Citrus Sinensis ID: 007269

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610
MSSYCKFCYYYYYFLSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLEGPPLPPCNSSNNN
ccccccccEEEccccccccEEEEEEcccccccccccEEEEEccEEEEEEccccEEEEEEEEEEccccccccccccEEEEEEEEccccEEEEEEEEEccccccccccccEEEEEEEcccccccEEEEcccccccccccccccccccEEccccEEEEccccccccccEEEcccEEEEccccccEEEEEEccccEEEEEEccccccccccccEEcccccccccEEEEEEEEEcccccEEEEcccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEcccccccccccccEEEEcccccccccccccccccEEEEEEcccccEEEccccccEEEEEEEEccEEEEEEEEEEEEEEEccEEEEcccEEEccccccccEEEccccccccccccccccccccccccccccHHHHHcHHHHHHHccccccccEEEEcccccccccccEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEccccccccEEEEcccccccccccccccccccEEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEEcccccccEEEEEEEEEEccccccccccccc
cccccHEEEEEccccccccEEEEEEcccccccccccEEEEEcEEEEEEEEcccEEEEEEEEccccccccccccEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEcccccccEEEEccccccccccccccccccccEEEcccEEEEcccccccccccEcccEEEccccccccEEEEEEccccEEEEEEEcccccccccccHcHcHccccccEEEEEEcccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEccccccEEEEEcccEEEEEEEccccEEEEccccccEEEEEEEEcccEEEEEEccEEEEEcccEEEcccEEEEccccccEEEEEccccccccccccccccccHHcHHHcccccHHHHHcHHHHHHHHcccccEEEEEccccccccccEEEEEEEccccccccccEEEEEEcccccccccEEEEEEEEHHHcccccEEEEccccccccccccccccccEEEEccEEccEEEEEEEEcHHHEEccccEEEEEEEcccccccccEEEEEEEEcccccccccccccc
mssyckfcYYYYYFLSTYSYwdlvwskpgkkgtkgtldrieaTNFTVIVENEEQVEVSFTRLwnsslegqvvplnIDKRFImlhgssgfyTYAIFEHlgewpafnidNIRMAFKLNkdkfhfmsiadnrqrlvplpddrlpgrgqvlaypeavllvnpvepefkgevddkylyscksqdirvhgwicadppvgfwqitpsiesrsagplkqylashvgptslaLFHSVHYSGADLilrfghsepwkkvfGPIFIYLnslsneddplLLWEDAKQQMIFEvqswpydfpaskdfpqsdqrgtlhgrllvedRYINMdyiaangayvglappgnagswqreCKGYQFWaranadgyfyidhirtgnyslyafvpgfigdykydfnitiiegsyidigdlvykpprngptlweigipdryaaefyvpdpdpkyinKLYVNHTDRYRQYGLWeryaelypdedliyIVNQSDYRKDWFFAQVtrkkdnqtyegTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRindpstepplfstgqigkentiaRHGIYGLYwlfnvdvpgalfvkgnnntIYLTQalsgspfrgvmydyirlegpplppcnssnnn
MSSYCKFCYYYYYFLSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVtrkkdnqtyegtTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRIndpstepplfstgqigkenTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLtqalsgspfRGVMYDYIRLEgpplppcnssnnn
MssyckfcyyyyyflstysyWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLEGpplppcnssnnn
***YCKFCYYYYYFLSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPAS*********GTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRIND******LFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRL**************
*****KF*YYYYYFLSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLE*************
MSSYCKFCYYYYYFLSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLEGPPLPPCNSSNNN
*SSYCKFCYYYYYFLSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLEGPPLPP*******
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSSYCKFCYYYYYFLSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLEGPPLPPCNSSNNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query610 2.2.26 [Sep-21-2011]
Q8RJP2578 Rhamnogalacturonate lyase yes no 0.783 0.826 0.239 5e-24
Q5AZ85660 Rhamnogalacturonate lyase yes no 0.796 0.736 0.230 3e-11
B8N5T6663 Probable rhamnogalacturon N/A no 0.798 0.734 0.217 8e-11
A5ABH4706 Probable rhamnogalacturon yes no 0.750 0.648 0.216 1e-09
Q0C7K7660 Probable rhamnogalacturon N/A no 0.522 0.483 0.223 3e-09
A1D144658 Probable rhamnogalacturon N/A no 0.509 0.472 0.212 0.0001
Q4WR79658 Probable rhamnogalacturon no no 0.509 0.472 0.212 0.0001
B0XPA2658 Probable rhamnogalacturon N/A no 0.509 0.472 0.212 0.0001
Q5B5P1 1041 Probable rhamnogalacturon no no 0.252 0.147 0.272 0.0008
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1 Back     alignment and function desciption
 Score =  113 bits (282), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 138/577 (23%), Positives = 225/577 (38%), Gaps = 99/577 (17%)

Query: 35  GTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAI 94
           G ++        VI +  +QV +++       ++ Q   L ++   IM    SG Y+Y +
Sbjct: 89  GGVNEFVPERLEVIKQTPDQVHLAY-------IDDQNGKLRLEYHLIMTRDVSGLYSYVV 141

