216 (611)
Q Consensus       160 --------~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~---~------------~~~~~~~  216 (611)
                              ......++..-. ..+|-||++++|.--|++++|. +......+.....   .            .-.....
T Consensus       232 ~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~  309 (1363)
T KOG3628|consen  232 NDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPS  309 (1363)
T ss_pred             ccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCc
Confidence                    011111122222 7999999999999999999998 5554444322210   0            0113345


Q ss_pred             CcEEEEecchhhHHHHHH-HHHHhhcCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchH
Q 007257          217 DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  291 (611)
Q Consensus       217 ~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~  291 (611)
                      .+.++.........|++. .+.+++.|.+.+.++.    .|..+...+.+++.+++..-...+......+.+        
T Consensus       310 ~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~--------  381 (1363)
T KOG3628|consen  310 EDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE--------  381 (1363)
T ss_pred             ccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC--------
Confidence            666666666666677765 7778999999988876    788999999999999998876666554332211        


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc----C--------
Q 007257          292 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----C--------  359 (611)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~----~--------  359 (611)
                                               .| ...+.+.+-++..++++|.+++.-..+..+...-..+.+    |        
T Consensus       382 -------------------------~p-~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~  435 (1363)
T KOG3628|consen  382 -------------------------DP-KATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVD  435 (1363)
T ss_pred             -------------------------Cc-ccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceee
Confidence                                     01 111223444445678999999999999888655544442    2        


Q ss_pred             ----------CceeeccccCCCCCceeeccCCCc-----------------------------cccCccCCCccC-eeEE
Q 007257          360 ----------AFLVQGYGLTETCGPTTVCFPDEM-----------------------------CMVGTAGPVSVY-SELR  399 (611)
Q Consensus       360 ----------~~v~~~yG~tE~g~~~~~~~~~~~-----------------------------~~~~~~G~~~~~-~~v~  399 (611)
                                .-....-+++|.+......+....                             .....+|...|+ +.+.
T Consensus       436 ~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~  515 (1363)
T KOG3628|consen  436 FPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLA  515 (1363)
T ss_pred             chhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEE
Confidence                      112222334555544433322100                             011244555555 2333


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------------CCccccCceEEEccCCeEEEEecc
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------------DGWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------------~g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      ++  +++....+..++.|||||.+++...+|+.-+..+...|.             ..|.|||-+|++. +|.++++|-.
T Consensus       516 vv--~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~k  592 (1363)
T KOG3628|consen  516 VV--NPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGLK  592 (1363)
T ss_pred             Ee--CCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEEec
Confidence            33  466667777889999999999999999988888777762             1289999999996 6667776666


Q ss_pred             CCeEEcCCceecCc----------HHHHHHHhcCcCcceEEEEecCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhc
Q 007257          467 KNLIKISQGEYVAL----------EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  536 (611)
Q Consensus       467 ~d~i~~~~G~~v~~----------~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~  536 (611)
                      +|++.--.|.....          +.|+.+.+..+.|-++.+|-   .+++..+++-++...+         +      +
T Consensus       593 ~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP~a~e---------~------~  654 (1363)
T KOG3628|consen  593 EDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESPDATE---------E------N  654 (1363)
T ss_pred             hhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCcchhh---------h------h
Confidence            66554323443332          34566677888899999988   3344444433332211         0      1


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          537 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       537 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .-+....+.+.+..+.   ++.-|    .+.+++    ...+|||+.|-+.-...+++|.+
T Consensus       655 ~~q~~~~v~q~l~~iH---qv~vy----CilivP----~~tLPrt~~~Gi~~~~~k~~F~~  704 (1363)
T KOG3628|consen  655 SFQWMSRVFQALDSIH---QVGVY----CILIVP----ANTLPRTPLGGIHNNECKQAFLE  704 (1363)
T ss_pred             hhhHHHHHHHHHHHHh---cccce----EEEEec----cccCCCccccccccHHHHHHHHc
Confidence            1112223444444443   23333    344453    36789999988999999998855

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.78  E-value=1.9e-16  Score=162.43  Aligned_cols=259  Identities=17%  Similarity=0.163  Sum_probs=166.7

Q ss_pred             eEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecc-hhhHHHHHHHHHHhhcCceEEEec--
Q 007257          173 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP-LAHILDRVIEEYFFRRGASVGYYH--  249 (611)
Q Consensus       173 ~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-~~~~~g~~~~~~~l~~G~~~~~~~--  249 (611)
                      -..+..||||||.|-.+..+..............+.  ..++..++++..... -.+.+..   +.  .....+.+++  
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~--~~g~~~g~r~a~~~~~~~~ly~~---~~--~~~~~~~~~~l~  173 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVL--PDGLFAKHRIAFFLRADNNLYQS---VN--NRWISLDFFDLL  173 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhC--ccccccCCcEEEEEccChhHHHH---HH--hccceeeecCCC
Confidence            356778999999999999998876544433322221  113444444444321 1122211   10  0111122232  


Q ss_pred             CChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHH
Q 007257          250 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  329 (611)
Q Consensus       250 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (611)
                      .+.+.+++.|++++||++.++|+.+..|++.+.+...  .                                        
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~----------------------------------------  211 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T----------------------------------------  211 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C----------------------------------------
Confidence            2788999999999999999999999999875543210  0                                        


Q ss_pred             HHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE--EeecCCCC
Q 007257          330 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR--LEEVPEMG  407 (611)
Q Consensus       330 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~--i~~~~~~~  407 (611)
                          .+++.++++||.++++..+.+.+.||++|++.||+|| |.++..|..+..+.      -...+-++  ++| +++ 
T Consensus       212 ----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~lHl------~ed~~~vE~~ivD-~~~-  278 (430)
T TIGR02304       212 ----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGTLHL------NEDLVHIEKQYLD-EHK-  278 (430)
T ss_pred             ----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCCEEE------ccccEEEEeeEEC-CCC-
Confidence                2689999999999999999999999999999999999 66665554332111      11222233  555 322 


Q ss_pred             CCCCCCCCCcEEEEecCC-cccccCCChHhhhhhccCCccccCceEEEccC----Ce----E-EEEeccCCeEEc--CCc
Q 007257          408 YSPLDDPPCGEVCVRGKT-LFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV----V-KIIDRKKNLIKI--SQG  475 (611)
Q Consensus       408 ~~~~~~~~~Gel~v~~~~-~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d----G~----l-~~~GR~~d~i~~--~~G  475 (611)
                              .+..+|++-. -....             --|+|||++.+.++    |.    + .+.||.+|++++  .+|
T Consensus       279 --------~~~~ViT~L~n~~~Pl-------------IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G  337 (430)
T TIGR02304       279 --------RFVPIITDFTRTTQPI-------------VRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSG  337 (430)
T ss_pred             --------ceEEEEecCCCccceE-------------EeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCC
Confidence                    1444555521 11111             13999999988544    32    3 378999999984  355


Q ss_pred             ee--cCcHHHHHHH-hcCcCcceEEEEecCCCCeEEEEEecCh
Q 007257          476 EY--VALEYLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPCE  515 (611)
Q Consensus       476 ~~--v~~~~iE~~l-~~~p~V~~~~v~~~~~~~~~~a~vv~~~  515 (611)
                      ..  ++|..+++.| ...++|.+..++... .+.+...+++..
T Consensus       338 ~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~  379 (430)
T TIGR02304       338 DEQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL  379 (430)
T ss_pred             CeEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence            44  5889999885 568999999988865 556666666553

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.77  E-value=1.1e-18  Score=174.56  Aligned_cols=115  Identities=15%  Similarity=0.049  Sum_probs=96.6

Q ss_pred             ccCCccccCceEEE-ccCCeEEEEeccCCeEEcCCc---eecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEec
Q 007257          441 IIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  513 (611)
Q Consensus       441 ~~~g~~~TGD~~~~-~~dG~l~~~GR~~d~i~~~~G---~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~  513 (611)
                      +.+|||+|||+|++ |+||+|++.||.+      +|   ++|+|. ||++|.+||+|.||+|++.+++   +.++|+|++
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~  278 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEA  278 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEE
Confidence            46899999999998 7999999999997      56   799999 9999999999999999998766   479999987


Q ss_pred             ChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          514 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      ..+.                  +.        ++|.++++ ++|+. ++|+.+.++++.      |+|++||++|++|+.
T Consensus       279 ~~~~------------------~~--------~el~~~l~-~~L~~-kvP~~v~~v~~l------P~t~~GKi~R~~Lr~  324 (365)
T PRK09188        279 ELPA------------------DE--------KSLRARLA-GAKPP-KPPEHIQPVAAL------PRDADGTVRDDILRL  324 (365)
T ss_pred             CCCC------------------CH--------HHHHHHHH-hhchh-cCCcEEEEECCC------CCCCCCCccHHHHHH
Confidence            6321                  11        23445554 77999 999999999765      999999999999988


Q ss_pred             HHH
Q 007257          594 YYQ  596 (611)
Q Consensus       594 ~~~  596 (611)
                      ...
T Consensus       325 ~~~  327 (365)
T PRK09188        325 IAM  327 (365)
T ss_pred             Hhh
Confidence            753

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.93  E-value=1.1e-07  Score=95.97  Aligned_cols=235  Identities=18%  Similarity=0.229  Sum_probs=138.4

Q ss_pred             CCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhh---HHHHH--HHHHHhhcCc
Q 007257          169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH---ILDRV--IEEYFFRRGA  243 (611)
Q Consensus       169 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~---~~g~~--~~~~~l~~G~  243 (611)
                      .++++..++.||||||.|--+.+.+..+......+...+............++...|-..   ..+..  ..+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            456678899999999998767777666665554444333211111112233444444321   11111  1222334455


Q ss_pred             eEEEecC---ChHHHHHHHh----hhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          244 SVGYYHG---DLNALRDDLM----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       244 ~~~~~~~---~~~~~~~~i~----~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      . .+...   +...++..++    +.++..+++.|.++-.++..+++....+.                           
T Consensus       167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~---------------------------  218 (365)
T PF04443_consen  167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR---------------------------  218 (365)
T ss_pred             e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc---------------------------
Confidence            5 44433   5666665554    56799999999877766655444322111                           


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEec------CCCCH-HHHHHHHHHcCC----ceeeccccCCCCCceeeccCCCccc
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGG------APLST-EVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMCM  385 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G------~~l~~-~~~~~~~~~~~~----~v~~~yG~tE~g~~~~~~~~~~~~~  385 (611)
                              +       .+..+.+-.||      +.+++ +..+.+.+.||+    .+++.||+||.......+.....  
T Consensus       219 --------L-------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~--  281 (365)
T PF04443_consen  219 --------L-------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHF--  281 (365)
T ss_pred             --------C-------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCcc--
Confidence                    0       01233444443      45765 466667787887    69999999998877666533221  


Q ss_pred             cCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccC--------
Q 007257          386 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN--------  457 (611)
Q Consensus       386 ~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d--------  457 (611)
                           ...+.  +.+.| ++ +..+++.|+.|=|.+-.+... .|            -+..-|.|+|.+..+        
T Consensus       282 -----~~p~w--V~iRD-p~-tl~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g  339 (365)
T PF04443_consen  282 -----HVPPW--VIIRD-PE-TLEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKG  339 (365)
T ss_pred             -----cCCCe--EEEEC-CC-CCcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCccC
Confidence                 11233  66666 43 568889999999988775432 12            234679999988654        


Q ss_pred             CeEEEEeccCCeE
Q 007257          458 GVVKIIDRKKNLI  470 (611)
Q Consensus       458 G~l~~~GR~~d~i  470 (611)
                      .++.++||.+.-=
T Consensus       340 ~~f~vlGR~~~ae  352 (365)
T PF04443_consen  340 KYFEVLGRADGAE  352 (365)
T ss_pred             CEEEEEeCCCCCc
Confidence            2799999987543

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.74  E-value=1.5e-08  Score=77.19  Aligned_cols=68  Identities=24%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             HHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCC
Q 007257          482 YLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLR  558 (611)
Q Consensus       482 ~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  558 (611)
                      |||++|.+||+|.||+|++.++.   +.++|++++ ..                             ++|+++++ .+||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~-----------------------------~~i~~~~~-~~l~   49 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DE-----------------------------EEIRDHLR-DKLP   49 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HH-----------------------------HHHHHHHH-HHS-
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-ee-----------------------------cccccchh-hhCC
Confidence            79999999999999999998765   489999998 21                             34555554 5699


Q ss_pred             Ccceeee--EEEecCCCCCCCCccccccc
Q 007257          559 GFEHIKG--VILDPRPFDMERDLVTATLK  585 (611)
Q Consensus       559 ~~~~p~~--i~~~~~~~~~~~~P~t~~GK  585 (611)
                      +|++|+.  ++.+++.     +|+|++||
T Consensus        50 ~~~~P~~~~~v~~~~~-----lP~t~~GK   73 (73)
T PF13193_consen   50 PYMVPRRIRFVRLDEE-----LPRTPSGK   73 (73)
T ss_dssp             GGGS-SEEEEEEESSS-----EEBETTSS
T ss_pred             CcceeeEEEEccccCc-----CCCCCCCC
Confidence            9999944  4444442     59999998

...

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.56  E-value=1.3e-06  Score=93.31  Aligned_cols=161  Identities=20%  Similarity=0.180  Sum_probs=93.1

Q ss_pred             CCceeEEEEecCCCCHHHHHHHHHHcC-Cc-eeeccccCCCCCceeeccCCCccccCccCCCccCe-eEEEeecCCCC--
Q 007257          333 GGRLRLVISGGAPLSTEVEEFLRVTCC-AF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS-ELRLEEVPEMG--  407 (611)
Q Consensus       333 ~~~l~~i~~~G~~l~~~~~~~~~~~~~-~~-v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~-~v~i~~~~~~~--  407 (611)
                      -|+|+.|.+.++.-...-.+.+++.+| ++ +...|++||+-  +..+....    ...+.+.++. =.+.++.++..  
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~--i~i~~~~~----~~~~~l~~~~~ffEFip~~~~~~~  339 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGF--IGIPLDPE----DPGYVLAPDSGFFEFIPVDEDEQN  339 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEE--EEEES-CC----C--EEE-TTSSEEEEEE-STT---
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceE--EEEecCCC----CCceEeecCCeEEEEEeccCCccc
Confidence            379998887776666677777777775 33 45689999953  33332211    1111222221 33444433221  


Q ss_pred             ----C-----CCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc--CC--eEEEEeccCCeEEcCC
Q 007257          408 ----Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQ  474 (611)
Q Consensus       408 ----~-----~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~--dG--~l~~~GR~~d~i~~~~  474 (611)
                          .     ..+..|+.-||+|+..   .|.|.             |+.||+.++..  ++  .+.++||.+.++.+ .
T Consensus       340 ~~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~  402 (528)
T PF03321_consen  340 PSEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-F  402 (528)
T ss_dssp             ----SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-S
T ss_pred             ccCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-c
Confidence                1     1223566778888874   24443             89999999853  34  69999999999998 8


Q ss_pred             ceecCcHHHHHHHhcC-----cCcceEEEEec---CCCCeEEEEEecChH
Q 007257          475 GEYVALEYLENVYCVA-----PIIEDIWVYGD---SLKSMLVAVVVPCEE  516 (611)
Q Consensus       475 G~~v~~~~iE~~l~~~-----p~V~~~~v~~~---~~~~~~~a~vv~~~~  516 (611)
                      |++++-.+|++++.+.     -.+.+..+...   ..+.+.+.++++...
T Consensus       403 gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  403 GEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE  452 (528)
T ss_dssp             S--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred             eeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence            9999999999999654     33667777665   234577777777754

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.07  E-value=0.00032  Score=75.42  Aligned_cols=136  Identities=14%  Similarity=0.130  Sum_probs=79.1

Q ss_pred             HcCCc---eeEEEEecCCCCHHHHHHHHHHc-CC-ceeeccccCCCCCceeeccCCCccccCccCCC--ccCeeEEEeec
Q 007257          331 RLGGR---LRLVISGGAPLSTEVEEFLRVTC-CA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV--SVYSELRLEEV  403 (611)
Q Consensus       331 ~~~~~---l~~i~~~G~~l~~~~~~~~~~~~-~~-~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~--~~~~~v~i~~~  403 (611)
                      .+-|.   +..++.||..   .-...++..+ +. .+...|++||+-...-..+..   .+...+..  +.+.=.++++.
T Consensus       299 ~lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~---~p~~~~~~l~~~~~ffEFiP~  372 (597)
T PLN02249        299 KIWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMC---KPSEVSYTIMPNMAYFEFLPH  372 (597)
T ss_pred             HhCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCC---CCCCcceEecCCcEEEEeeec
Confidence            44467   5555666644   4555555555 33 356799999954222111100   00111111  12333344432


Q ss_pred             CCCC--------C---CCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccC----CeEEEEeccCC
Q 007257          404 PEMG--------Y---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKN  468 (611)
Q Consensus       404 ~~~~--------~---~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d----G~l~~~GR~~d  468 (611)
                      ++.+        .   ..+..|+.-||+|+..   .|.|.             |+.||+.++..-    =.|.+.||.+.
T Consensus       373 ~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~---~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~  436 (597)
T PLN02249        373 NHDGDGALDETSLVELADVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNV  436 (597)
T ss_pred             ccCCcccCCCCcEecHHHcCCCCeEEEEEEcc---cceeE-------------eecCCEEEEeeccCCCcEEEEEccCCc
Confidence            2211        0   1123456678888763   23332             899999998542    25899999999


Q ss_pred             eEEcCCceecCcHHHHHHHhc
Q 007257          469 LIKISQGEYVALEYLENVYCV  489 (611)
Q Consensus       469 ~i~~~~G~~v~~~~iE~~l~~  489 (611)
                      ++.+ .|+++.-.+++.++.+
T Consensus       437 ~ls~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        437 LLSI-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             ceec-ccccCCHHHHHHHHHH
Confidence            9997 9999999999998865

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.93  E-value=0.00089  Score=71.40  Aligned_cols=141  Identities=14%  Similarity=0.063  Sum_probs=86.2

Q ss_pred             HHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceee-ccccCCCCCceeeccCCCccccCccCCCccCee-EEEeecCCC
Q 007257          330 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ-GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE-LRLEEVPEM  406 (611)
Q Consensus       330 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~-~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~-v~i~~~~~~  406 (611)
                      ...-+++++|.+....-...-...++..+ |++++. .||+||+-...=..+.....  ...+...|++. .++++.+++
T Consensus       289 ~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~  366 (606)
T PLN02247        289 KRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKN  366 (606)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCC
Confidence            34558999998877666777777777655 666665 89999953222111111011  11222333332 223322221


Q ss_pred             CC---------------------------CCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc---
Q 007257          407 GY---------------------------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP---  456 (611)
Q Consensus       407 ~~---------------------------~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~---  456 (611)
                      +.                           ..+..|+.-||+|+.-   .|.+.             |+.||+.++..   
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~---~GLYR-------------YrlGDvv~V~GF~n  430 (606)
T PLN02247        367 NGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTF---TGLYR-------------YRVGDILMVTGFYN  430 (606)
T ss_pred             cccccccccccccccccccccccCceecHHHccCCCeEEEEEEec---CceEE-------------EecCCEEEEeeecC
Confidence            10                           1234566778888763   23222             89999988743   


Q ss_pred             -CCeEEEEeccCCeEEcCCceecCcHHHHHHHhc
Q 007257          457 -NGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  489 (611)
Q Consensus       457 -dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~  489 (611)
                       .=.|.+++|.+.++.+ .|+|++-.++-.++.+
T Consensus       431 ~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        431 NAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             CCceEEEEecCCceeec-ccccCCHHHHHHHHHH
Confidence             3469999999999998 9999999988887754

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.82  E-value=0.0032  Score=67.19  Aligned_cols=165  Identities=15%  Similarity=0.045  Sum_probs=96.2

Q ss_pred             HHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceee-ccccCCCCCceeeccCCCccccCccCCCccCee-EEEeecCCC
Q 007257          330 ARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ-GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE-LRLEEVPEM  406 (611)
Q Consensus       330 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~-~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~-v~i~~~~~~  406 (611)
                      ...-+++++|.+....-...-...++..+ |++++. .|++||+-...=..+.....  ...+...|++. .++++++++
T Consensus       300 ~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~--~~sy~L~p~~~yFEFip~~~~  377 (612)
T PLN02620        300 TRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPS--EVSYTLIPTMAYFEFLPVHRN  377 (612)
T ss_pred             HHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCcc--cceeeecCCcEEEEEeeccCc
Confidence            44558999988877766777667776555 676555 89999953322111111111  11122333332 223321111


Q ss_pred             C----------------------CCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc----CCeE
Q 007257          407 G----------------------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVV  460 (611)
Q Consensus       407 ~----------------------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----dG~l  460 (611)
                      +                      ...+..|+.-||+|+..   .|.+.             |+.||+.++..    .=.|
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~---~GLyR-------------YrlGDvv~V~Gf~n~~P~~  441 (612)
T PLN02620        378 NGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY---AGLYR-------------YRVGDVLRVAGFKNKAPQF  441 (612)
T ss_pred             ccccccccccccccccccCccccHHHccCCCeEEEEEEec---CceEE-------------EecCCEEEEeeecCCCceE
Confidence            0                      01134566778888763   23222             89999988743    3369


Q ss_pred             EEEeccCCeEEcCCceecCcHHHHHHHhcCcC--------cceEEEEec--CCCCeEEEEEec
Q 007257          461 KIIDRKKNLIKISQGEYVALEYLENVYCVAPI--------IEDIWVYGD--SLKSMLVAVVVP  513 (611)
Q Consensus       461 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~--------V~~~~v~~~--~~~~~~~a~vv~  513 (611)
                      .+++|.+.+..+ .|+|++-.++-.++.+.-.        +.|......  ..+.+-+.++++
T Consensus       442 ~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYvl~~El  503 (612)
T PLN02620        442 SFICRKNVVLSI-DSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYVLFWEL  503 (612)
T ss_pred             EEEeecCceeec-ccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceEEEEEE
Confidence            999999999998 9999999888777744221        223332222  224577777776

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=97.10  E-value=0.0025  Score=51.15  Aligned_cols=88  Identities=22%  Similarity=0.074  Sum_probs=52.3

Q ss_pred             ceecCcHHHHHHHhcCcCcc-eEEEEe--cCCCCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 007257          475 GEYVALEYLENVYCVAPIIE-DIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  551 (611)
Q Consensus       475 G~~v~~~~iE~~l~~~p~V~-~~~v~~--~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  551 (611)
                      |.+|+|.+||++|.++|++. +..++-  ....+.+...|+..++..          .+.   ....++.+.+.+.|++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~----------~~~---~~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS----------DDA---EDLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC----------TTH---HHHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC----------cch---HHHHHHHHHHHHHHHhh
Confidence            78999999999999999998 444432  233357888888877531          000   02345666777777666


Q ss_pred             HHhCCCCCcceeeeEEEecCCCCCCCCccccccccch
Q 007257          552 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  588 (611)
Q Consensus       552 ~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R  588 (611)
                      +.   +.    | .+.+++    .+++|++ .||..|
T Consensus        68 lg---v~----~-~V~lv~----~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   68 LG---VR----P-EVELVP----PGTLPRS-EGKAKR   91 (96)
T ss_dssp             HS---S-----E-EEEEE-----TT-S----SSSS-S
T ss_pred             cC---ce----E-EEEEEC----CCCccCC-CCcceE
Confidence            53   21    3 577775    3788998 678776

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.27  E-value=0.28  Score=50.38  Aligned_cols=89  Identities=9%  Similarity=-0.020  Sum_probs=74.0

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--hHHHHHHHHHhcCCEEeeCCCCCChhHHHHHHhhcCccEE
Q 007257           26 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV  103 (611)
Q Consensus        26 ~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~l  103 (611)
                      --+|+.|....+..+|+.|...|..+||+|.....-+.  .-+.+.+|+.++|++++|+++.. .+.-..++++.++.+|
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEE
Confidence            47899999999999999999999999999988766322  22678899999999999998844 4455678999999999


Q ss_pred             EEcchhHHHHhc
Q 007257          104 FVQDKKVKELLS  115 (611)
Q Consensus       104 i~~~~~~~~~~~  115 (611)
                      .+.+...-.+.+
T Consensus       187 ~~tps~~l~lae  198 (438)
T COG1541         187 AATPSYLLYLAE  198 (438)
T ss_pred             EEChHHHHHHHH
Confidence            999987765533

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=84.14  E-value=8  Score=40.91  Aligned_cols=89  Identities=12%  Similarity=0.034  Sum_probs=66.2

Q ss_pred             CCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh--HHHHHHHHHhcCCEEeeCCCCCChhHHHHHH
Q 007257           20 GKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVPLYDTLGPGAVNFIL   95 (611)
Q Consensus        20 ~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l   95 (611)
                      |.+|..  ..+|..++...+...+..+...|+++||++.+..+.+..  .....+++..+|+.+++...   ......++
T Consensus        96 GTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i  172 (445)
T TIGR03335        96 GTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRII  172 (445)
T ss_pred             CCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHH
Confidence            445544  357889999888888888888899999999998876643  23456788899998877643   23446778


Q ss_pred             hhcCccEEEEcchhHH
Q 007257           96 DHAEIDFVFVQDKKVK  111 (611)
Q Consensus        96 ~~~~~~~li~~~~~~~  111 (611)
                      ++.++.+++.......
T Consensus       173 ~~~~~t~l~~~ps~ll  188 (445)
T TIGR03335       173 ESYRPTGIVASVFKLL  188 (445)
T ss_pred             HHhCCCEEEECHHHHH
Confidence            8999999887665443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=82.99  E-value=8.2  Score=40.47  Aligned_cols=94  Identities=16%  Similarity=0.127  Sum_probs=69.4

Q ss_pred             cCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--hHHHHHHHHHhcCCEEeeCCCCCChhHHHHH
Q 007257           19 DGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFI   94 (611)
Q Consensus        19 ~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~   94 (611)
                      -|.+|..+  .+|..++...+..++..+...|+++||++....+.+.  ......++...+|+.++++++.. .+.+...
T Consensus        84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  162 (422)
T TIGR02155        84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL  162 (422)
T ss_pred             CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence            45566544  4566777666667777888889999999887665442  22334667889999999887764 4778889


Q ss_pred             HhhcCccEEEEcchhHHHH
Q 007257           95 LDHAEIDFVFVQDKKVKEL  113 (611)
Q Consensus        95 l~~~~~~~li~~~~~~~~~  113 (611)
                      |++.++++++........+
T Consensus       163 i~~~~~t~l~~~Ps~l~~L  181 (422)
T TIGR02155       163 IQDFKPDIIMVTPSYMLNL  181 (422)
T ss_pred             HHHHCCCEEEEcHHHHHHH
Confidence            9999999999988776654

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=82.70  E-value=20  Score=38.43  Aligned_cols=119  Identities=9%  Similarity=-0.033  Sum_probs=79.7

Q ss_pred             CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCEEeeCC
Q 007257            7 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY   83 (611)
Q Consensus         7 pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~   83 (611)
                      ++.++++.-+  .|.+|..+  .+|+..+...+.....   ..|++++|++...++..-.+ +...++++..|+.++..+
T Consensus       166 ~~~~~~i~~T--SGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~  240 (521)
T PRK06187        166 ENDAAAMLYT--SGTTGHPKGVVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPR  240 (521)
T ss_pred             ccceEEEEEC--CCCCCCCceEEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecC
Confidence            3456665542  45555443  6788888766655544   44889999998887765332 344455888899988776


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcchhHHHHhccccc---cccCccEEEEec
Q 007257           84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR---SAQRLRVMVCFT  131 (611)
Q Consensus        84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~~i~~~~  131 (611)
                      .. +.+.+...+++.++..+++.......+......   ....++.++...
T Consensus       241 ~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~G  290 (521)
T PRK06187        241 RF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGG  290 (521)
T ss_pred             CC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcC
Confidence            64 888999999999999999988877666443322   234445544433

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=81.48  E-value=17  Score=37.98  Aligned_cols=114  Identities=10%  Similarity=0.013  Sum_probs=78.1

Q ss_pred             CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch-hHHHHHHHHHhcCCEEeeCC
Q 007257            7 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPLY   83 (611)
Q Consensus         7 pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~~~l~   83 (611)
                      +++++++..+  .|.+|..  ..+|+..+...+..++..+   +++++|++...++..- -.+..+++.+..|+..+..+
T Consensus       110 ~~~~~~i~~T--SGtTG~PK~v~~s~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  184 (436)
T TIGR01923       110 MDQIATLMFT--SGTTGKPKAVPHTFRNHYASAVGSKENL---GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVD  184 (436)
T ss_pred             cCceEEEEeC--CCCCCCCcEEEEehHHHHHHHHHHHhhc---CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecc
Confidence            4566665542  4555543  4788988887766666544   7899999988777542 22345688889999988876


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEE
Q 007257           84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC  129 (611)
Q Consensus        84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~  129 (611)
                      +.   +.+...+.+.++.++.........+....... ..++.++.
T Consensus       185 ~~---~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~-~~l~~~~~  226 (436)
T TIGR01923       185 KF---NQLLEMIANERVTHISLVPTQLNRLLDEGGHN-ENLRKILL  226 (436)
T ss_pred             hH---HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC-CceEEEEE
Confidence            53   38888999999999999888776665443322 44555544

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=81.42  E-value=18  Score=38.85  Aligned_cols=104  Identities=14%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--hHHHHHHHHHhcCCEEee
Q 007257            6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP   81 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~~~   81 (611)
                      .++.++++.-+  .|.+|..  ..+|+..+...+......   .+++++|++...++..-  .+...+++++..|+.+++
T Consensus       164 ~~~~~a~i~~T--SGtTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~  238 (513)
T PRK07656        164 DPDDVADILFT--SGTTGRPKGAMLTHRQLLSNAADWAEY---LGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILP  238 (513)
T ss_pred             CCCceEEEEeC--CCCCCCCCEEEEecHHHHHHHHHHHHh---hCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEe
Confidence            34556655442  3555544  367888877655544433   37889999988877643  344567889999998877


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  115 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~  115 (611)
                      . +..+++.+...+++.++.+++........+..
T Consensus       239 ~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  271 (513)
T PRK07656        239 L-PVFDPDEVFRLIETERITVLPGPPTMYNSLLQ  271 (513)
T ss_pred             c-CcCCHHHHHHHHHHhCCeEEechHHHHHHHHc
Confidence            5 56788899999999999999998887766644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	611
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-20
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-20
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		6e-20
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		6e-18
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-17
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		7e-16
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-15
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		2e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		2e-15
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		8e-15
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		8e-15
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		9e-15
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-14
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		1e-13
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-13
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-13
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-13
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-12
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		7e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-11
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		2e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		3e-11
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		9e-10
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-09
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		6e-09
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		5e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-06
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		3e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		9e-06
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		2e-05
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		2e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 137/520 (26%), Positives = 210/520 (40%), Gaps = 114/520 (21%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +       L P
Sbjct: 49  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 89  GAVNFILDHAEIDFVFVQDKKV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 145
             + +IL+HAE D V + D  +    E +  + ++ Q   VM       A +  +A +  
Sbjct: 109 KEIAYILNHAE-DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA 163
Query: 146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATF 199
                      LG+  +   +P +    C + YT+GT+G PKGVV +H  +      A+ 
Sbjct: 164 -----------LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL 210
Query: 200 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD- 258
           V G  L         +  DV L  +P+ H+       +     A++      L   R D 
Sbjct: 211 VDGTAL---------SEKDVVLPVVPMFHV-----NAWCLPYAATLVGAKQVLPGPRLDP 256
Query: 259 --LMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 312
             L+EL      T  AGVP V+  + + ++     L+ LRR                   
Sbjct: 257 ASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRR------------------- 297
Query: 313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 372
                                    LV+ G A   + +  F R+     + QGYGLTET 
Sbjct: 298 -------------------------LVVGGSAAPRSLIARFERMGVE--VRQGYGLTETS 330
Query: 373 GPTTVCF----------PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVC 420
                 F           +++ +    G P+ +   +RL    E G   P D    GEV 
Sbjct: 331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQ 387
Query: 421 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
           ++G  +  GYY N + TR ++  DG+F TGDI      G V+I DR K+LIK S GE+++
Sbjct: 388 LKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWIS 446
Query: 480 LEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEE 516
              LEN     P +++  V        +   +AVVVP  E
Sbjct: 447 SVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE 486

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 138/333 (41%), Gaps = 60/333 (18%)
Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           ++YTSGT+G PKG V+    +AT +   D   D ++   T +DV +  LPL H+   V+ 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 236 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
                RRG SV +       G    L D       T+L GVP ++ +I E +    E   
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
                                        LA  LA            RL++SG A L   
Sbjct: 267 -----------------------------LAKALAG----------ARLLVSGSAALPVH 287
Query: 350 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 409
             E +       +++ YG+TET   T+V   D     GT G      ELRL E      +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIA 346
Query: 410 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 468
            LD    GE+ VRG  LF+ Y   PD T  +   DG+F TGD+    P+G V+I+ RK  
Sbjct: 347 ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT 406
Query: 469 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 501
            +  S G  +    +EN     P + +  V G+
Sbjct: 407 DLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 72/334 (21%)
Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 234
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 235 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 293
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 294 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 353
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 273 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 300
Query: 354 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 406
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360
Query: 407 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 466
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I DR 
Sbjct: 361 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL 412
Query: 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           K++I IS GE V    +E+V    P + ++ V G
Sbjct: 413 KDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGI 146
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 201
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H  +A  F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 202 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 261
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 262 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 321
               L++G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 261 ----LISGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 295
Query: 322 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 376
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 296 LFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 355
Query: 377 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
           +  P      G  G V  + E ++ ++ + G + L     GE+ VRG  + SGY  NP+ 
Sbjct: 356 IT-PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 437 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFD 471
Query: 496 IWVYG---DSLKSMLVAVVV 512
             V G   D    +  AVVV
Sbjct: 472 AGVAGLPDDDAGELPAAVVV 491

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 154/345 (44%), Gaps = 71/345 (20%)
Query: 169 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDKMTVDDVYLS 222
            P ++  + Y+SGT+G PKGV+LTH+ + T V+        +L+          DDV L 
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-------DDVILC 275
Query: 223 FLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 280
            LP+ HI     I     R GA++      ++N L + +   K T+   VP +   I + 
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335
Query: 281 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 340
            +                  KY L+                              +R+V 
Sbjct: 336 SETE----------------KYDLS-----------------------------SIRVVK 350
Query: 341 SGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV--GTAGPVSV 394
           SG APL  E+E+ +      A L QGYG+TE  GP    ++ F  E   V  G  G V  
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVR 409
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 453
            +E+++ + P+ G S   + P GE+C+RG  +  GY  NP  T E+I  DGW HTGDIG 
Sbjct: 410 NAEMKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467
Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 498
           I  +  + I+DR K LIK  +G  VA   LE +    P I D+ V
Sbjct: 468 IDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAV 511