Query: 95  FEHLGEWPAFNIDNIRMAFKLNKDKFH--FMSIADNRQRLVPLPDDRLPGRGQVLAYPEA 152
             + G  P   +  +R  ++ +  +    F SI                 RG  L Y E 
Sbjct: 142 AANTGSAP-VTVSELRNVYRFDATRLDTLFNSIR----------------RGTPLLYDEL 184

Query: 153 VLLVNPVEPEFK---GEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPL 209
             L    +  ++   G V  KY ++   ++ R   W       G W +  S E  S   L
Sbjct: 185 EQLPKVQDETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWMVPASGEYYSGDAL 242

Query: 210 KQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLW 269
           KQ L  H     L      H+   D++ + G    ++K++GP  +Y+N  ++ +    L 
Sbjct: 243 KQELLVHQDAIILNYLTGSHFGTPDMVAQPG----FEKLYGPWLLYINQGNDRE----LV 294

Query: 270 EDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAP 329
            D  ++   E  SWPY +     +P+  QR T+ GRL  E              +  +  
Sbjct: 295 ADVSRRAEHERASWPYRWLDDARYPR--QRATVSGRLRTE------------APHATVVL 340

Query: 330 PGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEG 389
             +A ++  +  GY F AR N DG F + ++  G Y L A+  G             +EG
Sbjct: 341 NSSAENFDIQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIGLLAQQTVRVEG 400

Query: 390 SYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWE 449
               +G +  + P   P  W IG  DR A EF                  D+ RQY    
Sbjct: 401 KKTRLGQIDARQP--APLAWAIGQADRRADEF---------------RFGDKPRQY---- 439

Query: 450 RYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKL 509
           R+    P  DL + + +S  RKDW++AQ          +  +W I F      +   Y L
Sbjct: 440 RWQTEVP-ADLTFEIGKSRERKDWYYAQT---------QPGSWHILFNTRTPEQP--YTL 487

Query: 510 RLALASAHVSVLQVRINDP----STEPPLFSTGQIGKENTIARHGIY-GLYWLFNVDVP- 563
            +A+A+A  + +    + P         L +T +   + +I R  +  G Y   ++ +P 
Sbjct: 488 NIAIAAASNNGMTTPASSPQLAVKLNGQLLTTLKYDNDKSIYRGAMQSGRYHEAHIPLPA 547

Query: 564 GALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLEGPP 600
           GAL   GN  T+ L   +       VMYD I L   P
Sbjct: 548 GALQQGGNRITLELLGGM-------VMYDAITLTETP 577
Degrades the rhamnogalacturonan I (RG-I) backbone of pectin. Is required for the full virulence of E.chrysanthemi strain 3937 as it is involved in rotting of plant tissue.
Dickeya dadantii (strain 3937) (taxid: 198628)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB PE=2 SV=2 Back     alignment and function description
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query610
356515685643 PREDICTED: probable rhamnogalacturonate 0.970 0.920 0.698 0.0
356510088643 PREDICTED: rhamnogalacturonate lyase B-l 0.970 0.920 0.696 0.0
357466849651 Rhamnogalacturonate lyase [Medicago trun 0.950 0.890 0.703 0.0
359492972643 PREDICTED: probable rhamnogalacturonate 0.957 0.908 0.702 0.0
255572842642 lyase, putative [Ricinus communis] gi|22 0.963 0.915 0.694 0.0
302142095656 unnamed protein product [Vitis vinifera] 0.959 0.891 0.684 0.0
255572850639 lyase, putative [Ricinus communis] gi|22 0.950 0.907 0.683 0.0
224063367640 predicted protein [Populus trichocarpa] 0.955 0.910 0.678 0.0
255572848 755 lyase, putative [Ricinus communis] gi|22 0.950 0.768 0.689 0.0
224063361626 predicted protein [Populus trichocarpa] 0.947 0.923 0.696 0.0
>gi|356515685|ref|XP_003526529.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/593 (69%), Positives = 486/593 (81%), Gaps = 1/593 (0%)

Query: 16  STYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLN 75
           S   YWDLVWS P   GT GT D I+ T F V+VENE+QVE+SFTR W+ S EG++VPLN
Sbjct: 52  SNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVVVENEDQVELSFTRTWDVSREGKLVPLN 111

Query: 76  IDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPL 135
           IDKRF+ML GSSGFY+YAI+EHL EWPAFN+D  R+AFKL KDKFH+M++ADNRQR +PL
Sbjct: 112 IDKRFVMLRGSSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPL 171

Query: 136 PDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFW 195
           PDDRLP +G+ LAYPEAVLLVNP+EPE KGEVDDKY YSC ++D +VHGWIC DP VGFW
Sbjct: 172 PDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFW 231

Query: 196 QITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIY 255
            ITPS E RS GPLKQ L SHVGPT+LA+F S HYSG DL+ +F   E WKKVFGP+FIY
Sbjct: 232 LITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNSGEAWKKVFGPVFIY 291

Query: 256 LNSLSNEDDPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINM 315
           LNS  +  DPL LWEDAK QM  EVQSWPY FP S+DF + D RG + GRLLV +RYIN 
Sbjct: 292 LNSPYDGTDPLKLWEDAKLQMSVEVQSWPYSFPESEDFAKWDDRGNVSGRLLVRERYIND 351