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
           ++  I+YTSGT+G  KG  L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 231 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
                                            LL   ++     G  RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTKETTGHXRLFISGSAPLLA 282
Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
           +            +++ YG TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGK 340
Query: 409 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK 466
             P  D   G + V+G  +F GY++ P+ T+     DG+F TGD+G+I   G V I+ R 
Sbjct: 341 ELPRGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRG 398
Query: 467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           K+L+ I+ G  V  + +E+     P + +  V G
Sbjct: 399 KDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIG 431

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 231 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 350 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 467
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 525
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 526 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 559
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 231 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 350 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 467
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 525
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 526 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 559
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 231 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS--------- 300
Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 350 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 467
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 525
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 526 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 559
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 336 LRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMV-------- 386
           LR++ SGGAPL  E+E+ +R     A L QGYG+TE  GP        MC+         
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 387 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 442
             G  G V   +E+++ + PE G S P + P  GE+C+RG  +  GY  +P+ T  +I  
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 443 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           +GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D  V G
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVG 466

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 169/445 (37%), Gaps = 88/445 (19%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY ++     +    L A G   G RV +   N  ++         L  + VP+   L  
Sbjct: 31  TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 90
Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             V+FIL  +          KV    +P       +R                V   I  
Sbjct: 91  PEVSFILSDS--------GSKVVIYGAPSAPVIDAIRAQA--------DPPGTVTDWIGA 134
Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
            S  E L     +E  +      N+  IMYTSGT+G PKGVV THE++ +  S     +D
Sbjct: 135 DSLAERLRSAAADEPAVECGGDDNLF-IMYTSGTTGHPKGVVHTHESVHSAASSWASTID 193
Query: 209 -QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTL 266
            ++ D++      L  LP+ H+       +   RG + +     D   +   ++E +  +
Sbjct: 194 VRYRDRL------LLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCI 247
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
              VP +   +                                    R+    A+L A  
Sbjct: 248 GGAVPAILNFM------------------------------------RQVPEFAELDA-- 269
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL--VQGYGLTETCGPTTVCFP-DEM 383
                     R  I+GGAP+    E  +++     +  VQGY LTE+CG  T+    D +
Sbjct: 270 -------PDFRYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDAL 319
Query: 384 CMVGTAGPVSVYSELRLEE----VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 439
              G+AG  ++++++ +      + E G         GEV ++   L   Y+  P+ TR+
Sbjct: 320 RKAGSAGRATMFTDVAVRGDDGVIREHGE--------GEVVIKSDILLKEYWNRPEATRD 371
Query: 440 SIIDGWFHTGDIGQILPNGVVKIID 464
           +  +GWF TGDIG+I   G + I D
Sbjct: 372 AFDNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 509
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483
Query: 510 VVV 512
           VVV
Sbjct: 484 VVV 486

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 366
Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 367 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 424
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 509
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 425 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 483
Query: 510 VVV 512
           VVV
Sbjct: 484 VVV 486

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 371
Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 372 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 509
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 430 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 488
Query: 510 VVV 512
           VVV
Sbjct: 489 VVV 491

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 176/478 (36%), Gaps = 84/478 (17%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+++      ++ S L   G   G RV I   NC + +E + A   +  I +P       
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP------- 85
Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             VN+ L+  EI FV         +   D R      V     SL   +K  A+  G  P
Sbjct: 86  --VNYRLNADEIAFVLGDGAPSVVVAGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGP 139
Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
           ++   F  L              +   I++T+   G P+G +++   +    S +   +D
Sbjct: 140 FA--PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL---VD 194
Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRG-ASVGYYHGDLNALRDDLMELKPTLL 267
            +  ++T  DV L  LPL H+    +     + G ASV     D      D+   K T++
Sbjct: 195 AW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252
Query: 268 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 327
           A                  E  P+   I D                 +A+P A L + R 
Sbjct: 253 A------------------EFAPMLGNILD-----------------QAAP-AQLASLRA 276
Query: 328 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMV 386
           V              G      +E F      A     +G +ET G +T   + D     
Sbjct: 277 VT-------------GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR---- 319
Query: 387 GTAGPVSVYSEL--RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 444
               P S    L  R   V +    PL     GE+ +RG T+F GY+ N   T+ +  +G
Sbjct: 320 ----PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
Query: 445 WFHTGDIGQILPNGVVKIIDR--KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           W HTGD+G+   +G +    R  +K LIK + GE V    +E      P I D  V G
Sbjct: 376 WHHTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIG 432

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 88/186 (47%), Gaps = 7/186 (3%)
Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 393
            L  + SGGAPL+ EV E   +      + QGYGLTET     +         G  G V 
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVV 401
Query: 394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 452
            +   ++ ++ + G + L     GE+CV+G  +  GY  NP+ T   I  DGW H+GDI 
Sbjct: 402 PFFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIA 459
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAV 510
               +G   I+DR K+LIK  +G  V    LE++    P I D  V G  D     L A 
Sbjct: 460 YYDKDGYFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAA 518
Query: 511 VVPCEE 516
           VV  EE
Sbjct: 519 VVVLEE 524

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 187/510 (36%), Gaps = 100/510 (19%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +          +P+   L  
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             ++++L           D     LL+      Q   +    T+L  + +    +    P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
            +              I P  P     IMYTSGT+G PKG + TH  I   V  VD    
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 268
            F D+    D +LS           +  Y F    +  +Y   LNA R  + + + TLL 
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAARLIIAD-EHTLLD 685
Query: 269 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 328
                 E++ + I +    +      +F+ L      WM                     
Sbjct: 686 T-----ERLTDLILQENVNVMFATTALFNLLTDAGEDWMK-------------------- 720
Query: 329 KARLGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEM 383
                  LR ++ GG   S   V + LR+     L+  YG TE     T       PD +
Sbjct: 721 ------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 384 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 443
             +    P+S  S   L E  ++   P      GE+C+ G  +  GY    DLT+E  I+
Sbjct: 775 SSLPIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIE 830
Query: 444 GWF-------HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 496
             F        TGD+ + LP+G ++   R  + +KI +G  + LE +E      P ++D 
Sbjct: 831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDA 889
Query: 497 WVYGD-------SLKSMLVAVVVPCEEDTK 519
            V  D       S+ + LV       ED K
Sbjct: 890 VVVADRHESGDASINAYLVNRTQLSAEDVK 919

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 231 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 409 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 466
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 467 KNLI 470
            +L+
Sbjct: 399 XDLV 402

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 231 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 409 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 466
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 467 KNLI 470
            +L+
Sbjct: 399 XDLV 402

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 230
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 231 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 409 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 466
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 467 KNLI 470
            +L+
Sbjct: 399 XDLV 402

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89  GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
              +     LR V   GA +   V E +        V GYG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89  GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89  GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
           GT      +SE+R+  +       + +   GE+ V    + F GY   P+ T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89  GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 89  GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 147
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 148 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 207
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 208 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 445
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 335 RLRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPV 392
            L+ ++ GGA LS T +E  L+     +    +G+TETC       P+ +     T G  
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIY--NSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 452
           S   +++++   + G+        GE+ ++G  + +GY    DLT  +  +G+F+TGDI 
Sbjct: 333 SANVDVKIKNPNKEGH--------GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIA 383
Query: 453 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
           +I   G V I DR+K+LI IS GE +    +E V    P I D
Sbjct: 384 EIDHEGYVMIYDRRKDLI-ISGGENIYPYQIETVAKQFPGISD 425

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 172/477 (36%), Gaps = 78/477 (16%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV---------P 81
Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA---VQTG 145
             +N  L  AE+  +  + +    +++   + A  +     F S +  +       V+ G
Sbjct: 82  ALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAI-----FQSGSGARIIFLGDLVRDG 136
Query: 146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 205
            +PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    L
Sbjct: 137 -EPYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----L 183
Query: 206 FLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 264
           F   Q   +    +V L   PL H+               VG++   + AL  D      
Sbjct: 184 FXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD------ 222
Query: 265 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 324
                          G    +EE RP+     DAL   +   +   +            A
Sbjct: 223 ---------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAA 262
Query: 325 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 384
                +     LR V   GA     V E +        V  YG TE         P    
Sbjct: 263 AHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPK--- 319
Query: 385 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIID 443
             GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + D
Sbjct: 320 -TGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 444 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 500
           GW+ T D+    P G V+I+ R  + I IS GE +    +E V   AP + ++ V G
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 394
           L+++  GGA  S E    ++      L Q +G+ E     T     E  +V T G P+S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP 359
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 453
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 394
           L+++  GGA  S E    ++      L Q +G  E     T     E  +V T G P S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSP 359
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 453
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 495
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 336 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 393
           L+  +  G PL+ EV   FL  T    L++G+G TET   T   FP      G+ G P  
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETV-VTIATFPWMEPKPGSIGKPTP 400
Query: 394 VYS------ELRLEEVPEMG---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 444
            Y       + RL EV E G    + ++  P G        LF  Y K+P+ T E+  DG
Sbjct: 401 GYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDG 452
Query: 445 WFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           ++HTGD+  +  +G +  + R  ++IK S
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS 481

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/473 (19%), Positives = 180/473 (38%), Gaps = 80/473 (16%)
Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
            A   +LD A             + +  + +    L +       TA++     +    P
Sbjct: 98  PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
               E + L + +  +    +  +I  + YTSG++  PKGV ++H  +   +  ++    
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 209 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 261
            F      + +  S+LP  H       IL  +         +   +    L+ L+  + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 262 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALYKYKLAWMN 308
            K T+           V R+ E+  EG+       A     P+R    +  Y+   A+  
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ---AFKE 315
Query: 309 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 368
            G+++    P   L               L+++GG P S+    +  +T      Q + +
Sbjct: 316 FGFRKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRV 360
Query: 369 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 428
                 +    P    +V +  P+    E+++ +   +   P D    GE+ V+  ++  
Sbjct: 361 HFADDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAK 411
Query: 429 GYYKNPDLTRESIIDG---------WFHTGDIGQILPNGVVKIIDRKKNLIKI 472
           GY+  P+ TR +             +  TGD+G +  N +  +  R K+LI I
Sbjct: 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY-VTGRIKDLIII 463

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 336 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAG 390
           L+L+  GGA     L+ +V E L       L Q +G+ E     T +   DE        
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCK----LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364
Query: 391 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 449
           P+S   E++   + +  Y  + +   G +  RG   F GYY++P+   +    D ++++G
Sbjct: 365 PISSDDEIK---IVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 450 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVA 509
           D+ Q  P+G ++++ R K+ I    GE +A E +E +  + P         + + + LVA
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHP---------EVMHAALVA 471
Query: 510 VV 511
           +V
Sbjct: 472 IV 473

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 336 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 394
           L+L+  GGA LS  +   +       L Q +G+ E     T        ++ T G P+  
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP 363
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 453
             E+    V +   +PL     G +  RG   F GYYK+P     +   +G++ +GD+  
Sbjct: 364 DDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420
Query: 454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 493
           I P G + +  R+K+ I    GE +A E +EN+    P +
Sbjct: 421 IDPEGYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAV 459

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 363 VQGYGLTET--CGPTTVCFPDEMCM-VGTAGPVS------VYSELRLEEVPEMGYSPLDD 413
           +  YG TET  C  T V   + +   V    P+       V   L+L+ V E        
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE-------- 371
Query: 414 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVKIIDRK 466
              GE+C+ G+ L  GY+K P+LT +  +D  F        TGD  + L +G ++ + R 
Sbjct: 372 --AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 467 KNLIKISQGEYVALEYLENV 486
            N +KI +G  V LE +E++
Sbjct: 430 DNQVKI-RGHRVELEEVESI 448

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 119/311 (38%), Gaps = 57/311 (18%)
Query: 172 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 231
           +I   +Y+SG++G PKG V TH   A      +L+       +  +DV  S   L     
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAKPILG-IAENDVVFSAAKL----- 234
Query: 232 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 291
                 FF  G   G            LM  +PT             + I   L E RP 
Sbjct: 235 ------FFAYGLGNGLTFPLSVGATAILMAERPTA------------DAIFARLVEHRPT 276
Query: 292 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 351
                  LY                   A++L    + AR    +R+  S G  L  E+ 
Sbjct: 277 VFYGVPTLY-------------------ANMLVSPNLPARADVAIRICTSAGEALPREIG 317
Query: 352 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--GTAG-PVSVYSELRLEEVPEMGY 408
           E         ++ G G TE      +   +    V  GT G PV  Y E+ L +  E G+
Sbjct: 318 ERFTAHFGCEILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGY-EIELRD--EAGH 371
Query: 409 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 468
           + + D   G++ ++G +    Y+ N + +R + +  W  +GD    LPNG      R  +
Sbjct: 372 A-VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDD 430
Query: 469 LIKISQGEYVA 479
           ++K+S G+YV+
Sbjct: 431 MLKVS-GQYVS 440

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 336 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 394
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 445
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKI 472
           + TGD+ +   +GV++ + R  + +KI
Sbjct: 448 YRTGDLARRRADGVLEYVGRADDQVKI 474

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 364 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR---LEEVPEMGYSPLDDPPCGEVC 420
           Q +G TE C   T   P  +    T G      EL+   LE+  E+G         GE+ 
Sbjct: 333 QIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGE-----SGEIV 387
Query: 421 VRGKTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 475
           +RG  +F GY+K     +E          +F TGD+G I   G +   DR K +IK  +G
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KG 446
Query: 476 EYVALEYLENVYCVAPIIEDIWVYG 500
             +A   LE +      + D+ V G
Sbjct: 447 YTIAPFELEALLXKHEAVXDVAVIG 471

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 402 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 461
           E+      P+ +   G +C+ G +L SGY+ +     E    GW  TGD+G +L +G + 
Sbjct: 396 EIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLY 454
Query: 462 IIDRKKNLIKI 472
           +  R K+LI I
Sbjct: 455 VTGRIKDLIII 465

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	611
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-69
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	6e-66
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-64
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-64
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-59
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-59
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	9e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	9e-58
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-57
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	7e-56
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-53
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	5e-52
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-51
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	9e-46
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-31
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	9e-29
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	5e-28
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-10
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-10
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	3e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	3e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-06
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  233 bits (597), Expect = 1e-69
 Identities = 105/494 (21%), Positives = 166/494 (33%), Gaps = 100/494 (20%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
                P                     TY ++     +    L A G   G RV +   N
Sbjct: 25  RATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALGIAKGDRVALLMPN 77

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA 121
             ++         L  + VP+   L    V+FIL  +    V                  
Sbjct: 78  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA----PSAP----VI 129

Query: 122 QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSG 181
             +R                V   I   S  E L     +E   +     +   IMYTSG
Sbjct: 130 DAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVECGGDDNLFIMYTSG 180

Query: 182 TSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 241
           T+G PKGVV THE++ +  S     +D     +   D  L  LP+ H+       +   R
Sbjct: 181 TTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFHVAALTTVIFSAMR 235

Query: 242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 300
           G ++      D   +   ++E +  +   VP +                           
Sbjct: 236 GVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL-------------------------- 269

Query: 301 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA 360
                  N             +    +         R  I+GGAP+   + +        
Sbjct: 270 -------NF------------MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIE 310

Query: 361 FLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDP 414
             VQGY LTE+CG  T+   ++ +   G+AG  ++++++ +                   
Sbjct: 311 V-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRE---------H 360

Query: 415 PCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ 474
             GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I DR K++I IS 
Sbjct: 361 GEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMI-ISG 419

Query: 475 GEYVALEYLENVYC 488
           G        ENVY 
Sbjct: 420 G--------ENVYP 425

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  226 bits (579), Expect = 3e-67
 Identities = 93/470 (19%), Positives = 140/470 (29%), Gaps = 96/470 (20%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +          
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL------- 83

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             +N  L  AE+  +                        V               +G + 
Sbjct: 84  --LNPRLKSAELAELIK-----------RGEM----TAAVIAVGRQVADAIFQSGSGARI 126

Query: 149 YSWDEFLHLGKVNEMEILPPQ----PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 204
               + +  G+              P     I YTSGT+G PK  ++      + V  + 
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM- 185

Query: 205 LFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 262
               Q   +    +V L  +PL H+     V+       G  V             + + 
Sbjct: 186 --STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQE 243

Query: 263 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 322
           + T L   P                                               LA  
Sbjct: 244 QVTSLFATPTHL-------------------------------DA-----------LAAA 261

Query: 323 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 381
            A      +L   LR V   GA +   V E   +       V  YG TE      +  P 
Sbjct: 262 AAHAGSSLKL-DSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK 319

Query: 382 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP--CGEVCVRG-KTLFSGYYKNPDLTR 438
                GT      +SE+R+  V   G           GE+ V    + F GY   P  T 
Sbjct: 320 ----TGTEMAPGFFSEVRI--VRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373

Query: 439 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 488
           E + DGW+ T D+    P G V+I+ R  ++I IS G        EN++ 
Sbjct: 374 EKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGG--------ENIHP 414

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  223 bits (570), Expect = 6e-66
 Identities = 89/465 (19%), Positives = 156/465 (33%), Gaps = 87/465 (18%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY+ +Y E   +   L    A    RVG+Y  N  Q +  + AC   ++    +   L P
Sbjct: 28  TYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTP 84

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             +   +   ++  +F        L     +      +      +T              
Sbjct: 85  NEMTNQMRSIDVQLIFCTL----PLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
            S +  +     + +        +I +IM+TSGT+G  K V  T         G    L 
Sbjct: 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLG 200

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLL 267
                   D  +LS LP+ HI    +       G +V      +   +   +   + T +
Sbjct: 201 -----FDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHI 255

Query: 268 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 327
           + VP+    +          ++      ++                              
Sbjct: 256 SLVPQTLNWL----------MQQGLHEPYN------------------------------ 275

Query: 328 VKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCM 385
                   L+ ++ GGA LS  + E  L+      +   +G+TETC       P+     
Sbjct: 276 --------LQKILLGGAKLSATMIETALQYNLP--IYNSFGMTETCSQFLTATPEMLHAR 325

Query: 386 VGTAGPVSVYSELRL--EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 443
             T G  S   ++++                  GE+ ++G  + +GY    D    +  +
Sbjct: 326 PDTVGMPSANVDVKIKNPNKEGH----------GELMIKGANVMNGYLYPTD-LTGTFEN 374

Query: 444 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 488
           G+F+TGDI +I   G V I DR+K+LI IS G        EN+Y 
Sbjct: 375 GYFNTGDIAEIDHEGYVMIYDRRKDLI-ISGG--------ENIYP 410

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  219 bits (561), Expect = 1e-64
 Identities = 90/470 (19%), Positives = 157/470 (33%), Gaps = 100/470 (21%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+++      ++ S L   G   G RV I   NC + +E + A   +  I +P+   L  
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNA 92

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + F+L       V       +++++    S   ++                   G   
Sbjct: 93  DEIAFVLGDGAPSVVVA-GTDYRDIVAGVLPSLGGVKKAYA--------------IGDGS 137

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
             +  F  L              +   I++T+   G P+G +++   +    S +     
Sbjct: 138 GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR 197

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLL 267
                +T  DV L  LPL H+    +     + G +       D      D+   K T++
Sbjct: 198 -----LTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252

Query: 268 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 327
           A    +   I       L++  P                             A L     
Sbjct: 253 AEFAPMLGNI-------LDQAAP-----------------------------AQL----- 271

Query: 328 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG 387
                   LR V     P +  +E F      A     +G +ET G +T     +     
Sbjct: 272 ------ASLRAVTGLDTPET--IERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PK 321

Query: 388 TAGPVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 440
           +AG    +  + +       +P  E+G          E+ +RG T+F GY+ N   T+ +
Sbjct: 322 SAGRPLFWRTVAVVDAEDRPLPPGEVG----------EIVLRGPTVFKGYWNNAAATQHA 371

Query: 441 IIDGWFHTGDIGQILPNGVVKIIDR--KKNLIKISQGEYVALEYLENVYC 488
             +GW HTGD+G+   +G +    R  +K LI  + G        ENVY 
Sbjct: 372 FRNGWHHTGDMGRFDADGYLFYAGRAPEKELI-KTGG--------ENVYP 412

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  218 bits (559), Expect = 3e-64
 Identities = 110/472 (23%), Positives = 172/472 (36%), Gaps = 104/472 (22%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y E+     ++ + L A G + G RV        + +    A      + +PL      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
              N      E+D+              D       +++VC  S       +A + G   
Sbjct: 84  ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125

Query: 149 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 200
                    S  +            +     ++  I+YTSGT+G  KG +L+H+ +A+  
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 201 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 258
             +  +        T DDV +  LP+ H   L        F RG+ +     D + +  D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238

Query: 259 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 318
           LM  + T+L GVP  +                                            
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253

Query: 319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 377
              LL   ++     G +RL ISG APL  +   E+   T  A L + YG+TET    T 
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310

Query: 378 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
              D   + G  GP       R+    PE G   L     G + V+G  +F GY++ P+ 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367

Query: 437 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 487
           T+     DG+F TGD+G+I   G V I+ R K+L+ I+ G         NVY
Sbjct: 368 TKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY 410

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  205 bits (524), Expect = 2e-59
 Identities = 100/465 (21%), Positives = 147/465 (31%), Gaps = 107/465 (23%)

Query: 34  YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 93
           Y E+     A  A       RV ++     +   A+ A     +  VPL    G   +  
Sbjct: 51  YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109

Query: 94  ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 153
           IL  +    V            PD      L  +         +  +             
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150

Query: 154 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 213
                             +   ++YTSGT+G PKG V+    +AT +  +          
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192

Query: 214 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 271
            T +DV +  LPL H+  L   I     R G+                +    T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251

Query: 272 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 331
            ++ +                                          +A+ L      A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269

Query: 332 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 390
                RL++SG A L     E     T    + + YG+TET    T    D     GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327

Query: 391 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 444
                 ELRL       +       LD    GE+ VRG  LF+ Y   PD T  +   DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382

Query: 445 WFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYC 488
           +F TGD+    P+G V+I+ RK  +LI  S G          +  
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGA 418

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  206 bits (526), Expect = 3e-59
 Identities = 88/468 (18%), Positives = 159/468 (33%), Gaps = 99/468 (21%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
            + E+ E   ++ S +   G   G  VG+   N   +V  + A   ++   VP       
Sbjct: 54  NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP------- 106

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK- 147
             +N +    E++ +             D  +      +V  + L    K +  +TG++ 
Sbjct: 107 --INPMYKSFELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVER 149

Query: 148 -------PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 200
                    S  E +  G  +   +      ++  I YT GT+G PKGV+LTH  +A   
Sbjct: 150 VFVVGGEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANA 209

Query: 201 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDL 259
             + +        ++  D  +  +P+ H  +  +       G   V     +   L +++
Sbjct: 210 LQLAVATG-----LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENI 264

Query: 260 MELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL 319
            + K T    VP                  P      + L                    
Sbjct: 265 EKYKGTFSWAVP------------------P----ALNVLVNTL-------------ESS 289

Query: 320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETC 372
                +          L++  +G  P++  + E  L++             Q +G+TE C
Sbjct: 290 NKTYDWS--------YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341

Query: 373 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGY 430
              T   P  +    T G      EL++  +  E G    + +   GE+ +RG  +F GY
Sbjct: 342 PMVTTNPPLRLDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGY 397

Query: 431 YKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 473
           +K     +E          +F TGD+G I   G +   DR K +IK  
Sbjct: 398 WKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  205 bits (523), Expect = 9e-59
 Identities = 111/485 (22%), Positives = 175/485 (36%), Gaps = 86/485 (17%)

Query: 2   SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN 61
            +++Y     +    F +   G     +Y E  E+   +  AL+  G     R+ +   N
Sbjct: 32  YMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKALQNYGLVVDGRIALCSEN 86

Query: 62  CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD---KKVKELLSPDC 118
           C ++   + A   + +   P  +      +   L  ++   VF       KV  +     
Sbjct: 87  CEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV----Q 142

Query: 119 RSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI--LPPQPFN---- 172
           ++   ++ +V   S    +              D F+        +         +    
Sbjct: 143 KTVTTIKTIVILDSKVDYRG---------YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQ 193

Query: 173 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 232
           +  IM +SG++G PKGV LTHE I T  S     +  + ++++     L+ +P  H    
Sbjct: 194 VALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPGTAVLTVVPFHHGFGM 251

Query: 233 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 291
                +   G  V      D       L + K T +  VP                    
Sbjct: 252 FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP------------------T- 292

Query: 292 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV- 350
              +F  L K +L        +       DL             L  + SGGAPLS EV 
Sbjct: 293 ---LFAILNKSELL------NKY------DL-----------SNLVEIASGGAPLSKEVG 326

Query: 351 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYS 409
           E   R      + QGYGLTET     +  P+     G +G V    + ++  +  +    
Sbjct: 327 EAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVVPLFKAKV--IDLDTK-K 382

Query: 410 PLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 466
            L   P   GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR 
Sbjct: 383 SL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRL 440

Query: 467 KNLIK 471
           K+LIK
Sbjct: 441 KSLIK 445

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  202 bits (516), Expect = 5e-58
 Identities = 96/463 (20%), Positives = 161/463 (34%), Gaps = 84/463 (18%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+ E   +  SALR  G  P  R+ +   +      A        ++ V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
               ++L H+    V      + + ++    SA+     +  +     +  +A       
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
             ++E +        +       +I   +Y+SG++G PKG V TH   A      +L+  
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 265
                +  +DV  S   L           F    GA+          +A+   L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276

Query: 266 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 325
           +  GVP                           LY                     +L  
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291

Query: 326 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 384
             + AR    +R+  S G  L  E+ E F     C  ++ G G TE      +       
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349

Query: 385 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 436
             GT G PV  Y E+ L       VP  E+G          ++ ++G +    Y+ N + 
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREK 398

Query: 437 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
           +R + +  W  +GD    LPNG      R  +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  203 bits (519), Expect = 9e-58
 Identities = 89/517 (17%), Positives = 162/517 (31%), Gaps = 128/517 (24%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+E+ +    +  +LR  G +PG    +   N  +      A   L +  V        
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 145
               F    +E++  +    +   L++    +       +   +   E    + + +   
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159

Query: 146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 203
              ++  + ++     +    P     +     + GT+G PK +  TH         S  
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 204 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 253
                    + T    YL  +P AH         +          F  G +V     D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262

Query: 254 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 309
           A       L    +  + A VP                                  W+  
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291

Query: 310 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 368
             +    + LA               L+L+  GGA LS  +         C  L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336

Query: 369 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 420
            E     T        ++ T G P+    E+ +       +P  E+G           + 
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLM 386

Query: 421 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
            RG   F GYYK+P     +   +G++ +GD+  I P G + +  R+K+ I    GE +A
Sbjct: 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIA 445

Query: 480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCE 515
            E +EN+    P +               A+V +  E
Sbjct: 446 AEEIENLLLRHPAVIY------------AALVSMEDE 470

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  201 bits (514), Expect = 2e-57
 Identities = 111/471 (23%), Positives = 170/471 (36%), Gaps = 83/471 (17%)

Query: 16  PFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNAL 75
            F D      +  TY E +E  +++  A++  G     R+ +   N  Q+   +     +
Sbjct: 41  AFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98

Query: 76  SLICVPLYDTLGPGAVNFILDHAEIDFVFVQD---KKVKELLSPDCRSAQRLRVMVCFTS 132
            +   P  D      +   ++ ++   VFV     +K+  +     +    ++ ++   S
Sbjct: 99  GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ----KKLPIIQKIIIMDS 154

Query: 133 LTAEQKEMAVQTGIKPYSWDEFL--HLGKVNEMEILPPQPFN----ICTIMYTSGTSGDP 186
            T  Q            S   F+  HL          P+ F+    I  IM +SG++G P
Sbjct: 155 KTDYQG---------FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLP 205

Query: 187 KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG 246
           KGV L H T     S     +  F +++  D   LS +P  H         +   G  V 
Sbjct: 206 KGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVV 263

Query: 247 YYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 305
             +  +       L + K      VP                       +F    K  L 
Sbjct: 264 LMYRFEEELFLRSLQDYKIQSALLVP------------------T----LFSFFAKSTLI 301

Query: 306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQ 364
                  +       DL             L  + SGGAPLS EV E   +      + Q
Sbjct: 302 ------DKY------DL-----------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ 338

Query: 365 GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCV 421
           GYGLTET     +  P+     G  G V  + E ++  V  + G   L       GE+CV
Sbjct: 339 GYGLTETT-SAILITPEGDDKPGAVGKVVPFFEAKV--VDLDTG-KTL--GVNQRGELCV 392

Query: 422 RGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 471
           RG  + SGY  NP+ T   I  DGW H+GDI     +    I+DR K+LIK
Sbjct: 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK 443

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  197 bits (502), Expect = 7e-56
 Identities = 110/466 (23%), Positives = 182/466 (39%), Gaps = 79/466 (16%)

Query: 17  FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 76
            ++G  G     TY +V     ++ S L   G + G  + ++  + P++V A    +   
Sbjct: 41  LINGANGDVY--TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRG 98

Query: 77  LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE 136
            I         P  +      +    +  Q    +++   D      ++V +C  S    
Sbjct: 99  AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVK--DFARESDVKV-MCVDSAPDG 155

Query: 137 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 196
                         + E     + NE   +   P ++  + Y+SGT+G PKGV+LTH+ +
Sbjct: 156 CL-----------HFSELTQADE-NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGL 203

Query: 197 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNA 254
            T V+      +        +DV L  LP+ HI  L+ ++          +     ++ +
Sbjct: 204 ITSVAQQVDGDNP-NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGS 262

Query: 255 LRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 314
           L   + + K ++   VP                  P    +  ++ K             
Sbjct: 263 LLGLIEKYKVSIAPVVP------------------P----VMMSIAK------------- 287

Query: 315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCG 373
             SP  D       K  L   LR++ SGGAPL  E+ +        A L QGYG+TE   
Sbjct: 288 --SPDLD-------KHDLS-SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGP 337

Query: 374 PTTVCF----PDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTL 426
              +C            G  G V   +E+++  V PE G + L  P    GE+C+RG  +
Sbjct: 338 VLAMCLAFAKEPFDIKPGACGTVVRNAEMKI--VDPETG-ASL--PRNQPGEICIRGDQI 392

Query: 427 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 471
             GY  +P+ T  +I  +GW HTGDIG I  +  + I+DR K LIK
Sbjct: 393 MKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIK 438

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  190 bits (486), Expect = 1e-53
 Identities = 75/517 (14%), Positives = 155/517 (29%), Gaps = 128/517 (24%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y E+      + + L   G   G    +   N  ++     A     ++ +        
Sbjct: 57  SYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLN------- 109

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGI 146
               +     E++  F++  + K L+             +        + +  + +    
Sbjct: 110 --ALYSHRQYELNA-FIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA 166

Query: 147 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVD 204
             +   +++       ++        +     + G++G PK +  TH         S   
Sbjct: 167 TDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI 226

Query: 205 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLNA 254
                    +  +   L  LP  H         F             G  V     +   
Sbjct: 227 C-------GLNSNTRLLCALPAPHN--------FMLSSPGALGVLHAGGCV-VMAPNPEP 270

Query: 255 LRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 310
              +   +    +  + + VP                                + W+   
Sbjct: 271 --LNCFSIIQRHQVNMASLVPSAV-----------------------------IMWLE-- 297

Query: 311 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLT 369
              +    +  L              +L+  GGA     +  +   V  C  L Q +G+ 
Sbjct: 298 KAAQYKDQIQSL--------------KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMA 342

Query: 370 ETCGPTTVCFPDEM-CMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 420
           E          D    +  T G P+S   E+++      EVP  E+          G + 
Sbjct: 343 EGL-VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI----------GMLA 391

Query: 421 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 479
            RG   F GYY++P+   +    D ++++GD+ Q  P+G ++++ R K+ I    GE +A
Sbjct: 392 TRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIA 450

Query: 480 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCE 515
            E +E +  + P +               A+V +  E
Sbjct: 451 SEEIEKLILLHPEVMH------------AALVAIVDE 475

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  191 bits (488), Expect = 5e-52
 Identities = 112/474 (23%), Positives = 179/474 (37%), Gaps = 87/474 (18%)

Query: 17  FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 76
            ++G  G     TY +V+    QI +     G      V +   NCP++V +  A +   
Sbjct: 80  LINGPTGHVY--TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRG 137

Query: 77  LICVPLYDTLGPGAVNFILDHAEIDFVFVQD---KKVKELLSPDCRSAQRLRVMVCFTSL 133
                      P  +      +    +  +     K+K L     ++   + ++    + 
Sbjct: 138 ATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPL-----QNDDGVVIVCIDDNE 192

Query: 134 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVV 190
           +    E  +        + E          E++     +   +  + Y+SGT+G PKGV+
Sbjct: 193 SVPIPEGCL-------RFTELTQSTT-EASEVIDSVEISPDDVVALPYSSGTTGLPKGVM 244

Query: 191 LTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFLPLAHI--LDRVIEEYFFRRGASVG 246
           LTH+ +   V+ V   +D     +    DDV L  LP+ HI  L+ ++        A + 
Sbjct: 245 LTHKGL---VTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301

Query: 247 YYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 306
               ++N L + +   K T+   VP                  P    I  A+ K     
Sbjct: 302 MPKFEINLLLELIQRCKVTVAPMVP------------------P----IVLAIAK----- 334

Query: 307 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQG 365
                     S   +       K  L   +R+V SG APL  E+ +        A L QG
Sbjct: 335 ----------SSETE-------KYDLS-SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQG 376

Query: 366 YGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPP--CGE 418
           YG+TE      +             G  G V   +E+++  V P+ G   L       GE
Sbjct: 377 YGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKI--VDPDTG-DSL--SRNQPGE 431

Query: 419 VCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 471
           +C+RG  +  GY  NP  T E+I  DGW HTGDIG I  +  + I+DR K LIK
Sbjct: 432 ICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIK 485

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  185 bits (471), Expect = 1e-51
 Identities = 101/513 (19%), Positives = 173/513 (33%), Gaps = 124/513 (24%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+E+     ++ +  +  G +   RV +   N  ++ E + A   L  + V        
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVF------- 104

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
                    +EI + F +  +    + PD  S    R +     + ++     ++  I  
Sbjct: 105 --ALPSHRSSEITY-FCEFAEAAAYIIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVA 157

Query: 149 YSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVD 204
              +EFL L  ++   +++   +  ++  +  + G++G  K +  TH+        S   
Sbjct: 158 GEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV 217

Query: 205 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR-------- 256
                    +    VYL+ LP+AH         +     S     G L  L         
Sbjct: 218 C-------WLDHSTVYLAALPMAHN--------Y---PLSSP---GVLGVLYAGGRVVLS 256

Query: 257 -----DDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 307
                DD   L    K T+ A VP +                              + WM
Sbjct: 257 PSPSPDDAFPLIEREKVTITALVPPLA-----------------------------MVWM 287

Query: 308 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGY 366
           +          L+ L        ++         GGA  S E       V  C  L Q +
Sbjct: 288 D--AASSRRDDLSSL--------QVL------QVGGAKFSAEAARRVKAVFGCT-LQQVF 330

Query: 367 GLTETCGPTTVCFPDEM-CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 424
           G+ E          D    +V T G P+S Y E R+    +     +     G +  RG 
Sbjct: 331 GMAEGL-VNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RDVKPGETGHLLTRGP 386

Query: 425 TLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 483
               GYYK  +    S   DG++ TGDI ++  +G + +  R K+ I    GE VA E +
Sbjct: 387 YTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEV 445

Query: 484 ENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCE 515
           EN     P + D             A+V +P +
Sbjct: 446 ENHLLAHPAVHD------------AAMVSMPDQ 466

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  169 bits (430), Expect = 9e-46
 Identities = 123/499 (24%), Positives = 181/499 (36%), Gaps = 123/499 (24%)

Query: 23  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 82
           G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +    
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 83  YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 139
              L P  + +IL+HAE   +   D  +  L+       + ++  V       E     E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161

Query: 140 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 196
            A+     P    E                    C + YT+GT+G PKGVV +H  +   
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204

Query: 197 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 246
           +   S VD         ++  DV L  +P+ H+          L           GA   
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248

Query: 247 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 302
                L+     L+EL      T  AGVP V                             
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277

Query: 303 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLR--VTCC 359
              W+ +                     RL   LR ++ GG+     +   F R  V   
Sbjct: 278 ---WLAL------------ADYLESTGHRLKT-LRRLVVGGSAAPRSLIARFERMGVE-- 319

Query: 360 AFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGYS 409
             + QGYGLTET       F           +++ +    G       LR+ +  E    
Sbjct: 320 --VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPV 376

Query: 410 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 468
           P D    GEV ++G  +  GYY N + TR ++  DG+F TGDI      G V+I DR K+
Sbjct: 377 PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKD 436

Query: 469 LIKISQGEYVA-LEYLENV 486
           LIK S GE+++ ++ LEN 
Sbjct: 437 LIK-SGGEWISSVD-LENA 453

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  120 bits (302), Expect = 9e-29
 Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 93/442 (21%)

Query: 29  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
            ++E+ E   Q  + L  + G + G RV +     P+W   +  C    LI +P    + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 88  PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 145
              + + L  ++   +   D+ ++E+  ++ +C S   LR+ +  +  + +         
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182

Query: 146 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 203
                W  F  L          +         I +TSGTSG PK    ++ ++       
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238

Query: 204 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 257
             +       +   D+  +        +IL  ++E +    GA    +     D   +  
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291

Query: 258 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317
            L       + G P V+              R L +     L  YK              
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321

Query: 318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 376
                             L+  ++ G  L  E  E +   T    + + YG TET G T 
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363

Query: 377 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 430
           +         G  G   S Y    ++ + + G + L     G++ +R K      +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 431 YKNPDLTRESIIDGWFHTGDIG 452
             NPD T  +I   ++  GD G
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRG 441

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  116 bits (293), Expect = 5e-28
 Identities = 85/512 (16%), Positives = 144/512 (28%), Gaps = 139/512 (27%)

Query: 3   VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 62
            +  P +    +  +     G  +  T+ ++Y   L +   L   G+  G RV I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 63  PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 119
            ++V A         I VPL    G         +L  +    +      V ++      
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146

Query: 120 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 177
                             + +A + G  P S    + L L   N       +  +   + 
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189

Query: 178 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 236
           YTSG++  P GVV++H+ +       +  +    +     +   +S+LP  H        
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242

Query: 237 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR 293
                   V                  P +L G P V                P   L+R
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVL-------------TSPVSFLQR 270

Query: 294 --RIFDALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGA 344
             R    +       +   N  +         +L A R     + G     +  ++SG  
Sbjct: 271 PARWMHLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSE 321

Query: 345 PLSTE-VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMC 384
            +    ++ F       F         +   Y L E             P TV F  E  
Sbjct: 322 RVQAATIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESL 377

Query: 385 MVGTAGPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYK 432
             G A P +      L                +       D   GE+ V G  + +GY++
Sbjct: 378 SAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQ 436

Query: 433 NPDLTRESII------------DGWFHTGDIG 452
            PD +  +                W  TGD G
Sbjct: 437 KPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  116 bits (292), Expect = 2e-27
 Identities = 90/496 (18%), Positives = 161/496 (32%), Gaps = 126/496 (25%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y     
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101

Query: 89  GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 145
                   I+ +++   V +    +K+  + +  +  +   +     +  E  E+   + 
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158

Query: 146 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 205
            +P                    +  +I  + YTSG++  PKGV+++H  +   ++ +  
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201

Query: 206 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 265
                   M  + +  S+LP  H +           G            ++  +M     
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241

Query: 266 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 322
                P  F +             PL       + KYK  ++   N  Y         D 
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273

Query: 323 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 368
              R  + +  G          +G  P+  E +E F +    AF   G         YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329

Query: 369 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 405
            E               T+    E             S    + V             P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389

Query: 406 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTGDIGQILP 456
               P D    GE+ V+  ++  GY+  P+ TR +             +  TGD+G  L 
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLH 447

Query: 457 NGVVKIIDRKKNLIKI 472
              + +  R K+LI I
Sbjct: 448 ENELYVTGRIKDLIII 463

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.1 bits (194), Expect = 2e-15
 Identities = 92/586 (15%), Positives = 162/586 (27%), Gaps = 167/586 (28%)

Query: 140 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 194
           M  +TG   Y + + L    V E   +    F+   +        D PK ++   E    
Sbjct: 7   MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54

Query: 195 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 247
                 VSG          K    ++   F+          ++  +  E    R  S+  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109

Query: 248 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 290
             Y    + L +D           V R+ +   + +++AL ELRP               
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164

Query: 291 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 344
                            +K+ W+N+       + L  L      +       R   S   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223

Query: 345 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 388
            L    ++  LR            LV    L           F +  C  ++ T      
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278

Query: 389 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRESIIDGW 445
                +  + + L+       +P       E     K+L   Y   +  DL RE +    
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 446 FHTGDIGQILPNGVVKI-------IDRKKNLIKIS---------QGEYVALEYL-ENVYC 488
                I + + +G+           D+   +I+ S         +  +  L     + + 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 489 VAPIIEDIWVYGDSLKSMLVAVVVP----CEEDTKKWAYS-------------------- 524
              ++  IW        M+V   +      E+  K+   S                    
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 525 ------NGHAGSFLELCSLVQLQNYILS----ELKNAAERNKLRGFEHIKGVILDPRPFD 574
                 N       +      L  Y  S     LKN     ++  F  +    LD R F 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---FLDFR-F- 502

Query: 575 MERDL------------VTATLKKKRNKLLIY--YQVEIDQLYEKL 606
           +E+ +            +  TL     +L  Y  Y  + D  YE+L
Sbjct: 503 LEQKIRHDSTAWNASGSILNTL----QQLKFYKPYICDNDPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 83/559 (14%), Positives = 154/559 (27%), Gaps = 195/559 (34%)

Query: 92  NFILDHAEIDFVFVQD--------KKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAV 142
            F+ +    D   VQD        +++  ++ S D   +  LR+     S   E  +  V
Sbjct: 28  AFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 143 QTGIKP-YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 201
           +  ++  Y +     L  ++ ++    QP ++ T MY                       
Sbjct: 84  EEVLRINYKF-----L--MSPIKTEQRQP-SMMTRMYIE--------------------- 114

Query: 202 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 261
                     D++  D+             +V  +Y   R             LR  L+E
Sbjct: 115 --------QRDRLYNDN-------------QVFAKYNVSRLQPY-------LKLRQALLE 146

Query: 262 LKPTLLAGVPRVFEKIH--EGIKK---ALEELR--PLRRRIFDALYKYKLAWMNMGYKQR 314
           L+P        V   I    G  K   AL+      ++ ++   ++     W+N+     
Sbjct: 147 LRPA-----KNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-----WLNLKNCNS 194

Query: 315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCC------AFLVQGYG 367
             + L  L      +       R   S    L    ++  LR            LV    
Sbjct: 195 PETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---- 249

Query: 368 LTETCGPTTV-CFPDEMC--MVGT-------AGPVSVYSELRLEEVPEMGYSPLDDPPCG 417
           L           F +  C  ++ T           +  + + L+       +P       
Sbjct: 250 LLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTP------D 301

Query: 418 EVCVRGKTLFSGY--YKNPDLTRESIIDGWFHTGDIGQILPNGVVKI-------IDRKKN 468
           E     K+L   Y   +  DL RE +         I + + +G+           D+   
Sbjct: 302 E----VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 469 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV-PCEEDTKKWAYSNGH 527
           +I+ S      L  LE      P            + M   + V P              
Sbjct: 358 IIESS------LNVLE------P---------AEYRKMFDRLSVFP--PSAH-------- 386

Query: 528 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKK 587
                     +     +LS +     ++             D     +   L   +L +K
Sbjct: 387 ----------IPTI--LLSLIWFDVIKS-------------DVM--VVVNKLHKYSLVEK 419

Query: 588 RNKLLIYYQVEIDQLYEKL 606
           + K        I  +Y +L
Sbjct: 420 QPKESTIS---IPSIYLEL 435

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 50/383 (13%), Positives = 104/383 (27%), Gaps = 135/383 (35%)

Query: 22  FGPYVWKTYKEVY--EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS-LI 78
           F  + W   K     E VL+++  L             + +N    + +++    L  L+
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLL 238

Query: 79  CVPLY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC--FTSLT- 134
               Y + L       +L +       VQ+ K     +  C      ++++   F  +T 
Sbjct: 239 KSKPYENCL------LVLLN-------VQNAKAWNAFNLSC------KILLTTRFKQVTD 279

Query: 135 ----AEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEI--LPPQ-----PF----------- 171
               A    +++       + DE   L  K  +     LP +     P            
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 172 NICTIMYTSGTSGD----------------------------PKGVVLTHETIATF---- 199
            + T       + D                            P    +    ++      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 200 -VSGVDLFLDQFEDK-----------MTVDDVYLSFLPLA------HILDRVIEEYFFRR 241
             S V + +++               +++  +YL            H    +++ Y   +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPK 457

Query: 242 GASVGYYHGDLNALRDD----------LMELKPT-LLAGVPRVF-------EKI-HEG-- 280
                +   DL     D          L  ++    +     VF       +KI H+   
Sbjct: 458 ----TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 281 ------IKKALEELRPLRRRIFD 297
                 I   L++L+  +  I D
Sbjct: 514 WNASGSILNTLQQLKFYKPYICD 536

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 74.8 bits (183), Expect = 1e-14
 Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)

Query: 101 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 154
           D+    D  +K     D  +  +  +   F+  T       M  Q    P     + ++ 
Sbjct: 6   DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65

Query: 155 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 205
                  + +   P            +   +  + GT+G PK VV     I   +S    
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 206 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 264
                          L+ +P   HI+  + +E   R G        D    R     L  
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180

Query: 265 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 322
              A V +    + + ++  L       R +                     +P  L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219

Query: 323 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 380
           L   +V  ++   L  +  GG  L+ +  +F+   +         YG T   G +     
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279

Query: 381 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 436
                       S +    +  V        ++    G V V   +    +    +    
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336

Query: 437 TRESIIDGWFHTG 449
            R   + G+    
Sbjct: 337 IRLPGVSGFAGDR 349

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 29/177 (16%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+K++     +  +     G   G  V +   +   +   M   + L  I VP    L  
Sbjct: 88  TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147

Query: 89  GAVNFILDHAEIDFVFVQD-----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 143
             + + ++ A +  +         ++V E    +C      +  V               
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKV--------------- 191

Query: 144 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 193
            G     W +F    +     I       + T       + ++SGT+G PK V   +
Sbjct: 192 GGDVLEGWIDFRKELE-ESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 335 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 390
            L+  +  G PL+ EV   FL  T    L++G+G TET          FP      G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396

Query: 391 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 444
            P   Y   ++E +   G    +    GE+ +         LF  Y K+P+ T E+  DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452

Query: 445 WFHTGDIG 452
           ++HTGD+ 
Sbjct: 453 YYHTGDMA 460

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 63.3 bits (155), Expect = 1e-10
 Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 106/326 (32%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           I++TSGT+G PKGV ++H+ + +F +     ++     +      L+  P +   D    
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200

Query: 236 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 290
                   SV              M   PTL  G     +P+             E +  
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226

Query: 291 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 349
            ++ +F  + +  +            S     +            L      G  L+   
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280

Query: 350 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 409
             +       A ++  YG TE     TV              +S   E+  E V      
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322

Query: 410 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF---- 446
           P            +D+          GE+ V G  +  GY  NP+ T E+          
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382

Query: 447 HTGDIGQILPNGV----------VKI 462
           HTGDIG +  + +          +K 
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKY 408

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 87/485 (17%), Positives = 158/485 (32%), Gaps = 150/485 (30%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 82
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +        +       +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544

Query: 83  YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 141
            D   P   ++++L  +    +    +++KE  +    +   L +               
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587

Query: 142 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 201
                              +    + P   +   IMYTSGT+G PKG + TH  I   V 
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637

Query: 202 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 255
            VD          +  D +LS    A   D    +++      A +     +   D   L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

Query: 256 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 315
            D +++    ++     +F  + +      + ++ LR                       
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724

Query: 316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 374
                                  ++ GG   S   V + LR+     L+  YG TE    
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757

Query: 375 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 415
            TV               + +    + ++P+   S              L++     P  
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801

Query: 416 -CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKK 467
             GE+C+ G  +  GY    DLT+E  I+  F        TGD+ + LP+G ++   R  
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861

Query: 468 NLIKI 472
           + +KI
Sbjct: 862 DQVKI 866

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 58/322 (18%), Positives = 95/322 (29%), Gaps = 104/322 (32%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 232
           ++YTSG++G PKGV ++   +++F       +     K   +     +L     A   D 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237

Query: 233 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 288
            I E F  +R G     G     L+ L     EL  T    VP + ++         E+ 
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293

Query: 289 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
             L                                               +  GG  ++ 
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308

Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
             ++    +    LV  YG TE     T+               S    L   +   +G 
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350

Query: 409 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGD 450
            P        L             GE+ + G  + +GY   PD      I+G   + TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410

Query: 451 IGQILPNGV----------VKI 462
           I ++  +            VK+
Sbjct: 411 IVRMDADSSILFLGRKDEQVKV 432

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           I+YTSG++G+PKGV ++   + +F   +      F   ++   ++L+  P +   D    
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196

Query: 236 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 295
                   SV              M+L P L +G         + + K         + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226

Query: 296 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 354
           F+ L K  L            S +   L        L       +  G  L     +  L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281

Query: 355 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 410
                A +   YG TE     TV              V+   E+  + +      P    
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323

Query: 411 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 439
                   +D+     P    GE+ + G ++  GY   P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 57/322 (17%), Positives = 87/322 (27%), Gaps = 101/322 (31%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           I ++SGT+G PK +  TH  I        L L Q          +L   PL+   D    
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220

Query: 236 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 290
           E +     G           D   LR  + E           +F  + +      + L  
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277

Query: 291 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 348
           LR+ +   D L                      +   R+   R                 
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304

Query: 349 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 398
                        LV GYG TE    T      +  +     P+       +V       
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351

Query: 399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGD 450
           +   + E   +       GE+   G  L  GY  +   TR S ++  +         TGD
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402

Query: 451 IGQILPNGV----------VKI 462
             +    G           VK+
Sbjct: 403 RARYDEQGRLRFIGRGDGQVKL 424

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 51.3 bits (124), Expect = 6e-07
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           I+YTSG++G+PKGV +T+  + +F        + F   +    V+L+  P +   D    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197

Query: 236 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 295
                   SV              M++ P+L+ G         + I +         + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227

Query: 296 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 354
           F +L +  +            S     L        +   ++  +  G  L  E   + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282

Query: 355 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 410
                A ++  YG TE     TV              V+    +  E + +    P    
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324

Query: 411 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 439
                   + +     P    GE+ + G ++  GY  +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 60/330 (18%), Positives = 103/330 (31%), Gaps = 124/330 (37%)

Query: 176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 235
           ++YTSGT+G+PKG +L H+ I+        F +     +T  D    F  ++   D  + 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239

Query: 236 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 289
           E F     GAS+         D       + + + T++   P     +        E + 
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293

Query: 290 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 349
            ++                                              +I+ G+  S  
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308

Query: 350 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 408
            V ++         +  YG TE    TT+C              + +      +      
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345

Query: 409 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-- 447
            P            +D+          GE+C+ G+ L  GY+K P+LT +  +D  F   
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405

Query: 448 -----TGDIGQILPNGV----------VKI 462
                TGD  + L +G           VKI
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKI 435

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 72
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	611
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.33
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.16
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.87
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.76
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.72
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.34
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	93.08
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.07
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	89.9
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	88.51
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	84.76
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	84.63
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	83.24
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	81.64

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.7e-76  Score=640.03  Aligned_cols=494  Identities=19%  Similarity=0.179  Sum_probs=402.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        34 ~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp  104 (539)
T 1mdb_A           34 RAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVF  104 (539)
T ss_dssp             HHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEec
Confidence            46789999999976   3      79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH----HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  157 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (611)
                      ++|.++.+++.++++.++++++|+++....    ..........+..+.++..++..               .+.++...
T Consensus       105 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  169 (539)
T 1mdb_A          105 ALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---------------EFLPLEDL  169 (539)
T ss_dssp             CCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---------------TSEEGGGC
T ss_pred             CCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc---------------chhhhhhc
Confidence            999999999999999999999999875321    11111111223344444433211               01111111


Q ss_pred             ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--H
Q 007257          158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--E  235 (611)
Q Consensus       158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--~  235 (611)
                      . ..........++++++++|||||||.||||+++|+++.+.+......+     ++..+|++++.+|++|.+++..  +
T Consensus       170 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~  243 (539)
T 1mdb_A          170 H-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAHNYPLSSPGV  243 (539)
T ss_dssp             C-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred             c-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccccchhhHHHH
Confidence            1 111122345789999999999999999999999999998887776666     7889999999999999999875  6


Q ss_pred             HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257          236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  314 (611)
Q Consensus       236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (611)
                      +.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.....                              
T Consensus       244 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------  293 (539)
T 1mdb_A          244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------------  293 (539)
T ss_dssp             HHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC------------------------------
T ss_pred             HHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc------------------------------
Confidence            778999999999876 9999999999999999999999999887632211                              


Q ss_pred             CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCcc
Q 007257          315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  394 (611)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~  394 (611)
                                     ...+++||.+++||+++++++.+++.+.+|+++++.||+||++..+...........+++|+|++
T Consensus       294 ---------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~  358 (539)
T 1mdb_A          294 ---------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMS  358 (539)
T ss_dssp             ---------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESS
T ss_pred             ---------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccC
Confidence                           01235899999999999999999999989999999999999653332211111223478999997


Q ss_pred             C-eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257          395 Y-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  472 (611)
Q Consensus       395 ~-~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~  472 (611)
                      + .+++|+| +++  .+++.|+.|||+|+||+++.||+++++.|.+.| .+|||+|||+|++|+||++++.||.||+||+
T Consensus       359 ~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~  435 (539)
T 1mdb_A          359 PYDESRVWD-DHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR  435 (539)
T ss_dssp             TTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEEC
T ss_pred             CCceEEEEC-CCC--CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEE
Confidence            5 5899998 554  567788999999999999999999999999999 6999999999999999999999999999996


Q ss_pred             CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257          473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  549 (611)
Q Consensus       473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  549 (611)
                       +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++.         .        +        .++|+
T Consensus       436 -~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~--------~--------~~~l~  489 (539)
T 1mdb_A          436 -GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------P--------K--------AAELK  489 (539)
T ss_dssp             -SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------C--------C--------HHHHH
T ss_pred             -CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------C--------C--------HHHHH
Confidence             9999999999999999999999999997654   4789999877421         0        1        13445


Q ss_pred             HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 007257          550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  605 (611)
Q Consensus       550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~  605 (611)
                      +++++..||.|++|+.|+++++.      |+|++||++|++|+++|+++|+++|++
T Consensus       490 ~~l~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~i~~~y~~  539 (539)
T 1mdb_A          490 AFLRERGLAAYKIPDRVEFVESF------PQTGVGKVSKKALREAISEKLLAGFKK  539 (539)
T ss_dssp             HHHHHTTCCGGGSCSEEEECSSC------CBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred             HHHHhCCCCcccCCCEEEEeccC------CCCCCcCEeHHHHHHHHHHHHhccccC
Confidence            55554459999999999998765      999999999999999999999999974

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1e-74  Score=630.12  Aligned_cols=497  Identities=16%  Similarity=0.145  Sum_probs=390.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   ++ .+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        65 ~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vp  140 (580)
T 3etc_A           65 YARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVP  140 (580)
T ss_dssp             HHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEE
T ss_pred             HHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEe
Confidence            57889999999987   43 355689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhH--HHHhccccccccCc-cEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG  158 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (611)
                      +++.++.+++.+++++++++++|++.+..  ..+.... ...+.. ..++.++...          ...+..+.+.....
T Consensus       141 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  209 (580)
T 3etc_A          141 ATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------LEGWIDFRKELEES  209 (580)
T ss_dssp             CCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------CTTCEEHHHHHHHS
T ss_pred             CCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------ccccccHHHHHhhC
Confidence            99999999999999999999999987643  2222111 112222 3444444321          12355666665443


Q ss_pred             cccCCcC---CCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-
Q 007257          159 KVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-  234 (611)
Q Consensus       159 ~~~~~~~---~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-  234 (611)
                      .......   ....++++++++|||||||.||+|.++|.++...+......+     ++..++++++..|++|..+... 
T Consensus       210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  284 (580)
T 3etc_A          210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTVADSGWGKCVWGK  284 (580)
T ss_dssp             CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEECCCTTSTHHHHHT
T ss_pred             CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEeCChHHHHHHHHH
Confidence            2221111   246789999999999999999999999999887776544444     7888999999999999888775 


Q ss_pred             HHHHhhcCceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC
Q 007257          235 EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  311 (611)
Q Consensus       235 ~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (611)
                      ++.++..|+++++.+.   ++..+++.++++++|+++++|+++..|.+..                              
T Consensus       285 ~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------------  334 (580)
T 3etc_A          285 LYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------------  334 (580)
T ss_dssp             THHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------------------
T ss_pred             HHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------------------
Confidence            5667889999988742   8999999999999999999999998876410                              


Q ss_pred             CCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCC
Q 007257          312 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  391 (611)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~  391 (611)
                                      .....+++||.+++||+++++++.++|.+.+|+++++.||+||++..++..... ....+++|+
T Consensus       335 ----------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~  397 (580)
T 3etc_A          335 ----------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-EPKPGSIGK  397 (580)
T ss_dssp             ----------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-CCCTTCCBE
T ss_pred             ----------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCC-CCCCCcccc
Confidence                            011123589999999999999999999998999999999999998776655433 344589999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEec-----CCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEecc
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      |+++++++|+| +++  .+++.|+.|||+|+|     +.++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.
T Consensus       398 p~~~~~v~ivd-~~g--~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~  474 (580)
T 3etc_A          398 PTPGYKIELMD-RDG--RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRA  474 (580)
T ss_dssp             ECTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEES
T ss_pred             CCCCCEEEEEC-CCC--CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecC
Confidence            99999999999 554  467788999999997     7899999999999999999999999999999999999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  543 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (611)
                      ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+.|+|++.++..                 ...+    
T Consensus       475 dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~-----------------~~~~----  532 (580)
T 3etc_A          475 DDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT-----------------PSDS----  532 (580)
T ss_dssp             SSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-----------------CCHH----
T ss_pred             CCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC-----------------CCHH----
Confidence            999997 8999999999999999999999999997755   47889999887531                 1122    


Q ss_pred             HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +.++|+++++ +.|+.|++|+.|+++++.      |+|++||++|++|++++++
T Consensus       533 ~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          533 LKNELQDHVK-NVTAPYKYPRIIEFVPEL------PKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             HHHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred             HHHHHHHHHH-hhCCCccCCeEEEEeCCC------CCCCCcCCcHHHHHhHhhc
Confidence            2344555554 679999999999999765      9999999999999998865

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.2e-74  Score=625.62  Aligned_cols=495  Identities=26%  Similarity=0.316  Sum_probs=405.5

Q ss_pred             CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      ++|+++||++|+++.   ++  +  +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus        30 ~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~v  102 (536)
T 3ni2_A           30 ENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIIT  102 (536)
T ss_dssp             TTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEE
T ss_pred             HHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEe
Confidence            468899999999975   21  1  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      |++|.++.+++.++++.++++++|++......+.......  .. .++.++...           .....+.++......
T Consensus       103 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~  168 (536)
T 3ni2_A          103 AANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCVDSAP-----------DGCLHFSELTQADEN  168 (536)
T ss_dssp             ECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEESSCCC-----------TTCEETHHHHTSCGG
T ss_pred             ccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEecCCC-----------CCccCHHHHhhcccc
Confidence            9999999999999999999999999987665543322111  11 344443321           124556666544322


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF  239 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l  239 (611)
                       ........++++++++|||||||.||+|+++|+++.+.+........ ....+..++++++.+|++|.+++.. ++.++
T Consensus       169 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l  246 (536)
T 3ni2_A          169 -EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-PNLYFHSEDVILCVLPMFHIYALNSIMLCGL  246 (536)
T ss_dssp             -GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-CSSCCCTTCCEEECSCTTSHHHHHHTHHHHH
T ss_pred             -ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-ccccCCCCCEEEEecChHHHHHHHHHHHHHH
Confidence             22334567899999999999999999999999999887765433211 0125778999999999999999865 56679


Q ss_pred             hcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          240 RRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       240 ~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      ..|+++++.+. ++..+++.++++++|++.++|+++..+.+..                                     
T Consensus       247 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------------  289 (536)
T 3ni2_A          247 RVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-------------------------------------  289 (536)
T ss_dssp             HHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------------------------------------
T ss_pred             hcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------------------------------------
Confidence            99999999876 9999999999999999999999998876421                                     


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccC----CCccccCccCCCc
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP----DEMCMVGTAGPVS  393 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~----~~~~~~~~~G~~~  393 (611)
                      ..+.        ..+++||.+++||+++++++.+.+.+.+ ++++++.||+||++.+++.+..    ......+++|.|+
T Consensus       290 ~~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~  361 (536)
T 3ni2_A          290 DLDK--------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVV  361 (536)
T ss_dssp             CGGG--------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEEC
T ss_pred             cccc--------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeC
Confidence            1111        1235899999999999999999999988 8999999999999987665421    1233458899999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  472 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~  472 (611)
                      ++++++|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||+
T Consensus       362 ~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~  439 (536)
T 3ni2_A          362 RNAEMKIVD-PET-GASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKY  439 (536)
T ss_dssp             SSCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEE
T ss_pred             CCcEEEEEe-CCC-CcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEE
Confidence            999999998 443 3667788999999999999999999999999999 7899999999999999999999999999998


Q ss_pred             CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257          473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  549 (611)
Q Consensus       473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  549 (611)
                       +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.++..        .        +        .++|+
T Consensus       440 -~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~--------~--------~--------~~~l~  494 (536)
T 3ni2_A          440 -KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ--------A--------T--------EDEIK  494 (536)
T ss_dssp             -TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------C--------C--------HHHHH
T ss_pred             -CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCC--------C--------C--------HHHHH
Confidence             9999999999999999999999999986544   47899998876420        0        1        12445


Q ss_pred             HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      ++++ ++||.|++|+.++++++.      |+|++||++|++|+++|++
T Consensus       495 ~~l~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          495 QYIS-KQVIFYKRIKRVFFIEAI------PKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             HHHH-TTSCGGGCCSEEEECSCC------CBCTTSCBCHHHHHTC---
T ss_pred             HHHH-HhccCCccccEEEEEecC------CCCCCCCeeHHHHHHHhcc
Confidence            5554 789999999999998765      9999999999999998754

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2.6e-75  Score=632.61  Aligned_cols=498  Identities=20%  Similarity=0.227  Sum_probs=378.3

Q ss_pred             ccccCCCCCceeeeccccC--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEE
Q 007257            2 SVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC   79 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~--~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   79 (611)
                      +|+++||++|+++.   ++  ..+..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        28 ~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~  104 (549)
T 3g7s_A           28 AAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATP  104 (549)
T ss_dssp             HHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             HHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence            57889999999987   42  23445899999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc
Q 007257           80 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  159 (611)
Q Consensus        80 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (611)
                      +|++|.++.+++.+++++++++++|++......+......  .....++..+..              ..++.++.....
T Consensus       105 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~~~~~  168 (549)
T 3g7s_A          105 VPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE--------------VNSLSEVMDSGS  168 (549)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS--------------SSCHHHHHHHSC
T ss_pred             EccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC--------------CcCHHHHHhcCc
Confidence            9999999999999999999999999998776554332221  124455554422              234555554432


Q ss_pred             ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257          160 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF  239 (611)
Q Consensus       160 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l  239 (611)
                      ..........++++++|+|||||||.||+|+++|.++.+.+......+     ++..+|++++.+|++|.+++...+.++
T Consensus       169 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~~~~~~~~~l  243 (549)
T 3g7s_A          169 EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGCMPMFHSAEFGLVNLMV  243 (549)
T ss_dssp             SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECCSCTTSHHHHHHHTTHH
T ss_pred             cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEeCcHHHHHHHHHHHHHH
Confidence            221222222348999999999999999999999999999988877766     788999999999999999988877789


Q ss_pred             hcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          240 RRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       240 ~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      ..|+++++.+. ++..+++.++++++|+++++|+++..|.+.......                                
T Consensus       244 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------------  291 (549)
T 3g7s_A          244 TVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK--------------------------------  291 (549)
T ss_dssp             HHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC--------------------------------
T ss_pred             hcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc--------------------------------
Confidence            99999999876 999999999999999999999999998764322100                                


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHH----cC---CceeeccccCCCCCceeeccCCCccccCccCC
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  391 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~  391 (611)
                                 ...++++|.+++||+++++++.+.+.+.    ++   +.+++.||+||++.+++..........+++|.
T Consensus       292 -----------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~  360 (549)
T 3g7s_A          292 -----------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGV  360 (549)
T ss_dssp             -----------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCE
T ss_pred             -----------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccc
Confidence                       0112589999999999999999999887    66   89999999999999888766555455689999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc---cCC--ccccCceEEEccCCeEEEEecc
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      |+++++++|+|. ++ ..+++.|+.|||+|+||+++.||+++++.+.+.|   .+|  ||+|||+|++|+||++++.||.
T Consensus       361 p~~~~~~~i~d~-~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~  438 (549)
T 3g7s_A          361 PMSDIELKVISL-ED-GRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRV  438 (549)
T ss_dssp             ECTTCEEEEECS-SS-CCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC
T ss_pred             cCCCCEEEEEeC-CC-CcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccc
Confidence            999999999983 33 3567788999999999999999999999999998   677  9999999999999999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  543 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (611)
                      ||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|+++++...      ..        +       
T Consensus       439 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~------~~--------~-------  496 (549)
T 3g7s_A          439 KEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG------KV--------D-------  496 (549)
T ss_dssp             -------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT------SC--------C-------
T ss_pred             cceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC------cC--------C-------
Confidence            999997 9999999999999999999999999997765   378899998764200      00        1       


Q ss_pred             HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                       .++|+++++ ++||.|++|+.|+++++.      |+|++||++|++|++++.+.
T Consensus       497 -~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          497 -EEDIIEWVR-ERISGYKRVREVEFVEEL------PRTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             -HHHHHHHHH-TTCC-----CCCCEEEEC------C-------------------
T ss_pred             -HHHHHHHHH-HhccCcccceEEEEeccC------CCCCCcCEeHHHHHHHhhcc
Confidence             134445554 789999999999999765      99999999999999988653

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=6.6e-75  Score=628.39  Aligned_cols=491  Identities=14%  Similarity=0.156  Sum_probs=324.0

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        39 ~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vp  109 (544)
T 3o83_A           39 GVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLN  109 (544)
T ss_dssp             HHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEec
Confidence            57889999999986   3      79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH----HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  157 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (611)
                      +++.++.+++.+++++++++++|++.....    ...............++..+....            ...+.++...
T Consensus       110 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  177 (544)
T 3o83_A          110 ALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------DFGLLDWIET  177 (544)
T ss_dssp             CCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------SEEHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------ccchhhhhhc
Confidence            999999999999999999999999876431    111111112234445555543311            1233444433


Q ss_pred             ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--H
Q 007257          158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--E  235 (611)
Q Consensus       158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--~  235 (611)
                      ............++++++++|||||||.||+|+++|+++.+.+......+     ++..+|++++.+|++|.+++..  .
T Consensus       178 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~  252 (544)
T 3o83_A          178 PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAPHNFMLSSPGA  252 (544)
T ss_dssp             CCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred             ccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcceEeecchHHH
Confidence            32222233456789999999999999999999999999999988877766     7889999999999999999875  6


Q ss_pred             HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257          236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  314 (611)
Q Consensus       236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (611)
                      +.++..|+++++.+. ++..+++.++++++|+++++|+++..+++........                           
T Consensus       253 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---------------------------  305 (544)
T 3o83_A          253 LGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ---------------------------  305 (544)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH---------------------------
T ss_pred             HHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc---------------------------
Confidence            667999999999877 9999999999999999999999999887643221111                           


Q ss_pred             CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc-
Q 007257          315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS-  393 (611)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~-  393 (611)
                                        +++||.+++||+++++++.+.+.+.+|+++++.||+||++..+............++|.|+ 
T Consensus       306 ------------------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~  367 (544)
T 3o83_A          306 ------------------IQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPIS  367 (544)
T ss_dssp             ------------------HTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESC
T ss_pred             ------------------CCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCceecC
Confidence                              1489999999999999999999999999999999999988555443333334457889996 


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  472 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~  472 (611)
                      ++++++|+| +++  .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||+
T Consensus       368 ~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~  444 (544)
T 3o83_A          368 SDDEIKIVD-EQY--REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINR  444 (544)
T ss_dssp             TTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----
T ss_pred             CCcEEEEEC-CCC--CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEe
Confidence            899999998 554  467788999999999999999999999999999 7999999999999999999999999999996