Query: 316 DYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFI 375
           DY++A GAYVGLAPPG+ GSWQRECK YQFWARA+ DGYF + +IR G+Y++YA+VPGFI
Sbjct: 352 DYVSAKGAYVGLAPPGDVGSWQRECKNYQFWARADDDGYFSVSNIRAGDYNVYAWVPGFI 411

Query: 376 GDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLY 435
           GDYKYD  I I EG  ID+GDLVY+PPR+GPTLWEIGIPDR AAEFYVPDP+PKYINKLY
Sbjct: 412 GDYKYDVVINITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLY 471

Query: 436 VNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIK 495
           VNH D++RQYGLWERYAELYPD+DLIY +  SDY KDWFFAQVTRKKD+ TY+GTTWQIK
Sbjct: 472 VNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIK 531

Query: 496 FELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLY 555
           F+LD+VN+S+ YKLR+ALASA +S LQVR+N+P    PLFS+G IG++N+IARHGI+GLY
Sbjct: 532 FKLDSVNKSSSYKLRVALASATLSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLY 591

Query: 556 WLFNVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLEGPPLPPCNSSN 608
           WL+NV +PG   V+G +NTI+LTQ     PF+ +MYDYIRLE PP    N  N
Sbjct: 592 WLYNVGIPGTQLVEG-DNTIFLTQTRGNGPFQAIMYDYIRLEAPPSSSFNKKN 643

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356510088|ref|XP_003523772.1| PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|357466849|ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatula] gi|355492757|gb|AES73960.1| Rhamnogalacturonate lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|359492972|ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572842|ref|XP_002527353.1| lyase, putative [Ricinus communis] gi|223533272|gb|EEF35025.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142095|emb|CBI19298.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572850|ref|XP_002527357.1| lyase, putative [Ricinus communis] gi|223533276|gb|EEF35029.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224063367|ref|XP_002301114.1| predicted protein [Populus trichocarpa] gi|222842840|gb|EEE80387.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255572848|ref|XP_002527356.1| lyase, putative [Ricinus communis] gi|223533275|gb|EEF35028.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224063361|ref|XP_002301112.1| predicted protein [Populus trichocarpa] gi|222842838|gb|EEE80385.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query610
TAIR|locus:2024427617 AT1G09890 [Arabidopsis thalian 0.937 0.927 0.664 1.4e-222
TAIR|locus:2024417631 AT1G09880 [Arabidopsis thalian 0.942 0.911 0.654 8.2e-218
TAIR|locus:2136007646 AT4G24430 [Arabidopsis thalian 0.945 0.893 0.618 6e-206
TAIR|locus:2024331675 AT1G09910 [Arabidopsis thalian 0.939 0.848 0.610 7.7e-206
TAIR|locus:2066040677 AT2G22620 [Arabidopsis thalian 0.934 0.841 0.583 5e-186
TAIR|locus:2121090678 AT4G37950 [Arabidopsis thalian 0.931 0.837 0.551 1.1e-174
TAIR|locus:2121095667 AT4G38030 [Arabidopsis thalian 0.926 0.847 0.547 8e-172
TAIR|locus:2200390248 AT1G65210 "AT1G65210" [Arabido 0.298 0.733 0.570 1.7e-52
ASPGD|ASPL0000007043660 rglB [Emericella nidulans (tax 0.690 0.637 0.242 3e-14
UNIPROTKB|Q5AZ85660 rglB "Rhamnogalacturonate lyas 0.690 0.637 0.242 3e-14
TAIR|locus:2024427 AT1G09890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2149 (761.5 bits), Expect = 1.4e-222, P = 1.4e-222
 Identities = 385/579 (66%), Positives = 472/579 (81%)

Query:    21 WDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRF 80
             WDLVW   G  GT G  D I+ +NF VIV+NEEQ+E+SFTR W+ S EG+ VPLNIDKRF
Sbjct:    41 WDLVW---GGSGTAGGFDVIKGSNFEVIVKNEEQIELSFTRKWDPSQEGKAVPLNIDKRF 97

Query:    81 IMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRL 140
             +ML GSSGFYTYAI+EHL EWPAF++   R+AFKL K+KFH+M++ D+RQR +PLPDDRL
Sbjct:    98 VMLSGSSGFYTYAIYEHLKEWPAFSLAETRIAFKLRKEKFHYMAVTDDRQRFMPLPDDRL 157

Query:   141 PGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPP-VGFWQITP 199
             P RGQ LAYPEAVLLVNP+E +FKGEVDDKY YSC+++DI VHGWIC + P VGFW ITP
Sbjct:   158 PDRGQALAYPEAVLLVNPLESQFKGEVDDKYQYSCENKDITVHGWICTEQPSVGFWLITP 217

Query:   200 SIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSL 259
             S E R+ GP KQ L SHVGPT+LA+F S HY+G DL+ +F   E WKKVFGP+F+YLNS 
Sbjct:   218 SHEYRTGGPQKQNLTSHVGPTALAVFISAHYTGEDLVPKFSEGEAWKKVFGPVFVYLNSS 277

Query:   260 SNED-DPLLLWEDAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYI 318
             +++D DPL LW+DAK QM  E +SWPY FPAS D+ +++QRG + GRLLV+DRY++ D+I
Sbjct:   278 TDDDNDPLWLWQDAKSQMNVEAESWPYSFPASDDYVKTEQRGNVVGRLLVQDRYVDKDFI 337

Query:   319 AANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDY 378
             AAN  YVGLA PG AGSWQRECK YQFW R + +G+FYI  IR G Y+LYA++PGFIGDY
Sbjct:   338 AANRGYVGLAVPGAAGSWQRECKEYQFWTRTDEEGFFYISGIRPGQYNLYAWIPGFIGDY 397

Query:   379 KYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNH 438
             KYD  ITI  G YI + DLVY+PPRNG TLWEIG PDR AAEFYVPDP+PKYIN LY NH
Sbjct:   398 KYDDVITITSGCYIYVEDLVYQPPRNGATLWEIGFPDRSAAEFYVPDPNPKYINNLYQNH 457

Query:   439 TDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFEL 498
              DR+RQYGLWERYAELYPD+DL+Y+V  SDYRKDWF+AQVTRKKDN+TY+GTTWQIKFEL
Sbjct:   458 PDRFRQYGLWERYAELYPDKDLVYVVGSSDYRKDWFYAQVTRKKDNKTYQGTTWQIKFEL 517

Query:   499 DNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLF 558
              N++++  Y LR+A+ASA  S LQ+R+N+ +  P +F++G IG++N+IARHGI+GLYWLF
Sbjct:   518 KNIDKNHSYTLRVAIASATFSELQIRVNNANASP-MFTSGLIGRDNSIARHGIHGLYWLF 576

Query:   559 NVDVPGALFVKGNNNTIYLTQALSGSPFRGVMYDYIRLE 597
             NV+V G+  ++G N T++LTQ  S SPF+G+MYDYIR E
Sbjct:   577 NVEVAGSKLLEGEN-TLFLTQPRSTSPFQGIMYDYIRFE 614
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2024417 AT1G09880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136007 AT4G24430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024331 AT1G09910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066040 AT2G22620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121090 AT4G37950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121095 AT4G38030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200390 AT1G65210 "AT1G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007043 rglB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AZ85 rglB "Rhamnogalacturonate lyase B" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015069001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (643 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query610
pfam06045220 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate ly 1e-72
cd10320265 cd10320, RGL4_N, N-terminal catalytic domain of rh 3e-56
cd10317161 cd10317, RGL4_C, C-terminal domain of rhamnogalact 2e-48
cd1031692 cd10316, RGL4_M, Middle domain of rhamnogalacturon 1e-29
>gnl|CDD|218870 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate lyase family Back     alignment and domain information 
 Score =  232 bits (593), Expect = 1e-72
 Identities = 90/149 (60%), Positives = 108/149 (72%), Gaps = 4/149 (2%)

Query: 19  SYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDK 78
            YWD+VW+ PG K      D I  T F VI ++EEQVE+SF R W+       VPLNIDK
Sbjct: 76  GYWDVVWNFPGVKSIF---DVIVGTEFEVITQDEEQVELSFIRTWDP-SRDNGVPLNIDK 131

Query: 79  RFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDD 138
           R IML G SGFY+YAIFEHL  WPA N+   R+ FKLNKDKFH+M+I+D+RQR++P PDD
Sbjct: 132 RLIMLRGVSGFYSYAIFEHLSGWPAVNLSETRLVFKLNKDKFHYMAISDDRQRIMPRPDD 191

Query: 139 RLPGRGQVLAYPEAVLLVNPVEPEFKGEV 167
           R   RG  LAYPEAVLLV+P EP+F+GEV
Sbjct: 192 RDIPRGAPLAYPEAVLLVDPQEPQFRGEV 220

Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. Length = 220
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199905 cd10317, RGL4_C, C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 610
PF06045203 Rhamnogal_lyase: Rhamnogalacturonate lyase family; 100.0
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 100.0
PF09284249 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPr 100.0
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 99.87
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.82
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.46
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 98.01
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.99
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.93
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.73
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.67
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.59
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.24
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.58
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 95.41
PRK15036137 hydroxyisourate hydrolase; Provisional 95.32
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 94.39
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 93.59
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 93.57
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 93.34
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 92.51
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 92.32
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 91.75
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 91.22
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 90.46
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 90.35
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 89.58
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 89.34
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 89.15
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 88.96
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 88.93
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 88.27
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 87.76
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 87.63
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 87.63
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 86.51
smart00606129 CBD_IV Cellulose Binding Domain Type IV. 84.84
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 84.55
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 84.38
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 83.93
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 83.5
cd03461277 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca 82.36
PF14900235 DUF4493: Domain of unknown function (DUF4493) 82.16
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-47  Score=372.16  Aligned_cols=150  Identities=65%  Similarity=1.219  Sum_probs=147.1