Q ss_pred             CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257          473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  549 (611)
Q Consensus       473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  549 (611)
                       +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.+...                 +        ...++
T Consensus       445 -~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~--------~~~l~  498 (544)
T 3o83_A          445 -GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------K--------AVVLR  498 (544)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------C--------HHHHH
Confidence             9999999999999999999999999997655   37888888765310                 1        12334


Q ss_pred             HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      +++++..||.|++|+.|+++++.      |+|++||++|++|++++++.
T Consensus       499 ~~~~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          499 RHLMELGIAQYKLPDQIKLIESL------PLTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHhCCCCcccCCcEEEEeccC------CCCCCCCCcHHHHHHHHhhc
Confidence            44443379999999999998765      99999999999999988653

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1e-74  Score=626.44  Aligned_cols=493  Identities=24%  Similarity=0.292  Sum_probs=373.8

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        27 ~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp  101 (541)
T 1v25_A           27 AAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT  101 (541)
T ss_dssp             HHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEe
Confidence            46789999999864   21  23479999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++|+.++++++|++++....+.... ...+....++.+++...          .....++++...... 
T Consensus       102 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-  169 (541)
T 1v25_A          102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAYEEALGEEAD-  169 (541)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEHHHHCCSCCC-
T ss_pred             cCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccHHHHhhccCC-
Confidence            999999999999999999999999987655443221 22344455665544321          023355555432211 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhc--ccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF  239 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l  239 (611)
                         .....++++++++|||||||.||+|++||+++.......  ...+     ++..+|++++.+|++|.+++...+.++
T Consensus       170 ---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~~~~~~~~~l  241 (541)
T 1v25_A          170 ---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVNAWCLPYAAT  241 (541)
T ss_dssp             ---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHHHHTHHHHHH
T ss_pred             ---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhhHHHHHHHHH
Confidence               134567899999999999999999999999998765542  2223     678899999999999999987777889


Q ss_pred             hcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          240 RRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       240 ~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      ..|+++++.+.  ++..+++.++++++|+++++|+++..|.+.....                                 
T Consensus       242 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------  288 (541)
T 1v25_A          242 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST---------------------------------  288 (541)
T ss_dssp             HHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH---------------------------------
T ss_pred             hcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc---------------------------------
Confidence            99999999864  8999999999999999999999999987643221                                 


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC----------ccccC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----------MCMVG  387 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~----------~~~~~  387 (611)
                                  ...+++||.+++||+++++++.+.+ +.+|+++++.||+||++.+++......          ....+
T Consensus       289 ------------~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (541)
T 1v25_A          289 ------------GHRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA  355 (541)
T ss_dssp             ------------TCCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHT
T ss_pred             ------------CCcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccC
Confidence                        0122589999999999999999999 567999999999999998877654331          12347


Q ss_pred             ccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-CCccccCceEEEccCCeEEEEecc
Q 007257          388 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       388 ~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      ++|+|+++++++|+| +++...+.+.++.|||+|+||+++.||+++++.|++.|. +|||+|||+|++|+||++++.||.
T Consensus       356 ~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~  434 (541)
T 1v25_A          356 KTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL  434 (541)
T ss_dssp             SCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEES
T ss_pred             CCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecc
Confidence            899999999999999 666544433456899999999999999999999999994 999999999999999999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  543 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (611)
                      ||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++....         .        +       
T Consensus       435 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~--------~-------  489 (541)
T 1v25_A          435 KDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P--------T-------  489 (541)
T ss_dssp             SCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------------------
T ss_pred             cceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C--------C-------
Confidence            999997 9999999999999999999999999997765   4788888876211         0        1       


Q ss_pred             HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                       .+++.+++++.+||.|++|+.++++++.      |+|++||++|++|++.|++.
T Consensus       490 -~~~l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~  537 (541)
T 1v25_A          490 -PEELNEHLLKAGFAKWQLPDAYVFAEEI------PRTSAGKFLKRALREQYKNY  537 (541)
T ss_dssp             ------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred             -HHHHHHHHHhccCccccCCcEEEEeCCC------CCCCccCeeHHHHHHHHHHh
Confidence             1233444432389999999999988665      99999999999999987654

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2.6e-74  Score=617.73  Aligned_cols=486  Identities=23%  Similarity=0.295  Sum_probs=395.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+..... ++     +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus         9 ~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp   82 (503)
T 4fuq_A            9 LFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLP   82 (503)
T ss_dssp             HHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEe
Confidence            5788999999986410 22     68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.+++++++++++|++......+....... .  ..+..+.....             ..+...... ...
T Consensus        83 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~~-~~~  145 (503)
T 4fuq_A           83 LNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAAG-ASE  145 (503)
T ss_dssp             CCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHHT-SCS
T ss_pred             cCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhhc-CCC
Confidence            999999999999999999999999986544322211110 1  12333322210             011111111 112


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHhh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFR  240 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~  240 (611)
                      ........++++++++|||||||.||+|+++|+++.+.+......+     ++..+|++++.+|++|.+++.. .+.+++
T Consensus       146 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~  220 (503)
T 4fuq_A          146 AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASNVTLF  220 (503)
T ss_dssp             CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred             CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence            2233456789999999999999999999999999999988877766     7889999999999999998765 566788


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++  ++|+++++|+++..+.+...                                     
T Consensus       221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------  261 (503)
T 4fuq_A          221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------  261 (503)
T ss_dssp             TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT-------------------------------------
T ss_pred             hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC-------------------------------------
Confidence            9999998876 9999999998  89999999999998864211                                     


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR  399 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~  399 (611)
                      ..        ...++++|.+++||+++++++.+.|.+.+|.++++.||+||++..++... ......+++|+|+++++++
T Consensus       262 ~~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~~~  332 (503)
T 4fuq_A          262 LT--------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSAR  332 (503)
T ss_dssp             CS--------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCTTCEEE
T ss_pred             cc--------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCCCeEEE
Confidence            00        01125899999999999999999999999999999999999987755333 2334458899999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCceec
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV  478 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v  478 (611)
                      |+| +++ ..+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||+ +|++|
T Consensus       333 i~d-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v  409 (503)
T 4fuq_A          333 VTD-PET-GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNV  409 (503)
T ss_dssp             EEC-TTT-CCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEE
T ss_pred             EEE-CCC-CCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEE
Confidence            998 333 3677888999999999999999999999999999 5999999999999999999999999999997 99999


Q ss_pred             CcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 007257          479 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  555 (611)
Q Consensus       479 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  555 (611)
                      +|.+||++|.+||+|.+|+|++.++.   +.++|+|+++++..        .        +.        +++.+++ ++
T Consensus       410 ~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~--------~--------~~--------~~l~~~l-~~  464 (503)
T 4fuq_A          410 YPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAT--------I--------DE--------AQVLHGL-DG  464 (503)
T ss_dssp             CHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------C--------CH--------HHHHHHH-BT
T ss_pred             CHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCC--------C--------CH--------HHHHHHH-Hh
Confidence            99999999999999999999987654   47889999876420        0        11        2344444 47


Q ss_pred             CCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          556 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       556 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +||.|++|+.|+++++.      |+|++||++|++|+++|++
T Consensus       465 ~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~  500 (503)
T 4fuq_A          465 QLAKFKMPKKVIFVDDL------PRNTMGKVQKNVLRETYKD  500 (503)
T ss_dssp             TBCGGGCCSEEEEESCC------CBCTTSCBCHHHHHHHTTT
T ss_pred             hcccCCCCCEEEEECCC------CCCcccceeHHHHHHHHHH
Confidence            89999999999999765      9999999999999998864

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=8.3e-74  Score=631.49  Aligned_cols=512  Identities=16%  Similarity=0.188  Sum_probs=410.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   ++..+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        85 ~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vp  161 (652)
T 1pg4_A           85 HLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV  161 (652)
T ss_dssp             GHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             HhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEe
Confidence            56778999999986   433455689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHH---------HHhcccccc-ccCccEEEEecCCcHHHHHHhhhCCCceeeH
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  151 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  151 (611)
                      +++.++.+++.++|++++++++|+++....         .+....... ......+++++......    .........|
T Consensus       162 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~~~~~~~~~  237 (652)
T 1pg4_A          162 IFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----DWQEGRDLWW  237 (652)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----CCCBTTEEEH
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc----cccCCCceeH
Confidence            999999999999999999999999876421         111111110 02345566655321100    0001123567


Q ss_pred             HHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhh-cccccccccCCCCCCcEEEEecchhhHH
Q 007257          152 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHIL  230 (611)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~  230 (611)
                      +++..... .........++++++|+|||||||.||||+++|.+++..+.. ....+     ++..+|++++..|++|..
T Consensus       238 ~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~~  311 (652)
T 1pg4_A          238 RDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYWCTADVGWVT  311 (652)
T ss_dssp             HHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             HHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEEEccCCeeee
Confidence            77765432 222334456899999999999999999999999998766543 33334     688999999999999999


Q ss_pred             HHHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007257          231 DRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  304 (611)
Q Consensus       231 g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (611)
                      ++.+ ++.++..|+++++++.     ++..+++.|+++++|+++++|+++..|.+....                     
T Consensus       312 g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------  370 (652)
T 1pg4_A          312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------------------  370 (652)
T ss_dssp             HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG---------------------
T ss_pred             chHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc---------------------
Confidence            9855 6778999999999863     789999999999999999999999988642110                     


Q ss_pred             HHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccCC
Q 007257          305 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFPD  381 (611)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~~  381 (611)
                                    ...        ...+++||.+++||+++++++.+++.+.+|   +++++.||+||+++.++...+.
T Consensus       371 --------------~~~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~  428 (652)
T 1pg4_A          371 --------------AIE--------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG  428 (652)
T ss_dssp             --------------GTT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT
T ss_pred             --------------ccc--------cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCC
Confidence                          000        112369999999999999999999999888   8999999999999877665443


Q ss_pred             -CccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEEEc
Q 007257          382 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQIL  455 (611)
Q Consensus       382 -~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~  455 (611)
                       .....+++|+|+++++++|+| +++  .+++.|+.|||+|+|  |+++.||+++++.+.+.|   .+|||+|||+|++|
T Consensus       429 ~~~~~~~s~G~p~~g~~v~i~d-~~g--~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d  505 (652)
T 1pg4_A          429 AIELKAGSATRPFFGVQPALVD-NEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD  505 (652)
T ss_dssp             TCCBCTTCCBSBCTTCCEEEEC-TTC--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC
T ss_pred             CcCccCCccccCcCCCeEEEEC-CCC--CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEc
Confidence             234558999999999999998 554  456677899999999  789999999999998877   38999999999999


Q ss_pred             cCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHH
Q 007257          456 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  532 (611)
Q Consensus       456 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~  532 (611)
                      +||++++.||.||+||+ +|++|+|.|||++|.+||+|.||+|++.++.   +.++|+|+++++..              
T Consensus       506 ~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~--------------  570 (652)
T 1pg4_A          506 EDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE--------------  570 (652)
T ss_dssp             TTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------------
T ss_pred             CCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC--------------
Confidence            99999999999999998 8999999999999999999999999997654   47999999886420              


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 007257          533 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  601 (611)
Q Consensus       533 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~  601 (611)
                         ...+    +.++|+++++ +.|+.|++|+.|+++++.      |+|++||++|++|++.+.++++.
T Consensus       571 ---~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~~  625 (652)
T 1pg4_A          571 ---PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGDTSN  625 (652)
T ss_dssp             ---CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC---
T ss_pred             ---CCHH----HHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCCccchHHHHHHHHhCCCCC
Confidence               1122    2345555554 679999999999998765      99999999999999999876543

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=4.8e-74  Score=617.74  Aligned_cols=486  Identities=23%  Similarity=0.309  Sum_probs=395.4

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +.    .+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        25 ~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp   97 (517)
T 3r44_A           25 RATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP   97 (517)
T ss_dssp             HHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Confidence            57889999999986   31    159999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.+++++++++++|++......+....... .....++....               ...+.+..... ..
T Consensus        98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~~~~~~~~~-~~  160 (517)
T 3r44_A           98 INTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------ADSLAERLRSA-AA  160 (517)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HHHHHHHHHHC-CC
T ss_pred             cCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cccHHHHhhcc-Cc
Confidence            999999999999999999999999987655442221111 11111111110               01222222222 12


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|+++|+++.+.+......+     ++..+|++++.+|++|.+++...+.+++.
T Consensus       161 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~~~~  235 (517)
T 3r44_A          161 DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVAALTTVIFSAMR  235 (517)
T ss_dssp             CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence            2233456789999999999999999999999999999988877766     78899999999999999999876666669


Q ss_pred             CceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                      |+++++.+. ++..+++.++++++|++.++|+++..|.+....                                     
T Consensus       236 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------------  278 (517)
T 3r44_A          236 GVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF-------------------------------------  278 (517)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-------------------------------------
T ss_pred             CeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------------------------------------
Confidence            999999877 999999999999999999999999988653211                                     


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-ccccCccCCCccCeeEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELR  399 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~~~~~~v~  399 (611)
                              ....++++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+++|+|.++++++
T Consensus       279 --------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  349 (517)
T 3r44_A          279 --------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA  349 (517)
T ss_dssp             --------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEE
T ss_pred             --------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEE
Confidence                    11223589999999999999999999887 999999999999998776654432 44558899999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecC
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  479 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~  479 (611)
                      +++ +++.  +++.+ .|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.||+||+ +|++|+
T Consensus       350 i~d-~~~~--~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~  424 (517)
T 3r44_A          350 VRG-DDGV--IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS-GGENVY  424 (517)
T ss_dssp             EEC-TTSC--EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEE-TTEEEC
T ss_pred             EEC-CCCC--CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEE-CCEEEC
Confidence            998 5543  44445 799999999999999999999999999999999999999999999999999999997 999999


Q ss_pred             cHHHHHHHhcCcCcceEEEEecCCCC---eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCC
Q 007257          480 LEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  556 (611)
Q Consensus       480 ~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  556 (611)
                      |.+||++|.+||+|.+|+|++.++..   .++|+++.....         .        +.        ++|+++++ ++
T Consensus       425 p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~--------~~--------~~l~~~l~-~~  478 (517)
T 3r44_A          425 PAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------V--------SE--------QQIVEYCG-TR  478 (517)
T ss_dssp             HHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------C--------CH--------HHHHHHHH-HH
T ss_pred             HHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------C--------CH--------HHHHHHHH-Hh
Confidence            99999999999999999999876542   566666433211         0        11        23444444 67


Q ss_pred             CCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          557 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       557 l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                      ||.|++|+.|+++++.      |+|++||++|++|+++|.+++
T Consensus       479 L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~~  515 (517)
T 3r44_A          479 LARYKLPKKVIFAEAI------PRNPTGKILKTVLREQYSATV  515 (517)
T ss_dssp             SCGGGSCSEEEECSCC------CBCTTCCBCHHHHHHHHGGGC
T ss_pred             CCCCCCCCEEEEECCC------CCCCCcCccHHHHHHHHHhhc
Confidence            9999999999998665      999999999999999987654

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.4e-73  Score=612.93  Aligned_cols=479  Identities=21%  Similarity=0.247  Sum_probs=388.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+.+.   ++.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        11 ~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp   83 (504)
T 1t5h_X           11 AATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL   83 (504)
T ss_dssp             HHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Confidence            57889999999875   211    79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEE--cchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  159 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (611)
                      ++|.++.+++.+++++++++++++  +......+....    ...+ ++.                     ++++.....
T Consensus        84 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~---------------------~~~~~~~~~  137 (504)
T 1t5h_X           84 LNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF---------------------LGDLVRDGE  137 (504)
T ss_dssp             ECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE---------------------GGGTEETTE
T ss_pred             cCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE---------------------ecchhhcCc
Confidence            999999999999999999999999  665443331111    1111 221                     111111100


Q ss_pred             ----ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCC--CCCcEEEEecchhhHHHHH
Q 007257          160 ----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRV  233 (611)
Q Consensus       160 ----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~g~~  233 (611)
                          ..........++++++++|||||||.||+|.++|+++.+.+......+     ++  ..++++++.+|++|.+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~p~~~~~g~~  212 (504)
T 1t5h_X          138 PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGLMPLYHVVGFF  212 (504)
T ss_dssp             ECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEECSCTTSHHHHT
T ss_pred             ccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEeecchhhcchHH
Confidence                111111345689999999999999999999999999998887765554     55  7889999999999999985


Q ss_pred             H-HHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcC
Q 007257          234 I-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  311 (611)
Q Consensus       234 ~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (611)
                      . .+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+......                          
T Consensus       213 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------  266 (504)
T 1t5h_X          213 AVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG--------------------------  266 (504)
T ss_dssp             TTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT--------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc--------------------------
Confidence            4 6778999999999876 99999999999999999999999998875321000                          


Q ss_pred             CCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCC
Q 007257          312 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  391 (611)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~  391 (611)
                               .        ...+++||.+++||+++++++.+.+.+.++..+++.||+||++. +....   ....+++|.
T Consensus       267 ---------~--------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~---~~~~~~~g~  325 (504)
T 1t5h_X          267 ---------S--------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR---QPKTGTEMA  325 (504)
T ss_dssp             ---------C--------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE---SCSSSSEEB
T ss_pred             ---------c--------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc---CCCCCcccc
Confidence                     0        01125899999999999999999999999999999999999932 22222   123478899


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEe-cCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeE
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  470 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i  470 (611)
                      |.+++++++++.+++...+++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.||+|
T Consensus       326 p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~i  405 (504)
T 1t5h_X          326 PGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI  405 (504)
T ss_dssp             CCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCE
T ss_pred             CCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEE
Confidence            9999999999844333467788899999999 899999999999999999999999999999999999999999999999


Q ss_pred             EcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 007257          471 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  547 (611)
Q Consensus       471 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (611)
                      |+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|+++++.        ..        +        .++
T Consensus       406 k~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~--------~--------~~~  460 (504)
T 1t5h_X          406 IS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S--------ADA  460 (504)
T ss_dssp             EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CC--------C--------HHH
T ss_pred             EE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------Cc--------C--------HHH
Confidence            97 9999999999999999999999999997765   4799999987642        00        1        134


Q ss_pred             HHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHH
Q 007257          548 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  596 (611)
Q Consensus       548 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  596 (611)
                      |.+++++++||.|++|+.|+++++.      |+|++||++|++|+++|+
T Consensus       461 l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          461 LDTFCRSSELADFKRPKRYFILDQL------PKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             HHHHHHTSSCCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHC
T ss_pred             HHHHHhhccCcccccceEEEEhhhC------CCCCCCCEeHHHHHHHhc
Confidence            5555543389999999999999765      999999999999998874

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.5e-73  Score=617.97  Aligned_cols=500  Identities=25%  Similarity=0.293  Sum_probs=402.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++ |++|+++..  ++     +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        35 ~~~~~-~~~A~~~~~--~~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vp  106 (548)
T 2d1s_A           35 RYAKL-GAIAFTNAV--TG-----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAP  106 (548)
T ss_dssp             HHHHH-TCEEEEETT--TC-----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEE
T ss_pred             hhccc-CCceEEEcC--CC-----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEec
Confidence            45678 999998741  12     68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++|+.++++++|+++.....+.... ...+....++.++....         ......|+++.......
T Consensus       107 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  176 (548)
T 2d1s_A          107 TNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVD---------YRGYQCLDTFIKRNTPP  176 (548)
T ss_dssp             ECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSC---------BTTBCBHHHHHHHTSCT
T ss_pred             cCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCccc---------ccccccHHHHHhcCccc
Confidence            999999999999999999999999987655443221 11122344555443210         00123455555432111


Q ss_pred             CCcCCCC------CCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHH
Q 007257          162 EMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE  235 (611)
Q Consensus       162 ~~~~~~~------~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~  235 (611)
                      .......      .++++++++|||||||.||+|.+||+++.+.+......+.  ..++..+|++++.+|++|.+++...
T Consensus       177 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~  254 (548)
T 2d1s_A          177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVVPFHHGFGMFTT  254 (548)
T ss_dssp             TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred             cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEeccHHHHHHHHHH
Confidence            0111111      2389999999999999999999999999988776654410  1267889999999999999998774


Q ss_pred             -HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCC
Q 007257          236 -EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  313 (611)
Q Consensus       236 -~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (611)
                       +.++ .|+++++.+. ++..+++.++++++|+++++|+++..|.+..                                
T Consensus       255 ~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------------------  301 (548)
T 2d1s_A          255 LGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE--------------------------------  301 (548)
T ss_dssp             HHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS--------------------------------
T ss_pred             HHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc--------------------------------
Confidence             4456 9999999876 9999999999999999999999999886411                                


Q ss_pred             CCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCccCCC
Q 007257          314 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV  392 (611)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~  392 (611)
                           ..+.        ..+++||.+++||+++++++.+.+.+.+ ++++++.||+||++..++..... ....+++|+|
T Consensus       302 -----~~~~--------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~  367 (548)
T 2d1s_A          302 -----LLNK--------YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-DDKPGASGKV  367 (548)
T ss_dssp             -----CGGG--------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-CCCTTCCBEE
T ss_pred             -----cccc--------ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc-cCCCCCCCcc
Confidence                 0111        1225899999999999999999999988 68899999999999877764433 2345899999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEE
Q 007257          393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK  471 (611)
Q Consensus       393 ~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~  471 (611)
                      +++++++|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+|+
T Consensus       368 ~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik  445 (548)
T 2d1s_A          368 VPLFKAKVID-LDT-KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIK  445 (548)
T ss_dssp             CTTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBC
T ss_pred             CCCceEEEEe-CCc-CccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEE
Confidence            9999999998 332 3567788999999999999999999999999999 799999999999999999999999999999


Q ss_pred             cCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257          472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  548 (611)
Q Consensus       472 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  548 (611)
                      + +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|+++++.        ..        +        .++|
T Consensus       446 ~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~--------~--------~~~l  500 (548)
T 2d1s_A          446 Y-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NM--------T--------EKEV  500 (548)
T ss_dssp             B-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C--------HHHH
T ss_pred             E-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CC--------C--------HHHH
Confidence            7 9999999999999999999999999997654   4788999987642        00        1        1234


Q ss_pred             HHHHHhCCCCCcceee-eEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 007257          549 KNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  602 (611)
Q Consensus       549 ~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~  602 (611)
                      .++++ ++|+.|++|+ .|+++++.      |+|++||++|++|+++|++.|+++
T Consensus       501 ~~~~~-~~l~~~~~p~~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~i~~~  548 (548)
T 2d1s_A          501 MDYVA-SQVSNAKRLRGGVRFVDEV------PKGLTGKIDGRAIREILKKPVAKM  548 (548)
T ss_dssp             HHHHH-TTSCGGGSCTTCEEECSSC------CBCTTSCBCHHHHHHHHHSCC---
T ss_pred             HHHHH-HhccccccccccEEEccCC------CCCCcchhHHHHHHHHHhhhhhcC
Confidence            45554 7899999999 89998665      999999999999999998887764

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=9.2e-73  Score=613.89  Aligned_cols=496  Identities=19%  Similarity=0.202  Sum_probs=404.8

Q ss_pred             cccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            3 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         3 a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      |+++||++|+++.   ++ .+..+++||+||.++++++|++|.+. |+++||+|+++++|++++++++|||+++|++++|
T Consensus        53 a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vp  128 (570)
T 3c5e_A           53 AGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP  128 (570)
T ss_dssp             TTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEE
T ss_pred             ccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence            4459999999986   32 23458999999999999999999999 9999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      +++.++.+++.++++.++++++|+++.....+.... ...+.++.++.+++...          .....++++...... 
T Consensus       129 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-  196 (570)
T 3c5e_A          129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC----------DGWLNFKKLLNEAST-  196 (570)
T ss_dssp             CCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC----------TTSEEHHHHHHHSCS-
T ss_pred             cCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc----------cccccHHHHhhcccc-
Confidence            999999999999999999999999987665543221 12344555665554210          123456665543321 


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHH-hhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF  239 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l  239 (611)
                      ........++++++|+|||||||.||+|+++|+.+.. ..... ..+     ++..+|++++..|++|.+++.. ++.++
T Consensus       197 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~-----~~~~~d~~~~~~p~~~~~~~~~~~~~~l  270 (570)
T 3c5e_A          197 THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWT-----GLQASDIMWTISDTGWILNILCSLMEPW  270 (570)
T ss_dssp             CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTT-----SCCTTCEEEECCCTTSHHHHHHTTHHHH
T ss_pred             cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhc-----CCCCCceEEEcCchHHHHHHHHHHHHHH
Confidence            1222345789999999999999999999999994332 33332 333     6788999999999999999874 67789


Q ss_pred             hcCceEEEec---CChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          240 RRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       240 ~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      ..|+++++.+   .++..+++.++++++|+++++|+++..|.+..                                   
T Consensus       271 ~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-----------------------------------  315 (570)
T 3c5e_A          271 ALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-----------------------------------  315 (570)
T ss_dssp             HHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-----------------------------------
T ss_pred             HhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-----------------------------------
Confidence            9999999985   39999999999999999999999999886410                                   


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCe
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS  396 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~  396 (611)
                         .        ....+++||.+++||+++++++.+.|.+.+|+++++.||+||++..++.... .....+++|.|++++
T Consensus       316 ---~--------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~  383 (570)
T 3c5e_A          316 ---L--------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKT-MKIKPGYMGTAASCY  383 (570)
T ss_dssp             ---T--------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTT-SCCCTTCCCEECTTC
T ss_pred             ---c--------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcc-cccCCCcccccCCCc
Confidence               0        0012358999999999999999999999889999999999999966554432 233458999999999


Q ss_pred             eEEEeecCCCCCCCCCCCCCcEEEEe-----cCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEE
Q 007257          397 ELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  471 (611)
Q Consensus       397 ~v~i~~~~~~~~~~~~~~~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~  471 (611)
                      +++|+| +++  .+++.|+.|||+|+     |++++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.||+|+
T Consensus       384 ~v~i~d-~~g--~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik  460 (570)
T 3c5e_A          384 DVQIID-DKG--NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIIN  460 (570)
T ss_dssp             CEEEEC-TTS--CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred             eEEEEC-CCC--CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEE
Confidence            999998 554  56778899999999     9999999999999999999999999999999999999999999999999


Q ss_pred             cCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 007257          472 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  548 (611)
Q Consensus       472 ~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  548 (611)
                      + +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++...                .   ..+.+.++|
T Consensus       461 ~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~----------------~---~~~~~~~~l  520 (570)
T 3c5e_A          461 S-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS----------------H---DPEQLTKEL  520 (570)
T ss_dssp             E-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTT----------------S---CHHHHHHHH
T ss_pred             E-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccC----------------c---chHHHHHHH
Confidence            7 9999999999999999999999999997654   478899998765310                0   012234456


Q ss_pred             HHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          549 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       549 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      +++++ ..||.|++|+.|+++++.      |+|++||++|++|++.+.+
T Consensus       521 ~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~  562 (570)
T 3c5e_A          521 QQHVK-SVTAPYKYPRKIEFVLNL------PKTVTGKIQRAKLRDKEWK  562 (570)
T ss_dssp             HHHHH-HHSCGGGSCSEEEEESCC------CBCTTCCBCHHHHHHHHTC
T ss_pred             HHHHH-hhCccccCCcEEEEeccC------CCCCCcCCcHHHHHHHHHh
Confidence            66664 679999999999999765      9999999999999988744

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=4e-74  Score=623.47  Aligned_cols=507  Identities=24%  Similarity=0.269  Sum_probs=320.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|++...  ++..  .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        29 ~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp  104 (550)
T 3rix_A           29 AMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAP  104 (550)
T ss_dssp             HHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEE
T ss_pred             HHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEee
Confidence            578899999987321  2111  169999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++.++++++|+++.....+.... ...+....++.++....         .....++.++.......
T Consensus       105 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  174 (550)
T 3rix_A          105 ANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD---------YQGFQSMYTFVTSHLPP  174 (550)
T ss_dssp             CCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC---------BTTBCBHHHHHHHHCCT
T ss_pred             cCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc---------ccCcccHHHHhhccccc
Confidence            999999999999999999999999988766553322 22345566666554321         11244555555433221


Q ss_pred             C------CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHH
Q 007257          162 E------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE  235 (611)
Q Consensus       162 ~------~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~  235 (611)
                      .      .......++++++++|||||||.||+|+++|+++...+......+  ...++..++++++.+|++|.+++...
T Consensus       175 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~p~~~~~g~~~~  252 (550)
T 3rix_A          175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHGFGMFTT  252 (550)
T ss_dssp             TCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred             cccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcEEEEechHHHHHHHHHH
Confidence            1      111222457899999999999999999999999988876654431  11257789999999999999999888


Q ss_pred             HHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCC
Q 007257          236 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  314 (611)
Q Consensus       236 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (611)
                      +.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+..                                 
T Consensus       253 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------------------------  299 (550)
T 3rix_A          253 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST---------------------------------  299 (550)
T ss_dssp             HHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC---------------------------------
T ss_pred             HHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc---------------------------------
Confidence            888999999999876 9999999999999999999999999886521                                 


Q ss_pred             CcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCc-eeeccccCCCCCceeeccCCCccccCccCCCc
Q 007257          315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  393 (611)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~  393 (611)
                          ..+..        .+++||.+++||+++++++.+++.+.++.. +++.||+||+++.++...... ...+++|.|+
T Consensus       300 ----~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~~~  366 (550)
T 3rix_A          300 ----LIDKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD-DKPGAVGKVV  366 (550)
T ss_dssp             ----GGGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC-CCTTEEEEEC
T ss_pred             ----ccccc--------CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC-CCCCCccccc
Confidence                11111        235899999999999999999999999875 999999999998877766544 3458999999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  472 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~  472 (611)
                      ++++++|+| +++ ..+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+|++
T Consensus       367 ~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~  444 (550)
T 3rix_A          367 PFFEAKVVD-LDT-GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY  444 (550)
T ss_dssp             TTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC---------
T ss_pred             CCcEEEEEe-CCC-CcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEE
Confidence            999999998 433 3677888999999999999999999999999999 7999999999999999999999999999997


Q ss_pred             CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257          473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  549 (611)
Q Consensus       473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  549 (611)
                       +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.++...                +        .++|.
T Consensus       445 -~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~----------------~--------~~~l~  499 (550)
T 3rix_A          445 -KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM----------------T--------EKEIV  499 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC----------------C--------HHHHH
Confidence             9999999999999999999999999997755   378888887764310                1        12333


Q ss_pred             HHHHhCCCCCcceee-eEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHh
Q 007257          550 NAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE  604 (611)
Q Consensus       550 ~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~  604 (611)
                      ++++ .+|+.++.|. .++++++.      |+|++||++|++|++++.+..+.-+.
T Consensus       500 ~~~~-~~l~~~~~~~~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~~~~~~  548 (550)
T 3rix_A          500 DYVA-SQVTTAKKLRGGVVFVDEV------PKGLTGKLDARKIREILIKAKKGGKS  548 (550)
T ss_dssp             --------------------------------------------------------
T ss_pred             HHHH-HhcccccccCCceEEEeec------CCCCCcceeHHHHHHHHHhhcccccc
Confidence            4443 6688776555 58777654      99999999999999999876655443

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.2e-73  Score=630.33  Aligned_cols=521  Identities=18%  Similarity=0.192  Sum_probs=406.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +|+++||++|+++.   ++..+..+++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|||+++|++++
T Consensus        91 ~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~v  167 (663)
T 1ry2_A           91 HALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHS  167 (663)
T ss_dssp             HHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred             HhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence            56789999999986   333455689999999999999999999 89999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHH--------HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVK--------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  152 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  152 (611)
                      |+++.++.+++.++|++++|+++|+++....        ..........+.++.+++++......   ..........|.
T Consensus       168 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~~~~~~~~~~~~  244 (663)
T 1ry2_A          168 VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VAFHAPRDLDWA  244 (663)
T ss_dssp             ECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CCCCSSSEEEHH
T ss_pred             eeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---cccCCCccccHH
Confidence            9999999999999999999999999876421        11111111223455666665321000   000011235677


Q ss_pred             HHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhh-cccccccccCCCCCCcEEEEecchhhHHH
Q 007257          153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILD  231 (611)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~g  231 (611)
                      ++..... ......+..++++++|+|||||||.||||+++|.+++..+.. ....+     ++..+|++++..|++|..+
T Consensus       245 ~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g  318 (663)
T 1ry2_A          245 TEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFFTAGDIGWITG  318 (663)
T ss_dssp             HHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEEECSCTTSHHH
T ss_pred             HHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEEEcCCcHHhhh
Confidence            7665332 222334557899999999999999999999999998766543 33334     6888999999999999999


Q ss_pred             HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  305 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (611)
                      +.+ ++.++..|+++++++.     ++..+++.|+++++|+++++|++++.|.+...                       
T Consensus       319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----------------------  375 (663)
T 1ry2_A          319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD-----------------------  375 (663)
T ss_dssp             HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-----------------------
T ss_pred             hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc-----------------------
Confidence            855 6778999999999863     78999999999999999999999988753110                       


Q ss_pred             HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccC--
Q 007257          306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFP--  380 (611)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~--  380 (611)
                                  ...+.        ..+++||.+++||+++++++.+++.+.+|   +++++.||+||+++.++...+  
T Consensus       376 ------------~~~~~--------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~  435 (663)
T 1ry2_A          376 ------------SYIEN--------HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG  435 (663)
T ss_dssp             ------------TSSSS--------CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT
T ss_pred             ------------ccccc--------CCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC
Confidence                        00001        12359999999999999999999999887   899999999999987766544  


Q ss_pred             CCccccCccCCCccCeeEEEeecC-CCCCCCCCC-CCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEE
Q 007257          381 DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQ  453 (611)
Q Consensus       381 ~~~~~~~~~G~~~~~~~v~i~~~~-~~~~~~~~~-~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~  453 (611)
                      .....++++|.|+++++++|+| + ++  .+++. |+.|||+|+|  |+++.|||++++.+.+.|   .+|||+|||+|+
T Consensus       436 ~~~~~~gs~G~p~~g~~v~i~d-~~~g--~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~  512 (663)
T 1ry2_A          436 VTPMKPGSASFPFFGIDAVVLD-PNTG--EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAA  512 (663)
T ss_dssp             CCCCCTTCCCEECTTCCEEEEC-SSST--TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEE
T ss_pred             CcccCCCccccCcCCCeEEEEc-CCCC--CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEE
Confidence            2234568999999999999998 5 43  34444 7899999999  589999999999998887   379999999999