Q ss_pred             eeCcceEEEeecCCCcCCCCCceeeeccceEEEEEecCCEEEEEEEeeecCCCCCCccccceeEEEEEecCCceEEEEEE
Q 007269           15 LSTYSYWDLVWSKPGKKGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAI   94 (610)
Q Consensus        15 ~~~~gywd~~w~~~g~~~~~~~~~~~~gt~~~vi~~~~~~i~Vs~~~~~~~~~~g~~~~l~l~~~~v~r~G~sgiY~y~~   94 (610)
                      +.+|||||++|+.||+   +++|++++||+|+||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|
T Consensus        54 e~nrGYwD~~W~~~G~---~~~~~~~~gt~f~Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI  130 (203)
T PF06045_consen   54 ENNRGYWDLVWNEPGS---KGKFDRIKGTEFSVIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAI  130 (203)
T ss_pred             ccCCceEEEecccCCc---cccccccCCcEEEEEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEE
Confidence            4789999999999998   7799999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCCCCccceEEEEEcCCCCcccceeccccccccCCCCCCCCCCCceeeecceEEeeCCCCCCCCcEE
Q 007269           95 FEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEV  167 (610)
Q Consensus        95 ~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~r~~~mP~p~d~~~~~g~~l~~~ea~~l~~~~~~~~~G~~  167 (610)
                      ++|+++||+++|+|+|+||||++++|++|+++|+|||.||+|+||++++|++|+||||++|++|+||+++|||
T Consensus       131 ~e~~~~~Pa~~l~q~R~vfKl~~d~F~ymai~d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev  203 (203)
T PF06045_consen  131 FEHPAGWPAFDLGQTRIVFKLNKDKFHYMAISDDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV  203 (203)
T ss_pred             EecCCCCCCcccceeEEEEECCccccceEEecccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986

This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>smart00606 CBD_IV Cellulose Binding Domain Type IV Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates Back     alignment and domain information
>PF14900 DUF4493: Domain of unknown function (DUF4493) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query610
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 1e-103
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Length = 508 Back     alignment and structure
 Score =  321 bits (824), Expect = e-103
 Identities = 83/572 (14%), Positives = 156/572 (27%), Gaps = 114/572 (19%)

Query: 31  KGTKGTLDRIEATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFY 90
                 +     +      ++ + ++V+                 + +  ++ +G    +
Sbjct: 45  SSQGSHIGSGLGSATVTATQSGDYIKVTCV------------TDTLTQYMVVHNGDPIIH 92

Query: 91  TYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLVPLPDDRLPGRGQVLAYP 150
                         +I  +R   +LN D                 P++   G     A  
Sbjct: 93  MATYITAE-----PSIGELRFIARLNSDLL---------------PNEEPFGDVSTTADG 132

Query: 151 EAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESRSAGPLK 210
            A+   +        E   K+  S +  D + H             I    ES S GP  
Sbjct: 133 TAIEGSDVFLVG--SETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSGGPFH 188

Query: 211 QYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWE 270
           + + S+ G +  AL+  ++                  + GP  +Y +       P    +
Sbjct: 189 RDINSNNGGSYNALYWYMNSGHVQT------ESYRMGLHGPYSMYFSR---SGTPSTSID 239

Query: 271 DAKQQMIFEVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPP 330
            +            +     K +  +  RG + G                       A  
Sbjct: 240 TSF-----------FADLDIKGYVAASGRGKVAGT-------------------ASGADS 269

Query: 331 GNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDYKYDFNITIIEGS 390
                        Q+W   ++ G F    ++ G Y++  +   +        ++T+  GS
Sbjct: 270 SMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYA---VATSSVTVSAGS 326

Query: 391 YIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWER 450
                  +    + G T+++IG  D     F                H    R       
Sbjct: 327 TTTKN--ISGSVKTGTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSR------- 370

Query: 451 YAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLR 510
              +     L Y V  S    D+  A                 IKF   +    A   LR
Sbjct: 371 ---MSSWGPLTYTVGSSALT-DFPMAVFKSV-------NNPVTIKFTATSAQTGA-ATLR 418

Query: 511 LALASAHVSV-LQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVK 569
           +    +      Q  IN  +   P   T        + R    GL  +++V +P    V 
Sbjct: 419 IGTTLSFAGGRPQATINSYTGSAPAAPTNLDS--RGVTRGAYRGLGEVYDVSIPSGTIVA 476

Query: 570 GNNNTIYLTQ--ALSGSPF--RGVMYDYIRLE 597
           G  NTI +      SG  +     ++D + L 
Sbjct: 477 G-TNTITINVISGSSGDTYLSPNFIFDCVELF 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query610
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 100.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 97.93
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.83
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.78
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.76
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 96.41
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 96.2
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 96.03
3qec_A150 Putative carbohydrate binding protein; suramin bin 96.03
2bgo_A140 Endo-B1,4-mannanase 5C; carbohydrate binding prote 95.83
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 95.46
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 95.15
2w3j_A145 Carbohydrate binding module; sugar-binding protein 95.13
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 93.31
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 92.86
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 90.34
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 90.0
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 89.06
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 88.99
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 88.28
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 88.03
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 87.97
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 86.55
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 86.52
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 85.99
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 85.28
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 84.46
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 84.45
3o5u_A257 Chlorocatechol 1,2-dioxygenase; beta barrel,oxidor 83.49
3t63_A200 3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha 82.02
3hhy_A280 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, 81.9
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 81.35
2h4e_A127 Transthyretin; amyloid, sulfite, familial amyloido 80.62
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
Probab=100.00  E-value=9.7e-119  Score=984.75  Aligned_cols=438  Identities=19%  Similarity=0.258  Sum_probs=389.3

Q ss_pred             EEEEEecCCEEEEEEEeeecCCCCCCccccceeEEEEEecCCceEEEEEEeeccCCCCCCCccceEEEEEcCCCCcccce
Q 007269           45 FTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDKRFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMS  124 (610)
Q Consensus        45 ~~vi~~~~~~i~Vs~~~~~~~~~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~  124 (610)
                      ++++ +++++|+|||++.            +||||||||+|++|||||+++++     +++|+|+|+|||||+++|++. 
T Consensus        60 ~~~~-~~~~~i~vs~~~~------------~l~~~~v~~~g~sg~Y~y~~~~~-----~~~lge~R~v~Rl~~~~f~~~-  120 (508)
T 1nkg_A           60 VTAT-QSGDYIKVTCVTD------------TLTQYMVVHNGDPIIHMATYITA-----EPSIGELRFIARLNSDLLPNE-  120 (508)
T ss_dssp             EEEE-EETTEEEEEEECS------------SEEEEEEEETTCCEEEEEEEESS-----CCTTSCEEEEEEECTTTCCEE-
T ss_pred             EEEE-ecCCEEEEEEEeC------------CceEEEEEeCCCceEEEEEeecc-----CCCCCceEEEEEcChhhCCCc-
Confidence            4443 3589999999983            89999999999999999999975     679999999999999999762 


Q ss_pred             eccccccccCCCCCCCCCCCceeeecceEEeeCCCCCCCCcEEeeeeeecccccccceEEEEeCCCCeEEEEEcCCCccc
Q 007269          125 IADNRQRLVPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQDIRVHGWICADPPVGFWQITPSIESR  204 (610)
Q Consensus       125 ~~d~r~~~mP~p~d~~~~~g~~l~~~ea~~l~~~~~~~~~G~~~sKY~ys~~~~D~~vhG~~s~g~~vG~W~I~ps~E~~  204 (610)
                           +|+||+|+++   .+++ +++|++...       +|+++||||||+++||++||||+  +++||||||+||+||+
T Consensus       121 -----~r~~~~p~~~---~~~~-v~~~d~~~l-------~G~~~~KY~~s~~~~D~~vhG~~--~~~vG~w~I~~s~E~~  182 (508)
T 1nkg_A          121 -----EPFGDVSTTA---DGTA-IEGSDVFLV-------GSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESS  182 (508)
T ss_dssp             -----ETTGGGGCCT---TCEE-EETTTEEEE-------TTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTC
T ss_pred             -----cccCCCCccc---cCcE-eeeccceee-------CCEEccceeccccceecceEEEE--CCCeEEEEEcCCcccc
Confidence                 6999999875   5666 466655433       79999999999999999999999  4999999999999999


Q ss_pred             cCCCceecccccCCC---cEEEEEeeceecccceeeecCCCCCcceeeeeEEEEEeCCCCCCCcchhHHHHHHHHHhhcc
Q 007269          205 SAGPLKQYLASHVGP---TSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIFEVQ  281 (610)
Q Consensus       205 sGGPlkqdL~~h~g~---~~l~y~~s~Hy~g~~~~~~~~~Ge~w~kv~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~E~~  281 (610)
                      +||||||||++|+||   ++||||+|+|+++++++         +|||||||||||+|++++                 +
T Consensus       183 sGGP~kqdL~~h~~~~~~~~~~y~~s~H~~t~~~~---------~g~~GP~~~y~n~g~~~~-----------------~  236 (508)
T 1nkg_A          183 SGGPFHRDINSNNGGSYNALYWYMNSGHVQTESYR---------MGLHGPYSMYFSRSGTPS-----------------T  236 (508)
T ss_dssp             SSCTTCBCCCEEECSSCEEEEEEEECSTTCCSCCC---------CEEEEEEEEEEESSCCCC-----------------S
T ss_pred             cCCCcchhhhccCCcccceeeeeEeeccccccccc---------ccccccEEEEECCCCCCC-----------------C
Confidence            999999999999999   89999999999888664         379999999999998863                 6


Q ss_pred             CCCCCCCCC---CCCCCCCCCeEEEEEEEeccccccccccccCccEEEecCCCCCCCcccccccceeEEEECCccceEeC
Q 007269          282 SWPYDFPAS---KDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYID  358 (610)
Q Consensus       282 ~Wpysf~~s---~~y~~~~qRGtVsG~l~~~d~~~~~~~~pA~~a~V~La~~~~~gswq~~~kgyQywt~td~~G~FtI~  358 (610)
                      +|||+|++|   ++|||+++||+|+|+|+  .       .|++...|++        |  ++|+|||||+||++|+|+|+
T Consensus       237 ~wpysf~~s~~~~~y~~~~~RGtVsG~V~--G-------~~~~~~avv~--------~--~~k~~qywt~td~~G~FtI~  297 (508)
T 1nkg_A          237 SIDTSFFADLDIKGYVAASGRGKVAGTAS--G-------ADSSMDWVVH--------W--YNDAAQYWTYTSSSGSFTSP  297 (508)
T ss_dssp             CCCCGGGGGTTCTTCCCGGGCBEEEEEEE--S-------SCTTSCEEEE--------E--ECSSCEEEEECCTTCEEECC
T ss_pred             CCCCccccccCccCCcCcccccEEEEEEc--C-------ccCCceEEEE--------E--cCCCceeEEEECCCCcEEeC
Confidence            999999999   99999999999999987  2       2334443444        2  57899999999999999999