Q ss_pred             EccCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCc
Q 007257          454 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  530 (611)
Q Consensus       454 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~  530 (611)
                      +|+||++++.||.||+||+ +|++|+|.+||++|.+||+|.||+|++.++.   +.++|+|+++++....     ..   
T Consensus       513 ~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~-----~~---  583 (663)
T 1ry2_A          513 KDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS-----TA---  583 (663)
T ss_dssp             ECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----------------
T ss_pred             EcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc-----cc---
Confidence            9999999999999999997 8999999999999999999999999998754   4799999998753100     00   


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 007257          531 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  602 (611)
Q Consensus       531 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~  602 (611)
                           .+. ..+.+.++|+++++ +.|+.|++|+.|+++++.      |+|++||++|++|++.+.++++.+
T Consensus       584 -----~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~~~  642 (663)
T 1ry2_A          584 -----TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAGESDQL  642 (663)
T ss_dssp             ----------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC------
T ss_pred             -----cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCccCchHHHHHHHHcCCCCCC
Confidence                 000 00023445566665 679999999999998765      999999999999999987765443

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=2.2e-73  Score=612.31  Aligned_cols=481  Identities=22%  Similarity=0.276  Sum_probs=315.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.    +     +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        15 ~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp   85 (509)
T 3ivr_A           15 NAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP   85 (509)
T ss_dssp             HHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEe
Confidence            57889999999986    3     79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.+++++++++++|++......+.... ...+....++.+++..              ..+.++.......
T Consensus        86 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~  150 (509)
T 3ivr_A           86 VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------GPFAPFKDLASDT  150 (509)
T ss_dssp             CCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------SSCEEGGGTCCCS
T ss_pred             cCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------cChhhHhhccCCC
Confidence            999999999999999999999999988766533322 2334555666655421              1122222212122


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|+++.+.+......+     ++..+|++++.+|++|.+++...+.++..
T Consensus       151 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~~~  225 (509)
T 3ivr_A          151 PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVTGLGLMLTLQQA  225 (509)
T ss_dssp             CCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred             CCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchhHHHHHHHHHHh
Confidence            3334456789999999999999999999999999999988877766     78899999999999999999887765544


Q ss_pred             -CceEEEecCChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHH
Q 007257          242 -GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  320 (611)
Q Consensus       242 -G~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (611)
                       |+++++...++..+++.++++++|+++++|+++..+++...                                      
T Consensus       226 ~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------------------  267 (509)
T 3ivr_A          226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------------------  267 (509)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--------------------------------------
T ss_pred             CCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--------------------------------------
Confidence             55555444499999999999999999999999999875320                                      


Q ss_pred             HHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEE
Q 007257          321 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR  399 (611)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~  399 (611)
                               ...+++++.++.+|++   +..+.+.+.+ ++++++.||+||++++++.......  ..++|+|+++++++
T Consensus       268 ---------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~~G~p~~~~~~~  333 (509)
T 3ivr_A          268 ---------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVA  333 (509)
T ss_dssp             ---------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTSCCEECTTCEEE
T ss_pred             ---------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCcccccCCCcEEE
Confidence                     0111489999999987   8888888888 9999999999999987776554322  24589999999999


Q ss_pred             EeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEecc--CCeEEcCCcee
Q 007257          400 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK--KNLIKISQGEY  477 (611)
Q Consensus       400 i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~--~d~i~~~~G~~  477 (611)
                      ++| +++  .+++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++++||++++.||.  +|+||+ +|++
T Consensus       334 i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~G~~  409 (509)
T 3ivr_A          334 VVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-GGEN  409 (509)
T ss_dssp             EEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-------------
T ss_pred             EEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEE-CCEE
Confidence            998 554  5677889999999999999999999999999999999999999999999999999999  999996 9999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      |+|.+||++|.+||+|.+|+|++.++.   +.++|++++.++...                +        .++|++++ +
T Consensus       410 v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~----------------~--------~~~l~~~l-~  464 (509)
T 3ivr_A          410 VYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI----------------A--------ADALAEFV-A  464 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC----------------C--------HHHHHHHH-H
Confidence            999999999999999999999997755   368888887764210                1        12344444 3


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      +.||.|++|+.|+++++.      |+|++||++|++|++++++.
T Consensus       465 ~~L~~~~~P~~i~~v~~l------P~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          465 SLIARYKKPKHVVFVEAL------PKDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             --------------------------------------------
T ss_pred             hhCcccCCCcEEEEecCC------CCCCCCCccHHHHHHHHhhc
Confidence            789999999999998664      99999999999999998663

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=2.1e-72  Score=604.76  Aligned_cols=477  Identities=18%  Similarity=0.217  Sum_probs=398.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~-Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +|+++||++|+++.    +     +++||+||.++++++|++|.+. |+++|++|+++++|++++++++|||+++|++++
T Consensus        10 ~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v   80 (511)
T 3e7w_A           10 HAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI   80 (511)
T ss_dssp             HHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence            57899999999986    3     7999999999999999999886 888999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      |+++.++.+++.++++.++++++|+++.........                            ......+.++......
T Consensus        81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~  132 (511)
T 3e7w_A           81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ----------------------------QIQTVSAEELLENEGG  132 (511)
T ss_dssp             EEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC----------------------------SSCEEEHHHHHTSCSC
T ss_pred             ecCCCChHHHHHHHHHhCCCCEEEecccccchhccc----------------------------ccceecHhhhhccccC
Confidence            999999999999999999999999975432111000                            0123344555443333


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR  240 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~  240 (611)
                      .........++++++++|||||||.||+|+++|+++.+.+......+     ++..++++++..|++|.+++...+.++.
T Consensus       133 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~  207 (511)
T 3e7w_A          133 SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLSVMDLYPCLQ  207 (511)
T ss_dssp             CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHHHHHHHHHHH
T ss_pred             CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHHHHHHHHHHh
Confidence            33333445788999999999999999999999999999888877666     7889999999999999999888888899


Q ss_pred             cCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          241 RGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       241 ~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      .|+++++.+.    ++..+++.++++++|+++++|+++..+.....                                  
T Consensus       208 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------------  253 (511)
T 3e7w_A          208 SGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG----------------------------------  253 (511)
T ss_dssp             TTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT----------------------------------
T ss_pred             cCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc----------------------------------
Confidence            9999999864    88999999999999999999999988754110                                  


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC----ccccCccCC
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGP  391 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G~  391 (611)
                         .        ....++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    .....++|.
T Consensus       254 ---~--------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~  322 (511)
T 3e7w_A          254 ---F--------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF  322 (511)
T ss_dssp             ---C--------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred             ---c--------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence               0        011235899999999999999999999998 899999999999998776543321    122367899


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc--cCC--ccccCceEEEccCCeEEEEeccC
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~g--~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      |+++++++|+| +++  .+++.|+.|||+|+||+++.||+++++.+.+.|  .+|  ||+|||+|++ +||++++.||.|
T Consensus       323 ~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~  398 (511)
T 3e7w_A          323 AKPDMNIFIMD-EEG--QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLD  398 (511)
T ss_dssp             ECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESS
T ss_pred             eeCCCEEEEEC-CCC--CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEcccc
Confidence            99999999998 554  567788999999999999999999999999999  344  8999999999 599999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      |+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.++...                ..    ..+
T Consensus       399 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~----------------~~----~~~  457 (511)
T 3e7w_A          399 FQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFE----------------KE----FQL  457 (511)
T ss_dssp             SEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCS----------------SH----HHH
T ss_pred             CEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccccc----------------ch----hhH
Confidence            99998 9999999999999999999999999987644   479999998764200                11    123


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                      .+.|+++++ ++||.|++|+.++++++.      |+|++||++|++|++.+.+
T Consensus       458 ~~~l~~~l~-~~L~~~~~P~~~~~v~~l------P~t~~GKi~R~~L~~~~~~  503 (511)
T 3e7w_A          458 TSAIKKELA-ASLPAYMIPRKFIYQDHI------QMTANGKIDRKRIGEEVLV  503 (511)
T ss_dssp             HHHHHHHHH-HHSCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHH-hhCchhhCCeeEEEeccC------CCCCCcCccHHHHHhHHhh
Confidence            345556654 679999999999998665      9999999999999998865

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=8e-73  Score=608.47  Aligned_cols=479  Identities=19%  Similarity=0.208  Sum_probs=392.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        10 ~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp   80 (512)
T 3fce_A           10 WAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP   80 (512)
T ss_dssp             HHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            57889999999986   3      79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc-ccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL-GKV  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  160 (611)
                      +++.++.+++.++++.+++++++++.......        .. ..++..+                  .+..+... ...
T Consensus        81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~~~~~~~~~~  133 (512)
T 3fce_A           81 VDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLKDIFFTHKGN  133 (512)
T ss_dssp             EETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHHHHHHHTTTC
T ss_pred             eCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhhhhccccccc
Confidence            99999999999999999999999975422110        00 0111100                  11111111 111


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR  240 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~  240 (611)
                      .........++++++++|||||||.||+|+++|.++.+.+......+     ++..+|++++.+|++|.+++...+.+++
T Consensus       134 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~  208 (512)
T 3fce_A          134 TPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLSVMDIYPSLV  208 (512)
T ss_dssp             CCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGGHHHHHHHHH
T ss_pred             CCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHHHHHHHHHHh
Confidence            22223345789999999999999999999999999999888877666     7889999999999999999888888999


Q ss_pred             cCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          241 RGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       241 ~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      .|+++++.+.    ++..+++.++++++|+++++|+++..++....                                  
T Consensus       209 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------------  254 (512)
T 3fce_A          209 TGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS----------------------------------  254 (512)
T ss_dssp             TTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT----------------------------------
T ss_pred             CCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc----------------------------------
Confidence            9999999874    89999999999999999999999988753110                                  


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC----ccccCccCC
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGP  391 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G~  391 (611)
                         ..        ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    .....++|.
T Consensus       255 ---~~--------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~  323 (512)
T 3fce_A          255 ---FS--------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY  323 (512)
T ss_dssp             ---CS--------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred             ---cc--------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence               00        11235899999999999999999999988 899999999999998776554332    123467899


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc----CCccccCceEEEccCCeEEEEeccC
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      |.++++++++| +++  .+++.|+.|||+|+||+++.||+++++.+.+.|.    +|||+|||+|++ +||++++.||.|
T Consensus       324 ~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~  399 (512)
T 3fce_A          324 CKSDCRLLIMK-EDG--TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLD  399 (512)
T ss_dssp             ECTTCEEEEEC-SSS--CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGG
T ss_pred             ccCCcEEEEEC-CCC--CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccC
Confidence            99999999998 554  4667788999999999999999999999999983    469999999999 799999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      |+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|+++++..          .      .    ...+
T Consensus       400 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------~----~~~~  458 (512)
T 3fce_A          400 FQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF----------E------K----EFKL  458 (512)
T ss_dssp             GCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC----------S------S----HHHH
T ss_pred             CEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc----------c------c----hhhh
Confidence            99998 9999999999999999999999999986544   37899999876420          0      1    1123


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      .+.|+++++ ++||.|++|+.++++++.      |+|++||++|++|++.++++
T Consensus       459 ~~~l~~~l~-~~L~~~~~P~~~~~~~~l------P~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          459 TSAIKKELN-ERLPNYMIPRKFMYQSSI------PMTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             HHHHHHHHH-TTSCGGGSCSEEEECSCC------CBCTTSSBCHHHHHHHHHC-
T ss_pred             HHHHHHHHH-hhCchhcCCeEEEEeccc------CCCCCcChHHHHHHhhhhhc
Confidence            345666665 789999999999998665      99999999999999998763

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2e-71  Score=609.98  Aligned_cols=488  Identities=18%  Similarity=0.186  Sum_probs=401.3

Q ss_pred             CCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEeeCCCCC
Q 007257            7 PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTL   86 (611)
Q Consensus         7 pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~   86 (611)
                      ||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|++|.+
T Consensus        39 pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~  109 (617)
T 3rg2_A           39 SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSH  109 (617)
T ss_dssp             CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTC
T ss_pred             CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccc
Confidence            999999986   3      7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhhcCccEEEEcchhHH----HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccccC
Q 007257           87 GPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  162 (611)
Q Consensus        87 ~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (611)
                      +.+++.++++++++++++++.....    ..........+....+....+...             ..+.+..... ...
T Consensus       110 ~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~  175 (617)
T 3rg2_A          110 QRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-------------HNLQDAINHP-AED  175 (617)
T ss_dssp             CHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-------------TBHHHHHHSC-CSS
T ss_pred             cHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-------------cchhhhhccc-ccc
Confidence            9999999999999999999876531    111111112233444444443221             1223332222 122


Q ss_pred             CcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH--HHHHhh
Q 007257          163 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI--EEYFFR  240 (611)
Q Consensus       163 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~--~~~~l~  240 (611)
                      ....+..++++++++|||||||.||||+++|+++.+.+......+     ++..++++++.+|++|.+++..  .+.++.
T Consensus       176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~  250 (617)
T 3rg2_A          176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAAHNYAMSSPGSLGVFL  250 (617)
T ss_dssp             CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred             cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccchhhhhhhHHHHHHHHH
Confidence            233455789999999999999999999999999999988877776     7889999999999999999875  677899


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..++..++++++|++.++|+++..+.+.......                                 
T Consensus       251 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------------------  297 (617)
T 3rg2_A          251 AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------------------  297 (617)
T ss_dssp             HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC---------------------------------
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc---------------------------------
Confidence            9999999876 899999999999999999999999988764321100                                 


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc-cCeeE
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS-VYSEL  398 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~-~~~~v  398 (611)
                                ...+++||.+++||+++++++.+.+.+.+|++++|.||+||++..+............++|.|+ ++.++
T Consensus       298 ----------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~  367 (617)
T 3rg2_A          298 ----------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEV  367 (617)
T ss_dssp             ----------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEE
T ss_pred             ----------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceE
Confidence                      0012589999999999999999999999999999999999998655443333233346788887 78899


Q ss_pred             EEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEcCCcee
Q 007257          399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY  477 (611)
Q Consensus       399 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~  477 (611)
                      +++| +++  .+++.|+.|||+|+|++++.||+++++.|.+.| .+|||+|||+|++++||.+++.||.||+||+ +|++
T Consensus       368 ~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki-~G~r  443 (617)
T 3rg2_A          368 WVAD-AEG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINR-GGEK  443 (617)
T ss_dssp             EEEC-TTS--CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEE-TTEE
T ss_pred             EEEC-CCC--CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEE-CCEE
Confidence            9998 554  567788999999999999999999999999999 7899999999999999999999999999997 9999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      |+|.+||++|.+||+|.+|+|++.++.   +.++|++++.+..                  +.        .++++++++
T Consensus       444 i~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~--------~~l~~~l~~  497 (617)
T 3rg2_A          444 IAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RA--------VQVRRFLRE  497 (617)
T ss_dssp             EEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------HHHHHHHHT
T ss_pred             eCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CH--------HHHHHHHHh
Confidence            999999999999999999999986543   4788888877532                  21        234455543


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  601 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~  601 (611)
                      ..||.|++|..++++++.      |+|++||++|++|++.+......
T Consensus       498 ~~lp~~~vP~~~~~v~~l------P~t~~GKidR~~L~~~~~~~~~~  538 (617)
T 3rg2_A          498 QGIAEFKLPDRVECVDSL------PLTAVGKVDKKQLRQWLASRASA  538 (617)
T ss_dssp             TTCCGGGSCSEEEECSCC------CBCTTSSBCHHHHHHHHHHHHHH
T ss_pred             CCCccccCCcEEEEeccc------CCCCCCCCcHHHHHHHHhccccc
Confidence            479999999999998665      99999999999999998776544

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.9e-71  Score=600.21  Aligned_cols=489  Identities=21%  Similarity=0.229  Sum_probs=387.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+ +||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        33 ~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp  102 (529)
T 2v7b_A           33 NET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVV  102 (529)
T ss_dssp             TGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEE
T ss_pred             hhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEe
Confidence            466 9999999975   2      68999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCc-cEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      +++.++.+++.+++++++++++|+++.....+..... ..+.. ..++..+.....        ......++++..... 
T Consensus       103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-  172 (529)
T 2v7b_A          103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRESE--------PRLAPLFEELIDAAA-  172 (529)
T ss_dssp             CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------CCCBHHHHHHTSC-
T ss_pred             cCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEecccccc--------cccccchhhhhccCC-
Confidence            9999999999999999999999999876554322211 11122 344443332110        001224555554221 


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhH-HHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHH
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYF  238 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~  238 (611)
                      .........++++++++|||||||.||+|+++|+++ ..........+     ++..+|++++..|++|.+++.. .+.+
T Consensus       173 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~  247 (529)
T 2v7b_A          173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFFAYGLGNGLTFP  247 (529)
T ss_dssp             CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred             CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence            122233457899999999999999999999999999 56555544444     6788999999999999999876 5568


Q ss_pred             hhcCceEEEec-C-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          239 FRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       239 l~~G~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      +..|+++++.+ . ++..+++.++++++|+++++|+++..+.....     .                            
T Consensus       248 l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----~----------------------------  294 (529)
T 2v7b_A          248 LSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----L----------------------------  294 (529)
T ss_dssp             HHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----C----------------------------
T ss_pred             HhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----c----------------------------
Confidence            99999999873 3 89999999999999999999999988754110     0                            


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCe
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS  396 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~  396 (611)
                      ..            ....++|.+++||+++++++.+.+.+.+|+++++.||+||++.+........ ...+++|.|++++
T Consensus       295 ~~------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~  361 (529)
T 2v7b_A          295 PA------------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VEYGTTGRPVPGY  361 (529)
T ss_dssp             CC------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CCTTSCCEECTTC
T ss_pred             cc------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-CccCCcccCCCCC
Confidence            00            0003799999999999999999999989999999999999987766654443 3448899999999


Q ss_pred             eEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCce
Q 007257          397 ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE  476 (611)
Q Consensus       397 ~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~  476 (611)
                      +++|+| +++  .+++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++++||++++.||.||+||+ +|+
T Consensus       362 ~~~i~d-~~g--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~  437 (529)
T 2v7b_A          362 EIELRD-EAG--HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV-SGQ  437 (529)
T ss_dssp             EEEEEC-TTS--CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC-----
T ss_pred             EEEEEC-CCC--CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEE-CCE
Confidence            999998 554  4667889999999999999999999999999999999999999999999999999999999997 999


Q ss_pred             ecCcHHHHHHHhcCcCcceEEEEecCC--CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 007257          477 YVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  554 (611)
Q Consensus       477 ~v~~~~iE~~l~~~p~V~~~~v~~~~~--~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  554 (611)
                      +|+|.+||++|.+||+|.+|+|++...  .+.++|+|++.++..                 ....    +.++|+++++ 
T Consensus       438 ~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~----~~~~l~~~l~-  495 (529)
T 2v7b_A          438 YVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEI----LAEELKAFVK-  495 (529)
T ss_dssp             CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHH----HHHHHHHHHH-
T ss_pred             EECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchh----HHHHHHHHHH-
Confidence            999999999999999999999999732  247889999876420                 0111    2235566665 


Q ss_pred             CCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          555 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       555 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      ++||.|++|+.++++++.      |+|++||++|++|++
T Consensus       496 ~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          496 DRLAPHKYPRDIVFVDDL------PKTATGKIQRFKLRE  528 (529)
T ss_dssp             TTSCTTTSCSEEEEESCC------CBCTTSCBCHHHHHC
T ss_pred             hhcchhhCCeEEEEeccC------CCCCccchhHHhHhh
Confidence            789999999999999765      999999999999975

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=5.7e-72  Score=611.71  Aligned_cols=465  Identities=18%  Similarity=0.152  Sum_probs=376.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        36 ~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vp  106 (620)
T 4dg8_A           36 MAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLY  106 (620)
T ss_dssp             HHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            57889999999987   3      79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++++++++++++.......        .....+                      .+...  .....
T Consensus       107 ld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~----------------------~~~~~--~~~~~  154 (620)
T 4dg8_A          107 IDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV----------------------PVRHL--PAAPA  154 (620)
T ss_dssp             CCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE----------------------EGGGC--CCCCC
T ss_pred             eCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee----------------------eeccC--CcCCc
Confidence            99999999999999999999999765432211        000000                      00000  00011


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||||+++|+++.+.+.. ...+     ++..++++++..|++|..++...+.++..
T Consensus       155 ~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~  228 (620)
T 4dg8_A          155 SVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAATLEIWGALLN  228 (620)
T ss_dssp             CSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred             cccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHHHHHHHHHHhc
Confidence            11223346899999999999999999999999999887765 3333     68889999999999999999888889999


Q ss_pred             CceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          242 GASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       242 G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      |+++++.+.   ++..+++.++++++|+++++|+++..+.+...                                    
T Consensus       229 G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------------  272 (620)
T 4dg8_A          229 GGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------------  272 (620)
T ss_dssp             TCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------------------
T ss_pred             CCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------------------
Confidence            999999753   89999999999999999999999988864210                                    


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC---ccccCccCCCcc
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMVGTAGPVSV  394 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~G~~~~  394 (611)
                                  ..+++||.+++||++++++..+.+.+.+ +++++|.||+||++.+++......   .....++|+|++
T Consensus       273 ------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~  340 (620)
T 4dg8_A          273 ------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIA  340 (620)
T ss_dssp             ------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECT
T ss_pred             ------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceeccc
Confidence                        0124899999999999988888877665 899999999999998766543322   233468999999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccC--------CccccCceEEEccCCeEEEEecc
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~--------g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      +++++|+| +++. ..++.|+.|||+|+|++++.||+++++.|.+.|.+        +||+|||+|++++||++++.||.
T Consensus       341 ~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~  418 (620)
T 4dg8_A          341 GTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRG  418 (620)
T ss_dssp             TEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECS
T ss_pred             CcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccC
Confidence            99999998 5544 34567889999999999999999999999999943        79999999999999999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCCC--eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~--~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      ||+||+ +|++|+|.|||++|.+||+|.+|+|++.++..  .++++++...+.             +         .+  
T Consensus       419 dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-------------~---------~~--  473 (620)
T 4dg8_A          419 DGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-------------S---------PQ--  473 (620)
T ss_dssp             SSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------C---------CH--
T ss_pred             CCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-------------H---------HH--
Confidence            999998 99999999999999999999999999866543  455555543211             0         01  


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  601 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~  601 (611)
                            .+ .+.||.|++|+.+++++..      |+|++||++|++|++.|.+.++.
T Consensus       474 ------~l-~~~Lp~y~~P~~~~~v~~l------P~t~~GKidR~~L~~~~~~~~~~  517 (620)
T 4dg8_A          474 ------AL-LRQLPTWQRPHACVRVEAL------PLTAHGKLDRAALLRRLEEPLER  517 (620)
T ss_dssp             ------HH-HHHSCGGGSCSEEEECSSC------CCC----CCHHHHHHHTCSCC--
T ss_pred             ------HH-HHhChhhcCCcEEEEECcC------CCCcccCHhHHHHhhcccccccc
Confidence                  11 2469999999999998665      99999999999999887554433

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.8e-72  Score=611.31  Aligned_cols=466  Identities=20%  Similarity=0.190  Sum_probs=305.9

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        84 ~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp  154 (570)
T 4gr5_A           84 QAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTM  154 (570)
T ss_dssp             HHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEE
Confidence            57889999999986   3      79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++.++++++|++......+        .....++..+...                      .....
T Consensus       155 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~----------------------~~~~~  204 (570)
T 4gr5_A          155 LDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA----------------------SDAPA  204 (570)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC-----------------------------C
T ss_pred             cCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc----------------------ccccc
Confidence            99999999999999999999999987643322        1111221111100                      00011


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|+++|+++.+.+... ..+     ++..++++++.+|++|..+...++.+++.
T Consensus       205 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~  278 (570)
T 4gr5_A          205 GNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWDAFGLELFGALLF  278 (570)
T ss_dssp             CCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSSTHHHHHHHHHTT
T ss_pred             cccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHHHHHHHHHHHHhc
Confidence            122234578999999999999999999999999998766542 222     67889999999999987777777888999


Q ss_pred             CceEEEecC---ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          242 GASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       242 G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      |+++++.+.   ++..+++.++++++|++.++|+++..|.+....                                   
T Consensus       279 G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------------------------------  323 (570)
T 4gr5_A          279 GARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-----------------------------------  323 (570)
T ss_dssp             TCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------------
T ss_pred             CCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------------
Confidence            999999863   899999999999999999999999988652110                                   


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC---ccccCccCCCcc
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMVGTAGPVSV  394 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~G~~~~  394 (611)
                                   .+++||.+++||++++++..+.+.+.+ ++.+++.||+||++++++......   .....++|+|++
T Consensus       324 -------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~  390 (570)
T 4gr5_A          324 -------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLA  390 (570)
T ss_dssp             -------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECT
T ss_pred             -------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeC
Confidence                         124899999999999999999888877 899999999999998776554322   223356899999


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cC--------CccccCceEEEccCCeEEEEec
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQILPNGVVKIIDR  465 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~--------g~~~TGD~~~~~~dG~l~~~GR  465 (611)
                      +++++|+| +++  .+++.|+.|||+|+|++++.||+++++.+.+.| .+        |||+|||+|++|+||+|++.||
T Consensus       391 ~~~v~i~d-~~~--~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR  467 (570)
T 4gr5_A          391 GKRAYVLD-DDL--KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR  467 (570)
T ss_dssp             TEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC
T ss_pred             CCEEEEEC-CCC--CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcc
Confidence            99999998 554  567788999999999999999999999999998 33        6999999999999999999999


Q ss_pred             cCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHH
Q 007257          466 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  542 (611)
Q Consensus       466 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (611)
                      .||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++..+...                       
T Consensus       468 ~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~-----------------------  523 (570)
T 4gr5_A          468 ADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP-----------------------  523 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC-----------------------
Confidence            9999997 9999999999999999999999999997654   478888887653210                       


Q ss_pred             HHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          543 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       543 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                      ...++|+++++ ++|+.|++|+.++++++.      |+|++||++|++|++.
T Consensus       524 ~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          524 PDAAELRRHVA-EALPAYMVPVECVPVDEL------PRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ----------------------------------------------------
T ss_pred             cCHHHHHHHHH-hhCccccCCcEEEEcccC------CCCCCcCcchHhhhcc
Confidence            01223444443 779999999999988665      9999999999999864

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=8.3e-72  Score=602.15  Aligned_cols=483  Identities=16%  Similarity=0.139  Sum_probs=385.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+.+.    +     +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        13 ~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vp   83 (521)
T 3l8c_A           13 FAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIP   83 (521)
T ss_dssp             HHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence            57889999999986    3     79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc--c
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG--K  159 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  159 (611)
                      +++.++.+++.++++.++++++|++++.....        ... .                     ...+.++....  .
T Consensus        84 l~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~-~---------------------~~~~~~~~~~~~~~  133 (521)
T 3l8c_A           84 VDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI-S---------------------LVSLSEIESAKLAE  133 (521)
T ss_dssp             EETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS-E---------------------EEEHHHHHHHHHHT
T ss_pred             cCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC-c---------------------ccchhhhhhccccc
Confidence            99999999999999999999999987532211        000 1                     11222221111  1


Q ss_pred             ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHh
Q 007257          160 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF  239 (611)
Q Consensus       160 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l  239 (611)
                      ..........++++++++|||||||.||+|+++|+++.+.+.......   ......++++++..|++|..++...+.++
T Consensus       134 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  210 (521)
T 3l8c_A          134 MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFDLSVMYWAPTL  210 (521)
T ss_dssp             CCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSGGGHHHHHHHH
T ss_pred             CCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHHHHHHHHHHHH
Confidence            112223456789999999999999999999999999998776654331   12678899999999999998887788889


Q ss_pred             hcCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007257          240 RRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  315 (611)
Q Consensus       240 ~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (611)
                      ..|+++++.+.    ++..+++.+.++++|++.++|+++..+.....                                 
T Consensus       211 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------------  257 (521)
T 3l8c_A          211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD---------------------------------  257 (521)
T ss_dssp             HTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT---------------------------------
T ss_pred             hcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc---------------------------------
Confidence            99999998865    88999999999999999999999987653110                                 


Q ss_pred             cchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC----ccccCccC
Q 007257          316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAG  390 (611)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~----~~~~~~~G  390 (611)
                          ..        ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    .....++|
T Consensus       258 ----~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG  325 (521)
T 3l8c_A          258 ----FC--------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIG  325 (521)
T ss_dssp             ----CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEE
T ss_pred             ----cc--------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccc
Confidence                00        01125899999999999999999999888 899999999999998776543321    12336799


Q ss_pred             CCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc----cCCccccCceEEEccCCeEEEEecc
Q 007257          391 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       391 ~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~----~~g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      +|+++++++|+| +++  .+++.|+.|||+|+||+++.||+++++.+.+.|    .+|||+|||+|++|+||++++.||.
T Consensus       326 ~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~  402 (521)
T 3l8c_A          326 YPKPDSPTYIID-EDG--KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRL  402 (521)
T ss_dssp             EECTTSCEEEEC-TTS--CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEG
T ss_pred             cccCCCEEEEEC-CCc--CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcc
Confidence            999999999998 554  466778899999999999999999999999998    3579999999999999999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC----CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  542 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (611)
                      ||+|++ +|++|+|.+||++|.+||+|.+|+|++..+.    +.++|+|+++++....               .+.  ..
T Consensus       403 ~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~---------------~~~--~~  464 (521)
T 3l8c_A          403 DFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER---------------FDR--EL  464 (521)
T ss_dssp             GGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG---------------CSS--HH
T ss_pred             cceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc---------------ccc--ch
Confidence            999997 8999999999999999999999999986533    4789999988753100               000  11


Q ss_pred             HHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          543 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       543 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                      .+.++|+++++ ++||.|++|+.|+++++.      |+|++||++|++|+++++++-
T Consensus       465 ~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKidr~~L~~~~~~~~  514 (521)
T 3l8c_A          465 ELTKAIKASVK-DHMMSYMMPSKFLYRDSL------PLTPNGKIDIKTLINEVNNRE  514 (521)
T ss_dssp             HHHHHHHHHSG-GGSCGGGSCSEEEECSSC------CBCTTSSBCHHHHHHHTC---
T ss_pred             hhHHHHHHHHH-hhCccccCCeEEEEeccc------CCCCCcCccHHHHhhhhhcCC
Confidence            23456666665 789999999999998765      999999999999999986643

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.1e-71  Score=602.35  Aligned_cols=464  Identities=20%  Similarity=0.228  Sum_probs=381.8

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        48 ~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp  118 (563)
T 1amu_A           48 QVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVP  118 (563)
T ss_dssp             HHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEE
Confidence            57889999999976   3      79999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++.++++++|+++..........     ....+..++....                    ... ..
T Consensus       119 l~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------------~~~-~~  172 (563)
T 1amu_A          119 IDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI--------------------KIR-EG  172 (563)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT--------------------TTS-CC
T ss_pred             eCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh--------------------ccc-cC
Confidence            999999999999999999999999987654432211     1112222222100                    000 01


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      .....+..++++++++|||||||.||||++||+++.+.+......+     ++..+|++++..|++|..++..++.+++.
T Consensus       173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~~  247 (563)
T 1amu_A          173 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASVWEMFMALLT  247 (563)
T ss_dssp             SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred             ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHHHHHHHHHHC
Confidence            1112345678999999999999999999999999998877766555     78899999999999999998778888999


Q ss_pred             CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      |+++++.+.    ++..+++.++++++|+++++|+++..+...                                     
T Consensus       248 G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------------------  290 (563)
T 1amu_A          248 GASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------------------------------------  290 (563)
T ss_dssp             TCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------------
T ss_pred             CCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------------
Confidence            999998864    889999999999999999999988765320                                     


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC--ccccCccCCCccC
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVY  395 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~--~~~~~~~G~~~~~  395 (611)
                                    .++++|.+++||+++++++.+.|.+  .+++++.||+||++.+++......  .....++|+|+++
T Consensus       291 --------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~  354 (563)
T 1amu_A          291 --------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQN  354 (563)
T ss_dssp             --------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTT
T ss_pred             --------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccceeCC
Confidence                          1248999999999999999999876  478999999999998766544322  2234689999999


Q ss_pred             eeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------CCccccCceEEEccCCeEEEEeccCC
Q 007257          396 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKKN  468 (611)
Q Consensus       396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~dG~l~~~GR~~d  468 (611)
                      ++++|+| +++  .+++.|+.|||+|+|++++.||+++++.|.+.|.       +|||+|||+|++|+||++++.||.||
T Consensus       355 ~~v~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d  431 (563)
T 1amu_A          355 TQIYIVD-ENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDN  431 (563)
T ss_dssp             EEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGG
T ss_pred             CEEEEEC-CCc--CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccC
Confidence            9999998 554  4667788999999999999999999999999983       35999999999999999999999999


Q ss_pred             eEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 007257          469 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  545 (611)
Q Consensus       469 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (611)
                      +|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++....                  +.        
T Consensus       432 ~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------~~--------  484 (563)
T 1amu_A          432 QVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------PL--------  484 (563)
T ss_dssp             EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------CH--------
T ss_pred             EEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------CH--------
Confidence            9997 9999999999999999999999999987654   3788999876421                  11        


Q ss_pred             HHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHH
Q 007257          546 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  595 (611)
Q Consensus       546 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  595 (611)
                      ++|+++++ ++||.|++|+.|+++++.      |+|++||++|++|++.+
T Consensus       485 ~~l~~~l~-~~L~~y~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          485 EQLRQFSS-EELPTYMIPSYFIQLDKM------PLTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             HHHHHHHH-HHSCGGGSCSEEEECSSC------CBCTTSSBCGGGSCCCC
T ss_pred             HHHHHHHH-hhCchhhCCcEEEEeccc------CCCCCcChhHHhcCCcc
Confidence            23444443 679999999999998765      99999999999998754

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.6e-71  Score=596.90  Aligned_cols=483  Identities=22%  Similarity=0.223  Sum_probs=367.1

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|++|.+.   +||+|+++++|++++++++|||+++|++++|
T Consensus        10 ~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp   77 (501)
T 3ipl_A           10 QAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM   77 (501)
T ss_dssp             HHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence            57889999999986   3      6999999999999999999987   8999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCce-eeHHHHHhcccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWDEFLHLGKV  160 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  160 (611)
                      +++.++.+++.++++.++++++|++............  ......+.........   ......... .....+......
T Consensus        78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  152 (501)
T 3ipl_A           78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSNETVVPKESP  152 (501)
T ss_dssp             CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------------CCH
T ss_pred             cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccchhhccccCCc
Confidence            9999999999999999999999998765433211110  0111111100000000   000000000 000111111111


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR  240 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~  240 (611)
                      .........++++++++|||||||.||+|.++|+++...+......+     ++..++++++..|++|.+|+...+.++.
T Consensus       153 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~l~  227 (501)
T 3ipl_A          153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGLSVLLRAVI  227 (501)
T ss_dssp             HHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHHHHHHHHHH
Confidence            11122345789999999999999999999999999999888877666     7889999999999999999988888999


Q ss_pred             cCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          241 RGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       241 ~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      .|+++++.+. ++..+++.++++++|+++++|+++..|.+....                                    
T Consensus       228 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------  271 (501)
T 3ipl_A          228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH------------------------------------  271 (501)
T ss_dssp             HTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC------------------------------------
T ss_pred             cCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC------------------------------------
Confidence            9999999877 999999999999999999999999988652110                                    


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC-ccccCccCCCccCeeE
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSEL  398 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~G~~~~~~~v  398 (611)
                                  ...+||.+++||+++++++.+.+.+ +++++++.||+||+++.+....+.. ....+++|.|++++++
T Consensus       272 ------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~  338 (501)
T 3ipl_A          272 ------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDV  338 (501)
T ss_dssp             ------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEE
T ss_pred             ------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEE
Confidence                        0027999999999999999999987 5999999999999987655544322 2345789999999999


Q ss_pred             EEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceec
Q 007257          399 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV  478 (611)
Q Consensus       399 ~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v  478 (611)
                      ++++ ++       .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||++++.||.||+|++ +|++|
T Consensus       339 ~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~v  408 (501)
T 3ipl_A          339 KIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGENI  408 (501)
T ss_dssp             EEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCEE
T ss_pred             EEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEE-CCEEE
Confidence            9998 43       345799999999999999999999887 88999999999999999999999999999996 99999


Q ss_pred             CcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 007257          479 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  555 (611)
Q Consensus       479 ~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  555 (611)
                      +|.+||++|.+||+|.+|+|++.++.   +.++++++...+.                  +.        ++|+++++ +
T Consensus       409 ~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~--------~~l~~~l~-~  461 (501)
T 3ipl_A          409 YPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SK--------AQLIAYLS-K  461 (501)
T ss_dssp             CHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------HHHHHHHH-H
T ss_pred             CHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CH--------HHHHHHHH-h
Confidence            99999999999999999999987655   3678888865432                  21        23444443 6


Q ss_pred             CCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          556 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       556 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      +||.|++|+.|+++++.      |+|++||++|++|++.+.++
T Consensus       462 ~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          462 HLAKYKVPKHFEKVDTL------PYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             HSCGGGSCSEEEECSSC------C-------------------
T ss_pred             hCccccCCCEEEEeccc------CCCCCCCEeHHHHhhccccc
Confidence            79999999999998765      99999999999999988664

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=9.4e-71  Score=590.05  Aligned_cols=465  Identities=25%  Similarity=0.293  Sum_probs=364.7

Q ss_pred             ccccCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +|+++|+ ++|+++.   +      +++||+||.++++++|.+|.     .|++|+++++|++++++++|||+++|++++
T Consensus        31 ~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~v   96 (505)
T 3nyq_A           31 APTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAV   96 (505)
T ss_dssp             CCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred             HHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEE
Confidence            5677776 9999986   3      79999999999999998874     388999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      |++|.++.+++.+++++++++++|++.....      .........+ ..+..                         ..
T Consensus        97 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~-------------------------~~  144 (505)
T 3nyq_A           97 PLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR-------------------------AR  144 (505)
T ss_dssp             EECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT-------------------------CC
T ss_pred             EcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc-------------------------cc
Confidence            9999999999999999999999999865210      0011111111 11100                         01


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHHHh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFF  239 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l  239 (611)
                      .........++++++++|||||||.||+|+++|+++.+.+......+     ++..+|++++.+|++|..|+.. .+.++
T Consensus       145 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~~~~~~~~l  219 (505)
T 3nyq_A          145 GAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHVHGLVLGILGPL  219 (505)
T ss_dssp             CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSHHHHTTTTHHHH
T ss_pred             cCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHHHHHHHHHHHHH
Confidence            11222345788999999999999999999999999999988877776     7889999999999999999875 67789


Q ss_pred             hcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 007257          240 RRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP  318 (611)
Q Consensus       240 ~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (611)
                      ..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+.....                                
T Consensus       220 ~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------------  266 (505)
T 3nyq_A          220 RRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------------------  266 (505)
T ss_dssp             HHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH--------------------------------
T ss_pred             hcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch--------------------------------
Confidence            99999999876 899999999 88999999999999988764321100                                


Q ss_pred             HHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeE
Q 007257          319 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL  398 (611)
Q Consensus       319 ~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v  398 (611)
                        ....+        +++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...+++|+|++++++
T Consensus       267 --~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~  335 (505)
T 3nyq_A          267 --LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRAGTVGVPLPGVEL  335 (505)
T ss_dssp             --HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCTTCCCEECTTCEE
T ss_pred             --hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCCCCcccCCCCCEE
Confidence              00011        3899999999999999999999989999999999999987766554433 344889999999999


Q ss_pred             EEeecCCCCCCCC-CCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEecc-CCeEEcCCc
Q 007257          399 RLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQG  475 (611)
Q Consensus       399 ~i~~~~~~~~~~~-~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~-~d~i~~~~G  475 (611)
                      +|+| +++...+. +.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++++||.+++.||. ||+|++ +|
T Consensus       336 ~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~G  413 (505)
T 3nyq_A          336 RLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-GG  413 (505)
T ss_dssp             EEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-TT
T ss_pred             EEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-CC
Confidence            9999 66554433 447899999999999999999999999999 6999999999999999999999998 599997 99


Q ss_pred             eecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257          476 EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  552 (611)
Q Consensus       476 ~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  552 (611)
                      ++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..       ..        +        .++|++++
T Consensus       414 ~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~~--------~--------~~~l~~~l  470 (505)
T 3nyq_A          414 YKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------PP--------A--------LGTLADHV  470 (505)
T ss_dssp             EEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------CC--------C--------HHHHHHHH
T ss_pred             EEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------CC--------C--------HHHHHHHH
Confidence            99999999999999999999999987654   48999999875320       00        1        12344444


Q ss_pred             HhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          553 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       553 ~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                      + ++||.|++|+.|+++++.      |+|++||++|++|++
T Consensus       471 ~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          471 A-ARLAPHKRPRVVRYLDAV------PRNDMGKIMKRALNR  504 (505)
T ss_dssp             H-HHTCGGGSCSEEEECSCC------CC-------------
T ss_pred             H-hhCCCCcCccEEEEECCC------CCCCCcCeeHHhhcc
Confidence            3 679999999999998665      999999999999986

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=8e-71  Score=636.02  Aligned_cols=510  Identities=25%  Similarity=0.310  Sum_probs=328.5

Q ss_pred             CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      ++|+++||++|+++.   ++  +  +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus        69 ~~a~~~pd~~Al~~~---~~--~--~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~v  141 (979)
T 3tsy_A           69 QNISEFATKPCLING---PT--G--HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATAT  141 (979)
T ss_dssp             TTGGGTTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHhCCCCeEEEEC---CC--C--cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEE
Confidence            468899999999975   21  1  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      |++|.++.+++.+++++++++++|++......+......   ....++.+++...      .........|.++......
T Consensus       142 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  212 (979)
T 3tsy_A          142 AANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---DGVVIVCIDDNES------VPIPEGCLRFTELTQSTTE  212 (979)
T ss_dssp             EECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---SCCEEEECCCCTT------SCCCTTEEEGGGTSSCCSG
T ss_pred             eeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---CCceEEEeCCccc------ccCCcccccHHHHhhcccc
Confidence            999999999999999999999999998765443221111   1123444443211      0111234455555433221


Q ss_pred             --cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHH
Q 007257          161 --NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  237 (611)
Q Consensus       161 --~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~  237 (611)
                        ......+..++++++|+|||||||.||+|+++|+++.+.+........ ....+..++++++.+|++|.+++.. ++.
T Consensus       213 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~  291 (979)
T 3tsy_A          213 ASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLC  291 (979)
T ss_dssp             GGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHH
T ss_pred             ccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHH
Confidence              122334567899999999999999999999999999988765433211 0125778999999999999999965 566


Q ss_pred             HhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          238 FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       238 ~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      ++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...                                  
T Consensus       292 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------------  337 (979)
T 3tsy_A          292 GLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE----------------------------------  337 (979)
T ss_dssp             HHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG----------------------------------
T ss_pred             HHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc----------------------------------
Confidence            7999999999876 99999999999999999999999988865211                                  


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeecc----CCCccccCccCC
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGP  391 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~----~~~~~~~~~~G~  391 (611)
                         ...        ..+++||.+++||+++++++.+++.+.+ ++++++.||+||++.+++.+.    .......+++|.
T Consensus       338 ---~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~  406 (979)
T 3tsy_A          338 ---TEK--------YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT  406 (979)
T ss_dssp             ---GGT--------SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCE
T ss_pred             ---ccC--------CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCc
Confidence               111        1235899999999999999999999988 899999999999998766542    112334588999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeE
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI  470 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i  470 (611)
                      |+++++++|+| ++. ..+++.|+.|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++++||++++.||.||+|
T Consensus       407 p~~~~~~~i~d-~~~-~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  484 (979)
T 3tsy_A          407 VVRNAEMKIVD-PDT-GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELI  484 (979)
T ss_dssp             ECSSCEEEEEC-TTS-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--
T ss_pred             ccCCcEEEEEe-CCC-CCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEE
Confidence            99999999998 443 3677788999999999999999999999999999 79999999999999999999999999999


Q ss_pred             EcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 007257          471 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  547 (611)
Q Consensus       471 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (611)
                      |+ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.++...                +        .++
T Consensus       485 k~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~----------------~--------~~~  539 (979)
T 3tsy_A          485 KY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL----------------S--------EDD  539 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCC----------------C--------HHH
Confidence            97 8999999999999999999999999997654   478889887654210                1        123


Q ss_pred             HHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 007257          548 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  606 (611)
Q Consensus       548 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~~~  606 (611)
                      |++++ +++||.|++|+.++++++.      |+|++||++|++|+++|++.+...|...
T Consensus       540 l~~~l-~~~l~~~~~p~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~~~~~~~~  591 (979)
T 3tsy_A          540 VKQFV-SKQVVFYKRINKVFFTESI------PKAPSGKILRKDLRAKLANGLGSGMASV  591 (979)
T ss_dssp             --------------------------------------------------------CCH
T ss_pred             HHHHH-HHhcccccCCeEEEEeCCc------CcCCCCCeeHHHHHHHHHhhcCCccccc
Confidence            44444 3789999999999988665      9999999999999999999888888654

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=8.2e-70  Score=591.83  Aligned_cols=509  Identities=17%  Similarity=0.139  Sum_probs=308.4

Q ss_pred             ccccCCCCCceeeeccccC----CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 007257            2 SVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL   77 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~----~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~   77 (611)
                      +|+++||++|+++.   ++    ..+..+++||+||.++++++|++|.+.|+ +||+|+++++|++++++++|||+++|+
T Consensus        29 ~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Ga  104 (562)
T 3ite_A           29 WAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGN  104 (562)
T ss_dssp             HHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence            57899999999986   32    22334799999999999999999999999 799999999999999999999999999


Q ss_pred             EEeeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257           78 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  157 (611)
Q Consensus        78 ~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (611)
                      +++|+++.++.+++.+++++++++++|+++.......      ......++.....                .+.+....
T Consensus       105 v~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~~~~  162 (562)
T 3ite_A          105 TYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKNQ----------------SFIENLST  162 (562)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTCH----------------HHHHHHHH
T ss_pred             EEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccch----------------hhhhhccc
Confidence            9999999999999999999999999999876543221      1111222221111                11122211


Q ss_pred             ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccc---cccCCCCCCcEEEEecchhhHHHHHH
Q 007257          158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLSFLPLAHILDRVI  234 (611)
Q Consensus       158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~  234 (611)
                      . ..........++++++++|||||||.||+|+++|+++.+.+..+...+.   .....+...+++++..|+.|..++..
T Consensus       163 ~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (562)
T 3ite_A          163 Q-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE  241 (562)
T ss_dssp             S-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH
T ss_pred             c-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH
Confidence            1 1112223456788999999999999999999999999887766543321   01124677899999999999888887


Q ss_pred             HHHHhhcCceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 007257          235 EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  312 (611)
Q Consensus       235 ~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (611)
                      .+.++..|+++++.+.  .+..+.+.++++++|+++++|+++..+...                                
T Consensus       242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--------------------------------  289 (562)
T 3ite_A          242 MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--------------------------------  289 (562)
T ss_dssp             HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------------------
T ss_pred             HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------------------
Confidence            8888999999988765  467888999999999999999987654210                                


Q ss_pred             CCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCC
Q 007257          313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV  392 (611)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~  392 (611)
                                       ...+++||.+++||+++++++.+.|.+.+++++++.||+||++..++..........+++|.|
T Consensus       290 -----------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p  352 (562)
T 3ite_A          290 -----------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHP  352 (562)
T ss_dssp             -----------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEE
T ss_pred             -----------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCcccccc
Confidence                             011258999999999999999999998889999999999999987776655444455789999


Q ss_pred             ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCC--ccccCceEEEccCCeEEEEeccCCeE
Q 007257          393 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNGVVKIIDRKKNLI  470 (611)
Q Consensus       393 ~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGD~~~~~~dG~l~~~GR~~d~i  470 (611)
                      ++++++++++ +++ ..+++.|+.|||+|+|++++.||+++++.+...+.+|  ||+|||+|++|+||++++.||.||+|
T Consensus       353 ~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~I  430 (562)
T 3ite_A          353 LGDSVAHVLA-PGS-NEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQV  430 (562)
T ss_dssp             CTTCEEEEEC-TTS-SCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC----
T ss_pred             CCCCeEEEEe-CCC-CCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEE
Confidence            9999999998 433 3567788999999999999999999999988777777  99999999999999999999999999


Q ss_pred             EcCCceecCcHHHHHHHhcC-cCcceEEEEecCCCC---eEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 007257          471 KISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  546 (611)
Q Consensus       471 ~~~~G~~v~~~~iE~~l~~~-p~V~~~~v~~~~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (611)
                      |+ +|++|+|.+||++|.+| |.+.+++|++.+++.   ..++.++...+...        ..+...   ..+..+.+.+
T Consensus       431 k~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~---~~~~~~~~~~  498 (562)
T 3ite_A          431 KV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAV--------RGELRW---INENYKEINN  498 (562)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccc--------cccccc---cccchhhHHH
Confidence            97 99999999999999998 788999988866542   33333333322110        000000   0011123345


Q ss_pred             HHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccc-cccccchHHHHHHHHH-HHHHHHhhhc
Q 007257          547 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQV-EIDQLYEKLA  607 (611)
Q Consensus       547 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t-~~GKv~R~~l~~~~~~-~~~~~y~~~~  607 (611)
                      +|+++++ ++||.|++|+.|+++++.      |+| ++||++|++|+++|++ ....++...+
T Consensus       499 ~l~~~~~-~~L~~y~~P~~i~~v~~l------P~t~~~GKi~r~~L~~~~~~~~~~~~~~~~s  554 (562)
T 3ite_A          499 SLRQACE-QTLPAYMVPDFIIPISFI------PLRDTSAKTDAKALEHMFHTLSLGELFGESS  554 (562)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             HHHHHHH-hhCCcccCCcEEEEeccC------CCCCCCCcchHHHHHHHHhccCHHHHhccCc
Confidence            6777775 789999999999998765      988 8999999999999976 3455555443

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.7e-68  Score=584.03  Aligned_cols=492  Identities=17%  Similarity=0.191  Sum_probs=383.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +  .+..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        20 ~a~~~p~~~a~~~~---~--~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp   94 (590)
T 3kxw_A           20 RALHSPNKKSCTFL---N--KELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVP   94 (590)
T ss_dssp             HHHHCTTSEEEEEE---E--TTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCCCeEEEEE---c--CCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEE
Confidence            57889999999987   4  223489999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC---ChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcc
Q 007257           82 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG  158 (611)
Q Consensus        82 l~~~~---~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (611)
                      ++|.+   +.+++.++++.+++++++++.+....+........+....+..+.                   .+.+.. .
T Consensus        95 l~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~  154 (590)
T 3kxw_A           95 IYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA-------------------LESIEL-N  154 (590)
T ss_dssp             ECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE-------------------GGGCCG-G
T ss_pred             ecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee-------------------chhccc-c
Confidence            99988   457899999999999999998876655432211111111111111                   111100 0


Q ss_pred             cccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HHH
Q 007257          159 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  237 (611)
Q Consensus       159 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~  237 (611)
                      ...........++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++.+|++|.+|+.. ++.
T Consensus       155 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~g~~~~~~~  229 (590)
T 3kxw_A          155 RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPHHDMGLIGCILT  229 (590)
T ss_dssp             GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred             ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCCcchhhHHHHHH
Confidence            0112223456789999999999999999999999999999998877766     7889999999999999999987 677


Q ss_pred             HhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 007257          238 FFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  312 (611)
Q Consensus       238 ~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (611)
                      +++.|+++++.+.     ++..+++.++++++|++.++|.++..+.+.+...                            
T Consensus       230 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------  281 (590)
T 3kxw_A          230 PIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE----------------------------  281 (590)
T ss_dssp             HHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------------------
T ss_pred             HHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------------------
Confidence            8999999999864     7899999999999999999999998876532111                            


Q ss_pred             CCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC------CceeeccccCCCCCceeeccCC-----
Q 007257          313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPTTVCFPD-----  381 (611)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~g~~~~~~~~~-----  381 (611)
                            ...        ...+++||.+++||+++++++.+.|.+.++      .++++.||+||++++++.....     
T Consensus       282 ------~~~--------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~  347 (590)
T 3kxw_A          282 ------KKE--------GLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKT  347 (590)
T ss_dssp             ------GGT--------TCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCE
T ss_pred             ------hcc--------CCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCcee
Confidence                  001        112359999999999999999999998873      4799999999999887754321     


Q ss_pred             ---------------------CccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhh
Q 007257          382 ---------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES  440 (611)
Q Consensus       382 ---------------------~~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~  440 (611)
                                           ......++|.|+++  ++|+| ++ +..+++.|+.|||+|+||+++.||+++++.|.+.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~  423 (590)
T 3kxw_A          348 LTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PD-TLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHA  423 (590)
T ss_dssp             EEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TT-TCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHH
T ss_pred             eeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CC-CCcCCCCCCEEEEEEeCCcccccccCChhHHHHH
Confidence                                 11234678999988  78887 44 3467788899999999999999999999999999


Q ss_pred             ccC-------C--ccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHH-hcCcCcc--eEEEEecCCC--Ce
Q 007257          441 IID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DIWVYGDSLK--SM  506 (611)
Q Consensus       441 ~~~-------g--~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~~v~~~~~~--~~  506 (611)
                      |.+       |  ||+|||+|++| ||+|++.||.||+||+ +|++|+|.+||++| ..+|+|.  +|+|++.++.  +.
T Consensus       424 f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~  501 (590)
T 3kxw_A          424 FAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYK  501 (590)
T ss_dssp             HCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEE
T ss_pred             HhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCce
Confidence            943       5  99999999999 9999999999999998 99999999999999 8899998  7888886543  47


Q ss_pred             EEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcceee-eEEEecCCCCCCCCccccccc
Q 007257          507 LVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLK  585 (611)
Q Consensus       507 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GK  585 (611)
                      +++++++.++....              .+..++.+.+.+.+.+.        ++.|. .+.+++    ++.+|+|++||
T Consensus       502 ~~~~v~~~~~~~~~--------------~~~~~l~~~l~~~l~~~--------~~~p~~~i~~v~----~~~lP~t~sGK  555 (590)
T 3kxw_A          502 LTVMCEVKNRFMDD--------------VAQDNLFNEIFELVYEN--------HQLEVHTIVLIP----LKAMPHTTSGK  555 (590)
T ss_dssp             EEEEEEESCTTCCH--------------HHHHHHHHHHHHHHHHH--------HSCCCCEEEEEE----TTCSCCCSCHH
T ss_pred             EEEEEEeccccccc--------------hhHHHHHHHHHHHHHHH--------cCCceeEEEEEC----CCccCcCCCcH
Confidence            88888877542000              01223333333333221        33443 455553    24469999999


Q ss_pred             cchHHHHHHHHH
Q 007257          586 KKRNKLLIYYQV  597 (611)
Q Consensus       586 v~R~~l~~~~~~  597 (611)
                      ++|++|+++|.+
T Consensus       556 i~R~~L~~~~~~  567 (590)
T 3kxw_A          556 IRRNFCRKHLLD  567 (590)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999999865

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=9.1e-67  Score=616.84  Aligned_cols=467  Identities=20%  Similarity=0.238  Sum_probs=386.7

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +      +++||+||.++++++|++|++.|+++|++|+++++|++++++++|||+++|++++|
T Consensus       473 ~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vp  543 (1304)
T 2vsq_A          473 AVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLP  543 (1304)
T ss_dssp             HHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEE
Confidence            57889999999986   3      69999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++++++++++++++.........     .+.....+.+++...                  .   ....
T Consensus       544 ldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~------------------~---~~~~  597 (1304)
T 2vsq_A          544 VDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR------------------F---EEQA  597 (1304)
T ss_dssp             CCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG------------------G---GSCS
T ss_pred             ECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc------------------c---cccc
Confidence            9999999999999999999999998765433211     111223333332110                  0   0011


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||||+++|+++.+.. .....+     ++..++++++..|++|..+...++.++..
T Consensus       598 ~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~~~~~~~~l~~  671 (1304)
T 2vsq_A          598 SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAFTFDFYASMLN  671 (1304)
T ss_dssp             SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHHHHHHHHHHHc
Confidence            112234578999999999999999999999999998763 333333     67889999999999999888778889999


Q ss_pred             CceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 007257          242 GASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS  317 (611)
Q Consensus       242 G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (611)
                      |+++++.+.    ++..+++.++++++|+++++|+++..+.+.....                                 
T Consensus       672 G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~---------------------------------  718 (1304)
T 2vsq_A          672 AARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW---------------------------------  718 (1304)
T ss_dssp             TCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH---------------------------------
T ss_pred             CCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc---------------------------------
Confidence            999999874    8899999999999999999999999886421000                                 


Q ss_pred             hHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHc-CCceeeccccCCCCCceeeccCCC---ccccCccCCCc
Q 007257          318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MCMVGTAGPVS  393 (611)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~G~~~  393 (611)
                             +        ++||.+++||++++++..+.|.+.+ +..++|.||+||++.+++......   .....++|+|+
T Consensus       719 -------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~  783 (1304)
T 2vsq_A          719 -------M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPI  783 (1304)
T ss_dssp             -------H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEEC
T ss_pred             -------C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceee
Confidence                   0        2899999999999999999988877 478999999999998776544321   22336799999


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------CCccccCceEEEccCCeEEEEecc
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK  466 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~dG~l~~~GR~  466 (611)
                      ++++++|+| +++  .+++.|+.|||+|+|++++.||+++++.|++.|.       ++||+|||+|++++||.++++||.
T Consensus       784 ~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~  860 (1304)
T 2vsq_A          784 SNASVYILN-EQS--QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRI  860 (1304)
T ss_dssp             TTEEEEEEC-TTS--CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEG
T ss_pred             CCCEEEEEC-CCc--CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCC
Confidence            999999998 554  5677888999999999999999999999999992       349999999999999999999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHH
Q 007257          467 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  543 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (611)
                      ||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.   ..++|++++....                  +.      
T Consensus       861 d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~------------------~~------  915 (1304)
T 2vsq_A          861 DDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------------------SA------  915 (1304)
T ss_dssp             GGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS------------------CH------
T ss_pred             CCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC------------------CH------
Confidence            999998 9999999999999999999999999986644   4899999876521                  11      


Q ss_pred             HHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHH
Q 007257          544 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  594 (611)
Q Consensus       544 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  594 (611)
                        ++|+++++ +.||.|++|..++++++.      |+|++||++|++|.+.
T Consensus       916 --~~l~~~l~-~~Lp~ymvP~~~~~l~~l------P~t~~GKidR~~L~~~  957 (1304)
T 2vsq_A          916 --EDVKAHLK-KQLPAYMVPQTFTFLDEL------PLTTNGKVNKRLLPKP  957 (1304)
T ss_dssp             --HHHHHHHH-HHSCGGGSCSEEEEESCC------CCCSSCSSCCSCCCCC
T ss_pred             --HHHHHHHH-HhChHhhhccEEEEeccc------CCCCCcccCHhhcCCc
Confidence              23444443 679999999999999765      9999999999988653

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=3.2e-56  Score=476.01  Aligned_cols=390  Identities=17%  Similarity=0.208  Sum_probs=303.6

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++....++.++.++++||+||.++++++|++|++.|+ +||+|+++++|++++++++|||+++|++++|
T Consensus        33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp  111 (480)
T 3t5a_A           33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP  111 (480)
T ss_dssp             HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence            578899999999871101334556899999999999999999999996 9999999999999999999999999999999


Q ss_pred             CCC---CCChhHHHHHHhhcCccEEEEcchhHHHHhcccccccc-CccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhc
Q 007257           82 LYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL  157 (611)
Q Consensus        82 l~~---~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (611)
                      +++   .++.+++.++|+.++++++|++......+......... ....++..+...                     . 
T Consensus       112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-  169 (480)
T 3t5a_A          112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD---------------------L-  169 (480)
T ss_dssp             ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC---------------------T-
T ss_pred             eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc---------------------c-
Confidence            999   78899999999999999999998876655433221110 111222222111                     0 


Q ss_pred             ccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCC------CcEEEEecchhhHHH
Q 007257          158 GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVYLSFLPLAHILD  231 (611)
Q Consensus       158 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~g  231 (611)
                      ............++++++|+|||||||.||||++||+++.+.+......+     .+..      ++++++.+|++|.+|
T Consensus       170 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l~~~pl~h~~g  244 (480)
T 3t5a_A          170 DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALVSWLPFYHDMG  244 (480)
T ss_dssp             TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEEECCCTTSTTH
T ss_pred             ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEEEeCCCcCccH
Confidence            00111223345788999999999999999999999999998887766655     4555      899999999999999


Q ss_pred             HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  305 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (611)
                      +.. ++.+++.|+++++.+.     ++..+++.++++++| +.++|+++..++.....                      
T Consensus       245 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~----------------------  301 (480)
T 3t5a_A          245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT----------------------  301 (480)
T ss_dssp             HHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC----------------------
Confidence            765 6778999999999863     899999999999999 88999988777542110                      


Q ss_pred             HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC------CceeeccccCCCCCceeecc
Q 007257          306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPTTVCF  379 (611)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~g~~~~~~~  379 (611)
                                 .+..        ....+++||.+++||+++++++.+.|.+.++      +.+++.||+||++..++...
T Consensus       302 -----------~~~~--------~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  362 (480)
T 3t5a_A          302 -----------DDDM--------AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSK  362 (480)
T ss_dssp             -----------TGGG--------TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECC
T ss_pred             -----------cccc--------cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecc
Confidence                       0000        1122369999999999999999999999874      46999999999998877655


Q ss_pred             CCC------------------------ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChH
Q 007257          380 PDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD  435 (611)
Q Consensus       380 ~~~------------------------~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~  435 (611)
                      ...                        .....++|+|++ ++++|+| +++ ..+++.|+.|||+|+||+++.||+++++
T Consensus       363 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~pe  439 (480)
T 3t5a_A          363 PGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECPDGTVGEIWVHGDNVANGYWQKPD  439 (480)
T ss_dssp             TTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECCTTBCEEEEEESTTSCCCBTTBHH
T ss_pred             cCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCCCCCEEEEEEeCCccccccccCcc
Confidence            432                        123468999999 9999999 443 3567788999999999999999999999


Q ss_pred             hhhhhc------------cCCccccCceEEEccCCeEEEEec
Q 007257          436 LTRESI------------IDGWFHTGDIGQILPNGVVKIIDR  465 (611)
Q Consensus       436 ~~~~~~------------~~g~~~TGD~~~~~~dG~l~~~GR  465 (611)
                      .|++.|            .+|||+|||+|+++ ||+|++.||
T Consensus       440 ~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          440 ESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             HHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             hhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            999998            35699999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=1.2e-50  Score=413.57  Aligned_cols=313  Identities=17%  Similarity=0.124  Sum_probs=256.9

Q ss_pred             CCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEec
Q 007257          170 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH  249 (611)
Q Consensus       170 ~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~  249 (611)
                      .|++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++.+|++|.+|+..++.++..|+++++.+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            46789999999999999999999999999988877776     7899999999999999999988888899999998886


Q ss_pred             CChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhHHHH
Q 007257          250 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  329 (611)
Q Consensus       250 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (611)
                      . ....++.++++++|+++++|+++..+++....                                      .       
T Consensus       111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~-------  144 (358)
T 4gs5_A          111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------S-------  144 (358)
T ss_dssp             C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------G-------
T ss_pred             c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------c-------
Confidence            4 23346778999999999999999988652110                                      0       


Q ss_pred             HHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccCeeEEEeecCCCCCC
Q 007257          330 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS  409 (611)
Q Consensus       330 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~~~v~i~~~~~~~~~  409 (611)
                       ..+++||.+++||+++++++.+++.+ +++++++.||+||+++.++......... +++|.+.|++++.+.+       
T Consensus       145 -~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          145 -GQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             -GGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             -ccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence             01248999999999999999999987 5999999999999998877766554333 7888899998887655       


Q ss_pred             CCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCCceecCcHHHHHHH--
Q 007257          410 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY--  487 (611)
Q Consensus       410 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l--  487 (611)
                            .|||+++|+..               .+|||+|||+|++|+|| ++++||.||+||+ +|++|+|.+||++|  
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~  271 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA  271 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence                  59999998643               27899999999999888 6677999999997 99999999999877  


Q ss_pred             -hcCcCcceEEEE-ecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcce
Q 007257          488 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH  562 (611)
Q Consensus       488 -~~~p~V~~~~v~-~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~  562 (611)
                       .+||+|.+|+|+ +.++.   +.++|+|+.....                         ...++|+++++ ++||.|++
T Consensus       272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-------------------------~~~~~l~~~l~-~~L~~~~~  325 (358)
T 4gs5_A          272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-------------------------ALTERLTAEIR-SRVSTYEN  325 (358)
T ss_dssp             HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-------------------------HHHHHHHHHHH-HHSCGGGS
T ss_pred             hccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-------------------------cCHHHHHHHHH-hhCCCCCC
Confidence             468999998887 44433   3788888766532                         11234555554 67999999


Q ss_pred             eeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          563 IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       563 p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      |+.|+++++.      |+|++||++|++|++++++.
T Consensus       326 P~~i~~v~~l------P~t~~GKi~R~~L~~~l~e~  355 (358)
T 4gs5_A          326 PKHIYFAKAF------AKTQTDKIDKRATFQKLSDS  355 (358)
T ss_dssp             CSCEEEESSC------CBCTTSCBCHHHHHHHTC--
T ss_pred             ceEEEEECCc------CCCCCCChhHHHHHHHhhhh
Confidence            9999999765      99999999999999988664

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=3.5e-45  Score=385.16  Aligned_cols=333  Identities=16%  Similarity=0.167  Sum_probs=248.8

Q ss_pred             CCCC-CCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHH-HHHHHhhcCce
Q 007257          167 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS  244 (611)
Q Consensus       167 ~~~~-~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~  244 (611)
                      ...+ +++++++|||||||.||+|.++|+++......+...+..  .++..+|++++..|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3455 899999999999999999999999998776655332211  2678899999999987655554 46667889999


Q ss_pred             EEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 007257          245 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  323 (611)
Q Consensus       245 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (611)
                      +++.+. ++..+++.|+++++|+++++|+++..|++........                                    
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------------------  202 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------------------------  202 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC------------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC------------------------------------
Confidence            988865 9999999999999999999999999987654322100                                    


Q ss_pred             hhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCc-eeeccCCCccccCccCCCccCeeEEEee
Q 007257          324 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE  402 (611)
Q Consensus       324 ~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~  402 (611)
                             ..++++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +......   . ...+.+.+++.++++|
T Consensus       203 -------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d  271 (436)
T 3qov_A          203 -------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID  271 (436)
T ss_dssp             -------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred             -------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence                   00258999999999999999999999999999999999999654 3332221   1 2356677899999998


Q ss_pred             cCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccCC------e---EEEEeccCCeEEcC
Q 007257          403 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS  473 (611)
Q Consensus       403 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG------~---l~~~GR~~d~i~~~  473 (611)
                       +++ ..+++.|+.|||+|+|.            +...|.++||+|||+|+++++|      +   +++.||.||+|++ 
T Consensus       272 -~~~-g~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-  336 (436)
T 3qov_A          272 -PET-GEPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-  336 (436)
T ss_dssp             -TTT-CSBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred             -CCC-CCCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence             333 36777889999999984            2344568999999999999998      5   6999999999998 


Q ss_pred             CceecCcHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 007257          474 QGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  550 (611)
Q Consensus       474 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  550 (611)
                      +|++|+|.+||++|.+||+|.+++|++.++   .+.++|+|+++ +..        . .+..   +..++.+.+.+.|.+
T Consensus       337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~--------~-~~~~---~~~~l~~~l~~~l~~  403 (436)
T 3qov_A          337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS--------T-DNYI---ELEKIRRDIIRQLKD  403 (436)
T ss_dssp             TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC--------C-CCHH---HHHHHHHHHHHHHHH
T ss_pred             CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc--------c-cchh---hHHHHHHHHHHHHHH
Confidence            899999999999999999999999998664   35899999988 420        0 0000   112344444444433


Q ss_pred             HHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchH
Q 007257          551 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  589 (611)
Q Consensus       551 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~  589 (611)
                      ++        ..|..+.+++.    +.+|+|+ ||++|.
T Consensus       404 ~~--------~~p~~i~~v~~----~~lP~t~-GKi~R~  429 (436)
T 3qov_A          404 EI--------LVTPKVKLVKK----GSLPQSE-GKAVRV  429 (436)
T ss_dssp             HH--------SSCCEEEEECT----TCCC--------CE
T ss_pred             hc--------CCceEEEEeCC----CcccCcC-CcceEE
Confidence            32        45667888861    3569999 999985

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=2.2e-44  Score=379.84  Aligned_cols=338  Identities=17%  Similarity=0.128  Sum_probs=256.0

Q ss_pred             CCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecch-hhHHHHHHHHHHhhcCceE
Q 007257          167 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  245 (611)
Q Consensus       167 ~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~~  245 (611)
                      ...++++++++|||||||.||+|.++|+++......+...+..  .++..+|++++..|+ .|..++...+.++..|+++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~  165 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV  165 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence            4567899999999999999999999999988766544332111  267889999999998 4667766677788899999