Q ss_pred             CccCCceEEEEEEcceeceeeeeeeEEEeCCceeeecceEEeCCCCCCCeeEEeecCCCccceecCCCCccccccccccC
Q 007269          359 HIRTGNYSLYAFVPGFIGDYKYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNH  438 (610)
Q Consensus       359 nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~lg~l~~~~~~~g~~LweIGipDrta~eF~~~d~~~~~~n~l~~~h  438 (610)
                      +||||+|+|+||++|+   ...+.+|+|++|++++++ |+|+++ ++++|||||+|||+|.||++||+.+ +      ||
T Consensus       298 ~V~pGtY~L~a~~~G~---~~~~~~VtV~aG~t~~l~-i~~~~~-~g~~iW~IG~pDrta~eF~~~d~~~-~------~h  365 (508)
T 1nkg_A          298 AMKPGTYTMVYYQGEY---AVATSSVTVSAGSTTTKN-ISGSVK-TGTTIFKIGEWDGQPTGFRNAANQL-R------MH  365 (508)
T ss_dssp             CBCSEEEEEEEEETTE---EEEEEEEEECTTCEEECC-EECCCC-CCSEEEEEECSSSSCTTSBTHHHHT-T------SC
T ss_pred             CcCCceEEEEEEECce---EEEEeEEEEcCCCeeEee-eEEecC-CCCeeEEeeCCCCCchhhcCCCccc-c------cC
Confidence            9999999999999987   366778999999999996 999877 7999999999999999999998432 2      39


Q ss_pred             cchhhhchhhhhhcccCCCCCeEEEeeecCCCCCeeeEEEeecCCCCcCCCceEEEEEEecCCCCcceEEEEEeeecc-C
Q 007269          439 TDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASA-H  517 (610)
Q Consensus       439 p~~~R~yglW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~  517 (610)
                      |+|+||| +|+         ||+||||+|++ +|||||||+.       .+++|+|+|+|+++| .++|||||+||+| +
T Consensus       366 p~~~r~~-~W~---------~l~ytVG~S~~-~Dw~ya~~~~-------~~~~w~I~F~l~~~~-~~~~tLri~la~a~a  426 (508)
T 1nkg_A          366 PSDSRMS-SWG---------PLTYTVGSSAL-TDFPMAVFKS-------VNNPVTIKFTATSAQ-TGAATLRIGTTLSFA  426 (508)
T ss_dssp             TTCTTSC-CCC---------SCEEETTTSCG-GGSBSEEETT-------TTCCEEEEEEECGGG-CSCEEEEEEEEEEET
T ss_pred             cchhccc-ccC---------CeEEEeCcCch-hcCCeEEECC-------CCCcEEEEEEcCccc-CCceEEEEEehhhcc
Confidence            9999999 894         49999999999 7999999964       469999999999987 6799999999998 6


Q ss_pred             CceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEeecCceecCCceEEEEEEeccCC--CCc--eEEEEE
Q 007269          518 VSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSGS--PFR--GVMYDY  593 (610)
Q Consensus       518 ~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~~NtI~lt~~~g~s--~f~--gvmyD~  593 (610)
                      ++++||+|||+...  ++.++.+++||||+||++||+|++++|+||+++|++|+ |+|+|+|+++++  +|+  +|||||
T Consensus       427 ~~~~qV~VN~~~~~--~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~-NtI~lt~~~~s~~~~fls~~vmyD~  503 (508)
T 1nkg_A          427 GGRPQATINSYTGS--APAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGT-NTITINVISGSSGDTYLSPNFIFDC  503 (508)
T ss_dssp             TCEEEEEETTEECC--CCCCCCCCCSCCGGGTCCCSCCCEEEEEECTTSSCSEE-EEEEEEEECSCCCSGGGSSEEEEEE
T ss_pred             CCCeEEEECCcCCc--CccccccCCCCeEEecceeeeeEEEEEEEcHHHeecCc-eEEEEEeccCCCCCccccccEEEEE
Confidence            89999999997654  55788999999999999999999999999999999999 999999999976  587  999999


Q ss_pred             EEEec
Q 007269          594 IRLEG  598 (610)
Q Consensus       594 IrLe~  598 (610)
                      ||||.
T Consensus       504 I~L~~  508 (508)
T 1nkg_A          504 VELFQ  508 (508)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99984
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A* Back     alignment and structure
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ... Back     alignment and structure
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A* Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 610
d1nkga2171 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, 4e-51
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  171 bits (436), Expect = 4e-51
 Identities = 37/197 (18%), Positives = 56/197 (28%), Gaps = 34/197 (17%)

Query: 405 GPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIV 464
           G T+++IG  D     F                H    R                L Y V
Sbjct: 2   GTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSRMSSW----------GPLTYTV 44