Q ss_pred             EEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHh
Q 007257          246 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  324 (611)
Q Consensus       246 ~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (611)
                      ++.+. ++..+++.|+++++|+++++|+++..|++.........                                    
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  209 (443)
T 2y4o_A          166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------  209 (443)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            88776 99999999999999999999999999876433211000                                    


Q ss_pred             hHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCc-eeeccCCCccccCccCCCccCeeEEEeec
Q 007257          325 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  403 (611)
Q Consensus       325 ~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~~  403 (611)
                             .++++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +........   ...+.+.+++.++++| 
T Consensus       210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  278 (443)
T 2y4o_A          210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID-  278 (443)
T ss_dssp             -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred             -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence                   0148999999999999999999999889999999999998543 333222111   1244566889999998 


Q ss_pred             CCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccC-CeE-----EEEeccCCeEEcCCcee
Q 007257          404 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY  477 (611)
Q Consensus       404 ~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d-G~l-----~~~GR~~d~i~~~~G~~  477 (611)
                      +++ ..+++.|+.|||+|+|.            +++.|.++||+|||+|+++++ |++     ++.||.||+|++ +|++
T Consensus       279 ~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~  344 (443)
T 2y4o_A          279 PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN  344 (443)
T ss_dssp             TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred             CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence            443 36777889999999983            234456899999999999999 986     899999999997 8999


Q ss_pred             cCcHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecCh--HHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 007257          478 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  552 (611)
Q Consensus       478 v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~vv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  552 (611)
                      |+|.+||++|.+||+|.+++|++.++   .+.++|+|++.+  +..          .+   ..+..++.+.+.+      
T Consensus       345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~----------~~---~~~~~~l~~~l~~------  405 (443)
T 2y4o_A          345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS----------VT---DGERAALARELQH------  405 (443)
T ss_dssp             ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT----------CC---HHHHHHHHHHHHH------
T ss_pred             ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc----------ch---hhHHHHHHHHHHH------
Confidence            99999999999999999999887532   358899999876  210          00   0011223333332      


Q ss_pred             HhCCCCCc-ceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          553 ERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       553 ~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                         .|+.+ .+|..|.+++    ++++|+|++||++|...++
T Consensus       406 ---~l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~r  440 (443)
T 2y4o_A          406 ---RIKTMVGVSSGVTVLA----AGGIPATATGKARRVIDRR  440 (443)
T ss_dssp             ---HHHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEECC
T ss_pred             ---HHHHHhCCceEEEEeC----CCcccCccCCcceEEEecc
Confidence               23333 3677788774    2456999999999975443

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=8.4e-44  Score=374.71  Aligned_cols=335  Identities=18%  Similarity=0.167  Sum_probs=255.3

Q ss_pred             CCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecch-hhHHHHHHHHHHhhcCce
Q 007257          166 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGAS  244 (611)
Q Consensus       166 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~  244 (611)
                      ....++++++++|||||||.||+|+++|.++......+...+..  .++..+|++++..|+ .|..++...+.++..|++
T Consensus        85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~  162 (437)
T 2y27_A           85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT  162 (437)
T ss_dssp             CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred             ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence            34567899999999999999999999999988766544332111  267889999999998 677777777778999999


Q ss_pred             EEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 007257          245 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  323 (611)
Q Consensus       245 ~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (611)
                      +++.+. ++..+++.|+++++|+++++|+++..|++.........                                   
T Consensus       163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------------------------  207 (437)
T 2y27_A          163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP-----------------------------------  207 (437)
T ss_dssp             EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            988776 99999999999999999999999999876433211000                                   


Q ss_pred             hhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCc-eeeccCCCccccCccCCCccCeeEEEee
Q 007257          324 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE  402 (611)
Q Consensus       324 ~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~-~~~~~~~~~~~~~~~G~~~~~~~v~i~~  402 (611)
                              .++++|.+++||+++++++.+.+.+.+|+++++.||+||+++. +........   ...+.+.+++.++++|
T Consensus       208 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d  276 (437)
T 2y27_A          208 --------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID  276 (437)
T ss_dssp             --------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC
T ss_pred             --------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc
Confidence                    0148999999999999999999998889999999999998543 333222111   1245567899999998


Q ss_pred             cCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc-CCeE-----EEEeccCCeEEcCCce
Q 007257          403 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGE  476 (611)
Q Consensus       403 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~-dG~l-----~~~GR~~d~i~~~~G~  476 (611)
                       +++ ..+++.|+.|||+|+|.            +++.|.++||+|||+|++++ +|++     ++.||.||+|++ +|+
T Consensus       277 -~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~  341 (437)
T 2y27_A          277 -PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGV  341 (437)
T ss_dssp             -TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTE
T ss_pred             -CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCe
Confidence             443 46777889999999983            33446689999999999999 6985     899999999997 999


Q ss_pred             ecCcHHHHHHHhcCcCcceEEEEecCC---CCeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHH
Q 007257          477 YVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE  553 (611)
Q Consensus       477 ~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  553 (611)
                      +|+|.+||++|.+||+|.+++|++.++   .+.++|+|+++++..          .+   ..+..++.+.+.+       
T Consensus       342 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~----------~~---~~~~~~l~~~l~~-------  401 (437)
T 2y27_A          342 NVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA----------PD---TAAIQVAKQALAY-------  401 (437)
T ss_dssp             EECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT----------TC---HHHHHHHHHHHHH-------
T ss_pred             EECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc----------ch---hhhHHHHHHHHHH-------
Confidence            999999999999999999988887432   358999999876420          00   0011223333332       


Q ss_pred             hCCCCCc-ceeeeEEEecCCCCCCCCccccccccchHH
Q 007257          554 RNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK  590 (611)
Q Consensus       554 ~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~  590 (611)
                        .|+.+ .+|..|.+++    ++.+|+|+ ||++|..
T Consensus       402 --~l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          402 --DIKSLIGVTAVINVLP----VNGIERSV-GKARRVV  432 (437)
T ss_dssp             --HHHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred             --HHHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence              34444 3677788774    24569999 9999863

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=2.4e-28  Score=250.89  Aligned_cols=239  Identities=18%  Similarity=0.168  Sum_probs=173.7

Q ss_pred             CCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecch-hhHHHHHHHHHHhhcCceEE
Q 007257          168 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG  246 (611)
Q Consensus       168 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~~~  246 (611)
                      ..++++++++|||||||.||+|.++|+++...+......+..  .++..+|++++..|+ +|..++...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            467889999999999999999999999999888754332211  267889999999999 99999888777788899444


Q ss_pred             EecCChH-----------------------HHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007257          247 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  303 (611)
Q Consensus       247 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (611)
                      ....+|.                       .+++.++++++|+++++|+++..|++......                  
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~------------------  227 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVL------------------  227 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHH------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhc------------------
Confidence            4444666                       78889999999999999999999876421110                  


Q ss_pred             HHHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHH-HHc-CCceeeccccCCCCCceeeccCC
Q 007257          304 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD  381 (611)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~yG~tE~g~~~~~~~~~  381 (611)
                                         .++        +++|.+++||+++++++.+.+. +.| ++++++.||+||+++++..+.. 
T Consensus       228 -------------------~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          228 -------------------QMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             -------------------HHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             -------------------ccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                               111        3899999999999999999999 898 8999999999999877654321 


Q ss_pred             CccccCccCCC------ccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEc
Q 007257          382 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL  455 (611)
Q Consensus       382 ~~~~~~~~G~~------~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~  455 (611)
                           .++|.+      .++++++|+| +++ ..+++.|+.|||+|++....            .+ --.|+|||++.+.
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~-g~~vp~G~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~~  339 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVD-SIT-AQTVEYGERGNVIVTHLSPW------------AF-YPRVAERDTAIRL  339 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEEC-TTT-CSBCCTTCEEEEEEEEEETT------------EE-EEEEEEEEEEEEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEEC-CCC-CcCCCCCCceEEEEEEcCcc------------cc-cccccCCceEEEe
Confidence                 147888      9999999998 433 36778899999999983211            11 1238899998875


Q ss_pred             cC--C-------eEEEEeccCCeEEcCCc
Q 007257          456 PN--G-------VVKIIDRKKNLIKISQG  475 (611)
Q Consensus       456 ~d--G-------~l~~~GR~~d~i~~~~G  475 (611)
                      +.  |       .+..++|.++..+| .|
T Consensus       340 ~~~~g~~~d~~~~v~~~~~~~~~~~i-~g  367 (369)
T 3hgu_A          340 PGVSGFAGDRLADIEPLKISEGRKVI-EG  367 (369)
T ss_dssp             CCSTTCSSCEEEEEEECC-----------
T ss_pred             cCCCCCcCcccccceeccccCCCcee-ee
Confidence            43  2       24556777777766 44

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.33  E-value=2.6e-12  Score=105.90  Aligned_cols=98  Identities=15%  Similarity=0.074  Sum_probs=64.3

Q ss_pred             eccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHH
Q 007257          464 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  540 (611)
Q Consensus       464 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (611)
                      .|.||||++ +|.||+|.+||++|.+||+|.++++++.++.   +.+.++|+..++..          .+..   ...++
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~----------~~~~---~~~~l   66 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT----------DDYG---RLQAL   66 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC----------CCHH---HHHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc----------cccc---hhhhh
Confidence            489999998 9999999999999999999999998886544   37888888776431          0000   11223


Q ss_pred             HHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccch
Q 007257          541 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  588 (611)
Q Consensus       541 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R  588 (611)
                      .+.+.+.+.+.+   .+     +..+.+++    ++++|+| +||++|
T Consensus        67 ~~~i~~~l~~~~---gv-----~~~v~~v~----~~~lPrt-sGKi~R  101 (109)
T 3lax_A           67 TREITRQLKDEI---LV-----TPRVKLVP----KGALPKS-EGKAVR  101 (109)
T ss_dssp             HHHHHHHHHHHH---SS-----CCEEEEEC----TTCSCCC----CCC
T ss_pred             HHHHHHHHHHHh---CC-----ccceEEEc----CCeecCC-CCCcch
Confidence            344444443332   12     33467764    3677998 799987

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.87  E-value=1.3e-08  Score=107.18  Aligned_cols=137  Identities=19%  Similarity=0.191  Sum_probs=84.6

Q ss_pred             HcCCc---eeEEEEecCCCCHHHHHHHHHHc-CCcee-eccccCCCCCceeeccCCCccccCccCC-CccCe-eEEEeec
Q 007257          331 RLGGR---LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEV  403 (611)
Q Consensus       331 ~~~~~---l~~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~g~~~~~~~~~~~~~~~~~G~-~~~~~-~v~i~~~  403 (611)
                      ..-|+   +..++.||.   ..-...++..+ +.+++ ..|++||+  .+..+.... ..+...+. .+++. =.++++.
T Consensus       294 ~lWPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg--~~gi~~~p~-~~~~~~~~~L~~~~~ffEFip~  367 (581)
T 4eql_A          294 RLWPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET--TFGINLDPL-CKPEDVSYTFMPNMSYFEFIPM  367 (581)
T ss_dssp             HHSTTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC--EEEECSCTT-SCGGGCCEEECTTSSEEEEEEC
T ss_pred             HhCCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc--eeeeccCCC-CCcccCceeecCCcEEEEEEec
Confidence            34467   555556663   33334444444 67777 89999994  222222111 11111221 22332 2344442


Q ss_pred             CCCC------CCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc----CCeEEEEeccCCeEEcC
Q 007257          404 PEMG------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKIS  473 (611)
Q Consensus       404 ~~~~------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----dG~l~~~GR~~d~i~~~  473 (611)
                      ++..      ...+..|+.+||+|+..+   |.|.             |++||+.+++.    ..++.+.||.++++++ 
T Consensus       368 ~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-  430 (581)
T 4eql_A          368 DGGDKNDVVDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-  430 (581)
T ss_dssp             STTCCSSCEEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-
T ss_pred             cccCCCcEeCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-
Confidence            2211      122346788999998853   4443             99999999976    3579999999999997 


Q ss_pred             CceecCcHHHHHHHhcC
Q 007257          474 QGEYVALEYLENVYCVA  490 (611)
Q Consensus       474 ~G~~v~~~~iE~~l~~~  490 (611)
                      .|++++..+||++|.+.
T Consensus       431 ~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          431 DSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             SSCCEEHHHHHHHHHHC
T ss_pred             eeeECCHHHHHHHHHHH
Confidence            89999999999999743

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.76  E-value=1.3e-07  Score=99.34  Aligned_cols=163  Identities=19%  Similarity=0.133  Sum_probs=94.4

Q ss_pred             HHcCCceeEE--EEecCCCCHHHHHHHHHHc-CCcee-eccccCCCCCceeeccCCCccccCccC-CCccCe-eEEEeec
Q 007257          330 ARLGGRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEV  403 (611)
Q Consensus       330 ~~~~~~l~~i--~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~  403 (611)
                      ...-|++++|  +.+|. + ..-...++..+ +.+++ ..|++||+ .+.....+..  .++..+ ..+|+. =.++++.
T Consensus       298 ~~lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~  372 (581)
T 4epl_A          298 PALFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL--SPEEATFAVIPNLGYFEFLPV  372 (581)
T ss_dssp             HHHCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTS--CTTTCCEEECTTSCEEEEEEC
T ss_pred             HHhCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCC--CccccceeecCCcEEEEEEec
Confidence            3455788633  33442 2 23334455444 67777 89999995 2222211211  111112 122332 1233332


Q ss_pred             CCCC--------CCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEccC----CeEEEEeccCCeEE
Q 007257          404 PEMG--------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIK  471 (611)
Q Consensus       404 ~~~~--------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~d----G~l~~~GR~~d~i~  471 (611)
                      ++..        ...+..|+.+||+|+...   |.|.             |++||+.++..-    .++.+.||.+++++
T Consensus       373 ~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~  436 (581)
T 4epl_A          373 SETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILS  436 (581)
T ss_dssp             -------CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred             ccccCCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence            2111        123456788999998853   4443             999999998642    47999999999999


Q ss_pred             cCCceecCcHHHHHHHhc------Cc--CcceEEEEecCCC--CeEEEEEecC
Q 007257          472 ISQGEYVALEYLENVYCV------AP--IIEDIWVYGDSLK--SMLVAVVVPC  514 (611)
Q Consensus       472 ~~~G~~v~~~~iE~~l~~------~p--~V~~~~v~~~~~~--~~~~a~vv~~  514 (611)
                      + .|++++..+||+++.+      ..  .|.|..+......  .+-+.+.++.
T Consensus       437 ~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~  488 (581)
T 4epl_A          437 I-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS  488 (581)
T ss_dssp             S-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred             e-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence            7 8999999999999964      22  3666666653322  3444445553

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.72  E-value=1.2e-07  Score=99.89  Aligned_cols=160  Identities=13%  Similarity=0.101  Sum_probs=93.6

Q ss_pred             HcCCcee---EEEEecCCCCHHHHHHHHHHc-CCcee-eccccCCCCCceeeccCCCccccCccC-CCccCe-eEEEeec
Q 007257          331 RLGGRLR---LVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEV  403 (611)
Q Consensus       331 ~~~~~l~---~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~g~~~~~~~~~~~~~~~~~G-~~~~~~-~v~i~~~  403 (611)
                      ..-|+++   .++.||.   ..-...++..+ +.+++ ..|++||+- +.....+..  .++..+ ..+|+. =.++++.
T Consensus       299 ~lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~  372 (609)
T 4b2g_A          299 RIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMS--KPSEVSYTIMPNMAYFEFLPH  372 (609)
T ss_dssp             HHSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTS--CGGGCCEEECTTSCEEEEEEG
T ss_pred             HhCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCCC--CcccCceeecCCcEEEEEEec
Confidence            3446744   4455553   33334444444 67777 899999952 222211111  111112 122332 2234432


Q ss_pred             CCC------C-------CCCCCCCCCcEEEEecCCcccccCCChHhhhhhccCCccccCceEEEcc----CCeEEEEecc
Q 007257          404 PEM------G-------YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRK  466 (611)
Q Consensus       404 ~~~------~-------~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----dG~l~~~GR~  466 (611)
                      ++.      .       ...+..|+.+||+|+...   |+|.             |++||+.+++.    ..++.+.||.
T Consensus       373 ~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~  436 (609)
T 4b2g_A          373 EHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR-------------YRVGDILRVTGFHNSAPQFHFVRRK  436 (609)
T ss_dssp             GGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS-------------EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred             cccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh-------------eecCCEEEEeecCCCCcEEEEEEec
Confidence            221      0       123456788999998742   5554             99999999874    4689999999


Q ss_pred             CCeEEcCCceecCcHHHHHHHhc------CcC--cceEEEEecCCC--CeEEEEEec
Q 007257          467 KNLIKISQGEYVALEYLENVYCV------API--IEDIWVYGDSLK--SMLVAVVVP  513 (611)
Q Consensus       467 ~d~i~~~~G~~v~~~~iE~~l~~------~p~--V~~~~v~~~~~~--~~~~a~vv~  513 (611)
                      ++++++ .|+++++.+||++|.+      ..+  |.|..+......  .+-+.+.++
T Consensus       437 ~~~l~~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl  492 (609)
T 4b2g_A          437 NVLLSI-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWEL  492 (609)
T ss_dssp             TCCBCS-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred             CCeEEc-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEE
Confidence            999997 8999999999999963      223  556665543222  244444444

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=93.34  E-value=0.55  Score=48.02  Aligned_cols=105  Identities=14%  Similarity=0.086  Sum_probs=80.5

Q ss_pred             CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEeeC
Q 007257            7 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL   82 (611)
Q Consensus         7 pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l   82 (611)
                      ++.++.+..+  -|.+|..  -.+|...+...+..++..+...|+.++|++...++.+  ...+...++++..|+.++++
T Consensus        89 ~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  166 (437)
T 2y27_A           89 QDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF  166 (437)
T ss_dssp             GGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred             hhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence            4566654442  4556644  4679999988888888888888999999999988863  33455678889999999877


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHHh
Q 007257           83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL  114 (611)
Q Consensus        83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~  114 (611)
                      +.. +.+.+...|++.++.+++..+.....+.
T Consensus       167 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  197 (437)
T 2y27_A          167 GGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIA  197 (437)
T ss_dssp             CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHhCCCEEEECHHHHHHHH
Confidence            654 7888999999999999999887766553

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=93.08  E-value=0.47  Score=48.57  Aligned_cols=123  Identities=8%  Similarity=-0.046  Sum_probs=89.4

Q ss_pred             CCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEeeCC
Q 007257            8 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY   83 (611)
Q Consensus         8 d~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~   83 (611)
                      +.+|++.-+  -|.+|..  -.+|...+...+..++..+...|+.++|++...++-+  ...+..+++++..|+.+++.+
T Consensus        86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            455554442  4555544  4679999999898888888888999999999988753  344556788899999988876


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcchhHHHHhccccc-----cccCccEEEEecCC
Q 007257           84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL  133 (611)
Q Consensus        84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~  133 (611)
                      +. .++.+...|++.++.+++........+......     ....++.++.-.+.
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  217 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP  217 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence            54 678888999999999999988877665433211     13556666665543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=93.07  E-value=0.61  Score=47.80  Aligned_cols=105  Identities=13%  Similarity=0.090  Sum_probs=80.7

Q ss_pred             CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCEEeeC
Q 007257            7 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL   82 (611)
Q Consensus         7 pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l   82 (611)
                      ++.++.+..+  -|.+|..+  .+|...+...+..++..+...|+.++|++...++.+  ...+...++++..|+.++++
T Consensus        91 ~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  168 (443)
T 2y4o_A           91 REQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM  168 (443)
T ss_dssp             GGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred             hhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence            4555644432  46666554  678999988888888888888999999999988864  33455678888999998887


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHHh
Q 007257           83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL  114 (611)
Q Consensus        83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~  114 (611)
                      ++. ..+.+...|++.++.+++........+.
T Consensus       169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  199 (443)
T 2y4o_A          169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLI  199 (443)
T ss_dssp             CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHH
Confidence            664 7888889999999999999887766553

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.90  E-value=3.4  Score=42.91  Aligned_cols=121  Identities=7%  Similarity=0.014  Sum_probs=85.0

Q ss_pred             CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHhcCCEEeeC
Q 007257            6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL   82 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l   82 (611)
                      .||.+|++.-+  -|.+|..+  .+|+..+...+.....   ..|+.++|++...+|-.-. .+..+++++..|+.++..
T Consensus       161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            46777766553  45566544  6788888776665543   3488999999988886533 244567788899998877


Q ss_pred             CCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecC
Q 007257           83 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS  132 (611)
Q Consensus        83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~  132 (611)
                      + ..+++.+...+++.++.+++........+..........++.++...+
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~  284 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA  284 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence            5 467889999999999999999988877665543333235566655443

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=88.51  E-value=2  Score=42.66  Aligned_cols=122  Identities=14%  Similarity=0.046  Sum_probs=79.1

Q ss_pred             CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch--hHHHHHHHHHhcCCEEee
Q 007257            6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP   81 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~~~   81 (611)
                      .++.++.+..+  -|.+|..+  .+|...+...+...+..+...|+.++|++..++|-+.  -.....+++...|+.+++
T Consensus        89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~  166 (369)
T 3hgu_A           89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS  166 (369)
T ss_dssp             CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred             CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence            35665665543  46666554  5688888888877777777789999999999888633  233445555888985555


Q ss_pred             CCCCCChh-----------------------HHHHHHhhcCccEEEEcchhHHHHhcccc---ccccCccEEEEec
Q 007257           82 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFT  131 (611)
Q Consensus        82 l~~~~~~~-----------------------~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~i~~~~  131 (611)
                      ..  +.+.                       .+...+++.++.+++........+.+...   .....++.++.-.
T Consensus       167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gG  240 (369)
T 3hgu_A          167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGG  240 (369)
T ss_dssp             CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEES
T ss_pred             cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECC
Confidence            43  3344                       66678999999999999887776654321   1224455555544

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=84.76  E-value=5.4  Score=41.94  Aligned_cols=121  Identities=12%  Similarity=0.001  Sum_probs=82.7

Q ss_pred             CCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCEEeeCC
Q 007257            8 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY   83 (611)
Q Consensus         8 d~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~~~l~   83 (611)
                      +.+|++.-+  -|.+|..  -.+|.+.+...+......+...++.++|++...+|-+-.+  ...+++.+ .|+..+.++
T Consensus       192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~  268 (548)
T 2d1s_A          192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT  268 (548)
T ss_dssp             TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred             CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence            677766553  4555543  4789998877766655443335788999998888765433  33456777 999988775


Q ss_pred             CCCChhHHHHHHhhcCccEEEEcchhHHHHhcccc---ccccCccEEEEecC
Q 007257           84 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS  132 (611)
Q Consensus        84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~~i~~~~~  132 (611)
                       ...++.+...+++.++.+++........+.....   ..+..++.++.-..
T Consensus       269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~  319 (548)
T 2d1s_A          269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA  319 (548)
T ss_dssp             -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred             -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence             5678899999999999999999887776644321   13345666655443

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=84.63  E-value=11  Score=39.32  Aligned_cols=122  Identities=7%  Similarity=-0.064  Sum_probs=83.7

Q ss_pred             CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH--HH-HHHHHHhcCCEEe
Q 007257            6 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV   80 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~~~~   80 (611)
                      .|+.+|++.-+  -|.+|..  -.+|...+...+.....   ..++.++|++...+|-+-.+  .. .+++.+..|+.++
T Consensus       180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v  254 (539)
T 1mdb_A          180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV  254 (539)
T ss_dssp             CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred             CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence            45666666553  4555544  47899888776655443   34788999998888865433  33 4788889999988


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccc---cccccCccEEEEecCC
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL  133 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~  133 (611)
                      ..+ ...++.+...+++.++.+++........+....   ...++.++.++.-.+.
T Consensus       255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~  309 (539)
T 1mdb_A          255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK  309 (539)
T ss_dssp             ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred             ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence            765 467888999999999999999887766554322   2234566666655443

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=83.24  E-value=6.8  Score=41.97  Aligned_cols=122  Identities=13%  Similarity=0.022  Sum_probs=87.2

Q ss_pred             CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHhcCCEEeeC
Q 007257            6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL   82 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l   82 (611)
                      .||.+|++.-+  -|.+|..+  .+|.+.+...+.    .....++.++|++...+|-+-+. +..+++.+..|+.++..
T Consensus       162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~  235 (620)
T 4dg8_A          162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN  235 (620)
T ss_dssp             CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred             CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence            36777765553  56677655  678877654332    22334889999999998877553 45578888999988876


Q ss_pred             C-CCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCC
Q 007257           83 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL  133 (611)
Q Consensus        83 ~-~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  133 (611)
                      + ....++.+...+++.++.+++........+..........++.++.-.+.
T Consensus       236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~  287 (620)
T 4dg8_A          236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI  287 (620)
T ss_dssp             CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred             ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence            4 35678899999999999999999887776655444556677777776654

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=81.64  E-value=14  Score=38.39  Aligned_cols=120  Identities=8%  Similarity=-0.086  Sum_probs=79.5

Q ss_pred             CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH--HHHHHHHhcCCEEee
Q 007257            6 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP   81 (611)
Q Consensus         6 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~~~   81 (611)
                      .|+.+|++.-+  -|.+|..+  .+|...+...+...+..   .++.++|++...+|-.-.+-  ..+++++ .|+..+.
T Consensus       168 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~  241 (517)
T 3r44_A          168 GGDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLIS  241 (517)
T ss_dssp             CTTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEE
T ss_pred             CCCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEE
Confidence            45666665553  46666554  77888887776665544   38899999998888764432  2345555 8888887


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccc---cccccCccEEEEecC
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS  132 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~~~~~~i~~~~~  132 (611)
                      .+ ...+..+...+.+.++.++.........+....   ....+.++.++.-..
T Consensus       242 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe  294 (517)
T 3r44_A          242 MP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA  294 (517)
T ss_dssp             CS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred             eC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence            64 578889999999999999999887776554321   123345666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	611
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-65
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	9e-59
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-53
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-48
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-41
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-39
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	9e-33

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  224 bits (573), Expect = 1e-65
 Identities = 83/513 (16%), Positives = 163/513 (31%), Gaps = 74/513 (14%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC  +  +   ++    P
Sbjct: 105 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 164

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQ 143
            AV   +  +    V   D+ V+   S   +       +   V      +  ++    + 
Sbjct: 165 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 224

Query: 144 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 203
                  W   L      E +       +   I+YTSG++G PKGV+ T      + +  
Sbjct: 225 WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATT 284

Query: 204 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRD 257
             ++  +       D+Y     +  +       Y     GA+   + G         +  
Sbjct: 285 FKYVFDY----HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQ 340

Query: 258 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 317
            + + +  +L   P                                 A M  G K  E +
Sbjct: 341 VVDKHQVNILYTAPTAIR-----------------------------ALMAEGDKAIEGT 371

Query: 318 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC--CAFLVQGYGLTETCGP 374
             +               LR++ S G P++ E  E + +        +V  +  TET G 
Sbjct: 372 DRS--------------SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF 417

Query: 375 TTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYY 431
                P  + +  G+A       +  L  V   G  P +    G + +           +
Sbjct: 418 MITPLPGAIELKAGSATRPFFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLF 474

Query: 432 KNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 488
            + +   ++        + +GD  +   +G   I  R  +++ +S G  +    +E+   
Sbjct: 475 GDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALV 533

Query: 489 VAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 518
             P I +  V G         + A V     + 
Sbjct: 534 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE 566

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  203 bits (517), Expect = 9e-59
 Identities = 118/518 (22%), Positives = 181/518 (34%), Gaps = 82/518 (15%)

Query: 17  FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 76
                 G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   + 
Sbjct: 30  VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 89

Query: 77  LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE 136
            +       L P  + +IL+HAE D V + D  +  L+       + ++  V       E
Sbjct: 90  AVLHTANPRLSPKEIAYILNHAE-DKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE 148

Query: 137 QKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 196
                                    E + +       C + YT+GT+G PKGVV +H  +
Sbjct: 149 --------------GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRAL 194

Query: 197 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNA 254
                            ++  DV L  +P+ H+    +       GA         D  +
Sbjct: 195 VLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPAS 251

Query: 255 LRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 314
           L +       T  AGVP V+                                        
Sbjct: 252 LVELFDGEGVTFTAGVPTVW---------------------------------------- 271

Query: 315 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP 374
                  L  + +        LR ++ GG+     +           + QGYGLTET   
Sbjct: 272 -----LALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPV 325

Query: 375 TTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 424
               F           +++ +    G       LR+ +  E    P D    GEV ++G 
Sbjct: 326 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGP 384

Query: 425 TLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 483
            +  GYY N + TR ++  DG+F TGDI      G V+I DR K+LIK   GE+++   L
Sbjct: 385 WITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDL 443

Query: 484 ENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 518
           EN     P +++  V        +   +AVVVP  E  
Sbjct: 444 ENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP 481

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  191 bits (486), Expect = 1e-53
 Identities = 88/518 (16%), Positives = 169/518 (32%), Gaps = 81/518 (15%)

Query: 29  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 87
           TYKE+ EEV Q+   L  S G   G  V +Y    P+ +  + A + +  I   ++    
Sbjct: 92  TYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 151

Query: 88  PGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 139
             ++   ++  +   V   D+        + K ++    R    +R ++ +     +   
Sbjct: 152 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNN 207

Query: 140 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF 199
            +V                        P    +   ++YTSG++G PKGV  +       
Sbjct: 208 PSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLG 267

Query: 200 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLN 253
                L   ++      +DV+ +   +  I       Y     G +   + G     + +
Sbjct: 268 A----LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYS 323

Query: 254 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 313
              D + E K T     P                 R L+R     +  + L         
Sbjct: 324 RYWDIIDEHKVTQFYVAPTAL--------------RLLKRAGDSYIENHSLK-------- 361

Query: 314 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTE 370
                                 LR + S G P++ EV E+           +V  Y  TE
Sbjct: 362 ---------------------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 400

Query: 371 TCGPTTVCFPDEMCMV--GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TL 426
           +           +  +  G+A       +  + + P  G         G + V+    + 
Sbjct: 401 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSF 459

Query: 427 FSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 483
               +KN D   ++ +    G++ TGD      +G + I+ R  +++ +S G  ++   +
Sbjct: 460 ARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEI 518

Query: 484 ENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 518
           E      PI+ +  V G   D     + A VV   + +
Sbjct: 519 EAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS 556

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  175 bits (443), Expect = 3e-48
 Identities = 114/496 (22%), Positives = 183/496 (36%), Gaps = 61/496 (12%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 49  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 108

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             +   ++ ++   VFV  K ++++L+      ++L ++     + ++      Q+    
Sbjct: 109 RELLNSMNISQPTVVFVSKKGLQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTF 164

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
            +        + + +     +   I  IM +SG++G PKGV L H T     S     + 
Sbjct: 165 VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI- 223

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLL 267
            F +++  D   LS +P  H         +   G   V  Y  +       L + K    
Sbjct: 224 -FGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSA 282

Query: 268 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 327
             VP +F                          K  L                       
Sbjct: 283 LLVPTLFS----------------------FFAKSTLIDKYDL----------------- 303

Query: 328 VKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
                   L  + SGGAPLS E  E   +      + QGYGLTET     +  P+     
Sbjct: 304 ------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKP 356

Query: 387 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGW 445
           G  G V  + E ++ ++       ++    GE+CVRG  + SGY  NP+ T   I  DGW
Sbjct: 357 GAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGW 414

Query: 446 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 502
            H+GDI     +    I+DR K+LIK   G  VA   LE++    P I D  V G   D 
Sbjct: 415 LHSGDIAYWDEDEHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDD 473

Query: 503 LKSMLVAVVVPCEEDT 518
              +  AVVV     T
Sbjct: 474 AGELPAAVVVLEHGKT 489

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  153 bits (387), Expect = 6e-41
 Identities = 89/493 (18%), Positives = 145/493 (29%), Gaps = 71/493 (14%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             +  ++   E+    +   +          S  R+  +                    P
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGE------------P 138

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
           YS+           +E    +P     I YTSGT+G PK             S V     
Sbjct: 139 YSYGP--------PIEDPQREPAQPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMST 187

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 268
           Q   +    +V L  +PL H++                    +                 
Sbjct: 188 QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRP-------------- 233

Query: 269 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 328
                                         + + ++  +       +A   A   A   +
Sbjct: 234 ------------------------VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL 269

Query: 329 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 388
           K      LR V   GA +   V E +        V  YG TE      +  P     +  
Sbjct: 270 K---LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAP 326

Query: 389 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHT 448
                V     +     +     +      +     + F GY   P  T E + DGW+ T
Sbjct: 327 GFFSEVR---IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383

Query: 449 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKS 505
            D+    P G V+I+ R  ++I    GE +    +E V   AP + ++ V G        
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442

Query: 506 MLVAVVVPCEEDT 518
            + A VVP   +T
Sbjct: 443 SVTACVVPRLGET 455

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  149 bits (376), Expect = 2e-39
 Identities = 79/500 (15%), Positives = 156/500 (31%), Gaps = 92/500 (18%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           TY E+  +  Q+       G      VGI           + A        VP+      
Sbjct: 50  TYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPK 109

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + +ILD ++   +  Q   V  +                            +Q   + 
Sbjct: 110 ERIQYILDDSQARMLLTQKHLVHLI--------------------------HNIQFNGQV 143

Query: 149 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 208
             ++E     +      +P +  ++  ++YTSGT+G+PKG +L H+ I+           
Sbjct: 144 EIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLK-----VFF 198

Query: 209 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 268
           +    +T  D    F  ++              GAS+                       
Sbjct: 199 ENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL------------------- 239

Query: 269 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 328
                            ++      +    + + ++  + +            +L+ +  
Sbjct: 240 -----------------KDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQT- 281

Query: 329 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 388
                     +I+ G+  S  +    +       +  YG TET    T     +  +  +
Sbjct: 282 ----------LITAGSATSPSLVNKWKEKVT--YINAYGPTETTICATTWVATKETIGHS 329

Query: 389 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------ 442
               +     ++  V E           GE+C+ G+ L  GY+K P+LT +  +      
Sbjct: 330 VPIGAPIQNTQIYIVDENL-QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVP 388

Query: 443 -DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG- 500
            +  + TGD  + L +G ++ + R  N +KI  G  V LE +E++      I +  V   
Sbjct: 389 GEKLYKTGDQARWLSDGNIEYLGRIDNQVKIR-GHRVELEEVESILLKHMYISETAVSVH 447

Query: 501 --DSLKSMLVAVVVPCEEDT 518
                +  L A  V  +   
Sbjct: 448 KDHQEQPYLCAYFVSEKHIP 467

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  130 bits (327), Expect = 9e-33
 Identities = 83/498 (16%), Positives = 156/498 (31%), Gaps = 72/498 (14%)

Query: 29  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 88
           +Y+E+     ++ +  +  G +   RV +   N  ++ E + A   L  + V    +   
Sbjct: 52  SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111

Query: 89  GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 148
             + +  + AE     + D           R  Q               K   ++  I  
Sbjct: 112 SEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ--------------SKLPTLKNIIVA 157

Query: 149 YSWDEFLHLGKVNEMEILPPQ--PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 206
              +EFL L  ++   +  P+    ++  +  + G++G  K +  TH+     +      
Sbjct: 158 GEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV 217

Query: 207 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 266
                  +    +    +   + L           G  V                     
Sbjct: 218 CWLDHSTV---YLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP----------------- 257

Query: 267 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 326
                                  P     F  + + K+    +             +   
Sbjct: 258 ----------------------SPSPDDAFPLIEREKVTITALVPPL-----AMVWMDAA 290

Query: 327 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 386
             +      L+++  GGA  S E    ++      L Q +G+ E     T     E  +V
Sbjct: 291 SSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIV 350

Query: 387 GTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-G 444
            T G P+S Y E R+    +     +     G +  RG     GYYK  +    S  + G
Sbjct: 351 NTQGKPMSPYDESRV--WDDHD-RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDG 407

Query: 445 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---D 501
           ++ TGDI ++  +G + +  R K+ I    GE VA E +EN     P + D  +      
Sbjct: 408 FYRTGDIVRLTRDGYIVVEGRAKDQINRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQ 466

Query: 502 SLKSMLVAVVVPCEEDTK 519
            L       ++P +E  K
Sbjct: 467 FLGERSCVFIIPRDEAPK 484

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	611
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	81.66

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.1e-74  Score=634.29  Aligned_cols=510  Identities=16%  Similarity=0.188  Sum_probs=410.3

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +++++||++|+++.   .++.+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        81 h~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~  157 (643)
T d1pg4a_          81 HLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV  157 (643)
T ss_dssp             GHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEe
Confidence            56778999999987   445677789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHH---------Hhcc-ccccccCccEEEEecCCcHHHHHHhhhCCCceeeH
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSP-DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  151 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~---------~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  151 (611)
                      +++.++++++.++|++++++++|+++.....         .... ..........++++.......    .........+
T Consensus       158 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~  233 (643)
T d1pg4a_         158 IFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----DWQEGRDLWW  233 (643)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----CCCBTTEEEH
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----ccccccchhh
Confidence            9999999999999999999999998653211         1111 111235556666665432100    0001112233


Q ss_pred             HHHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhh-cccccccccCCCCCCcEEEEecchhhHH
Q 007257          152 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHIL  230 (611)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~  230 (611)
                      ...... ......+....++++++|+|||||||.||||+++|.+++..... ....+     ++..+|++++.+|++|++
T Consensus       234 ~~~~~~-~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~  307 (643)
T d1pg4a_         234 RDLIEK-ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYWCTADVGWVT  307 (643)
T ss_dssp             HHHHTT-SCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhhcc-cCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEEEEeCChHHHH
Confidence            333332 23444455668899999999999999999999999997655443 33334     688999999999999999


Q ss_pred             HHHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007257          231 DRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  304 (611)
Q Consensus       231 g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (611)
                      ++.. ++.+++.|+++++++.     ++..+++.++++++|+++++|+++..|.+....                     
T Consensus       308 g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~---------------------  366 (643)
T d1pg4a_         308 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------------------  366 (643)
T ss_dssp             HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG---------------------
T ss_pred             HHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch---------------------
Confidence            9876 5567999999999763     789999999999999999999999988652111                     


Q ss_pred             HHHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccCC
Q 007257          305 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFPD  381 (611)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~~  381 (611)
                                    ..+.        ..+++||.++++|+++++++.+++.+.++   +++++.||+||+|+.++...+.
T Consensus       367 --------------~~~~--------~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~  424 (643)
T d1pg4a_         367 --------------AIEG--------TDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG  424 (643)
T ss_dssp             --------------GTTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT
T ss_pred             --------------hccc--------cCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCC
Confidence                          1111        12359999999999999999999999884   7799999999999877765544


Q ss_pred             C-ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEEEc
Q 007257          382 E-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQIL  455 (611)
Q Consensus       382 ~-~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~  455 (611)
                      . ....+++|+|++|++++++| +++  .+++.++.|||+|+|  |+++.||+++++.+.+.+   .+|||+|||+|++|
T Consensus       425 ~~~~~~gs~G~p~~g~~v~ivd-~~g--~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d  501 (643)
T d1pg4a_         425 AIELKAGSATRPFFGVQPALVD-NEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD  501 (643)
T ss_dssp             TCCBCTTCCBSBCTTCCEEEEC-TTC--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEEC
T ss_pred             ccCCCCCccccccCCCEEEEEC-CCC--CCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEEC
Confidence            3 44568999999999999998 555  456678899999999  578899999999888776   58999999999999


Q ss_pred             cCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHH
Q 007257          456 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  532 (611)
Q Consensus       456 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~  532 (611)
                      +||+|++.||.||+|++ +|++|+|.|||++|.+||+|.||+|++.++.   +.++|+|+++++..              
T Consensus       502 ~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~--------------  566 (643)
T d1pg4a_         502 EDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE--------------  566 (643)
T ss_dssp             TTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------------
T ss_pred             CCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCC--------------
Confidence            99999999999999997 8999999999999999999999999997654   48999999987531              


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 007257          533 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  599 (611)
Q Consensus       533 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~  599 (611)
                         .+.+    +..+|+++++ ++|+.|++|+.|+++++.      |+|++||++|++|++++..+.
T Consensus       567 ---~~~~----~~~~i~~~~~-~~L~~~~vP~~i~~v~~l------P~T~sGKi~R~~Lr~~~~~~~  619 (643)
T d1pg4a_         567 ---PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGDT  619 (643)
T ss_dssp             ---CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC-
T ss_pred             ---CCHH----HHHHHHHHHH-hhCCcccCccEEEEECCC------CCCCCcCccHHHHHHHhcCCc
Confidence               1222    2334555554 679999999999998765      999999999999999987643

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-73  Score=625.40  Aligned_cols=525  Identities=18%  Similarity=0.182  Sum_probs=405.5

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      +|+++||++|+++.   .++.+..+++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|||+++|++++
T Consensus        68 ~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~v  144 (640)
T d1ry2a_          68 HALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHS  144 (640)
T ss_dssp             HHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred             HHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEee
Confidence            57889999999987   556677799999999999999999997 57999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHH--------HHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHH
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVK--------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  152 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  152 (611)
                      |+++.++++++.++++++++++++++.....        ...........................   .........+.
T Consensus       145 pi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  221 (640)
T d1ry2a_         145 VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---AFHAPRDLDWA  221 (640)
T ss_dssp             ECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---CCCSSSEEEHH
T ss_pred             cCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---ccccccccccc
Confidence            9999999999999999999999999875321        111112222233333333332211000   00001111222


Q ss_pred             HHHhcccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhccc-ccccccCCCCCCcEEEEecchhhHHH
Q 007257          153 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLSFLPLAHILD  231 (611)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~p~~~~~g  231 (611)
                      ... ..........+..++++++|+|||||||.||||+++|.+++........ .+     .+..+|++++.+|++|.+|
T Consensus       222 ~~~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g  295 (640)
T d1ry2a_         222 TEK-KKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFFTAGDIGWITG  295 (640)
T ss_dssp             HHH-TTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEEECSCTTSHHH
T ss_pred             ccc-cccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCcccceeeccchhhhhh
Confidence            211 2222334445567889999999999999999999999998776554433 33     6889999999999999999


Q ss_pred             HHH-HHHHhhcCceEEEecC-----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007257          232 RVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  305 (611)
Q Consensus       232 ~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (611)
                      +.. ++.++..|+++++++.     ++..+++.++++++|+++++|+++..|.+..                        
T Consensus       296 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------  351 (640)
T d1ry2a_         296 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG------------------------  351 (640)
T ss_dssp             HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC------------------------
T ss_pred             HHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc------------------------
Confidence            876 5567899999888764     7889999999999999999999998875311                        


Q ss_pred             HHhhcCCCCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcC---CceeeccccCCCCCceeeccCCC
Q 007257          306 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETCGPTTVCFPDE  382 (611)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~g~~~~~~~~~~  382 (611)
                                 ....+.        ..+++||.+++||+++++++.+++.+.+|   .++++.||+||++..........
T Consensus       352 -----------~~~~~~--------~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~  412 (640)
T d1ry2a_         352 -----------DSYIEN--------HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG  412 (640)
T ss_dssp             -----------TTSSSS--------CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT
T ss_pred             -----------cccccc--------CCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCC
Confidence                       011111        12359999999999999999999999885   56999999999998877665443


Q ss_pred             --ccccCccCCCccCeeEEEeecCCCCCCCCCCCCCcEEEEec--CCcccccCCChHhhhhhc---cCCccccCceEEEc
Q 007257          383 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGWFHTGDIGQIL  455 (611)
Q Consensus       383 --~~~~~~~G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~  455 (611)
                        ...++++|.|+++++++++| ++++....+.++.|||++++  |+++.||+++++.+.+.|   .+|||+|||+|++|
T Consensus       413 ~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d  491 (640)
T d1ry2a_         413 VTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKD  491 (640)
T ss_dssp             CCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEEC
T ss_pred             cCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeEC
Confidence              34568999999999999999 67766666666789999998  689999999999999887   35999999999999


Q ss_pred             cCCeEEEEeccCCeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHH
Q 007257          456 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  532 (611)
Q Consensus       456 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~  532 (611)
                      +||+|++.||.||+|++ +|++|+|.+||++|.+||+|.||+|+|.+++   +.++|+|+++++.....           
T Consensus       492 ~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~-----------  559 (640)
T d1ry2a_         492 KDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST-----------  559 (640)
T ss_dssp             TTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------------
T ss_pred             CCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccc-----------
Confidence            99999999999999996 8999999999999999999999999998765   48999999987642110           


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHh
Q 007257          533 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE  604 (611)
Q Consensus       533 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~~y~  604 (611)
                         ...+..+.+.+.|.++++ ++|++|++|+.|+++++.      |+|++|||+|++|+++++.+.+++..
T Consensus       560 ---~~~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~Lr~~~~~~~~~~~d  621 (640)
T d1ry2a_         560 ---ATDDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAGESDQLGD  621 (640)
T ss_dssp             --------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC--------
T ss_pred             ---cchHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeCCC------CCCCCcCccHHHHHHHHhCCccccCC
Confidence               001111234455666665 679999999999998765      99999999999999999876665543

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.7e-71  Score=596.00  Aligned_cols=494  Identities=24%  Similarity=0.303  Sum_probs=377.2

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   +  +++++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        20 ~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp   94 (534)
T d1v25a_          20 AAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT   94 (534)
T ss_dssp             HHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEe
Confidence            57899999999987   3  466789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccccc
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN  161 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (611)
                      ++|.++.+++.++|+.+++++++++........... ........++........          ........    ...
T Consensus        95 l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~----~~~  159 (534)
T d1v25a_          95 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPE----------GYLAYEEA----LGE  159 (534)
T ss_dssp             CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCT----------TCEEHHHH----CCS
T ss_pred             cCCCCCHHHHHHHHHhhccccccccchhhhhHHHHh-hcccccceeEEeeccccc----------cccccccc----ccc
Confidence            999999999999999999999999988776654332 233444455544433210          01111111    112


Q ss_pred             CCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhc
Q 007257          162 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR  241 (611)
Q Consensus       162 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~  241 (611)
                      ........++++++++|||||||.||+|.++|.++...........   .......+++++.+|++|.+++...+..+..
T Consensus       160 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~  236 (534)
T d1v25a_         160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHVNAWCLPYAATLV  236 (534)
T ss_dssp             CCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSHHHHTHHHHHHHH
T ss_pred             cccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhhccccccceeeee
Confidence            2334456788999999999999999999999999986554432222   2357788999999999999999998888888


Q ss_pred             CceEEEecC--ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCcchH
Q 007257          242 GASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL  319 (611)
Q Consensus       242 G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (611)
                      |+++++...  ++..+...+.++++|+++++|.++..+.......                                   
T Consensus       237 g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~-----------------------------------  281 (534)
T d1v25a_         237 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST-----------------------------------  281 (534)
T ss_dssp             TCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-----------------------------------
T ss_pred             cceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccc-----------------------------------
Confidence            888887755  8999999999999999999999999887643322                                   


Q ss_pred             HHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCc----------cccCcc
Q 007257          320 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM----------CMVGTA  389 (611)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~----------~~~~~~  389 (611)
                                ...+++||.+++||++++++..+++++ ++..+++.||+||++..++.......          ...+++
T Consensus       282 ----------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (534)
T d1v25a_         282 ----------GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT  350 (534)
T ss_dssp             ----------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSC
T ss_pred             ----------cccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccccccc
Confidence                      122369999999999999999999886 49999999999999998887654321          234789


Q ss_pred             CCCccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCC
Q 007257          390 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN  468 (611)
Q Consensus       390 G~~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d  468 (611)
                      |+|++|++++|+| +++...+.+.++.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++++||++++.||.+|
T Consensus       351 G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~  429 (534)
T d1v25a_         351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKD  429 (534)
T ss_dssp             BEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSC
T ss_pred             eeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEeccccc
Confidence            9999999999999 78877777778899999999999999999999999998 899999999999999999999999999


Q ss_pred             eEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 007257          469 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  545 (611)
Q Consensus       469 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (611)
                      +|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++.+..                 ..+++     
T Consensus       430 ~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~-----------------~~~~~-----  486 (534)
T d1v25a_         430 LIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP-----------------TPEEL-----  486 (534)
T ss_dssp             EEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------------------
T ss_pred             EEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCC-----------------CHHHH-----
Confidence            9997 8999999999999999999999999987654   37889888876431                 01111     


Q ss_pred             HHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 007257          546 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  597 (611)
Q Consensus       546 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  597 (611)
                        ++.++ +..||.|++|..|+++++.      |+|++|||+|++|+++|++
T Consensus       487 --~~~~~-~~~l~~~~~P~~i~~~~~l------P~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         487 --NEHLL-KAGFAKWQLPDAYVFAEEI------PRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             ----------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred             --HHHHH-HhcCCcCCCccEEEEECCC------CCCCCccccHHHHHHHHHh
Confidence              11222 4689999999999988764      9999999999999998854

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=6.5e-69  Score=580.92  Aligned_cols=497  Identities=25%  Similarity=0.270  Sum_probs=383.5

Q ss_pred             cccC---CCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEE
Q 007257            3 VQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC   79 (611)
Q Consensus         3 a~~~---pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   79 (611)
                      +++|   |+++|+++.   ++    .+++||+||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        27 ~~~~~~~P~~~a~~d~---~~----~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~   99 (541)
T d1lcia_          27 MKRYALVPGTIAFTDA---HI----EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAV   99 (541)
T ss_dssp             HHHHHTSTTCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEE
T ss_pred             HHhhCCCCCeEEEEeC---CC----CeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEE
Confidence            4555   777777654   21    1689999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc
Q 007257           80 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  159 (611)
Q Consensus        80 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (611)
                      +|+++.++.+++.++|+.++++++|++++....+.+.. ...+....+++++....         ......+........
T Consensus       100 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  169 (541)
T d1lcia_         100 APANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD---------YQGFQSMYTFVTSHL  169 (541)
T ss_dssp             EECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC---------BTTBEEHHHHHHHHS
T ss_pred             EecCCCCCHHHHHHHHHhccceEEeeeccccccchhcc-ccccccceeeeecCCcc---------ccccchhhhhhhhhc
Confidence            99999999999999999999999999998776654433 33466667776654321         112333333332221


Q ss_pred             c------cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHH
Q 007257          160 V------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  233 (611)
Q Consensus       160 ~------~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~  233 (611)
                      .      .........++++++++|||||||.||+|.++|++++.........+.  ......++++++.+|++|.++..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~  247 (541)
T d1lcia_         170 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDTAILSVVPFHHGFGMF  247 (541)
T ss_dssp             CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECSCTTSHHHHH
T ss_pred             cccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--ccccccccccccccccccccccc
Confidence            1      122233446788999999999999999999999999876665544331  12567789999999999999998


Q ss_pred             HHHHHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCC
Q 007257          234 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  312 (611)
Q Consensus       234 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (611)
                      ..+..+..++..+.... +.......+..+++|.++.+|.++..+.+....                             
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~-----------------------------  298 (541)
T d1lcia_         248 TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI-----------------------------  298 (541)
T ss_dssp             HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG-----------------------------
T ss_pred             ccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc-----------------------------
Confidence            88887777888777766 889999999999999999999999887652111                             


Q ss_pred             CCCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCC-ceeeccccCCCCCceeeccCCCccccCccCC
Q 007257          313 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  391 (611)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~  391 (611)
                              .        ...+++++.+++||++++++..+++.+.++. .+++.||+||+++.++....... ..+++|+
T Consensus       299 --------~--------~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~-~~~svG~  361 (541)
T d1lcia_         299 --------D--------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDD-KPGAVGK  361 (541)
T ss_dssp             --------G--------GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC----CCCCBE
T ss_pred             --------c--------ccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccC-CCCcccc
Confidence                    1        1122589999999999999999999998864 68999999999998887766544 3489999


Q ss_pred             CccCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeE
Q 007257          392 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI  470 (611)
Q Consensus       392 ~~~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i  470 (611)
                      |+|+++++|+| ++. ..+++.|+.|||+|+|++++.||+++++.+...+ .+|||+|||+|+++++|.+++.||.+|+|
T Consensus       362 p~~~~~~~i~d-~d~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i  439 (541)
T d1lcia_         362 VVPFFEAKVVD-LDT-GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI  439 (541)
T ss_dssp             ECTTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CE
T ss_pred             ccCCCEEEEEE-CCC-CcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEE
Confidence            99999999998 443 3677788999999999999999999999998888 68999999999999999999999999999


Q ss_pred             EcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 007257          471 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  547 (611)
Q Consensus       471 ~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (611)
                      ++ +|++|+|.+||++|.+||+|.||+|++.++.   +.++|+|+++++..        .        +..        +
T Consensus       440 ~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~--------~--------~~~--------~  494 (541)
T d1lcia_         440 KY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT--------M--------TEK--------E  494 (541)
T ss_dssp             EE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------C--------CHH--------H
T ss_pred             EE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCC--------C--------CHH--------H
Confidence            97 8999999999999999999999999986544   47899999876430        0        112        2


Q ss_pred             HHHHHHhCCCCCc-ceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 007257          548 LKNAAERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  598 (611)
Q Consensus       548 l~~~~~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  598 (611)
                      |.++++ ++|+++ +.|+.|+++++.      |+|++||++|++|++++.++
T Consensus       495 l~~~~~-~~l~~~~~~p~~i~~v~~l------P~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         495 IVDYVA-SQVTTAKKLRGGVVFVDEV------PKGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             HHHHHH-HHSCGGGSCTTEEEEESSC------CC-----CCHHHHHHHHHHH
T ss_pred             HHHHHH-HhCCccccCCcEEEEeCCC------CcCCCcCccHHHHHHHHHHh
Confidence            334443 446555 468889888664      99999999999999998653

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.2e-65  Score=554.65  Aligned_cols=492  Identities=18%  Similarity=0.161  Sum_probs=397.8

Q ss_pred             CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      ++|+++||++|+++.   +      +++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus        33 ~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~v  103 (536)
T d1mdba_          33 DRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPV  103 (536)
T ss_dssp             HHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEE
Confidence            368899999999986   3      7999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHh----ccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHh
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL----SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  156 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (611)
                      |++|.++.+++.++|+.++++++++++.......    .......+.....+......            ....++++  
T Consensus       104 pl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~--  169 (536)
T d1mdba_         104 FALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EFLPLEDL--  169 (536)
T ss_dssp             ECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TSEEGGGC--
T ss_pred             ecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cccchhhc--
Confidence            9999999999999999999999999864332110    00111112222222222111            11122111  


Q ss_pred             cccccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-H
Q 007257          157 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  235 (611)
Q Consensus       157 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~  235 (611)
                        ........+..++++++++|||||||.||+|.+||.++...+......+     .+..++++++..|++|.+++.. .
T Consensus       170 --~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~~~l~~~~  242 (536)
T d1mdba_         170 --HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAHNYPLSSPG  242 (536)
T ss_dssp             --CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTSHHHHHSSH
T ss_pred             --ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----ccccccccccccccccccceeecc
Confidence              1223334456889999999999999999999999999999998887777     8899999999999999999865 3


Q ss_pred             HH-HhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCC
Q 007257          236 EY-FFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  313 (611)
Q Consensus       236 ~~-~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (611)
                      +. .+..|.+++..+. ++..++..+++++++.+..+|..+..+.......                             
T Consensus       243 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  293 (536)
T d1mdba_         243 VLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-----------------------------  293 (536)
T ss_dssp             HHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-----------------------------
T ss_pred             ccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc-----------------------------
Confidence            33 3555677766655 9999999999999999999999988876532211                             


Q ss_pred             CCcchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCc
Q 007257          314 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  393 (611)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~  393 (611)
                                      ....++++.+++||+++++...+++.+.++......|+.+|.+..............+++|.|+
T Consensus       294 ----------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~  357 (536)
T d1mdba_         294 ----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM  357 (536)
T ss_dssp             ----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEES
T ss_pred             ----------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCC
Confidence                            1123589999999999999999999999999999999999988777666655555568889988


Q ss_pred             cCeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhc-cCCccccCceEEEccCCeEEEEeccCCeEEc
Q 007257          394 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKI  472 (611)
Q Consensus       394 ~~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~  472 (611)
                      ++....++..+++  .+++.++.|||+++|+.++.||++++..+...+ .+|||+|||++++++||+|++.||.||+|++
T Consensus       358 ~~~~~~~v~~~~g--~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~  435 (536)
T d1mdba_         358 SPYDESRVWDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR  435 (536)
T ss_dssp             STTCEEEEECTTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEEC
T ss_pred             CCcceEEEEcCCC--CeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEE
Confidence            7665555552433  566778899999999999999999999998888 7799999999999999999999999999997


Q ss_pred             CCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHH
Q 007257          473 SQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK  549 (611)
Q Consensus       473 ~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  549 (611)
                       +|++|+|.+||++|.+||+|.||+|++.++.   +.++|+|++.++..                 ..        ++|+
T Consensus       436 -~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~-----------------~~--------~~l~  489 (536)
T d1mdba_         436 -GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP-----------------KA--------AELK  489 (536)
T ss_dssp             -SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC-----------------CH--------HHHH
T ss_pred             -CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCC-----------------CH--------HHHH
Confidence             8999999999999999999999999986543   37899999876431                 11        2344


Q ss_pred             HHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 007257          550 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  601 (611)
Q Consensus       550 ~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~~~~  601 (611)
                      ++++++.||.|++|+.|+++++.      |+|++|||+|++|+++|+++|.+
T Consensus       490 ~~l~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~l~a  535 (536)
T d1mdba_         490 AFLRERGLAAYKIPDRVEFVESF------PQTGVGKVSKKALREAISEKLLA  535 (536)
T ss_dssp             HHHHHTTCCGGGSCSEEEECSSC------CBCTTSCBCHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCcCcCccEEEEECCC------CcCCCcCccHHHHHHHHHHHHhC
Confidence            44444569999999999998765      99999999999999999887753

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=3.9e-66  Score=555.48  Aligned_cols=463  Identities=20%  Similarity=0.229  Sum_probs=381.0

Q ss_pred             CccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEe
Q 007257            1 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV   80 (611)
Q Consensus         1 ~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~   80 (611)
                      ++|+++||++|+++.    +     +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus        31 ~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v  101 (514)
T d1amua_          31 EQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV  101 (514)
T ss_dssp             HHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEE
Confidence            368999999999986    3     7999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhcccc
Q 007257           81 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  160 (611)
Q Consensus        81 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (611)
                      |+++.++.+++.++++.++++++|++......+.......     ........                     ......
T Consensus       102 ~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~~---------------------~~~~~~  155 (514)
T d1amua_         102 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEED---------------------TIKIRE  155 (514)
T ss_dssp             ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCCS---------------------TTTTSC
T ss_pred             EeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----cccccccc---------------------cccccc
Confidence            9999999999999999999999999988776654332211     11111110                     111112


Q ss_pred             cCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhh
Q 007257          161 NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR  240 (611)
Q Consensus       161 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~  240 (611)
                      ......+..++++++++|||||||.||+|.+||.++..........+     .....+++++..|++|..++...+.++.
T Consensus       156 ~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~l~  230 (514)
T d1amua_         156 GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASVWEMFMALL  230 (514)
T ss_dssp             CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHHHHHHHHHT
T ss_pred             cccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceecccccccccccccccc
Confidence            23334456789999999999999999999999999999988877776     7889999999999999999988888899


Q ss_pred             cCceEEEecC----ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 007257          241 RGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  316 (611)
Q Consensus       241 ~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (611)
                      .|+++++...    +....++.+..+.++.+..+|..+....                                      
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------  272 (514)
T d1amua_         231 TGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD--------------------------------------  272 (514)
T ss_dssp             TTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC--------------------------------------
T ss_pred             ccccccccccccccchhhhhhhhhhhhcccccceeeeccccc--------------------------------------
Confidence            9999888754    6678888999999999999887643210                                      


Q ss_pred             chHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCC--ccccCccCCCcc
Q 007257          317 SPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSV  394 (611)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~--~~~~~~~G~~~~  394 (611)
                                   ...+++++.++++|+++++++.+++.+  +..+++.||+||++.+++......  ....++.|.+.+
T Consensus       273 -------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (514)
T d1amua_         273 -------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQ  337 (514)
T ss_dssp             -------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECT
T ss_pred             -------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCccccccccee
Confidence                         012358999999999999999888765  778999999999999887666543  223356778889


Q ss_pred             CeeEEEeecCCCCCCCCCCCCCcEEEEecCCcccccCCChHhhhhhcc-------CCccccCceEEEccCCeEEEEeccC
Q 007257          395 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRKK  467 (611)
Q Consensus       395 ~~~v~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~dG~l~~~GR~~  467 (611)
                      +..+.+.| +++  ..++.|+.|||+|+||+++.||++++..+.+.|.       +|||+|||+|++|+||+|++.||.+
T Consensus       338 ~~~v~~~d-~~~--~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~  414 (514)
T d1amua_         338 NTQIYIVD-ENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRID  414 (514)
T ss_dssp             TEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGG
T ss_pred             eeeEeeec-ccc--eecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEeccc
Confidence            99999888 554  4556678999999999999999999999988872       6799999999999999999999999


Q ss_pred             CeEEcCCceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 007257          468 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  544 (611)
Q Consensus       468 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (611)
                      |+|++ +|++|+|.+||++|.+||+|.||+|++.++.   +.++|+|+++++.                  +.       
T Consensus       415 d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~------------------~~-------  468 (514)
T d1amua_         415 NQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------PL-------  468 (514)
T ss_dssp             GEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------CH-------
T ss_pred             CEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCC------------------CH-------
Confidence            99997 8999999999999999999999999997654   3899999988753                  21       


Q ss_pred             HHHHHHHHHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHH
Q 007257          545 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  593 (611)
Q Consensus       545 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  593 (611)
                       ++|+++++ .+|+.|++|..|+++++.      |+|++|||+|++|++
T Consensus       469 -~~l~~~~~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~R~~L~~  509 (514)
T d1amua_         469 -EQLRQFSS-EELPTYMIPSYFIQLDKM------PLTSNGKIDRKQLPE  509 (514)
T ss_dssp             -HHHHHHHH-HHSCGGGSCSEEEECSSC------CBCTTSSBCGGGSCC
T ss_pred             -HHHHHHHH-hhCCcccCceEEEEeCCC------CCCCCcChhHHhcCC
Confidence             23344443 569999999999998765      999999999998875

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=1.4e-61  Score=517.89  Aligned_cols=482  Identities=21%  Similarity=0.219  Sum_probs=380.8

Q ss_pred             ccccCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHhcCCEEee
Q 007257            2 SVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVP   81 (611)
Q Consensus         2 ~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~ql~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~~~   81 (611)
                      +|+++||++|+++.   ++.    +++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus        11 ~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vp   83 (503)
T d3cw9a1          11 AATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPAL   83 (503)
T ss_dssp             HHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEE
Confidence            68899999999987   321    78999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHhhcCccEEEEcchhHHHHhccccccccCccEEEEecCCcHHHHHHhhhCCCceeeHHHHHhccc--
Q 007257           82 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--  159 (611)
Q Consensus        82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  159 (611)
                      ++|.++++++.+++++++++++|++........  .... .....++.+                     .++.....  
T Consensus        84 i~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~i~~---------------------~~~~~~~~~~  139 (503)
T d3cw9a1          84 LNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQS-GSGARIIFL---------------------GDLVRDGEPY  139 (503)
T ss_dssp             ECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHT-TCCCEEEEH---------------------HHHEETTEEC
T ss_pred             eCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhh-ccccccccc---------------------hhhhhhhccc
Confidence            999999999999999999999999875432211  0111 112222222                     22211111  


Q ss_pred             --ccCCcCCCCCCCCeEEEEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHH-HH
Q 007257          160 --VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EE  236 (611)
Q Consensus       160 --~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~  236 (611)
                        ..........++++++++|||||||.||+|.++|.++...+......+   .......+++++.+|+.|..+... .+
T Consensus       140 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~  216 (503)
T d3cw9a1         140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLYHVVGFFAVLV  216 (503)
T ss_dssp             CCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTTSHHHHHTTHH
T ss_pred             ccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccccccccccccc
Confidence              122333456789999999999999999999999999998887765443   224567789999999988887776 45


Q ss_pred             HHhhcCceEEEecC-ChHHHHHHHhhhcCeEEecchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcCCCCC
Q 007257          237 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE  315 (611)
Q Consensus       237 ~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (611)
                      .+...++.+++... ++..+...+..++++++..+|..+..+.........                             
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  267 (503)
T d3cw9a1         217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS-----------------------------  267 (503)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT-----------------------------
T ss_pred             cccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccc-----------------------------
Confidence            55666777666665 999999999999999999999998877653322111                             


Q ss_pred             cchHHHHHhhHHHHHHcCCceeEEEEecCCCCHHHHHHHHHHcCCceeeccccCCCCCceeeccCCCccccCccCCCccC
Q 007257          316 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY  395 (611)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~G~~~~~  395 (611)
                                    ...+++||.+++||++++++...++...++..+.+.||++|++..+.......... ...+.+.+.
T Consensus       268 --------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~-~~~~~~~~~  332 (503)
T d3cw9a1         268 --------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE-MAPGFFSEV  332 (503)
T ss_dssp             --------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE-EBCCTTCCE
T ss_pred             --------------cccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc-ccccccccc
Confidence                          11225899999999999999999999999999999999999998877766554332 333333333


Q ss_pred             eeEEEeecCCCCCCCCCCCCCcEEEEec-CCcccccCCChHhhhhhccCCccccCceEEEccCCeEEEEeccCCeEEcCC
Q 007257          396 SELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQ  474 (611)
Q Consensus       396 ~~v~i~~~~~~~~~~~~~~~~Gel~v~~-~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~~  474 (611)
                      ....+.   ......++.|+.|++.+.+ +....+|+++++.+.+.|.+|||+|||+|++++||.|++.||.||+|++ +
T Consensus       333 ~~~~~~---~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~-~  408 (503)
T d3cw9a1         333 RIVRIG---GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIIS-G  408 (503)
T ss_dssp             EEECTT---SCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSCCEEE-T
T ss_pred             eeeeee---cccCcccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcCCeEEE-C
Confidence            333322   3333566678889887776 5666789999999999999999999999999999999999999999997 8


Q ss_pred             ceecCcHHHHHHHhcCcCcceEEEEecCCC---CeEEEEEecChHHHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 007257          475 GEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  551 (611)
Q Consensus       475 G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  551 (611)
                      |++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++.+..        .        +        .++++++
T Consensus       409 G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~--------~--------~--------~~~l~~~  464 (503)
T d3cw9a1         409 GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET--------L--------S--------ADALDTF  464 (503)
T ss_dssp             TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--------C--------C--------HHHHHHH
T ss_pred             CEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCC--------C--------C--------HHHHHHH
Confidence            999999999999999999999999997644   47999999876431        0        1        1344555


Q ss_pred             HHhCCCCCcceeeeEEEecCCCCCCCCccccccccchHHHHHHH
Q 007257          552 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  595 (611)
Q Consensus       552 ~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  595 (611)
                      +++.+||.|++|+.|+++++.      |+|++||++|++|++++
T Consensus       465 ~~~~~l~~~~~P~~i~~v~~~------P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         465 CRSSELADFKRPKRYFILDQL------PKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             HHHSSSCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHH
T ss_pred             HHhcCCCCCCCccEEEEECCC------CcCCCcCccHHHHHHhc
Confidence            556789999999999988664      99999999999998875

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=81.66  E-value=1.8  Score=42.75  Aligned_cols=97  Identities=11%  Similarity=0.039  Sum_probs=72.7

Q ss_pred             EEEecCCCCCCceeeeccHhHHHhhhhcccccccccCCCCCCcEEEEecchhhHHHHHHHHHHhhcCceEEEecC--ChH
Q 007257          176 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLN  253 (611)
Q Consensus       176 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~--~~~  253 (611)
                      +.++.+.++    ..+|+..+...+..+...+...  ++.++|++...++-.. -.....+.++..|+..+.++.  +..
T Consensus        37 ~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~--Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~  109 (541)
T d1lcia_          37 IAFTDAHIE----VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNER  109 (541)
T ss_dssp             EEEEETTTC----CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHH
T ss_pred             EEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHc--CcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHH
Confidence            344555444    4579999988888877776543  6889999988877652 223345566788998888876  889


Q ss_pred             HHHHHHhhhcCeEEecchHHHHHHHH
Q 007257          254 ALRDDLMELKPTLLAGVPRVFEKIHE  279 (611)
Q Consensus       254 ~~~~~i~~~~~t~l~~~p~~~~~l~~  279 (611)
                      .+...++..++++++.....+..+.+
T Consensus       110 ~l~~~l~~~~~~~vi~~~~~~~~~~~  135 (541)
T d1lcia_         110 ELLNSMNISQPTVVFVSKKGLQKILN  135 (541)
T ss_dssp             HHHHHHHHHCCSEEEECGGGHHHHHH
T ss_pred             HHHHHHHhccceEEeeeccccccchh
Confidence            99999999999999999988776654