Query: 465 NQSDYRKDWFFAQVTRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSV-LQV 523
             S    D+  A                 IKF   +  ++    LR+    +      Q 
Sbjct: 45  GSSAL-TDFPMAVFKSV-------NNPVTIKFTATSA-QTGAATLRIGTTLSFAGGRPQA 95

Query: 524 RINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLTQALSG 583
            IN  +   P   T        + R    GL  +++V +P    V G  NTI +      
Sbjct: 96  TINSYTGSAPAAPTNLDS--RGVTRGAYRGLGEVYDVSIPSGTIVAG-TNTITINVISGS 152

Query: 584 SPFR----GVMYDYIRL 596
           S         ++D + L
Sbjct: 153 SGDTYLSPNFIFDCVEL 169

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query610
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 100.0
d1nkga3250 Rhamnogalacturonase B, RhgB, N-terminal domain {As 100.0
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 99.49
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.55
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.3
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.91
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 94.24
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 93.55
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 93.31
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 92.68
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 91.68
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 91.52
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 90.86
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 90.78
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 90.76
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 88.33
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 88.06
d1uxza_131 Cellulase B (lichenase 5a) {Cellvibrio mixtus [Tax 85.34
d1uy4a_132 Putative xylanase {Clostridium stercorarium [TaxId 85.02
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 84.14
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.8e-48  Score=369.83  Aligned_cols=164  Identities=23%  Similarity=0.306  Sum_probs=149.5

Q ss_pred             CCCeeEEeecCCCccceecCCCCccccccccccCcchhhhchhhhhhcccCCCCCeEEEeeecCCCCCeeeEEEeecCCC
Q 007269          405 GPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPDEDLIYIVNQSDYRKDWFFAQVTRKKDN  484 (610)
Q Consensus       405 g~~LweIGipDrta~eF~~~d~~~~~~n~l~~~hp~~~R~yglW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~  484 (610)
                      |++|||||+|||+|.||+++|       ++|.+||+++|||+ |+      |   ++||||+|++ +|||||||++    
T Consensus         2 G~tiW~IG~pDrsa~eF~~~~-------~~~~~hp~~~R~~~-w~------~---l~ytVG~Sd~-~Dw~~a~~~~----   59 (171)
T d1nkga2           2 GTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSRMSS-WG------P---LTYTVGSSAL-TDFPMAVFKS----   59 (171)
T ss_dssp             CSEEEEEECSSSSCTTSBTHH-------HHTTSCTTCTTSCC-CC------S---CEEETTTSCG-GGSBSEEETT----
T ss_pred             CCeEEEccCCCCCchhhcCcc-------cchhcCccchhccC-CC------C---cEEEeCCCCc-ccccEEEEcC----
Confidence            789999999999999999984       67888999999994 74      4   9999999998 5999999975    


Q ss_pred             CcCCCceEEEEEEecCCCCcceEEEEEeeecc-CCceeEEEEcCCCCCCCCcccccccCCCeeeeeeEeeeeEEEEEEee
Q 007269          485 QTYEGTTWQIKFELDNVNESAVYKLRLALASA-HVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVP  563 (610)
Q Consensus       485 ~~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ip  563 (610)
                         .+++|+|+|+|+++| .++|||||+||+| +++++||+|||+...  ++.++.++++|||+||++||+|++++|+||
T Consensus        60 ---~~~~w~I~F~L~~~~-~~~~tLrI~la~a~a~~~~qV~vN~~~~~--~~~~~~~~~~~~i~R~~~~g~~~~~~~~iP  133 (171)
T d1nkga2          60 ---VNNPVTIKFTATSAQ-TGAATLRIGTTLSFAGGRPQATINSYTGS--APAAPTNLDSRGVTRGAYRGLGEVYDVSIP  133 (171)
T ss_dssp             ---TTCCEEEEEEECGGG-CSCEEEEEEEEEEETTCEEEEEETTEECC--CCCCCCCCCSCCGGGTCCCSCCCEEEEEEC
T ss_pred             ---CCCCEEEEEEcCccc-CCceEEEEehhcccCCCCeEEEECCcCCC--CccCCccCCCCceeccccccceEEEEEEec
Confidence               578999999999877 5799999999998 678999999997664  556788999999999999999999999999


Q ss_pred             cCceecCCceEEEEEEeccCCC--Cc--eEEEEEEEEe
Q 007269          564 GALFVKGNNNTIYLTQALSGSP--FR--GVMYDYIRLE  597 (610)
Q Consensus       564 a~~L~~G~~NtI~lt~~~g~s~--f~--gvmyD~IrLe  597 (610)
                      +++|++|+ |+|+|++++|+++  |+  +||||||||.
T Consensus       134 a~~L~~G~-Nti~lt~~~gs~~~~~L~p~~~yD~i~L~  170 (171)
T d1nkga2         134 SGTIVAGT-NTITINVISGSSGDTYLSPNFIFDCVELF  170 (171)
T ss_dssp             TTSSCSEE-EEEEEEEECSCCCSGGGSSEEEEEEEEEE
T ss_pred             hHHeEecc-eEEEEEecCCCCCccccCCceeeEEhhhh
Confidence            99999999 9999999999875  55  9999999996
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure