Citrus Sinensis ID: 007270

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610
Protein Sequence
MKMSTKSFPVLTHLIVPSPSPKPHLIPSTSSHFLSFPQNPLPFTANVHHHKPFKINPLLCSSSTNSSNNAPSDQSQSQSQSHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAPSAHSHQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEccccccHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHccHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHHHcHccccccHHHHHHHccccHHHHHHHHccccccHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHcccccccHccHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHcccHHHcHHHHHHHHHccccHHHHHHHHHHccHHccccHHHccHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHHccccHHHHHHcHHHHcccHHHHcHHHHHHHHHccccccHHHHHcccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mkmstksfpvlthlivpspspkphlipstsshflsfpqnplpftanvhhhkpfkinpllcssstnssnnapsdqsqsqsqshsLTLTQQAIYDYLSElgisqedcafissnspKYAQMLNDSVQDLEEwkswssssvsnkndvgngdgeesVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARslsgeplppliHKVKYMKEIFfsgsntertlgkngRRMMKHLSIPIDEDVQQTLAFFEKIEARRggldmlgssDASFRYLVESFPRLLLLSAESHVKPVVDFLEivgvpkdcmgnvlllfppliFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFneekvpklsvdrairswphllgcstSKLKLMLDQLGELGVENKKLGQVIAkspqlllrkpqEFRQVVSFLEDvgfdrenvgrilgrcpeLFASNIERTLMKKIDFLIGigiskdhlprtikkypellvsdvdrtLLPRIKYLMEMGLSKRDIAFMVRRfspllgysidevfRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFllapsahshq
Flexible Loop (DISEMBL)
MKMSTKSFPVLTHLIVPSPSPKPHLIPSTSSHFLSFPQNPLPFTANVHHHKPFKINPLLCSSSTNSSNNAPSDQSQSQSQSHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSssvsnkndvgngdgeesVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFfsgsntertlgknGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKspqlllrkpqeFRQVVSFLedvgfdrenvgrilgrcpELFASNIERTLMKKIDFLIGigiskdhlprtikkypellvsdvdrtLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSyslekkikprfwvLKGRNIECSLEEMLGKNDDEFATEFLlapsahshq
Low Complexity Region (SEG)
MKMSTKSFPVLTHLIVPSPSPKPHLIPSTSSHFLSFPQNPLPFTANVHHHKPFKINPLLCssstnssnnAPsdqsqsqsqshsltltqqAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQdleewkswssssvsnkndvGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLEslglslssaisiarslsgEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAPSAHSHQ
Disordered region (IsUnstruct)
************HL**************************LPFTANVHHHKPFKINPLL**************************LTQQAIYDYLSELGISQEDCAFIS******************************************VLIGFKEKVVRMA*****NGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGS*************MKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFL*********
Disordered Region (DISOPRED)
********************************FLSFPQN**************************************************AIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLL*PS*****
Disordered Region (DISEMBL)
MKMSTKSFPVLTHLIVPSPSPKPHLIPSTSSHFLSFPQNPLPFTANVHHHKPFKINPLLCSS*********************LTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDL*******************GDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAPSAHSHQ
Disordered Region (DISPRO)
*KMSTKSFPVLTHLIVPSPSPKPHLIPSTSSHFLSFPQNPLPFTANVHHHKPFKINPLLCSSST************SQSQSHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAP******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKMSTKSFPVLTHLIVPSPSPKPHLIPSTSSHFLSFPQNPLPFTANVHHHKPFKINPLLCSSSTNSSNNAPSDQSQSQSQSHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAPSAHSHQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	610	2.2.26 [Sep-21-2011]
Q49AM1	385	mTERF domain-containing p	yes	no	0.383	0.607	0.216	2e-05
Q5R6G1	385	mTERF domain-containing p	yes	no	0.383	0.607	0.224	6e-05
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.309	0.466	0.259	7e-05
Q96E29	417	mTERF domain-containing p	no	no	0.298	0.436	0.229	0.0007

>sp|Q49AM1|MTER3_HUMAN mTERF domain-containing protein 3, mitochondrial OS=Homo sapiens GN=MTERFD3 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 115/245 (46%), Gaps = 11/245 (4%)

Query: 279 LLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDND 338
           +LL  E++V+ + + L+ +G  +  + ++L   P  I  +  A+ T+   ++ +   + +
Sbjct: 69  VLLEDETYVEEIANILQELGADETAVASILERCPEAIVCSPTAVNTQRKLWQLVCKNEEE 128

Query: 339 VGKMLLKYPW-ILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLML 397
           + K++ ++P    +   QEN +  +  F E  +  + + R + + P++      K K M+
Sbjct: 129 LIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAAPNVFHNPVEKNKQMV 188

Query: 398 DQLGELGVE------NKK--LGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRIL 449
             L E  ++      N K  L ++++++P +LL  P   ++ + FL++ GF    + ++L
Sbjct: 189 RILQESYLDVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLL 248

Query: 450 GRCPELFASNIERTLMKKIDFLIGIGISKDH-LPRTIKKYPELLVSDVDRTLLPRIKYLM 508
            +          R++   I F        DH L + + K P LL   V   L  R++ L+
Sbjct: 249 SKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVP-VLEERMQGLL 307

Query: 509 EMGLS 513
             G+S
Sbjct: 308 REGIS 312

Binds promoter DNA and regulates mitochondrial transcription. Required for normal levels of transcription, both for mRNA and tRNA. Required for normal mitochondrial protein synthesis, assembly of respiratory complexes and normal mitochondrial function.
Homo sapiens (taxid: 9606)

>sp|Q5R6G1|MTER3_PONAB mTERF domain-containing protein 3, mitochondrial OS=Pongo abelii GN=MTERFD3 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 279 LLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDND 338
           +LL  E++V+ + + L+ +G  +  + N+L   P  I     A+ T+   ++ +   + +
Sbjct: 69  VLLEDETYVEEIANILQELGADETAVANILERCPEAIVCRPTAVNTQRKLWQLVCKNEEE 128

Query: 339 VGKMLLKYPW-ILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLML 397
           + K++ ++P    +   QEN +  +  F E  +  + + R + +  ++      K K M+
Sbjct: 129 LIKLIEQFPESFFTIKDQENQKLNVQFFQELGLKNVVISRLLTAASNVFHNPVEKNKQMV 188

Query: 398 DQLGE--LGV----ENKK--LGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRIL 449
             L E  L V     N K  L ++++++P +LL  P   ++ + FL++ GF    + ++L
Sbjct: 189 RILQESYLNVGGSEANMKVWLLKLLSQNPFILLNSPTAIKETLEFLQEQGFTSFEILQLL 248

Query: 450 GRCPELFASNIERTLMKKIDFLIGIGISKDH-LPRTIKKYPELLVSDVDRTLLPRIKYLM 508
            +          R++   I F        DH L + + K P LL   V   L  R++ L+
Sbjct: 249 SKLKGFLFQLCPRSIQNSISFSKNAFKCTDHDLKQLVLKCPALLYYSVP-VLEERMQGLL 307

Query: 509 EMGLS 513
             G+S
Sbjct: 308 REGIS 312

Binds promoter DNA and regulates mitochondrial transcription. Required for normal levels of transcription, both for mRNA and tRNA. Required for normal mitochondrial protein synthesis, assembly of respiratory complexes and normal mitochondrial function.

Pongo abelii (taxid: 9601)

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 15/204 (7%)

Query: 278 LLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDN 337
           LL L  E  +  ++ FL+ VG+  + +G  L   P ++   ++A+ T+    +     + 
Sbjct: 167 LLTLDFEKDITKILLFLKDVGIEDNQLGPFLTKNPYILGEELEALETRVAYLKSKKFGNA 226

Query: 338 DVGKMLLKYPWILSTSIQENYEEILSVFNEE--KVPKLSVDRAIRSWPHLLGCSTSKLKL 395
           ++ +M+ + P++L  S+ E  +  L  F  E     K + D  IR +P LL   T KL+ 
Sbjct: 227 EITQMVSRAPYLLLFSV-ERLDNRLGFFKNELGLSVKKTKDLVIR-FPRLL---TGKLEP 281

Query: 396 MLDQLG----ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGR 451
           + + L     E G E  ++ Q+  K+P++L    +  RQ   +L ++     N   +L R
Sbjct: 282 VKENLQVCQVEFGFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNIMGIPHN---MLTR 338

Query: 452 CPELFASNIERTLMKKIDFLIGIG 475
            P++F S + R   + + FLI +G
Sbjct: 339 FPQVFNSKLLRIKERHM-FLIFLG 361

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Gallus gallus (taxid: 9031)

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 10/192 (5%)

Query: 393 LKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC 452
           +K ML  L ++G+E+ +LG  + K+  +     +  +  V++L    F + +V +++ + 
Sbjct: 188 IKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKA 247

Query: 453 PELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGL 512
           P L   ++ER   +   F   + +S       + + P LL   ++        Y +E+G 
Sbjct: 248 PFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGF 307

Query: 513 SKRDIAFMVRRFSPLLGYS---IDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKI 569
              +I  M+ R   +L  +   + E F     F+ N M      +V +P+ F+  L  K+
Sbjct: 308 KHNEIQHMITRIPKMLTANKMKLTETF----DFVHNVMSIPHHIIVKFPQVFNTRL-FKV 362

Query: 570 KPR--FWVLKGR 579
           K R  F    GR
Sbjct: 363 KERHLFLTYLGR 374

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	610
225443427	601	PREDICTED: uncharacterized protein LOC10	0.893	0.906	0.620	0.0
297735741	808	unnamed protein product [Vitis vinifera]	0.891	0.673	0.619	0.0
255544484	574	conserved hypothetical protein [Ricinus	0.927	0.986	0.592	0.0
449455138	594	PREDICTED: uncharacterized protein LOC10	0.929	0.954	0.572	0.0
30699372	591	Mitochondrial transcription termination	0.875	0.903	0.584	1e-179
33589698	525	At1g78930 [Arabidopsis thaliana]	0.842	0.979	0.603	1e-178
3152591	600	Similar to hypothetical protein gb|Z9733	0.875	0.89	0.571	1e-175
297842677	592	hypothetical protein ARALYDRAFT_477061 [	0.916	0.944	0.561	1e-173
356557195	592	PREDICTED: uncharacterized protein LOC10	0.857	0.883	0.547	1e-169
301154107	610	mTERF domain-containing protein, mitocho	0.829	0.829	0.570	1e-165

>gi|225443427|ref|XP_002267835.1| PREDICTED: uncharacterized protein LOC100244378 [Vitis vinifera]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/582 (62%), Positives = 444/582 (76%), Gaps = 37/582 (6%)

Query: 21  PKPHLIPSTSSHFLSFPQNPLPFTANVHHHKPFKINPLLCSSSTNSSNNAPSDQSQSQSQ 80
           P PH  PS +   LSFP  P         H P + +P       +   +   ++ Q+++ 
Sbjct: 33  PFPHKFPSITQ--LSFPHYP---------HLP-QASPSWNQQQEDEDEDEDEEEGQARA- 79

Query: 81  SHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNK 140
                    A+ + L E G+S+E+   I+ NSPKY +ML D V+DLEEW +W        
Sbjct: 80  ---------AVSEILRESGVSEEESVEIALNSPKYVKMLVDGVRDLEEWNAWKK------ 124

Query: 141 NDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPP 200
              G  + E      FKEKV R+A+EKGD G++AFLES+GLSLSSA+S+AR LS E LP 
Sbjct: 125 ---GAEEAE-----SFKEKVYRLAREKGDYGRLAFLESIGLSLSSALSVARYLSSESLPG 176

Query: 201 LIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDM 260
           LI KV+++K++FFS  N E  LGKN RRMM +LSIPIDED+QQTL+FFEKIEARRGGLD+
Sbjct: 177 LIEKVRFVKQMFFSEGNDEGFLGKNARRMMMYLSIPIDEDLQQTLSFFEKIEARRGGLDI 236

Query: 261 LGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNI- 319
           L S DASF YLVESFPRLLLLS ESH+KP++ FLE +GV +  M NVLLL+PP+IF++I 
Sbjct: 237 LCSKDASFGYLVESFPRLLLLSVESHLKPMMKFLEDIGVQRGSMRNVLLLYPPIIFYDIE 296

Query: 320 KAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAI 379
           K I+ + LAFE+IGA D D+G+ML+KYPWI+STSIQENYEEILS F  EKVPK SVD  I
Sbjct: 297 KDIKPRLLAFEKIGAADKDLGRMLVKYPWIISTSIQENYEEILSFFYREKVPKSSVDSGI 356

Query: 380 RSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVG 439
           +SWPHLLGCSTSKLKL+++Q GEL V NKKLGQ+IA SPQLLL+KP EF +VVSFLE++G
Sbjct: 357 KSWPHLLGCSTSKLKLIVEQFGELDVRNKKLGQIIATSPQLLLQKPNEFLEVVSFLEELG 416

Query: 440 FDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRT 499
           FDRE VGRILGRCPE+FA+NIE+TL KK++FL  IGI KDHLPR I+KYPEL VSD++RT
Sbjct: 417 FDRETVGRILGRCPEIFAANIEKTLKKKLEFLASIGIFKDHLPRVIRKYPELFVSDINRT 476

Query: 500 LLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPR 559
           LLPR KYL + G SKRDIAFM+RRFSPLLGYS++EV RPKL FL+ TMEK +++VV YPR
Sbjct: 477 LLPRTKYLRKTGFSKRDIAFMIRRFSPLLGYSVEEVLRPKLEFLVKTMEKPVKEVVDYPR 536

Query: 560 YFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFL 601
           YFSYSLEKKIKPRFWVLK RN++CSL++ML KND+EFA EF+
Sbjct: 537 YFSYSLEKKIKPRFWVLKVRNVDCSLKDMLAKNDEEFAAEFM 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735741|emb|CBI18428.3| unnamed protein product [Vitis vinifera]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/581 (61%), Positives = 443/581 (76%), Gaps = 37/581 (6%)

Query: 21  PKPHLIPSTSSHFLSFPQNPLPFTANVHHHKPFKINPLLCSSSTNSSNNAPSDQSQSQSQ 80
           P PH  PS +   LSFP  P         H P + +P       +   +   ++ Q+++ 
Sbjct: 33  PFPHKFPSITQ--LSFPHYP---------HLP-QASPSWNQQQEDEDEDEDEEEGQARA- 79

Query: 81  SHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNK 140
                    A+ + L E G+S+E+   I+ NSPKY +ML D V+DLEEW +W        
Sbjct: 80  ---------AVSEILRESGVSEEESVEIALNSPKYVKMLVDGVRDLEEWNAWKK------ 124

Query: 141 NDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPP 200
              G  + E      FKEKV R+A+EKGD G++AFLES+GLSLSSA+S+AR LS E LP 
Sbjct: 125 ---GAEEAE-----SFKEKVYRLAREKGDYGRLAFLESIGLSLSSALSVARYLSSESLPG 176

Query: 201 LIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDM 260
           LI KV+++K++FFS  N E  LGKN RRMM +LSIPIDED+QQTL+FFEKIEARRGGLD+
Sbjct: 177 LIEKVRFVKQMFFSEGNDEGFLGKNARRMMMYLSIPIDEDLQQTLSFFEKIEARRGGLDI 236

Query: 261 LGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNI- 319
           L S DASF YLVESFPRLLLLS ESH+KP++ FLE +GV +  M NVLLL+PP+IF++I 
Sbjct: 237 LCSKDASFGYLVESFPRLLLLSVESHLKPMMKFLEDIGVQRGSMRNVLLLYPPIIFYDIE 296

Query: 320 KAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAI 379
           K I+ + LAFE+IGA D D+G+ML+KYPWI+STSIQENYEEILS F  EKVPK SVD  I
Sbjct: 297 KDIKPRLLAFEKIGAADKDLGRMLVKYPWIISTSIQENYEEILSFFYREKVPKSSVDSGI 356

Query: 380 RSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVG 439
           +SWPHLLGCSTSKLKL+++Q GEL V NKKLGQ+IA SPQLLL+KP EF +VVSFLE++G
Sbjct: 357 KSWPHLLGCSTSKLKLIVEQFGELDVRNKKLGQIIATSPQLLLQKPNEFLEVVSFLEELG 416

Query: 440 FDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRT 499
           FDRE VGRILGRCPE+FA+NIE+TL KK++FL  IGI KDHLPR I+KYPEL VSD++RT
Sbjct: 417 FDRETVGRILGRCPEIFAANIEKTLKKKLEFLASIGIFKDHLPRVIRKYPELFVSDINRT 476

Query: 500 LLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPR 559
           LLPR KYL + G SKRDIAFM+RRFSPLLGYS++EV RPKL FL+ TMEK +++VV YPR
Sbjct: 477 LLPRTKYLRKTGFSKRDIAFMIRRFSPLLGYSVEEVLRPKLEFLVKTMEKPVKEVVDYPR 536

Query: 560 YFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEF 600
           YFSYSLEKKIKPRFWVLK RN++CSL++ML KND+EFA +F
Sbjct: 537 YFSYSLEKKIKPRFWVLKVRNVDCSLKDMLAKNDEEFAADF 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544484|ref|XP_002513303.1| conserved hypothetical protein [Ricinus communis] gi|223547211|gb|EEF48706.1| conserved hypothetical protein [Ricinus communis]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/592 (59%), Positives = 449/592 (75%), Gaps = 26/592 (4%)

Query: 14  LIVPSPSPKPHLIPSTSSHFLSFPQ--NP-LPFTANVHHHKPFKINPLLCSSSTNSSNNA 70
           L++P+ +  P   P T    LSFPQ  +P LPF    +      +         N SN +
Sbjct: 6   LLIPTTANLPFSSPKT----LSFPQFRHPRLPFPNKAYSFTTQFLRKHFFPQCQNPSNPS 61

Query: 71  PSDQSQSQSQSHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWK 130
           P         +  L  T++AI  +L E GI+ ED   I+SN P+YA+ML DSV+DLEEW 
Sbjct: 62  PY-------LAEHLDDTREAISHFLVEFGITIEDSTSIASNCPQYAKMLIDSVKDLEEWN 114

Query: 131 SWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIA 190
           +W S            D  E   +GFKEKV+ MAKEKGDNGKVAFLESLG +LSSA+++A
Sbjct: 115 AWKS------------DEMEFDALGFKEKVLYMAKEKGDNGKVAFLESLGFTLSSAMNVA 162

Query: 191 RSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEK 250
           R LS E LP LI KVKY+KE+FFSGS+ +  +G+N RRMM HLSIPID+D+QQTL+ FEK
Sbjct: 163 RYLSTESLPALILKVKYIKEMFFSGSDDKGHIGRNARRMMMHLSIPIDDDLQQTLSLFEK 222

Query: 251 IEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLL 310
           I+ARRGGLD LGSSDA+FRY +ESFPR LLL  ++H+KP+V+F E +GVPK+ M ++ LL
Sbjct: 223 IQARRGGLDRLGSSDATFRYFIESFPRTLLLQPDAHLKPMVEFFESLGVPKERMDSIFLL 282

Query: 311 FPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKV 370
           FPP+I ++IK I+ K LA E++GAVD D GKM+ KYPWILSTSIQ+NY+EILS  + EKV
Sbjct: 283 FPPVILYDIKVIKRKVLALEKVGAVDEDFGKMIFKYPWILSTSIQDNYKEILSFCDAEKV 342

Query: 371 PKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQ 430
            K S+D+AIRSWPHLLGCSTSKLK+++D  G LGV++KK+G VIAKSPQLLLRKP+EF Q
Sbjct: 343 AKASIDKAIRSWPHLLGCSTSKLKVIVDHFGILGVKHKKVGHVIAKSPQLLLRKPEEFLQ 402

Query: 431 VVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPE 490
           VVSFL+++GFD+E+VG+IL RCPE+FA++ E+TL KK++FL  +G+  DHL RTIKKYPE
Sbjct: 403 VVSFLKELGFDQESVGKILVRCPEIFATSAEKTLRKKVEFLTWMGVYGDHLCRTIKKYPE 462

Query: 491 LLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKS 550
           LLVSD++RTL PR+KYLME+G++K ++  MV RFSPLLGYSI+EV RPK  FL+NTM K 
Sbjct: 463 LLVSDIERTLHPRMKYLMEVGVTKEEVGLMVGRFSPLLGYSIEEVLRPKYEFLVNTMGKG 522

Query: 551 LQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLL 602
           +++VV YPRYFSYSLEKKIKPR+W +  RN+ECSL+EML KNDD+FA  F++
Sbjct: 523 VKEVVEYPRYFSYSLEKKIKPRYWAVMRRNVECSLKEMLDKNDDDFAHHFIV 574

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455138|ref|XP_004145310.1| PREDICTED: uncharacterized protein LOC101222814 [Cucumis sativus] gi|449472883|ref|XP_004153723.1| PREDICTED: uncharacterized protein LOC101222366 [Cucumis sativus] gi|449514567|ref|XP_004164414.1| PREDICTED: uncharacterized LOC101222366 [Cucumis sativus]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/592 (57%), Positives = 435/592 (73%), Gaps = 25/592 (4%)

Query: 21  PKPHLIPSTSSHFLSFPQNP--LPFTANVHHHKPFKINPLLCSS-----STNSSNNAP-S 72
           P P +  S+ S  L  P +P  LP + N     P + + LL SS     ++ S +  P S
Sbjct: 9   PTPTITGSSKSSPL-IPLHPSILPQSLNFCPF-PSRFHSLLTSSHFLPLASISPDALPFS 66

Query: 73  DQSQSQSQSHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEE---W 129
           D    +   HSL   Q A+ +YL   G+ +++   I+SNSP++ +ML D+V++L+E   W
Sbjct: 67  DDPPQEDPLHSLAEAQLAVSEYLQRFGVLEDEAVSIASNSPRFLKMLVDAVRELDETSMW 126

Query: 130 KSWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISI 189
            SWS        + G  DG      GFKEKV  MA EKGD GKVAFLES+G++LSSA+++
Sbjct: 127 DSWS-------KERGELDG-----FGFKEKVASMAMEKGDCGKVAFLESVGMNLSSAMNV 174

Query: 190 ARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFE 249
           AR LSGE LP LI+KVKYMK +FFSGS     +GKN RRMM +LSIP D+DVQQTL+FFE
Sbjct: 175 ARYLSGEMLPSLIYKVKYMKALFFSGSGDGILIGKNARRMMTNLSIPPDDDVQQTLSFFE 234

Query: 250 KIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLL 309
           KIEARRGGLDML S++ SF  L+ESFPR+LLLS ESHVKP+V+FLE +G+PK+ M ++ L
Sbjct: 235 KIEARRGGLDMLSSNEESFGLLLESFPRMLLLSVESHVKPMVEFLEKIGIPKERMRSIFL 294

Query: 310 LFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEK 369
           LFPP+IF++ + ++++ +AFEE+G      GK+LLKYPWI S  I  N ++I+S F  EK
Sbjct: 295 LFPPVIFFDTEVLKSRIMAFEEVGVEVTVFGKLLLKYPWITSNCIHGNLKQIVSFFESEK 354

Query: 370 VPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFR 429
           VP  S+  AI SWP +LG STSKL+LM+D+L  LGV +KKLGQVIA SPQ+LL KPQEF 
Sbjct: 355 VPSASIINAISSWPLILGSSTSKLELMVDRLDGLGVRSKKLGQVIATSPQILLLKPQEFL 414

Query: 430 QVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYP 489
           QVVSFLE+VGFD+E++GRI+ RCPE+ A+++E+TL +K++FLI IG+SK HLPR IKKYP
Sbjct: 415 QVVSFLEEVGFDKESIGRIIARCPEISATSVEKTLKRKLEFLIKIGVSKTHLPRAIKKYP 474

Query: 490 ELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEK 549
           ELLVSD  +TL PRIKYL + GLS+RDIA MV RFSPLLGYSI+EV RPKL FL+N M+K
Sbjct: 475 ELLVSDPHKTLHPRIKYLRQRGLSERDIASMVVRFSPLLGYSIEEVLRPKLDFLVNIMKK 534

Query: 550 SLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFL 601
             ++VV YPRYFSYSLE KI PRF  LKG N+ECSL++MLGKND+EF+  FL
Sbjct: 535 PKKEVVDYPRYFSYSLENKIIPRFRALKGMNVECSLKDMLGKNDEEFSVAFL 586

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30699372|ref|NP_178014.2| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|110736356|dbj|BAF00147.1| hypothetical protein [Arabidopsis thaliana] gi|332198059|gb|AEE36180.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 322/551 (58%), Positives = 417/551 (75%), Gaps = 17/551 (3%)

Query: 61  SSSTNSSNNAPSDQSQSQSQSHSLTLTQQAIYDYLS-ELGISQEDCAFISSNSPKYAQML 119
           +S  +  +N  S+ SQ+  ++      Q +I  +L  + G+S+ D  FISSN PKY +M+
Sbjct: 52  ASLQHGDSNFSSNSSQTNQEA------QNSIAGFLRRDTGLSEADSDFISSNCPKYTRMI 105

Query: 120 NDSVQDLEEWKSWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESL 179
            + V+DLEEW SW  S  S + + G         +GFKEKV+ M K+KGD GKVAFLESL
Sbjct: 106 VEGVRDLEEWNSWKGSGESERVEEG---------LGFKEKVIYMVKQKGDGGKVAFLESL 156

Query: 180 GLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDE 239
           GLSLSSA+ +A  +S E LP L+ KVKY+KEIFFSGS+ +  +GK  RRMM +LSIPIDE
Sbjct: 157 GLSLSSAMYLAHYVSSESLPILLDKVKYLKEIFFSGSDEKGLVGKYARRMMLYLSIPIDE 216

Query: 240 DVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGV 299
           DVQQTL+FFEKIEARRGGLDMLGS DASFR+L+ESFPRLLLLS E+ +KP+V+FLE +G+
Sbjct: 217 DVQQTLSFFEKIEARRGGLDMLGSVDASFRFLLESFPRLLLLSEENDMKPMVEFLESIGI 276

Query: 300 PKDCMGNVLLLFPPLIFWNIKAIRTK-ALAFEEIGAVDNDVGKMLLKYPWILSTSIQENY 358
           PK C+G VLLL+PP++    + I+ + A A E++  V+ D GK+LLKYPWILS SIQENY
Sbjct: 277 PKYCLGKVLLLYPPIMLGKTEEIKRRVATAMEKVSVVNKDSGKLLLKYPWILSPSIQENY 336

Query: 359 EEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSP 418
             I S F  E V K+ +D AIR WP LLGCS S +++M+ +  +LGV +K++G+VI K P
Sbjct: 337 SHIGSFFYSESVLKMDIDHAIRRWPLLLGCSASNMEMMVKEFDKLGVRDKRMGKVIPKMP 396

Query: 419 QLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISK 478
           QLLL KPQEF +VV FLED+GF +E VG+IL RCPE+F  +IE+TL KK+ FL   G+S 
Sbjct: 397 QLLLCKPQEFLKVVCFLEDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVST 456

Query: 479 DHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRP 538
            H PR IKKYPE L+ D D+T+LPR+KYLME+G+S+R+IAFM+R+FSP+LGYSID+V RP
Sbjct: 457 THFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDKVLRP 516

Query: 539 KLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFAT 598
           K  FL+N+MEK +++V+ YPRYFSYSLEK+IKPRF VLKGRNIEC+L+EMLGKND+EFA 
Sbjct: 517 KFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDEEFAA 576

Query: 599 EFLLAPSAHSH 609
           +FL      +H
Sbjct: 577 DFLGLGELQTH 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33589698|gb|AAQ22615.1| At1g78930 [Arabidopsis thaliana]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 317/525 (60%), Positives = 405/525 (77%), Gaps = 11/525 (2%)

Query: 87  TQQAIYDYLS-ELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNKNDVGN 145
            Q +I  +L  + G+S+ D  FISSN PKY +M+ + V+DLEEW SW  S  S + + G 
Sbjct: 6   AQNSIAGFLRRDTGLSEADSDFISSNCPKYTRMIVEGVRDLEEWNSWKGSGESERVEEG- 64

Query: 146 GDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKV 205
                   +GFKEKV+ M K+KGD GKVAFLESLGLSLSSA+ +A  +S E LP L+ KV
Sbjct: 65  --------LGFKEKVIYMVKQKGDGGKVAFLESLGLSLSSAMYLAHYVSSESLPILLDKV 116

Query: 206 KYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSD 265
           KY+KEIFFSGS+ +  +GK  RRMM +LSIPIDEDVQQTL+FFEKIEARRGGLDMLGS D
Sbjct: 117 KYLKEIFFSGSDEKGLVGKYARRMMLYLSIPIDEDVQQTLSFFEKIEARRGGLDMLGSVD 176

Query: 266 ASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTK 325
           ASFR+L+ESFPRLLLLS E+ +KP+V+FLE +G+PK C+G VLLL+PP++    + I+ +
Sbjct: 177 ASFRFLLESFPRLLLLSEENDMKPMVEFLESIGIPKYCLGKVLLLYPPIMLGKTEEIKRR 236

Query: 326 -ALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPH 384
            A A E++  V+ D GK+LLKYPWILS SIQENY  I S F  E V K+ +D AIR WP 
Sbjct: 237 VATAMEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPL 296

Query: 385 LLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDREN 444
           LLGCS S +++M+ +  +LGV +K++G+VI K PQLLL KPQEF +VV FLED+GF +E 
Sbjct: 297 LLGCSASNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQEFLKVVCFLEDLGFQKEI 356

Query: 445 VGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRI 504
           VG+IL RCPE+F  +IE+TL KK+ FL   G+S  H PR IKKYPE L+ D D+T+LPR+
Sbjct: 357 VGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRL 416

Query: 505 KYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYS 564
           KYLME+G+S+R+IAFM+R+FSP+LGYSID+V RPK  FL+N+MEK +++V+ YPRYFSYS
Sbjct: 417 KYLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYS 476

Query: 565 LEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAPSAHSH 609
           LEK+IKPRF VLKGRNIEC+L+EMLGKND+EFA +FL      +H
Sbjct: 477 LEKRIKPRFRVLKGRNIECTLQEMLGKNDEEFAADFLGLGELQTH 521

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3152591|gb|AAC17072.1| Similar to hypothetical protein gb|Z97336 from A. thaliana. This gene is probably cut off [Arabidopsis thaliana]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 320/560 (57%), Positives = 415/560 (74%), Gaps = 26/560 (4%)

Query: 61  SSSTNSSNNAPSDQSQSQSQSHSLTLTQQAIYDYLS-ELGISQEDCAFISSNSPKYAQML 119
           +S  +  +N  S+ SQ+  ++      Q +I  +L  + G+S+ D  FISSN PKY +M+
Sbjct: 52  ASLQHGDSNFSSNSSQTNQEA------QNSIAGFLRRDTGLSEADSDFISSNCPKYTRMI 105

Query: 120 NDSVQDLEEWKSWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESL 179
            + V+DLEEW SW  S  S + + G         +GFKEKV+ M K+KGD GKVAFLESL
Sbjct: 106 VEGVRDLEEWNSWKGSGESERVEEG---------LGFKEKVIYMVKQKGDGGKVAFLESL 156

Query: 180 GLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDE 239
           GLSLSSA+ +A  +S E LP L+ KVKY+KEIFFSGS+ +  +GK  RRMM +LSIPIDE
Sbjct: 157 GLSLSSAMYLAHYVSSESLPILLDKVKYLKEIFFSGSDEKGLVGKYARRMMLYLSIPIDE 216

Query: 240 DVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGV 299
           DVQQTL+FFEKIEARRGGLDMLGS DASFR+L+ESFPRLLLLS E+ +KP+V+FLE +G+
Sbjct: 217 DVQQTLSFFEKIEARRGGLDMLGSVDASFRFLLESFPRLLLLSEENDMKPMVEFLESIGI 276

Query: 300 PKDCMGNVLLLFPPLIFWNIKAIRTK-ALAFEEIGAVDNDVGKMLLKYPWILSTSIQENY 358
           PK C+G VLLL+PP++    + I+ + A A E++  V+ D GK+LLKYPWILS SIQENY
Sbjct: 277 PKYCLGKVLLLYPPIMLGKTEEIKRRVATAMEKVSVVNKDSGKLLLKYPWILSPSIQENY 336

Query: 359 EEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSP 418
             I S F  E V K+ +D AIR WP LLGCS S +++M+ +  +LGV +K++G+VI K P
Sbjct: 337 SHIGSFFYSESVLKMDIDHAIRRWPLLLGCSASNMEMMVKEFDKLGVRDKRMGKVIPKMP 396

Query: 419 QLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISK 478
           QLLL KPQEF +VV FLED+GF +E VG+IL RCPE+F  +IE+TL KK+ FL   G+S 
Sbjct: 397 QLLLCKPQEFLKVVCFLEDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRFGVST 456

Query: 479 DHLPRTIKKYPELLVSDVDRTLLP---------RIKYLMEMGLSKRDIAFMVRRFSPLLG 529
            H PR IKKYPE L+ D D+T +          R+KYLME+G+S+R+IAFM+R+FSP+LG
Sbjct: 457 THFPRIIKKYPEFLIYDADKTKMTPNFVNICSYRLKYLMEIGISEREIAFMIRKFSPILG 516

Query: 530 YSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEML 589
           YSID+V RPK  FL+N+MEK +++V+ YPRYFSYSLEK+IKPRF VLKGRNIEC+L+EML
Sbjct: 517 YSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEML 576

Query: 590 GKNDDEFATEFLLAPSAHSH 609
           GKND+EFA +FL      +H
Sbjct: 577 GKNDEEFAADFLGLGELQTH 596

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842677|ref|XP_002889220.1| hypothetical protein ARALYDRAFT_477061 [Arabidopsis lyrata subsp. lyrata] gi|297335061|gb|EFH65479.1| hypothetical protein ARALYDRAFT_477061 [Arabidopsis lyrata subsp. lyrata]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 327/582 (56%), Positives = 428/582 (73%), Gaps = 23/582 (3%)

Query: 30  SSHFLSFPQNPLPFTANVHHHKPFKINPLLCSSSTNSSNNAPSDQSQSQSQSHSLTLTQQ 89
           +S F S P+  L   +  HH   F ++       TN S+N+    SQ+  +       Q 
Sbjct: 28  NSLFFSPPRVTL--LSAYHHSGRFAVSASFQHGDTNLSSNS----SQTNHED-----AQN 76

Query: 90  AIYDYLS-ELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNKNDVGNGDG 148
           +I ++L  ++G+S+ D  FIS N PKY +M+ + V+DLEEW SW  S        G   G
Sbjct: 77  SIAEFLRRDIGLSEADSDFISENCPKYTRMIVEGVRDLEEWNSWKGS--------GESVG 128

Query: 149 EESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYM 208
            E   +GFKEKV+ M K+KGD GKVAFLESLGLSLSSA+ +A  +S E L  L+ KVKY+
Sbjct: 129 IEG--LGFKEKVIYMVKQKGDGGKVAFLESLGLSLSSAMYLAHYVSSESLTILLDKVKYL 186

Query: 209 KEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASF 268
           KEIFFSGS+ +  +GK  RRMM +LSIPIDEDVQQTL+FFEKIEARRGGLDMLGS DASF
Sbjct: 187 KEIFFSGSDEKGLVGKYARRMMLYLSIPIDEDVQQTLSFFEKIEARRGGLDMLGSVDASF 246

Query: 269 RYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTK-AL 327
           R+L+ESFPRLLLLS E+ +KP+V+FLE +G+PK C+G +LLL+PP++    + I+ + A 
Sbjct: 247 RFLIESFPRLLLLSEENDMKPMVEFLESIGIPKYCLGKLLLLYPPILLGKTEEIKRRVAA 306

Query: 328 AFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLG 387
           A E++  VD D GK+LLKYPWILS SIQENY  I+S F  E V K+ +D AI  WP LLG
Sbjct: 307 ALEKLSVVDKDSGKVLLKYPWILSPSIQENYSHIVSFFYSESVLKMDIDHAIERWPLLLG 366

Query: 388 CSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGR 447
           CS S +++M+ +  +LGV +K++G+VI K PQLLL KPQ+F +VV FLED+GF +E VG+
Sbjct: 367 CSASNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQDFLKVVCFLEDLGFQKEIVGQ 426

Query: 448 ILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYL 507
           IL RCPE+F  +I++TL KK+ FL   G+S  H PR IKKYPE L+ D D+T+LPR+KYL
Sbjct: 427 ILCRCPEIFGCSIDKTLQKKLIFLTRYGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYL 486

Query: 508 MEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEK 567
           ME+G+S+R+IAFM+R+FSP+LGYSID+V RPK  FL+N+MEK +++V+ YPRYFSYSLEK
Sbjct: 487 MEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEK 546

Query: 568 KIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAPSAHSH 609
           +IKPRFWVL+GRNIEC+L+EMLGKND+EFA +FL      +H
Sbjct: 547 RIKPRFWVLEGRNIECTLQEMLGKNDEEFAADFLGLGELQTH 588

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557195|ref|XP_003546903.1| PREDICTED: uncharacterized protein LOC100802127 [Glycine max]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 298/544 (54%), Positives = 400/544 (73%), Gaps = 21/544 (3%)

Query: 61  SSSTNSSNNAPSDQSQSQSQSHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLN 120
           SSS    N+    +  S          ++A+  YL ELG+S+ED  +ISS SP+Y +ML 
Sbjct: 50  SSSFEVDNDKARKRRSSWRCGCGSEEARRAVSSYLGELGVSEEDSVWISSKSPEYVKMLV 109

Query: 121 DSVQDLEEWKSWSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLG 180
           + V+DLE+W+   +                   + FK+K++ +A +KGD GKVA+LESLG
Sbjct: 110 EGVRDLEQWQIALAG------------------LSFKDKIIHIAAQKGDKGKVAYLESLG 151

Query: 181 LSLSSAISIARSLSGEP--LPPLIHKVKYMKEI-FFSGSNTERTLGKNGRRMMKHLSIPI 237
            +LSS+++IAR L  +   LP L+HKV  +K++ FFS +     L K+ R MM+HLSI I
Sbjct: 152 FTLSSSMNIARYLPSDTHTLPSLMHKVTRIKQLLFFSPTPDHHLLIKSIRLMMRHLSISI 211

Query: 238 DEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIV 297
           DED+Q TL+FFEK++A+ GGL +L   +A+FR L+ESFPRLL LS ++H  P++ FL   
Sbjct: 212 DEDLQHTLSFFEKLQAKPGGLGILAYKNAAFRSLIESFPRLLQLSVDNHFTPILHFLHNF 271

Query: 298 GVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQEN 357
           G+P   + N++L FPPL+FW+++ ++T+ L F+EI   D D  K+LLKYPW+LSTSIQEN
Sbjct: 272 GIPTFRISNIILAFPPLLFWDLQLLQTRLLVFKEIDLPDKDYAKLLLKYPWLLSTSIQEN 331

Query: 358 YEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKS 417
           Y E+L+     KVPK  +DRAI S PHLL CSTSKLK M+DQ  ELGV NKKL QVIAKS
Sbjct: 332 YTELLAFSYSIKVPKTQIDRAIESHPHLLSCSTSKLKSMVDQFAELGVRNKKLNQVIAKS 391

Query: 418 PQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGIS 477
           PQLLLRKP++F Q+V   E++GFD+E +GRIL RCPE+FA++I +TL +KI+FL  +G+S
Sbjct: 392 PQLLLRKPKDFLQIVLLFENMGFDKETIGRILARCPEIFAASINKTLQRKIEFLGRVGVS 451

Query: 478 KDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFR 537
           K  LP  I+KYPELLVSD+D+TLL RI YLM++GLS++DIA+MVR FSPLLGYSI+ V R
Sbjct: 452 KTFLPGVIRKYPELLVSDIDKTLLQRIMYLMKLGLSEKDIAYMVRTFSPLLGYSIEGVLR 511

Query: 538 PKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFA 597
           PK+ FL+N+ME+ ++DVV YPRYFSYSLEKKIKPR+WVLKGR+I+CSL++MLGKND+EFA
Sbjct: 512 PKIEFLVNSMERPVRDVVDYPRYFSYSLEKKIKPRYWVLKGRDIKCSLKDMLGKNDEEFA 571

Query: 598 TEFL 601
            EF+
Sbjct: 572 AEFM 575

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154107|emb|CBW30201.1| mTERF domain-containing protein, mitochondrial [Musa balbisiana]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/519 (57%), Positives = 391/519 (75%), Gaps = 13/519 (2%)

Query: 87  TQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEE---WKSWSSSSVSNKNDV 143
            ++A+ + L E G SQED  +I++NSP Y +ML  +VQ+L+E   W SW+S       ++
Sbjct: 84  AREAVVEILREFGASQEDSVYIAANSPCYVEMLVGNVQELDELGLWGSWNS-------EI 136

Query: 144 GNGDGEESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIH 203
             G+ + S L  F++KV  MAK KGD G + +LES+G+ LSSA+ IAR LS E LP LI 
Sbjct: 137 MEGNVDMSAL-SFRKKVYYMAKSKGDKGVLPYLESIGVKLSSALLIARYLSSEKLPQLID 195

Query: 204 KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGS 263
           KV ++  I F  S  +  +G+N RRMM +LSIP DEDVQ TL+FFEK+EAR GGL MLG 
Sbjct: 196 KVNFVCGILFPSSINKALIGRNARRMMMYLSIPADEDVQSTLSFFEKMEARHGGLSMLGH 255

Query: 264 SDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNI-KAI 322
            DASF YLVESFP+LLL S E H KP+V FLE++GVP+  +  +LL FPP+IF +I K I
Sbjct: 256 KDASFPYLVESFPKLLLCSVEDHFKPLVGFLELLGVPEAGIATILLSFPPIIFCDIEKEI 315

Query: 323 RTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSW 382
           + K  AF + G  + D+ KML+KYPWILSTSIQENYE+IL+ FNE+KVPK SVD AIRSW
Sbjct: 316 KPKLCAFSK-GLEEKDIAKMLMKYPWILSTSIQENYEKILAFFNEKKVPKSSVDLAIRSW 374

Query: 383 PHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDR 442
           PH+LGCS +K+K M++Q  E GV+ K L  VI  SPQLLL+KP+EF++VVSF+E++GFD 
Sbjct: 375 PHILGCSATKMKSMVEQFNEFGVKKKMLVPVITSSPQLLLKKPKEFQEVVSFMEEIGFDS 434

Query: 443 ENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLP 502
           + +GRIL RCPE+FAS+++ TL KK++FL   G+S+D L R ++KYPE+L+ D D TLLP
Sbjct: 435 KTIGRILCRCPEIFASSVDNTLRKKVNFLADFGVSRDCLLRVVRKYPEMLLLDTDNTLLP 494

Query: 503 RIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFS 562
           R+ +LM +GLSKR++  M+ RFSP+LGYSI+ V +PKL FLL TM+K L+++V YPRYFS
Sbjct: 495 RMSFLMRVGLSKREVCSMICRFSPILGYSIEMVLKPKLDFLLRTMKKPLKEIVVYPRYFS 554

Query: 563 YSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFL 601
           YSL+KKIKPRFWV++ R +ECSL +ML KNDDEFA E++
Sbjct: 555 YSLDKKIKPRFWVIQSRKLECSLNDMLSKNDDEFAEEYM 593

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	610
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.824	0.851	0.574	7.2e-155
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.603	0.574	0.256	2e-32
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.377	0.812	0.327	3.1e-28
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.4	0.732	0.303	5.1e-24
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.372	0.749	0.301	1.7e-23
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.445	0.551	0.234	1.1e-21
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.398	0.489	0.277	2.6e-21
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.529	0.637	0.224	2.8e-21
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.318	0.708	0.28	1.8e-19
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.313	0.353	0.290	3.8e-19

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
 Identities = 296/515 (57%), Positives = 379/515 (73%)

Query:    97 ELGISQEDCAFISSNSPKYAQMLNDSVQXXXXXXXXXXXXXXXXXXXGNGDGEE-SVLIG 155
             + G+S+ D  FISSN PKY +M+ + V+                   G+G+ E     +G
Sbjct:    83 DTGLSEADSDFISSNCPKYTRMIVEGVRDLEEWNSWK----------GSGESERVEEGLG 132

Query:   156 FKEKVVRMAKEKGDNGKVAFLEXXXXXXXXXXXXXXXXXXEPLPPLIHKVKYMKEIFFSG 215
             FKEKV+ M K+KGD GKVAFLE                  E LP L+ KVKY+KEIFFSG
Sbjct:   133 FKEKVIYMVKQKGDGGKVAFLESLGLSLSSAMYLAHYVSSESLPILLDKVKYLKEIFFSG 192

Query:   216 SNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESF 275
             S+ +  +GK  RRMM +LSIPIDEDVQQTL+FFEKIEARRGGLDMLGS DASFR+L+ESF
Sbjct:   193 SDEKGLVGKYARRMMLYLSIPIDEDVQQTLSFFEKIEARRGGLDMLGSVDASFRFLLESF 252

Query:   276 PRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTK-ALAFEEIGA 334
             PRLLLLS E+ +KP+V+FLE +G+PK C+G VLLL+PP++    + I+ + A A E++  
Sbjct:   253 PRLLLLSEENDMKPMVEFLESIGIPKYCLGKVLLLYPPIMLGKTEEIKRRVATAMEKVSV 312

Query:   335 VDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLK 394
             V+ D GK+LLKYPWILS SIQENY  I S F  E V K+ +D AIR WP LLGCS S ++
Sbjct:   313 VNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGCSASNME 372

Query:   395 LMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPE 454
             +M+ +  +LGV +K++G+VI K PQLLL KPQEF +VV FLED+GF +E VG+IL RCPE
Sbjct:   373 MMVKEFDKLGVRDKRMGKVIPKMPQLLLCKPQEFLKVVCFLEDLGFQKEIVGQILCRCPE 432

Query:   455 LFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSK 514
             +F  +IE+TL KK+ FL   G+S  H PR IKKYPE L+ D D+T+LPR+KYLME+G+S+
Sbjct:   433 IFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISE 492

Query:   515 RDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFW 574
             R+IAFM+R+FSP+LGYSID+V RPK  FL+N+MEK +++V+ YPRYFSYSLEK+IKPRF 
Sbjct:   493 REIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFR 552

Query:   575 VLKGRNIECSLEEMLGKNDDEFATEFLLAPSAHSH 609
             VLKGRNIEC+L+EMLGKND+EFA +FL      +H
Sbjct:   553 VLKGRNIECTLQEMLGKNDEEFAADFLGLGELQTH 587

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 2.0e-32, P = 2.0e-32
 Identities = 96/375 (25%), Positives = 187/375 (49%)

Query:   228 RMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRL---LLLSAE 284
             R +KH  +  +   +        +++ R  ++ L S      ++  +F R    +L    
Sbjct:   219 RWLKHHELSYNRIAKIICMSKGNLDSIRIMIEWLKSIHVKGEFIAVAFLRSGDNILQRNR 278

Query:   285 SHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVGKMLL 344
               +  +V++LE  GV +D MG V+   P L+ ++++ ++++   F ++G   ND G M+ 
Sbjct:   279 EELNEIVEYLESNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVY 338

Query:   345 KYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTS-KLKLMLDQLGEL 403
              YP I+     +  E+ ++   E  +    V R +   PHL+GCS   + K ++     L
Sbjct:   339 DYPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYL 398

Query:   404 GVENKKLGQVIAKSPQLL-LRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIER 462
             G+  + + +++   P L  +   +     V FL+++G   E +G +L + P L  +++ +
Sbjct:   399 GIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYK 458

Query:   463 TLMKKIDFLIG-IGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMV 521
              +   + FL+   G+++  + + I   P LL   +   L P ++Y + +G+    +  M+
Sbjct:   459 KIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMI 518

Query:   522 RRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNI 581
               F  LL Y++D + RPK  +L  TM + LQD++ +PR+FSYSLE++I PR  ++    +
Sbjct:   519 ADFPMLLRYNVDNL-RPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRV 577

Query:   582 ECSLEEMLGKNDDEF 596
                L  ML   D+EF
Sbjct:   578 NFKLRYMLACTDEEF 592

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 79/241 (32%), Positives = 134/241 (55%)

Query:   364 VFNEEKV--PKLSVD--RAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQ 419
             +F E+ +    L+VD  +A+R  P L     S +  +   L   G+    +G+++   P 
Sbjct:    31 LFREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPD 90

Query:   420 LLLRKPQ-EFRQVVSFLE-DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIG-I 476
             LL   P+ E   V+ FL  ++    +++ + + RCP L  S+++  L   + FL  +G +
Sbjct:    91 LLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFV 150

Query:   477 SKDHLPRTIKKYPELLVSDVDRTLLPRIKYLME-MGLSKRDIAFMVRRFSPLLGYSIDEV 535
              +D +     +   LLVS+V+RTL+P+I+YL E +G ++ ++A MV R   LL YS+D  
Sbjct:   151 GRDTIT---SRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNN 207

Query:   536 FRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDE 595
               PK+ F +  M   ++++  +P+YFS+SLE+KIKPR  +LK   I   L EML  +D +
Sbjct:   208 LVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQ 267

Query:   596 F 596
             F
Sbjct:   268 F 268

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
 Identities = 79/260 (30%), Positives = 127/260 (48%)

Query:   347 PWILSTSIQENYEEILSVFNEEKV---PKLSVD--RAIRSWPHLLGCSTSKLKLMLDQLG 401
             P + ST+      E L     EK+     L +D    I   P LL  + S ++ ++D + 
Sbjct:    54 PSLSSTTTTTTTTETLESSIHEKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMT 113

Query:   402 E--LGVENKKLGQVIAKSPQLLLRKPQEFR-QVVSFL-EDVGFDRE-NVGRILGRCPELF 456
                +    +   ++++  P+LL          V++FL  +VG D   ++ + L R P L 
Sbjct:   114 TPPINFTLQDFRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLL 173

Query:   457 ASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRD 516
             A +++  L   + FL  IGI   H      K+  LL   VD  L+PRI Y  ++G S+R 
Sbjct:   174 ACSVDHQLRPTLYFLQRIGILDPH------KHTYLLSCSVDNKLVPRIDYFEKLGFSRRS 227

Query:   517 IAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVL 576
                M +RF  L  YSI E + PKL +L+  M + +++V+ +P+YFS+SLE +IKPR    
Sbjct:   228 ATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEAC 287

Query:   577 KGRNIECSLEEMLGKNDDEF 596
               + +   L  ML  N+  F
Sbjct:   288 AAKGVRFPLPVMLKTNEAGF 307

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 70/232 (30%), Positives = 123/232 (53%)

Query:   377 RAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQ-EFRQVVSFL 435
             +A+   P L       ++ +L  L   G+    L +++   P++L    + E   V  FL
Sbjct:    71 KALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFL 130

Query:   436 E-DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVS 494
               D+        R++ +CP L  S++E  L   + +L  +G+ KD L     + P LLVS
Sbjct:   131 SNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGL-KD-LEALAYQDPILLVS 188

Query:   495 DVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDV 554
              V+ TL+P++++L  +G S+ +   M+ R   L  +SI+  F+PKL + ++ ++  L+++
Sbjct:   189 SVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENL 248

Query:   555 VAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAPSA 606
               +P+YF++SLEK+IKPR      R +E  L  ML   D+EF  + L  PS+
Sbjct:   249 KEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFE-QLLTNPSS 299

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 65/277 (23%), Positives = 132/277 (47%)

Query:   321 AIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIR 380
             A+R + L   ++G     +  +  K+      S+    + ++    +  +PK  +   + 
Sbjct:   195 ALRPQTLYLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILC 254

Query:   381 SWPHLLGCS-TSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVG 439
               P + G S T  LK  +  L  LG++  +  ++I++ P +L    Q+    V FL   G
Sbjct:   255 KRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQKLTSTVEFLSQTG 314

Query:   440 FDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRT 499
                E +GRIL RCP + + ++E  L   +++   + +    L   + + P+     ++  
Sbjct:   315 LTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVL---LHRCPQTFGLSIESN 371

Query:   500 LLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPR 559
             L P  ++ +E G    +I  M+ R+  L  +S+ E   PK  +   TM+    ++V +P+
Sbjct:   372 LKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQ 430

Query:   560 YFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEF 596
             +F YSL+++IKPR+ +++   +   L ++L  +  EF
Sbjct:   431 FFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEF 467

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 2.6e-21, P = 2.6e-21
 Identities = 71/256 (27%), Positives = 130/256 (50%)

Query:   353 SIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCST-SKLKLMLDQLGELGVENKKLG 411
             S QE  + +LSV     V    + R +   P +L  +  + LK  +  L  LG+ N K+G
Sbjct:   218 SAQERLDYLLSV----GVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIG 273

Query:   412 QVIAKSPQLLLRKPQE-FRQVVSFL-EDVGFDRENVGRILGRCPELFASNIERTLMKKID 469
             Q++A +P L     +   R  + +L E+VG    +VG+++   P++    ++ T   +  
Sbjct:   274 QIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYM 333

Query:   470 FLIG-IGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLL 528
             FL   +G  +D + + +KK+P+LL   +D   LPRI +L  +G+   DI  ++   + +L
Sbjct:   334 FLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVL 393

Query:   529 GYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVL----KGRNIECS 584
               S+++  +PK  +L+N +   +  +  YP Y S SL+++I+PR   L    K R     
Sbjct:   394 SLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKGPFP 453

Query:   585 LEEMLGKNDDEFATEF 600
             L  ++  ND+ F  ++
Sbjct:   454 LSSLV-PNDESFCQQW 468

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 74/329 (22%), Positives = 158/329 (48%)

Query:   272 VESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAF-E 330
             +  +P +L  S   ++ PV+ +LE +G+ +  +G  +  +P ++  ++       + F  
Sbjct:   129 INEYPLMLGCSVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLR 188

Query:   331 EIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCST 390
              +     D+G +L+KYP +L   ++      ++      V    +   +  +P+LLG   
Sbjct:   189 GLDVEKQDLGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYLLGMRV 248

Query:   391 -SKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQE-FRQVVSFLEDVGFDRENVGRI 448
              + +K ++D L  +G+  K + +++ K   ++    +E  +  V  L   G  +E +  +
Sbjct:   249 GTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLL 308

Query:   449 LGRCPELFASNIERTLM-KKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYL 507
             + + P++    ++  +  ++  F + + I  +   R ++K P++ VS     ++  I++L
Sbjct:   309 IAQYPQILGLPVKAKMSTQQYFFSLKLKIDPEGFARVVEKMPQI-VSLKQNVIMKPIEFL 367

Query:   508 MEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEK 567
             +       DIA MV R   +L   + E+ +    F    M + ++++V YP YF+YSLE 
Sbjct:   368 LGRAFQVEDIAKMVVRCPQILCSRV-ELMKNSYYFYKTEMGRPMKELVEYPEYFTYSLES 426

Query:   568 KIKPRFWVLKGRNIECSLEEMLGKNDDEF 596
             +IKPR+  L+ + I  SL   L  +D  F
Sbjct:   427 RIKPRYQKLQSKGIRSSLNWFLNCSDQRF 455

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 56/200 (28%), Positives = 107/200 (53%)

Query:   404 GVENKKLGQVIAKSPQLLLRK--PQEFRQVVSFLE-DVGFDRENVGRILGRCPELFASNI 460
             G+ ++   +++   PQL        +   V  FL  ++G   E    ++  CP +  S++
Sbjct:    76 GISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNCPNILFSDV 135

Query:   461 ERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFM 520
             E  L   + +L  +G+   +L R  K    +L + V++ L  ++++L  +G    + A +
Sbjct:   136 EYCLRPTLVYLKELGVR--NLNRASKTNAHVLNTRVEK-LRAKMRFLKSIGFEHEEAARV 192

Query:   521 VRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRN 580
               R   + GYS+++  RPK  FL+  ME+ L+++  +P+YF++SL K+I+PR W LK +N
Sbjct:   193 CGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKN 252

Query:   581 IECSLEEMLGKNDDEFATEF 600
             +  SL  ML   D +F +++
Sbjct:   253 VRVSLSRMLMWGDQKFYSKW 272

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.8e-19, P = 3.8e-19
 Identities = 57/196 (29%), Positives = 105/196 (53%)

Query:   379 IRSWPHLLGCSTSKLKL-MLDQLGELGVENKKLGQVIAKSPQLLLRKPQ-EFRQVVSFLE 436
             I ++P +LGCS  K  + +LD LG+LGV      + + + PQ+L      +   VV +L+
Sbjct:   164 INNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYLQ 223

Query:   437 DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDV 496
              +     +V R+L R PE+    +E T+   + +L+GIG+++  +   + +YPE+L   V
Sbjct:   224 GLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRV 283

Query:   497 DRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFL--LNTMEKSLQDV 554
              R + P ++YL  +G+ +   A ++ +   +LG+ +D+  +P +  L   N  E SL  +
Sbjct:   284 ARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSI 343

Query:   555 VA-YPRYFSYSLEKKI 569
             +A YP      L+ K+
Sbjct:   344 IAQYPEIIGIDLKPKL 359

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029636001 SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (601 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	610
pfam02536	345	pfam02536, mTERF, mTERF	6e-68
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	7e-34
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-21
pfam02536	345	pfam02536, mTERF, mTERF	2e-05
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-04

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  224 bits (572), Expect = 6e-68
 Identities = 105/356 (29%), Positives = 174/356 (48%), Gaps = 19/356 (5%)

Query: 249 EKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVL 308
             +    G  D L S+       +  +P LL   AE +++P + FL+  G  K  +  ++
Sbjct: 1   LSLLRSLGFTDSLISTI------IRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIV 54

Query: 309 LLFPPLIF-WNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNE 367
              P ++    +K+I +     ++I   D D    L KYP  L      N    +SV  E
Sbjct: 55  STVPKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRE 114

Query: 368 EKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLR-KPQ 426
             VP   +  ++        C     +  L ++ E+G +     +VIAK P+LLL    +
Sbjct: 115 LGVPP-KLLFSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDK 173

Query: 427 EFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIK 486
             +  V FL+ +GF  E+V  IL +CPEL  S+ ++ L  +        +        IK
Sbjct: 174 TIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLL---EFLSVIK 230

Query: 487 KYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNT 546
           K P+ +    ++ +L +I++L+ +G S+ +IA MV+R   LLG S+++V + K  FL+  
Sbjct: 231 KMPQFVSYS-EQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKV-KKKTEFLVKE 288

Query: 547 MEKSLQDVVAYPRYFSYSLEKKIKPRFWVL-----KGRNIECSLEEMLGKNDDEFA 597
           M   L+++V +P+ F YSLEK+IKPR  V+     KG++I  SL  ML   D+EF 
Sbjct: 289 MNWPLKELVEFPQVFGYSLEKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEFL 344

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  134 bits (340), Expect = 7e-34
 Identities = 92/345 (26%), Positives = 166/345 (48%), Gaps = 46/345 (13%)

Query: 258 LDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFW 317
           L+ LG + +S   L+  +P++L  S    + PVV +L+ + V +  +  VL  +P L+ +
Sbjct: 131 LEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGF 190

Query: 318 NIKAIRTKALAF-EEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVD 376
            ++   + ++A+   IG    D+G ML ++P IL   +  N +  +       +P+L+V 
Sbjct: 191 KLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVA 250

Query: 377 RAIRSWPHLLGCS-TSKLKLMLDQLGELGVENKKLGQVIAKSPQLL---LRKPQEFRQVV 432
           R +   P++LG      +K  ++ L E GV  + L  VIA+ P +L   L+     +Q  
Sbjct: 251 RILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQ-- 308

Query: 433 SFLE-DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPEL 491
            +L   +  D E+ GR++ + P++ + N     +K ++FL G G S              
Sbjct: 309 YWLTSKLKIDPEDFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQ------------ 355

Query: 492 LVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSL 551
                                   D+A MV R   +L  ++ E+ +P L F    M++ L
Sbjct: 356 ------------------------DVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPL 390

Query: 552 QDVVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEF 596
           +++V +P YF+Y LE +IKPR+  +  + I+CSL   L  +DD+F
Sbjct: 391 KELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKF 435

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 55/196 (28%), Positives = 106/196 (54%), Gaps = 5/196 (2%)

Query: 379 IRSWPHLLGCSTSK-LKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQ-EFRQVVSFLE 436
           I  +P +LGCS  K +  +LD L +LGV    L +++ + PQ+L      +   VV +L+
Sbjct: 109 INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQ 168

Query: 437 DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDV 496
            +   R+++ R+L R PEL    +E T+   + +L+ IG++   +   + ++PE+L   V
Sbjct: 169 GLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRV 228

Query: 497 DRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLL--NTMEKSLQDV 554
              + P++ YL  +GL +  +A ++ +   +LG+ ++E  +P +  LL     +++L  V
Sbjct: 229 GNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSV 288

Query: 555 VA-YPRYFSYSLEKKI 569
           +A YP      L+ K+
Sbjct: 289 IAQYPDILGLDLKAKL 304

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 49/258 (18%)

Query: 172 KVAFLESLGLSLSSAISIARSLSGEPLPPLIHK---------VKYMKEIFFSGSNTERTL 222
           K+ FL+S G S S    I  ++     P ++ K           ++K+I  +  +    L
Sbjct: 36  KLQFLQSRGASKSELTKIVSTV-----PKILGKKGVKSISSVYDFLKKIIVADLDKSSKL 90

Query: 223 GK--------NGRRMMKHLSIPIDEDVQQTLAF------------FEKIEARRGGLDMLG 262
            K        N    ++++S+  +  V   L F             E  E     +  +G
Sbjct: 91  EKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVCGKEVFEESLKKVVEMG 150

Query: 263 SSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAI 322
               +F+ ++   PRLLL S++  +KP V+FL+ +G   + +  +L   P L+  + K  
Sbjct: 151 FDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKK 210

Query: 323 RTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQ------ENYEEILSVFNEEKVPKLSVD 376
                  +  G +  +   ++ K P  +S S Q      E    +   F+ E++ K+   
Sbjct: 211 LQTQEILKTCGLL--EFLSVIKKMPQFVSYSEQKILNKIEFLLGL--GFSREEIAKM--- 263

Query: 377 RAIRSWPHLLGCSTSKLK 394
             ++  P LLG S  K+K
Sbjct: 264 --VKRCPQLLGLSVEKVK 279

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 467 KIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSP 526
           +++FL  +G++ +     I +YP +L   V + ++P + YL ++G+++  +  ++RR+  
Sbjct: 95  RVEFLHKLGLTIED----INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQ 150

Query: 527 LLGYSIDEVFRPKLAFLLNTMEKSLQDV----VAYPRYFSYSLE 566
           +L  S+     P + +L   ++   QD+      YP    + LE
Sbjct: 151 VLHASVVVDLAPVVKYLQG-LDVKRQDIPRVLERYPELLGFKLE 193

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	610
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.84
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.41
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.18
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	88.73
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	88.11

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.4e-60  Score=524.43  Aligned_cols=349  Identities=23%  Similarity=0.468  Sum_probs=337.4

Q ss_pred             hhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecCH-HH
Q 007270          243 QTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNI-KA  321 (610)
Q Consensus       243 ~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~-~~  321 (610)
                      +++.||++          +|+++++|.    ++|.+|.+++++++.|+++||.++|++..+|++++.++|.+|.++. .+
T Consensus        94 ~~l~~L~s----------~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~  159 (487)
T PLN03196         94 ERVEFLHK----------LGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVD  159 (487)
T ss_pred             HHHHHHHH----------cCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHH
Confidence            45788887          699999996    6999999999999999999999999999999999999999999998 68


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCCh-hHHHHHHHHH
Q 007270          322 IRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCST-SKLKLMLDQL  400 (610)
Q Consensus       322 L~~~l~~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~-~~l~~~l~~L  400 (610)
                      +.|+++||+++|++++++.+++.++|++|+.++++.+.+.++||+++|++.++|++++.++|++|+++. +++++.+++|
T Consensus       160 L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL  239 (487)
T PLN03196        160 LAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYL  239 (487)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998 7899999999


Q ss_pred             HHcCCChhHHHHHHHhCCcccccCch-hHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH-HcCCCC
Q 007270          401 GELGVENKKLGQVIAKSPQLLLRKPQ-EFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI-GIGISK  478 (610)
Q Consensus       401 ~elG~~~~~l~~il~~~P~lL~~s~~-~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~-~lGls~  478 (610)
                      +++|++.+.+++++.++|++|..+.+ ++.+++++|+++|++++++..+++++|.++..++++++.++++||. ++|++.
T Consensus       240 ~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~  319 (487)
T PLN03196        240 ESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDP  319 (487)
T ss_pred             HHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCH
Confidence            99999999999999999999999987 7999999999999999999999999999999999999999999996 699999


Q ss_pred             CcHHHHHhhCCccccccccccchhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhhcC
Q 007270          479 DHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYP  558 (610)
Q Consensus       479 ~~i~~~I~~~P~iL~~sle~~L~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~~P  558 (610)
                      +++.+++.++|.+++.|. ++|++|++||+++||+.++|..||+++|+||++|.+ +|++|++||+++||++.++|+++|
T Consensus       320 e~i~~~v~k~P~il~lSe-~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~-~l~~k~dFlvneMg~~~~~Iv~fP  397 (487)
T PLN03196        320 EDFGRVIEKLPQIVSLNR-NVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLE-IMKPSLEFFKKEMKRPLKELVEFP  397 (487)
T ss_pred             HHHHHHHHhcchhhcccH-HHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHH-HHHHHHHHHHHHhCCCHHHHHhCh
Confidence            999999999999999995 589999999999999999999999999999999997 599999999999999999999999


Q ss_pred             ccccccccchHHhHHHHHHhcCCCCChHHhhcCChHHHHhhccccCCCC
Q 007270          559 RYFSYSLEKKIKPRFWVLKGRNIECSLEEMLGKNDDEFATEFLLAPSAH  607 (610)
Q Consensus       559 ~~L~ySlekRI~pR~~vL~~~Gl~~sl~~vL~~sdk~F~~~yV~~y~~~  607 (610)
                      +||+||+|+||+|||++|+++|++++|.++|.|||++|+++||.+|.|-
T Consensus       398 ~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~F~~r~v~~y~e~  446 (487)
T PLN03196        398 AYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMSGDFIEG  446 (487)
T ss_pred             HHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHHHHHHHhhhcccc
Confidence            9999999999999999999999999999999999999999999999873

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1.4e-52  Score=446.03  Aligned_cols=332  Identities=37%  Similarity=0.649  Sum_probs=261.4

Q ss_pred             CCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecC-HHHHHHHHHHHHHhCCChHHH
Q 007270          261 LGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWN-IKAIRTKALAFEEIGAVDNDV  339 (610)
Q Consensus       261 lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s-~~~L~~~l~~L~~lG~s~~~v  339 (610)
                      +||++++|.++++++|.+|.+++++++.|+++||++.|++..+|++++..+|.|+.++ .+.+.+.+++|+++|++++++
T Consensus         7 ~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~   86 (345)
T PF02536_consen    7 HGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDI   86 (345)
T ss_dssp             HHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHH
T ss_pred             cCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHH
Confidence            6999999999999999999999999999999999999999999999999999999999 489999999999999999999


Q ss_pred             HHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCChhHHHHHHHhCCc
Q 007270          340 GKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQ  419 (610)
Q Consensus       340 ~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~~~P~  419 (610)
                      ++++.++|++|..+.+.++.+++++|+++|++.+.+..++..+|..+... +++++.++++.++|++++.+++++..+|.
T Consensus        87 ~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~-~~~~~~v~~l~~lG~~~~~~~~vi~~~P~  165 (345)
T PF02536_consen   87 VKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS-EKIKERVEFLKELGFDPEKIGRVIAKNPR  165 (345)
T ss_dssp             HHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS--HHHHCHHHHHCCCTSSHHHHCCCHHHHHH
T ss_pred             HHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch-hHHHHHHHHHHHhCCCchhhcccccccch
Confidence            99999999999998888999999999999999998999999998866655 89999999999999999999999999996


Q ss_pred             ccccC-chhHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcCCCCCcHHHHHhhCCccccccccc
Q 007270          420 LLLRK-PQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDR  498 (610)
Q Consensus       420 lL~~s-~~~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lGls~~~i~~~I~~~P~iL~~sle~  498 (610)
                      ++... .+.+.++++||+++|++.+++.+++.++|.++..+.++.++....++...|...+   +++.++|.++.++. +
T Consensus       166 ~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il~~~~-~  241 (345)
T PF02536_consen  166 LLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQILSLSE-E  241 (345)
T ss_dssp             HHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------THHH-H
T ss_pred             hhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---ccccccccccccch-H
Confidence            66555 4579999999999999999999999999999999988666665555544554444   89999999999995 5


Q ss_pred             cchhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhhcCccccccccchHHhHHHH---
Q 007270          499 TLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWV---  575 (610)
Q Consensus       499 ~L~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~~P~~L~ySlekRI~pR~~v---  575 (610)
                      ++.+++++|.++|++.+++..|++++|++|++|.|+ +++|++||+++||++.++|+++|++|+||+|+||+|||++   
T Consensus       242 ~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~  320 (345)
T PF02536_consen  242 KLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKV  320 (345)
T ss_dssp             HHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHH
Confidence            899999999999999999999999999999999997 9999999999999999999999999999999999999655   


Q ss_pred             HHhcC--CCCChHHhhcCChHHHHh
Q 007270          576 LKGRN--IECSLEEMLGKNDDEFAT  598 (610)
Q Consensus       576 L~~~G--l~~sl~~vL~~sdk~F~~  598 (610)
                      |+.+|  ..+++.+|+.+||++|++
T Consensus       321 l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  321 LKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             T--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             HHHCcCCCCCCHHHHhhccHHHhcC
Confidence            55678  689999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=405.22  Aligned_cols=311  Identities=23%  Similarity=0.452  Sum_probs=288.4

Q ss_pred             hhhhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecCH-
Q 007270          241 VQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNI-  319 (610)
Q Consensus       241 a~~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~-  319 (610)
                      ..+++.||++          +|+++++|+++|.++|++|.+++++++.|+++||+++|++.++|++++.++|++|.++. 
T Consensus       124 l~Pvl~fL~~----------lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e  193 (487)
T PLN03196        124 MIPVLDYLEK----------LGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLE  193 (487)
T ss_pred             hHHHHHHHHH----------cCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHH
Confidence            3457899987          69999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCCh-hHHHHHHH
Q 007270          320 KAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCST-SKLKLMLD  398 (610)
Q Consensus       320 ~~L~~~l~~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~-~~l~~~l~  398 (610)
                      +.+.++++||+++|++.+++.+++.++|++|+.+++++++|+++||+++|++.++|++++.++|++++++. +++++.++
T Consensus       194 ~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~  273 (487)
T PLN03196        194 GTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVE  273 (487)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999998 59999999


Q ss_pred             HHHHcCCChhHHHHHHHhCCcccccCch-hHHHHHHHH-HHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcCC
Q 007270          399 QLGELGVENKKLGQVIAKSPQLLLRKPQ-EFRQVVSFL-EDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGI  476 (610)
Q Consensus       399 ~L~elG~~~~~l~~il~~~P~lL~~s~~-~i~~kv~fL-~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lGl  476 (610)
                      +|+++|++++.+++++.++|.++..+.+ ++.++++|+ +++|++++++..++.++|++++.+. ++++++++||+++|+
T Consensus       274 ~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe-~kl~~kvefL~~~Gl  352 (487)
T PLN03196        274 CLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNR-NVALKHVEFLRGRGF  352 (487)
T ss_pred             HHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccH-HHHHHHHHHHHHcCC
Confidence            9999999999999999999999998876 688999999 5899999999999999999999994 589999999999999


Q ss_pred             CCCcHHHHHhhCCccccccccccchhHHHHHH-HhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCC--ChhH
Q 007270          477 SKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEK--SLQD  553 (610)
Q Consensus       477 s~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~--~~~~  553 (610)
                      +.++|.+|++++|++|++|. +.|++|++||. ++|++.++|    .++|++|+||.|++|+||+.+|.+ -|+  ++..
T Consensus       353 s~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~I----v~fP~~LsySLEkRI~PR~~~L~~-kGl~~sL~~  426 (487)
T PLN03196        353 SAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKEL----VEFPAYFTYGLESRIKPRYERVAK-KGIKCSLAW  426 (487)
T ss_pred             CHHHHHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHH----HhChHHhccChhhhhHHHHHHHHH-cCCCCCHHH
Confidence            99999999999999999997 69999999999 599999987    999999999999899999999985 464  3444


Q ss_pred             HhhcCccccccccchHHhHHHH
Q 007270          554 VVAYPRYFSYSLEKKIKPRFWV  575 (610)
Q Consensus       554 Iv~~P~~L~ySlekRI~pR~~v  575 (610)
                      ++.++       |+++.-|+..
T Consensus       427 ~L~~s-------d~~F~~r~v~  441 (487)
T PLN03196        427 FLNCS-------DDKFEQRMSG  441 (487)
T ss_pred             HhccC-------HHHHHHHHhh
Confidence            44444       6788877743

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=5.9e-37  Score=325.99  Aligned_cols=285  Identities=25%  Similarity=0.495  Sum_probs=217.3

Q ss_pred             hhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecCH-HH
Q 007270          243 QTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNI-KA  321 (610)
Q Consensus       243 ~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~-~~  321 (610)
                      +++.||.+          .|++.++|++++.++|.+|..+.++++.|.+++|+++|.+++++++++.++|++|..+. +.
T Consensus        35 pk~~fl~s----------~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~  104 (345)
T PF02536_consen   35 PKLEFLRS----------LGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEEN  104 (345)
T ss_dssp             HHHHHHHH----------TT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HH
T ss_pred             HHHHHHHH----------CCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhh
Confidence            35889988          49999999999999999999998899999999999999999999999999999998766 57


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCCh-hHHHHHHHHH
Q 007270          322 IRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCST-SKLKLMLDQL  400 (610)
Q Consensus       322 L~~~l~~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~-~~l~~~l~~L  400 (610)
                      +.+++.+|+++|++.+.+.+++...|.++...  +.+.+.+++|.++|++.+++.+++..+|+++.+.. +.+++.+++|
T Consensus       105 l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L  182 (345)
T PF02536_consen  105 LSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFL  182 (345)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHH
T ss_pred             hhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHH
Confidence            99999999999999998889998888866555  67999999999999999999999999997666554 8999999999


Q ss_pred             HHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcCCCCCc
Q 007270          401 GELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDH  480 (610)
Q Consensus       401 ~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lGls~~~  480 (610)
                      +++|++.+++.+++.++|.++..+.+++.+.+.++...|...++  .++.++|.++..+. .+++++++||.++|++.++
T Consensus       183 ~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~--~~i~~~p~il~~~~-~~l~~~i~~L~~lG~s~~e  259 (345)
T PF02536_consen  183 RSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE--RVIKKFPQILSLSE-EKLKPKIEFLQSLGFSEEE  259 (345)
T ss_dssp             HHCTT-GHHHHHHHHHTTTGGGCGCHC-----------------------------THHH-HHHHHHHHHHHTTT--HHH
T ss_pred             HhhcccchhhhHHhhcccceeccccccccccccccccccccccc--ccccccccccccch-HhHHHHHHHHHHhcCcHHH
Confidence            99999999999999999999999998866666666655555544  88999999999984 5899999999999999999


Q ss_pred             HHHHHhhCCccccccccccchhHHHHHH-HhCCCHHHHHHHHHhcCcccccChhhhHHHH---HHHHHHHcC
Q 007270          481 LPRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPK---LAFLLNTME  548 (610)
Q Consensus       481 i~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~k---i~fL~~~mG  548 (610)
                      |.+|+.++|.+|++|.+ .+++|++||. ++|++.++|    .++|++|+||.|++|+||   +.+|.+ .|
T Consensus       260 i~~mv~~~P~iL~~s~e-~l~~k~~fl~~~m~~~~~~i----~~~P~~l~~sLe~ri~PR~~~~~~l~~-~g  325 (345)
T PF02536_consen  260 IAKMVRRFPQILSYSIE-KLKPKFEFLVKEMGLPLEEI----VEFPQYLSYSLEKRIKPRYEVLKVLKS-KG  325 (345)
T ss_dssp             HHHHHHHSGGGGGS-HH-HHHHHHHHHHHCCT--HHHH----HHSCHHHCS-HHHHHHHHHHHHHTT---TT
T ss_pred             HHHHHHhCcchhhcchh-hhhHHHHHHHHHhCcCHHHH----hhCCceeEechhhhhhhHHHHHHHHHH-Cc
Confidence            99999999999999987 5999999998 599999998    899999999999899999   555554 45

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.97  E-value=9.6e-32  Score=292.75  Aligned_cols=314  Identities=29%  Similarity=0.533  Sum_probs=275.4

Q ss_pred             hhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecCH-HHH
Q 007270          244 TLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNI-KAI  322 (610)
Q Consensus       244 vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~-~~L  322 (610)
                      ++.++++          +|+++++|.+++..+|.++.++.++.+.+++.+|++.|++.+.++++++..|.+|..+. ..+
T Consensus        94 ~~~~l~s----------~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~  163 (413)
T KOG1267|consen   94 VLSSLRS----------LGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESL  163 (413)
T ss_pred             HHHHHHh----------cCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCch
Confidence            5888887          69999999999999999999999999999999999999999999999999899888554 689


Q ss_pred             HHHHHHHHHhC--CChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHH
Q 007270          323 RTKALAFEEIG--AVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQL  400 (610)
Q Consensus       323 ~~~l~~L~~lG--~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L  400 (610)
                      ...++|+.+++  .....+.+++...|...   ...+-.+++++++++|+...++...+..+|....... .+...+.++
T Consensus       164 ~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~---~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~-~l~~~~~~i  239 (413)
T KOG1267|consen  164 STFIEFLKSIPPELLSSVVERLLTPVPSFL---LNENSVERLDIRRELGVKPRLLKSLLESQPRPVLLYL-KLKARLPFL  239 (413)
T ss_pred             hhHHHHhhccchhhhhhHHHHhcccccccc---ccccccccchhhHHhCCCHHHHHHHHhcCccceeeeh-hhhhhhhhH
Confidence            99999999985  66666666655555322   2223334899999999999999999999998765432 788889999


Q ss_pred             HHcCCChhHHHHHHHhCCcccccCch-hHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcCCCCC
Q 007270          401 GELGVENKKLGQVIAKSPQLLLRKPQ-EFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKD  479 (610)
Q Consensus       401 ~elG~~~~~l~~il~~~P~lL~~s~~-~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lGls~~  479 (610)
                      .++|+++..  +++...|.++..+.+ ++++++++|+.+||+.+||+.+++++|+++..+.+ ++..+++++.+.   .+
T Consensus       240 ~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~-~~~~~~~~~~~~---~~  313 (413)
T KOG1267|consen  240 LTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVK-KNLKTTEYLLKN---PK  313 (413)
T ss_pred             HHhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehh-hhhHHHHHHHhc---ch
Confidence            999998887  788888888887765 79999999999999999999999999999999965 778888888876   22


Q ss_pred             cHHHHHhhCCccccccccccchhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhhcCc
Q 007270          480 HLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPR  559 (610)
Q Consensus       480 ~i~~~I~~~P~iL~~sle~~L~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~~P~  559 (610)
                      +    +.++|+++.++ +..+.++++|+...|++.+++.+|++++|+|+.++.++.++.+.+|+++.|+++.++++.+|+
T Consensus       314 ~----~~k~p~~l~~s-~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~  388 (413)
T KOG1267|consen  314 H----ILKFPQLLRSS-EDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPA  388 (413)
T ss_pred             h----hhhhhhhhhcc-chhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccch
Confidence            2    88999999777 578999999999999999999999999999999999966899999999999999999999999


Q ss_pred             cccccccchHHhHHHHHHhcCCC
Q 007270          560 YFSYSLEKKIKPRFWVLKGRNIE  582 (610)
Q Consensus       560 ~L~ySlekRI~pR~~vL~~~Gl~  582 (610)
                      ++.|++|+|++||+.++..++..
T Consensus       389 ~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  389 FFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             hhccchhhcchhHHHHHHHHhcc
Confidence            99999999999999998886643

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.84  E-value=1e-20  Score=206.38  Aligned_cols=327  Identities=20%  Similarity=0.356  Sum_probs=265.8

Q ss_pred             chHHHHHHHHhhcCCCccchhhhccCCCcchhhhhhhhcCCCCChhhhhhhhhhhhhhccCCCccccccchhhhhhhcCC
Q 007270          155 GFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLS  234 (610)
Q Consensus       155 ~~~~~~~~~~~~~p~n~~~~f~EslG~~~s~~~~~a~~~~~~~L~~l~~kv~fl~~~~~~~~d~~~~l~~~~~~~l~~~~  234 (610)
                      .....+..+...+|++.+. +++|+|++.+++.++..     .-|    ++.++        +++..+..          
T Consensus        78 ~~~~~~~~~~~~~p~s~~~-~l~s~g~~~~~i~s~i~-----~~p----~ll~~--------~~~~~l~~----------  129 (413)
T KOG1267|consen   78 KLSREVSSEDSVNPSSVLS-SLRSLGFTDSQISSIIL-----SSP----KLLYL--------SSENILKP----------  129 (413)
T ss_pred             HHHHHHHhhhccCcHHHHH-HHHhcCCchhhcccccc-----cCc----hhhhc--------cchhhhhh----------
Confidence            4556677888899999655 99999999999887333     112    22222        22111111          


Q ss_pred             CCCChhhhhhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcC--CChHHHHHHHhhCC
Q 007270          235 IPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVG--VPKDCMGNVLLLFP  312 (610)
Q Consensus       235 ~~~~~da~~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slG--is~~~I~~il~~~P  312 (610)
                               .+.++.+          .|++.+.+..++...|.+|....+.++.+.+++|.+.+  .....+.++....|
T Consensus       130 ---------~~~~l~~----------~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~  190 (413)
T KOG1267|consen  130 ---------KLRLLDS----------LGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVP  190 (413)
T ss_pred             ---------hhhhhhc----------cCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccc
Confidence                     1234443          49999999999999888888777788999999999985  88888888877776


Q ss_pred             CceecCHHHHHHHHHHHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCCh-h
Q 007270          313 PLIFWNIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCST-S  391 (610)
Q Consensus       313 ~IL~~s~~~L~~~l~~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~-~  391 (610)
                      .-.. ....+. +++++..+|...+++..++..+|.......  .+...+.++.+.|+.+..  +.+...|.+++++. +
T Consensus       191 ~~~~-~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~  264 (413)
T KOG1267|consen  191 SFLL-NENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEK  264 (413)
T ss_pred             cccc-cccccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccc
Confidence            4322 123444 899999999999999999999999886643  467778888889976665  77788899998876 8


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHH
Q 007270          392 KLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFL  471 (610)
Q Consensus       392 ~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL  471 (610)
                      .+++.++++.++||+.+++..++.++|.++..+.+++..+++++.+.   .++    +.++|+++..+ +..+.++++||
T Consensus       265 ~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~---~~~----~~k~p~~l~~s-~~~l~~~ie~l  336 (413)
T KOG1267|consen  265 TLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN---PKH----ILKFPQLLRSS-EDKLKPRIEFL  336 (413)
T ss_pred             cHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc---chh----hhhhhhhhhcc-chhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999877   333    78999999666 67999999999


Q ss_pred             HHcCCCCCcHHHHHhhCCccccccccccchhHHHHHH-HhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHH
Q 007270          472 IGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNT  546 (610)
Q Consensus       472 ~~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~  546 (610)
                      ..+|++..++.++++++|+++++++++.++.+.+++. .++++.+++    ..+|.+++|+.|+.+.+|....+..
T Consensus       337 ~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~----~~~p~~~~y~le~ri~pr~~~~~~~  408 (413)
T KOG1267|consen  337 LSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSAL----VSFPAFFGYSLEKRIRPRFNVIKKL  408 (413)
T ss_pred             HHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHH----hccchhhccchhhcchhHHHHHHHH
Confidence            9999999999999999999999999777888899998 599996655    8999999999999999999988753

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.41  E-value=0.0017  Score=43.10  Aligned_cols=28  Identities=32%  Similarity=0.729  Sum_probs=15.3

Q ss_pred             HHHhcCcccccChhhhHHHHHHHHHHHcCC
Q 007270          520 MVRRFSPLLGYSIDEVFRPKLAFLLNTMEK  549 (610)
Q Consensus       520 mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~  549 (610)
                      ++.++|.+|+++.+ .|+++++||. ++|+
T Consensus         3 ~~~~~P~il~~~~~-~l~~~~~~l~-~~g~   30 (31)
T smart00733        3 ILKKFPQILGYSEK-KLKPKVEFLK-ELGF   30 (31)
T ss_pred             hhhhCcCcccccHH-HhhHHHHHHH-HcCC
Confidence            44555665555533 3555666555 4554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.18  E-value=0.0043  Score=41.11  Aligned_cols=30  Identities=33%  Similarity=0.830  Sum_probs=25.4

Q ss_pred             HHHhhCCccccccccccchhHHHHHHHhCCC
Q 007270          483 RTIKKYPELLVSDVDRTLLPRIKYLMEMGLS  513 (610)
Q Consensus       483 ~~I~~~P~iL~~sle~~L~~kv~~L~~lG~s  513 (610)
                      +++.++|.+|+++ +++++++++||+++|++
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLKELGFS   31 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHHHcCCC
Confidence            5788899999998 67899999999988874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=88.73  E-value=1.6  Score=42.00  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHcCCChhhHHH
Q 007270          428 FRQVVSFLEDVGFDRENVGR  447 (610)
Q Consensus       428 i~~kv~fL~~lG~s~~~i~~  447 (610)
                      ....++.++..|++++++..
T Consensus       118 ~~~w~~l~~~~g~~~~~m~~  137 (172)
T cd04790         118 KEKWVAILKAAGMDEADMRR  137 (172)
T ss_pred             HHHHHHHHHHcCCChHHHHH
Confidence            34556666777777766543

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=88.11  E-value=3  Score=40.17  Aligned_cols=50  Identities=16%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHH
Q 007270          393 LKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRI  448 (610)
Q Consensus       393 l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~l  448 (610)
                      ....++.++..|+++..+.+.=..+-      ...-..-.+||.++|++++++..+
T Consensus       118 ~~~w~~l~~~~g~~~~~m~~wh~~fe------~~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         118 KEKWVAILKAAGMDEADMRRWHIEFE------KMEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHH------HhCcHHHHHHHHHcCCCHHHHHHH
Confidence            34556666777877766533322210      112235678899999998888654

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	610
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		9e-05
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		9e-05

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 393 LKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC 452
           +K ML  L ++G+E+ +LG  + K+  +     +  +  V++L    F + +V +++ + 
Sbjct: 69  IKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKA 128
Query: 453 PELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRI-------- 504
           P L   ++ER   +       +G  +  L  ++KK  +L+V       LPR+        
Sbjct: 129 PFLLNFSVERLDNR-------LGFFQKELELSVKKTRDLVVR------LPRLLTGSLEPV 175
Query: 505 -----KYLMEMGLSKRDIAFMVRRFSPLLGYS---IDEVFRPKLAFLLNTMEKSLQDVVA 556
                 Y +E+G    +I  M+ R   +L  +   + E F     F+ N M      +V 
Sbjct: 176 KENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETF----DFVHNVMSIPHHIIVK 231
Query: 557 YPRYFSYSLEKKIKPR--FWVLKGR 579
           +P+ F+  L  K+K R  F    GR
Sbjct: 232 FPQVFNTRL-FKVKERHLFLTYLGR 255

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 393 LKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC 452
           +K ML  L ++G+E+ +LG  + K+  +     +  +  V++L    F + +V +++ + 
Sbjct: 41  IKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKA 100
Query: 453 PELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRI-------- 504
           P L   ++ER   +       +G  +  L  ++KK  +L+V       LPR+        
Sbjct: 101 PFLLNFSVERLDNR-------LGFFQKELELSVKKTRDLVVR------LPRLLTGSLEPV 147
Query: 505 -----KYLMEMGLSKRDIAFMVRRFSPLLGYS---IDEVFRPKLAFLLNTMEKSLQDVVA 556
                 Y +E+G    +I  M+ R   +L  +   + E F     F+ N M      +V 
Sbjct: 148 KENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETF----DFVHNVMSIPHHIIVK 203
Query: 557 YPRYFSYSLEKKIKPR--FWVLKGR 579
           +P+ F+  L  K+K R  F    GR
Sbjct: 204 FPQVFNTRL-FKVKERHLFLTYLGR 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	610
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	6e-50
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-28
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	3e-15
3mva_O	343	Transcription termination factor, mitochondrial; a	4e-40
3mva_O	343	Transcription termination factor, mitochondrial; a	7e-29
3mva_O	343	Transcription termination factor, mitochondrial; a	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  173 bits (440), Expect = 6e-50
 Identities = 51/254 (20%), Positives = 105/254 (41%), Gaps = 12/254 (4%)

Query: 357 NYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSK-LKLMLDQLGELGVENKKLGQVIA 415
           ++ E L       V    +++   +   LL     K +K ML  L ++G+E+ +LG  + 
Sbjct: 4   DHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLT 63

Query: 416 KSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIG 475
           K+  +     +  +  V++L    F + +V +++ + P L   ++ER   +   F   + 
Sbjct: 64  KNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELE 123

Query: 476 ISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEV 535
           +S       + + P LL   ++        Y +E+G    +I  M+ R   +L  +  ++
Sbjct: 124 LSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKL 183

Query: 536 FRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLK---------GRNIECSLE 586
                 F+ N M      +V +P+ F+  L  K+K R   L           +    SL+
Sbjct: 184 -TETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLD 241

Query: 587 EMLGKNDDEFATEF 600
           +++   D+ F  E 
Sbjct: 242 KLVSIPDEIFCEEI 255

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  113 bits (285), Expect = 2e-28
 Identities = 48/262 (18%), Positives = 101/262 (38%), Gaps = 45/262 (17%)

Query: 258 LDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFW 317
           L +LG   +      E+   LL L  E  +K ++ FL+ VG+  + +G  L     +   
Sbjct: 12  LVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSE 71

Query: 318 NIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDR 377
           +++ ++T+            DV +M+ K P++                            
Sbjct: 72  DLENLKTRVAYLHSKNFSKADVAQMVRKAPFL---------------------------- 103

Query: 378 AIRSWPHLLGCSTSKLKLMLDQL-GELGVENKKLGQVIAKSPQLLLRKPQEF-RQVVSFL 435
                   L  S  +L   L     EL +  KK   ++ + P+LL    +     +  + 
Sbjct: 104 --------LNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYR 155

Query: 436 EDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG-IGISKDHLPRTIKKYPELLVS 494
            ++GF    +  ++ R P++  +N +  L +  DF+   + I        I K+P++  +
Sbjct: 156 LELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIP----HHIIVKFPQVFNT 210

Query: 495 DVDRTLLPRIKYLMEMGLSKRD 516
            + + +  R  +L  +G ++ D
Sbjct: 211 RLFK-VKERHLFLTYLGRAQYD 231

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 26/262 (9%)

Query: 172 KVAFLESLGLSLSSAISIARS----LSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGR 227
            +  L  LG+ LS       +    L  +    +   + ++K++    +     L KN  
Sbjct: 8   TLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHA 67

Query: 228 RMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHV 287
              + L     E+++  +A+                S A    +V   P LL  S E   
Sbjct: 68  IFSEDL-----ENLKTRVAYLHS----------KNFSKADVAQMVRKAPFLLNFSVERLD 112

Query: 288 KPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALA-FEEIGAVDNDVGKMLLKY 346
             +  F + + +      ++++  P L+  +++ ++        E+G   N++  M+ + 
Sbjct: 113 NRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRI 172

Query: 347 PWILSTSIQENYEEILS-VFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGV 405
           P +L+ +      E    V N   +P       I  +P +      K+K     L  LG 
Sbjct: 173 PKMLTANK-MKLTETFDFVHNVMSIPH----HIIVKFPQVFNTRLFKVKERHLFLTYLGR 227

Query: 406 ENKKLGQVIAKSPQLLLRKPQE 427
                 +    S   L+  P E
Sbjct: 228 AQYDPAKPNYISLDKLVSIPDE 249

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  149 bits (376), Expect = 4e-40
 Identities = 50/356 (14%), Positives = 121/356 (33%), Gaps = 52/356 (14%)

Query: 258 LDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFW 317
           L  L +         +  P +       + + +  FL   G  K+ + +++  +P  I  
Sbjct: 23  LKNLLTMGVDIDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITR 81

Query: 318 NIKAIRTKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDR 377
             + +  +   + +I   D ++  +L + P     S                        
Sbjct: 82  TPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNL------------------ 123

Query: 378 AIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLED 437
                           +  +  L  +G+  K L +++  +P+         +Q+V FL+ 
Sbjct: 124 ----------------ENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQA 167

Query: 438 VGFD------RENVGRILGRCPELFASNIERTLMKKIDFLIGI-GISKDHLPRTIKKYPE 490
            G         + V +I+ + P +   + +R +   I+FL     ++ + L   I     
Sbjct: 168 AGLSLGHNDPADFVRKIIFKNPFILIQSTKR-VKANIEFLRSTFNLNSEELLVLICGPGA 226

Query: 491 LLVS----DVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNT 546
            ++        R+     + L  +G ++ ++   V  +  ++  +  + F  K+  L+  
Sbjct: 227 EILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KKFNDKIDCLME- 284

Query: 547 MEKSLQDVVAYPRYFSYSLEKKIKPRFWVLK--GRNIECSLEEMLGKNDDEFATEF 600
              S+  ++  PR    S+   +K R   L   G N+      +L  +   +  + 
Sbjct: 285 ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKL 339

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  117 bits (293), Expect = 7e-29
 Identities = 44/245 (17%), Positives = 95/245 (38%), Gaps = 22/245 (8%)

Query: 363 SVFNEEKVPKLS-----VDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKS 417
            + NE+ +  L      +D A +  P +     +  + +   L   G   + +  +I++ 
Sbjct: 16  PLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRY 75

Query: 418 PQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPE-LFASNIERTLMKKIDFLIGIGI 476
           P+ + R P+   +       +      +  IL R PE  F SN    L   I FL  +G+
Sbjct: 76  PRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGL 135

Query: 477 SKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLS------KRDIAFMVRRFSPLLGY 530
           ++  L R +   P    + +D      +++L   GLS         +  ++ +   +L  
Sbjct: 136 TRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQ 194

Query: 531 SIDEVFRPKLAFLLNTMEKSLQDVVA-----YPRYFSYSLEKKIKPRFWVLK--GRNIEC 583
           S   V +  + FL +T   + ++++             S +   +  +  +K    ++ C
Sbjct: 195 STKRV-KANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSLGC 252

Query: 584 SLEEM 588
           + EE+
Sbjct: 253 TEEEV 257

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 59.7 bits (144), Expect = 8e-10
 Identities = 49/332 (14%), Positives = 100/332 (30%), Gaps = 72/332 (21%)

Query: 89  QAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEEWKSWSSSSVSNKNDVGNGDG 148
           Q +  +L   G S+E  A I S  P   + +  + ++L +                    
Sbjct: 52  QDLKMFLLSKGASKEVIASIISRYP---RAITRTPENLSK-------------------- 88

Query: 149 EESVLIGFKEKVVRMAKEKGDNGKVAFLESLGLSLSSAISIARS-----LSGEPLPPLIH 203
                                  +      +  S    ++I                L +
Sbjct: 89  -----------------------RWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLEN 125

Query: 204 KVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGS 263
            +K++  +  +     R L    R     L     +  +Q + F +      G       
Sbjct: 126 NIKFLYSVGLTRKCLCRLLTNAPRTFSNSL-----DLNKQMVEFLQAAGLSLGH----ND 176

Query: 264 SDASFRYLVESFPRLLLLSAESHVKPVVDFL-EIVGVPKDCMGNVLLLFPPLIF-WNIKA 321
                R ++   P +L+ S    VK  ++FL     +  + +  ++      I   +   
Sbjct: 177 PADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDY 235

Query: 322 IRTKALAFEE----IGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDR 377
            R      +E    +G  + +V K +L YP ++  +  + + + +    EE +       
Sbjct: 236 ARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KKFNDKIDCLMEENISI----S 290

Query: 378 AIRSWPHLLGCSTSKLKLMLDQLGELGVENKK 409
            I   P +L  S S LK  + +L   G     
Sbjct: 291 QIIENPRVLDSSISTLKSRIKELVNAGCNLST 322

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 3e-12
 Identities = 92/634 (14%), Positives = 179/634 (28%), Gaps = 222/634 (35%)

Query: 69  NAPSDQSQSQSQSHSLTLTQQAIYDYLSELGISQEDCAFISSNSPKYAQMLNDSVQDLEE 128
            +    S +     +L   Q+ +     E  + + +  F+ S                  
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMS---PIKTEQRQPSMMTRM 111

Query: 129 WKS-----WSSSSVSNKNDVGNGDGEESVLIGFKEKVVRMAKEK-------GDNGKVAFL 176
           +       ++ + V  K +V      +  L   ++ ++ +   K         +GK    
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSR---LQPYL-KLRQALLELRPAKNVLIDGVLGSGK---- 163

Query: 177 ESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIP 236
             +      A+ +  S   +       K+ ++        N+  T+ +    M++ L   
Sbjct: 164 TWV------ALDVCLSYKVQCKMD--FKIFWLN---LKNCNSPETVLE----MLQKLLYQ 208

Query: 237 IDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVES--FPRLLLLSAESHVKPVVDFL 294
           ID +          I+ R      + S  A  R L++S  +   LL         V+   
Sbjct: 209 IDPNWTSRSDHSSNIKLR------IHSIQAELRRLLKSKPYENCLL---------VLL-- 251

Query: 295 EIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEEIGAVDNDVG-KMLL--KYPWI-- 349
                      NV          N KA      AF        ++  K+LL  ++  +  
Sbjct: 252 -----------NV---------QNAKAWN----AF--------NLSCKILLTTRFKQVTD 279

Query: 350 -LSTSIQENY--EEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLK--------LMLD 398
            LS +   +   +        ++V  L     +  +   L C    L           L 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSL-----LLKY---LDCRPQDLPREVLTTNPRRLS 331

Query: 399 QLGEL------------GVENKKLGQVIAKSPQLLLRKPQEFRQV----VSFLEDV---- 438
            + E              V   KL  +I  S  +L  +P E+R++      F        
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPT 389

Query: 439 --------GFDRENVGRILGRCPELFASNIERTLMKK--IDFLIGI-GISKD-------- 479
                      + +V  ++ +         + +L++K   +  I I  I  +        
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKL-------HKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 480 ---HLPRTIKKYPELLVSDVDRTLLPRI-KY--------LMEMGLSKR---------DIA 518
              H    +  Y      D D  + P + +Y        L  +   +R         D  
Sbjct: 443 YALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 519 FM---VRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWV 575
           F+   +R  S     S           +LNT    LQ +  Y  Y          P++  
Sbjct: 502 FLEQKIRHDSTAWNAS---------GSILNT----LQQLKFYKPYIC-----DNDPKY-- 541

Query: 576 LKGRNIECSLEEMLGKNDDEFATEFLLAPSAHSH 609
                     E ++  N      +FL     +  
Sbjct: 542 ----------ERLV--NAIL---DFLPKIEENLI 560

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 57/345 (16%), Positives = 102/345 (29%), Gaps = 117/345 (33%)

Query: 265 DASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRT 324
           +   +  V+  P+ +L   E      +D   I+       G + L      FW    + +
Sbjct: 32  NFDCKD-VQDMPKSILSKEE------ID--HIIMSKDAVSGTLRL------FW---TLLS 73

Query: 325 KALAFEEIGAVDNDVGKMLLK-YPWILS---------TSIQENYEEILS-VFNE-EKVPK 372
           K    EE+  V   V ++L   Y +++S         + +   Y E    ++N+ +   K
Sbjct: 74  KQ---EEM--VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 373 LSVDRAIRSWPHLLGCSTSKLKLMLDQL---------GELGVENKKLGQVIAKSPQLLLR 423
            +V R              KL+  L +L         G LG      G    K+    + 
Sbjct: 129 YNVSR-----LQPY----LKLRQALLELRPAKNVLIDGVLGS-----G----KT---WV- 166

Query: 424 KPQEFRQVVSFLEDVGFDRENVGRI----LGRCPELFASNIERTLMKKIDFLIGIGISKD 479
                   +          +   +I    L  C      N   T+++ +           
Sbjct: 167 -------ALDVCLSYKVQCKMDFKIFWLNLKNC------NSPETVLEML----------- 202

Query: 480 HLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYS-----IDE 534
                     + L+  +D     R  +   + L    I   +RR      Y      +  
Sbjct: 203 ----------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 535 VFRPKL--AF------LLNTMEKSLQDVVAYPRYFSYSLEKKIKP 571
           V   K   AF      LL T  K + D ++       SL+     
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 76/460 (16%), Positives = 128/460 (27%), Gaps = 143/460 (31%)

Query: 196 EPLPPLIHKVKYMKEIFFSGSNTERT------LGKNGRRMMKH------------LSIPI 237
           + +P  I   + +  I  S      T      L      M++             L  PI
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 238 -DEDVQQTLAFFEKIEARRGGLDMLGSSDASFR-YLVESFPRLLLL-SAESHVKPVVDFL 294
             E  Q ++     IE R    D L + +  F  Y V      L L  A   ++P    +
Sbjct: 99  KTEQRQPSMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNV 153

Query: 295 EIVGVP---KDCMGN-------VLLLFPPLIFW-NIKAIRTKALAFEEIGAVDNDVGKML 343
            I GV    K  +         V       IFW N+K   +              V +ML
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-----------PETVLEML 202

Query: 344 LKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIR------SWPHLLGCSTSKLKLML 397
            K    L   I  N+       +  K+   S+   +R       + + L        L+L
Sbjct: 203 QK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------LVL 250

Query: 398 DQLGELGVENKKLGQVIAKSPQLLL--RKPQEFRQVVS------FLEDV--GFDRENVGR 447
                  V+N K       S ++LL  R  Q    + +       L+        + V  
Sbjct: 251 L-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 448 ILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYL 507
           +L +                      +      LPR +       +S +           
Sbjct: 306 LLLKY---------------------LDCRPQDLPREVLTTNPRRLSII----------- 333

Query: 508 MEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLE- 566
                S RD    +  +      + D+        L   +E SL             LE 
Sbjct: 334 ---AESIRD---GLATWDNWKHVNCDK--------LTTIIESSLN-----------VLEP 368

Query: 567 KKIKPRFWVL----KGRNIECSLEEMLGKNDDEFATEFLL 602
            + +  F  L       +I   L  ++  +  +     ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 64/424 (15%), Positives = 129/424 (30%), Gaps = 119/424 (28%)

Query: 47  VHHHKPFKI---NPLLCSSST-------NSSNNAPSDQSQSQSQSHSLTLTQQAIYDYLS 96
           V     FKI   N   C+S                 + +     S ++ L   +I   L 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 97  ELGISQEDCAFISSNSPKYAQMLN--DSVQDLEEWKSWSSSS---VSNKNDVGNGDGEES 151
            L          S     Y   L    +VQ+ + W +++ S    ++ +      D    
Sbjct: 236 RL--------LKS---KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTD---- 279

Query: 152 VLIGFKEKVVRMAKEKG----DNGKVAFLESLGLSLSS-----------AIS-IARSLSG 195
            L       + +         D  K   L+ L                  +S IA S+  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 196 EP------------------------LPPLIHKVKYMK-EIFFSGSN-TERTLGKNGRRM 229
                                     L P  ++  + +  +F   ++             
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-------- 391

Query: 230 MKHLSI----PIDEDVQQTLAFFEK---IEARRGG---------LDMLGSSDASF---RY 270
              LS+     I  DV   +    K   +E +            L++    +  +   R 
Sbjct: 392 ---LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 271 LVESFPRLLLLSAESHVKPVVD--FLEIVG--VPKDCMGNVLLLFPPLIFWN---IKA-I 322
           +V+ +       ++  + P +D  F   +G  +        + LF  ++F +   ++  I
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLEQKI 507

Query: 323 RTKALAFEEIGAVDNDVGKMLLKY-PWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRS 381
           R  + A+   G++ N + + L  Y P+I        YE +++    + +PK+  +  I S
Sbjct: 508 RHDSTAWNASGSILNTLQQ-LKFYKPYI--CDNDPKYERLVNAI-LDFLPKIEEN-LICS 562

Query: 382 WPHL 385
             + 
Sbjct: 563 -KYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 50/307 (16%), Positives = 95/307 (30%), Gaps = 105/307 (34%)

Query: 335 VDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLK 394
           +D + G+             Q  Y++ILSVF +  V                       K
Sbjct: 7   MDFETGEH------------QYQYKDILSVFEDAFVDNFDC------------------K 36

Query: 395 LMLDQLGELGVENKKLGQVIAKSPQ----------LLLRKPQEFRQVVSFLEDVGFDREN 444
            + D      + +K+    I  S             LL K +E   V  F+E+V   R N
Sbjct: 37  DVQDMP--KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQKFVEEV--LRIN 90

Query: 445 VG----RILGRCPELFASNIERTLMKKIDFLIGIG--ISKDHLPRTIKKYPELLVSDVDR 498
                  I     +   S + R  +++ D L       +K ++ R ++ Y +L      R
Sbjct: 91  YKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKL------R 141

Query: 499 TLLPRIK---YL----MEMGLSKRDIAFMVRRFSPLLGYSIDEVF--------RP----- 538
             L  ++    +    + +G  K  +A  V     +      ++F         P     
Sbjct: 142 QALLELRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 539 ---KLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRF-------------------WVL 576
              KL + ++    S  D  +  +   +S++ +++ R                       
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAW 259

Query: 577 KGRNIEC 583
              N+ C
Sbjct: 260 NAFNLSC 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	610
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.97
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.91
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.16
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.2
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	91.62
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	90.23
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	90.21
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	90.18
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	88.01
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	83.93
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	82.13
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	80.44

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=9.7e-47  Score=399.64  Aligned_cols=310  Identities=15%  Similarity=0.218  Sum_probs=268.6

Q ss_pred             hhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecCHHHH
Q 007270          243 QTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAI  322 (610)
Q Consensus       243 ~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~~~L  322 (610)
                      +|+.||.+          +|++.++   ++..+|.++..+++ +..++++||+++|++.++|++++.++|.+|.++.+++
T Consensus        21 ~~v~~L~s----------~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l   86 (343)
T 3mva_O           21 DLLKNLLT----------MGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENL   86 (343)
T ss_dssp             CHHHHHHH----------HTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHH
T ss_pred             HHHHHHHH----------cCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHH
Confidence            46899987          5999655   57778999888886 5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHhCCcc-cccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHH
Q 007270          323 RTKALAFEEIGAVDNDVGKMLLKYPWI-LSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLG  401 (610)
Q Consensus       323 ~~~l~~L~~lG~s~~~v~kll~~~P~l-L~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~  401 (610)
                      .++++||+++|++++++.+++.++|++ +..+.+++++++++||+++|++.++|++++.++|++++++.++.++.+++++
T Consensus        87 ~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~  166 (343)
T 3mva_O           87 SKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQ  166 (343)
T ss_dssp             HHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHH
Confidence            999999999999999999999999995 4555445899999999999999999999999999999999877788888888


Q ss_pred             HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCC--hhhHHHHHhccCcccccchhhHHHhHHHHHH-HcCCCC
Q 007270          402 ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFD--RENVGRILGRCPELFASNIERTLMKKIDFLI-GIGISK  478 (610)
Q Consensus       402 elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s--~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~-~lGls~  478 (610)
                      ++|++                               +|++  .+.|.+++.++|.++..+ +++++++++||+ ++|++.
T Consensus       167 ~lgv~-------------------------------~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~  214 (343)
T 3mva_O          167 AAGLS-------------------------------LGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNS  214 (343)
T ss_dssp             HHHHH-------------------------------TTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCH
T ss_pred             HhCCC-------------------------------cCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCH
Confidence            76652                               3333  445667777777777777 567777777777 377777


Q ss_pred             CcHHHHHhhC-CccccccccccchhHHHHHH----HhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhH
Q 007270          479 DHLPRTIKKY-PELLVSDVDRTLLPRIKYLM----EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQD  553 (610)
Q Consensus       479 ~~i~~~I~~~-P~iL~~sle~~L~~kv~~L~----~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~  553 (610)
                      +++.+++.+. |.++.++. +.++++++++.    ++||+.+|+..||.++|++|++|.|+ |++|++||++ ||++.++
T Consensus       215 ~~~~~~i~~~~~~~l~~s~-~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~-mg~~~~~  291 (343)
T 3mva_O          215 EELLVLICGPGAEILDLSN-DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLME-ENISISQ  291 (343)
T ss_dssp             HHHHHHHHTTTGGGGGCCT-THHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHT-TTCCHHH
T ss_pred             HHHHHHHhcCChHHhhccH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHHHH-cCCCHHH
Confidence            7777777664 47777775 47888887766    69999999999999999999999996 9999999999 9999999


Q ss_pred             HhhcCccccccccchHHhHHHHHHhcCCCCChH--HhhcCChHHHHhhccc
Q 007270          554 VVAYPRYFSYSLEKKIKPRFWVLKGRNIECSLE--EMLGKNDDEFATEFLL  602 (610)
Q Consensus       554 Iv~~P~~L~ySlekRI~pR~~vL~~~Gl~~sl~--~vL~~sdk~F~~~yV~  602 (610)
                      |+++|++|+||+| ||+|||.+|+++|+++++.  +||++||++|.++|..
T Consensus       292 i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          292 IIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             HHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHH
T ss_pred             HHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhc
Confidence            9999999999999 9999999999999998888  9999999999999853

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=6.5e-41  Score=343.49  Aligned_cols=247  Identities=21%  Similarity=0.354  Sum_probs=227.5

Q ss_pred             hHHHHHHHHHhCCCChHHHHHHHHhCCccccCCh-hHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHH
Q 007270          357 NYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCST-SKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFL  435 (610)
Q Consensus       357 ~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~-~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL  435 (610)
                      |-.+++++|.++|++.++|.+....+|.+|++++ +++++.+++|+++|++++++++++.++|.+|..+.+++.++++||
T Consensus         4 ~~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L   83 (270)
T 3m66_A            4 DHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHH
Confidence            3457899999999999999877777778899998 689999999999999999999999999999999988899999999


Q ss_pred             HHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH-HcCCCCCcHHHHHhhCCccccccccccchhHHHHH-HHhCCC
Q 007270          436 EDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI-GIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYL-MEMGLS  513 (610)
Q Consensus       436 ~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~-~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L-~~lG~s  513 (610)
                      +++|++++++.+++.++|+++..+++ +++++++||+ ++|++.+++.+++.++|.+++++.+ .++++++++ .++||+
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s  161 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFK  161 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCC
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCC
Confidence            99999999999999999999999988 6999999995 7999999999999999999999975 799999986 589999


Q ss_pred             HHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhhcCccccccccchHHhHHHHHHhcC---C------CCC
Q 007270          514 KRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRN---I------ECS  584 (610)
Q Consensus       514 ~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~~P~~L~ySlekRI~pR~~vL~~~G---l------~~s  584 (610)
                      .+++..|+.++|++|++|.+ +|++|++||+++||++.++|+++|++|+||+| ||+|||.+|+.+|   +      .++
T Consensus       162 ~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~  239 (270)
T 3m66_A          162 HNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS  239 (270)
T ss_dssp             HHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC
T ss_pred             HHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC
Confidence            99999999999999999998 59999999999999999999999999999999 9999999998754   3      268


Q ss_pred             hHHhhcCChHHHHhhccccCCCC
Q 007270          585 LEEMLGKNDDEFATEFLLAPSAH  607 (610)
Q Consensus       585 l~~vL~~sdk~F~~~yV~~y~~~  607 (610)
                      |.+++.+||++|+++|+..+.|+
T Consensus       240 L~~~l~~sd~~F~~~~~~~~~ee  262 (270)
T 3m66_A          240 LDKLVSIPDEIFCEEIAKASVQD  262 (270)
T ss_dssp             HHHHHHSCHHHHHHHTTCSCHHH
T ss_pred             HHHHhcCCHHHHHHHHhcCCHHH
Confidence            99999999999999999999875

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=6.3e-37  Score=324.35  Aligned_cols=309  Identities=17%  Similarity=0.228  Sum_probs=228.5

Q ss_pred             CccchhhhccCCCcchhhhhhhhcCCCCChhhhhhhhhhhhhhccCCCccccccchhhhhhhcCCCCCChhhhhhhhhhh
Q 007270          170 NGKVAFLESLGLSLSSAISIARSLSGEPLPPLIHKVKYMKEIFFSGSNTERTLGKNGRRMMKHLSIPIDEDVQQTLAFFE  249 (610)
Q Consensus       170 n~~~~f~EslG~~~s~~~~~a~~~~~~~L~~l~~kv~fl~~~~~~~~d~~~~l~~~~~~~l~~~~~~~~~da~~vl~fl~  249 (610)
                      ++++.||+++|+++..+....        |    ++                          ++.++.++|+  ++.||.
T Consensus        20 ~~~v~~L~s~Gl~~~~~~~~~--------p----~l--------------------------~~~s~~~~~~--vl~fL~   59 (343)
T 3mva_O           20 EDLLKNLLTMGVDIDMARKRQ--------P----GV--------------------------FHRMITNEQD--LKMFLL   59 (343)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHC--------G----GG--------------------------GGCSCCCHHH--HHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHhC--------c----hh--------------------------hccCcccHHH--HHHHHH
Confidence            457889999999988665411        1    11                          2234555665  489999


Q ss_pred             hhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCce-ecCH-HHHHHHHH
Q 007270          250 KIEARRGGLDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLI-FWNI-KAIRTKAL  327 (610)
Q Consensus       250 sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL-~~s~-~~L~~~l~  327 (610)
                      +          +|+++++|++++.++|++|.++++ ++.|+++||+++|++.++|++++.++|++| ..+. +.+.++++
T Consensus        60 ~----------~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~  128 (343)
T 3mva_O           60 S----------KGASKEVIASIISRYPRAITRTPE-NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIK  128 (343)
T ss_dssp             H----------TTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHH
T ss_pred             H----------cCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHH
Confidence            7          699999999999999999999965 699999999999999999999999999954 4444 48999999


Q ss_pred             HHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCC------hHHHHHHHHhCCccccCChhHHHHHHHHHH
Q 007270          328 AFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVP------KLSVDRAIRSWPHLLGCSTSKLKLMLDQLG  401 (610)
Q Consensus       328 ~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~------~~~I~~il~~~P~lL~~s~~~l~~~l~~L~  401 (610)
                      ||+++|++.+++.+++.++|++++.+++.+ ++++++|+++|++      .++|.+++.++|++++++.+++++.+++++
T Consensus       129 fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~  207 (343)
T 3mva_O          129 FLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLR  207 (343)
T ss_dssp             HHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999876 9999999987764      556677777777666666555555555555


Q ss_pred             HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHHhcc-CcccccchhhHHHhHHHHHH----HcCC
Q 007270          402 ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRC-PELFASNIERTLMKKIDFLI----GIGI  476 (610)
Q Consensus       402 elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll~k~-P~iL~~s~e~~L~~k~~fL~----~lGl  476 (610)
                      +                                  .+|++++++..++.+. |.++..+.+ .+++++.|+.    ++|+
T Consensus       208 ~----------------------------------~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e~~~~lG~  252 (343)
T 3mva_O          208 S----------------------------------TFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSLGC  252 (343)
T ss_dssp             H----------------------------------HSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHHHHHTTTC
T ss_pred             H----------------------------------HcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHHHHHHcCC
Confidence            2                                  2444444444554443 355555543 6666665555    4677


Q ss_pred             CCCcHHHHHhhCCccccccccccchhHHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhh
Q 007270          477 SKDHLPRTIKKYPELLVSDVDRTLLPRIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVA  556 (610)
Q Consensus       477 s~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~  556 (610)
                      ++++|.+|+.++|.+|++|.+ .+++|++||.++|++.++|    .++|++|+||.| +|++|++||.+ .|+..+.  .
T Consensus       253 s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~~~~~i----~~~P~~l~~sle-ri~~R~~~L~~-~g~~~~~--~  323 (343)
T 3mva_O          253 TEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENISISQI----IENPRVLDSSIS-TLKSRIKELVN-AGCNLST--L  323 (343)
T ss_dssp             CHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTCCHHHH----HHSGGGGGSCHH-HHHHHHHHHHT-TTCCSSS--S
T ss_pred             CHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCCCHHHH----HhCCHHHhcCHH-HHHHHHHHHHH-CCCCCCC--C
Confidence            777777777777777777765 4788888887788887776    678888888888 57888887764 5765442  1


Q ss_pred             cCccccccccchHHhHHHH
Q 007270          557 YPRYFSYSLEKKIKPRFWV  575 (610)
Q Consensus       557 ~P~~L~ySlekRI~pR~~v  575 (610)
                      +-.+|++| |+++..|+..
T Consensus       324 ~~~~l~~s-~~~F~~~~~~  341 (343)
T 3mva_O          324 NITLLSWS-KKRYEAKLKK  341 (343)
T ss_dssp             CGGGGGSC-HHHHHHHHHH
T ss_pred             cchhhcCC-HHHHHHHHhc
Confidence            12556655 4477666653

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=292.74  Aligned_cols=208  Identities=19%  Similarity=0.315  Sum_probs=193.4

Q ss_pred             hHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHH
Q 007270          391 SKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDF  470 (610)
Q Consensus       391 ~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~f  470 (610)
                      .+++..++.|.++||++.+|++++..+|.++   ..++.+++.+|..+|++.++|+++++++|++|..+++ +|+++++|
T Consensus        44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il---~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           44 LELERVMSSLLDMGFSNAHINELLSVRRGAS---LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCC---HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCHHHHHHHHHhCcccc---hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            4688888999999999999999999999976   3568889999999999999999999999999999986 89999999


Q ss_pred             HHHcCCCCCcHHHHHhhCCccccccccccchhHHHHHH-HhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCC
Q 007270          471 LIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEK  549 (610)
Q Consensus       471 L~~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~  549 (610)
                      |+++|++.+++.+++.++|.+|+++.+ .+..++.+|. ++||+.++|..||.++|+||++|.+ .|++|++||+++||+
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e-~L~~K~efLv~~Mgl  197 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGI  197 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTTCC
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHH-HHHHHHHHHHHHhCC
Confidence            999999999999999999999999986 7999999997 6999999999999999999999998 599999999999999


Q ss_pred             ChhHHhhcCccccccccchHHhHHHHHHhcCC-------------CCChHHhhcCChHHHHhhccccCCC
Q 007270          550 SLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNI-------------ECSLEEMLGKNDDEFATEFLLAPSA  606 (610)
Q Consensus       550 ~~~~Iv~~P~~L~ySlekRI~pR~~vL~~~Gl-------------~~sl~~vL~~sdk~F~~~yV~~y~~  606 (610)
                      ++++|++ |.+|+||++ ||+|||.||+.+|.             +++|..++.+||++|++++.....|
T Consensus       198 ~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~e  265 (335)
T 4fp9_B          198 KHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVE  265 (335)
T ss_dssp             CHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHH
T ss_pred             CHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHH
Confidence            9999997 999999999 99999999999886             3579999999999999999876654

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.97  E-value=2.8e-31  Score=271.94  Aligned_cols=215  Identities=13%  Similarity=0.255  Sum_probs=118.7

Q ss_pred             HHHHHHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHc
Q 007270          324 TKALAFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGEL  403 (610)
Q Consensus       324 ~~l~~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~el  403 (610)
                      +.+++|.++|++..++.+....+|.+|..++++++.++++||+++|++.++|++++.++|.+++++.+++++.+++|+++
T Consensus         7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~   86 (270)
T 3m66_A            7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSK   86 (270)
T ss_dssp             HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHc
Confidence            34444444444444443333333333555555555555555555555555555555555555555554455555555555


Q ss_pred             CCChhHHHHHHHhCCcccccCchhHHHHHHHH-HHcCCChhhHHHHHhccCcccccchhhHHHhHHHHH-HHcCCCCCcH
Q 007270          404 GVENKKLGQVIAKSPQLLLRKPQEFRQVVSFL-EDVGFDRENVGRILGRCPELFASNIERTLMKKIDFL-IGIGISKDHL  481 (610)
Q Consensus       404 G~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL-~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL-~~lGls~~~i  481 (610)
                      |++++++++++.++|++|..+.+++.++++|| +++|++.+++..++.++|+++..+.+ +++++++++ .++|++.++|
T Consensus        87 Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ei  165 (270)
T 3m66_A           87 NFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHNEI  165 (270)
T ss_dssp             TCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHHHH
T ss_pred             CCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHHHH
Confidence            55555555555555555555555555555555 35555555555555555555555544 456666654 3566666666


Q ss_pred             HHHHhhCCccccccccccchhHHHHHH-HhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHH
Q 007270          482 PRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLN  545 (610)
Q Consensus       482 ~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~  545 (610)
                      .+++.++|.+|++|. +++++|++||. ++|++.++|    .++|++|+||.| +|++|+.|+..
T Consensus       166 ~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~  224 (270)
T 3m66_A          166 QHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTY  224 (270)
T ss_dssp             HHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHH
T ss_pred             HHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHH
Confidence            666666666666664 36666666664 466666655    566666666666 46666666653

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.91  E-value=8.3e-24  Score=221.59  Aligned_cols=181  Identities=20%  Similarity=0.370  Sum_probs=145.4

Q ss_pred             hHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCChhHHHHHHHhCCcccccCchhHHHHHHHHH
Q 007270          357 NYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLE  436 (610)
Q Consensus       357 ~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~  436 (610)
                      .+.+++..|+++|++.++|++++..+|.++.   .++.+++.+|..+|++++.+++||.++|.+|..+.+++.++++||+
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~---~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~  121 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL---QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ  121 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH---HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch---hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHH
Confidence            4677778888888888888888888887753   4677778888888888888888888888888888888888888888


Q ss_pred             HcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH-HcCCCCCcHHHHHhhCCccccccccccchhHHHHHH-HhCCCH
Q 007270          437 DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI-GIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLM-EMGLSK  514 (610)
Q Consensus       437 ~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~-~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~-~lG~s~  514 (610)
                      ++|++.+++.+++.++|++++.+.+ +++.++.+|. ++|++.++|.+|+.++|.+|++|. +.|++|++||. +||++.
T Consensus       122 ~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl~~  199 (335)
T 4fp9_B          122 KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKH  199 (335)
T ss_dssp             HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCCCH
T ss_pred             HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCCCH
Confidence            8888888888888888888888866 6888888876 588888888888888888888885 47888888887 588888


Q ss_pred             HHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCC
Q 007270          515 RDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEK  549 (610)
Q Consensus       515 ~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~  549 (610)
                      ++|    .+ |++|+||.+ .|++|..||+. +|.
T Consensus       200 ~eI----vk-P~~l~ySLe-RIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          200 PDI----VK-SEYLQYSLT-KIKQRHIYLER-LGR  227 (335)
T ss_dssp             HHH----HH-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred             HHc----cc-cchhhccHH-HHHHHHHHHHH-cCC
Confidence            877    33 888888888 48888888875 454

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.16  E-value=1.2e-09  Score=98.34  Aligned_cols=167  Identities=21%  Similarity=0.346  Sum_probs=146.5

Q ss_pred             HHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcCCCCCcHHHHHhhCCccccccccccchhHHHHHHH
Q 007270          430 QVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLME  509 (610)
Q Consensus       430 ~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~~  509 (610)
                      ..+.-+--+|+.++-++-++++.|+++...+- .++.+-.+|..+|+.+..+.+++-.+|.++...- +.+.+.+..|++
T Consensus        35 diisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrllke  112 (239)
T 4fzv_B           35 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKE  112 (239)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHHHHH
Confidence            34455556899999999999999999988865 7899999999999999999999999999998874 578889999985


Q ss_pred             -hCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcCCChhHHhhcCccccccccchHHhHHHHHHhcCC-------
Q 007270          510 -MGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTMEKSLQDVVAYPRYFSYSLEKKIKPRFWVLKGRNI-------  581 (610)
Q Consensus       510 -lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG~~~~~Iv~~P~~L~ySlekRI~pR~~vL~~~Gl-------  581 (610)
                       +-|+..++.+++..+|.+|.-+... ++-|+.|-.-.||...-+|++. .||.||+. +|+.|+-+|+.+|-       
T Consensus       113 kclftvqqvtkilhscpsvlredlgq-leykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkk  189 (239)
T 4fzv_B          113 KCLFTVQQVTKILHSCPSVLREDLGQ-LEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKK  189 (239)
T ss_dssp             HSCCCHHHHHHHHHHCGGGGTSCTTH-HHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSS
T ss_pred             hHHhhHHHHHHHHHhCcHHHHHHHhh-hhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCcc
Confidence             8899999999999999999998885 8999998877899999999986 69999998 99999999998763       


Q ss_pred             ------CCChHHhhcCChHHHHhhcc
Q 007270          582 ------ECSLEEMLGKNDDEFATEFL  601 (610)
Q Consensus       582 ------~~sl~~vL~~sdk~F~~~yV  601 (610)
                            ++-+.+++..||.+|+++-.
T Consensus       190 gqtqipnpllkdilrvseaeflarta  215 (239)
T 4fzv_B          190 GQTQIPNPLLKDILRVSEAEFLARTA  215 (239)
T ss_dssp             SCCSSCCCCHHHHHTSCHHHHHHHTS
T ss_pred             CCccCCChHHHHHHHHhHHHHHHHHh
Confidence                  35789999999999998753

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.20  E-value=1.1e-05  Score=72.71  Aligned_cols=141  Identities=13%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             HHHHhCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHH-cCCC
Q 007270          328 AFEEIGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGE-LGVE  406 (610)
Q Consensus       328 ~L~~lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~e-lG~~  406 (610)
                      -|.-+|+.++-++-++.+.|.+|...+. .+...-.+|+.+|+....+.+++-.||.++++....+...++.+.+ .-|+
T Consensus        39 efillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllkekclft  117 (239)
T 4fzv_B           39 EFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFT  117 (239)
T ss_dssp             HHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHHhHHhh
Confidence            3444566666666666666666655543 2555556666666666666666666666666655555555555554 4455


Q ss_pred             hhHHHHHHHhCCcccccCchhHHHHHHHHH-HcCCChhhHHHHHhccCcccccchhhHHHhHHHHHHHcC
Q 007270          407 NKKLGQVIAKSPQLLLRKPQEFRQVVSFLE-DVGFDRENVGRILGRCPELFASNIERTLMKKIDFLIGIG  475 (610)
Q Consensus       407 ~~~l~~il~~~P~lL~~s~~~i~~kv~fL~-~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~lG  475 (610)
                      -.++.+|+..||.++..+.+.++-++.|-- ++|+...+|.+-     .-+..+.. +++.+.-+|.++|
T Consensus       118 vqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-----eylqyslt-kikqrhiylerlg  181 (239)
T 4fzv_B          118 VQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-----EYLQYSLT-KIKQRHIYLERLG  181 (239)
T ss_dssp             HHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-----TGGGSCHH-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-----HHHHHHHH-HHHHHHhHHHHhc
Confidence            555555555555555555555555554432 455554444321     12333432 4555555555444

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=91.62  E-value=2.4  Score=47.43  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=9.7

Q ss_pred             HcCCChhhHHHHHhc
Q 007270          437 DVGFDRENVGRILGR  451 (610)
Q Consensus       437 ~lG~s~~~i~~ll~k  451 (610)
                      ..||+.++|..|-..
T Consensus       489 ~~gls~~qvvaiA~n  503 (1047)
T 3ugm_A          489 AHGLTPDQVVAIASN  503 (1047)
T ss_dssp             HSCCCSHHHHHHHSS
T ss_pred             hcCCCHHHHHHHHhc
Confidence            367777777666543

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=90.23  E-value=1.9  Score=37.77  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=21.9

Q ss_pred             HHHHHHHhCCCHHHHHHHHHhcCcccccChhhhHHHHHHHHHHHcC
Q 007270          503 RIKYLMEMGLSKRDIAFMVRRFSPLLGYSIDEVFRPKLAFLLNTME  548 (610)
Q Consensus       503 kv~~L~~lG~s~~ev~~mi~r~P~iL~~s~e~~Lk~ki~fL~~~mG  548 (610)
                      .+.-|.+|||+.+.+.++++.+-.        .+..-++||....|
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~~n--------d~erAlewL~~~~~  116 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLHNN--------DQDNALEDLMARAG  116 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTT--------CHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCC--------CHHHHHHHHHHhcc
Confidence            455566677777766666666652        24455666655443

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=90.21  E-value=4.4  Score=45.40  Aligned_cols=107  Identities=12%  Similarity=0.147  Sum_probs=51.0

Q ss_pred             CCCChHHHHHHHHhCCccccCC-hhHHHHHHHHHH-HcCCChhHHHHHHHhCCcccccCchhHHHHHHHHH-HcCCChhh
Q 007270          368 EKVPKLSVDRAIRSWPHLLGCS-TSKLKLMLDQLG-ELGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLE-DVGFDREN  444 (610)
Q Consensus       368 ~Gl~~~~I~~il~~~P~lL~~s-~~~l~~~l~~L~-elG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~-~lG~s~~~  444 (610)
                      .|++.++|.++-.. .   +.. .+.+...+..+. +.||++.++..|-..+-.-  .-.+.+...+-.|+ ..|++.++
T Consensus       389 ~gls~~~vvaiA~~-G---G~qALe~V~~L~p~l~~~~glt~~qvv~IAsn~GGk--QALe~V~~llp~L~~~~glt~aq  462 (1047)
T 3ugm_A          389 HGLTPDQVVAIASN-G---GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK--QALETVQRLLPVLCQTHGLTPAQ  462 (1047)
T ss_dssp             SCCCHHHHHHHHHH-T---HHHHHHHHHHHHHHHHTTSSCCHHHHHHHHSSTTTH--HHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             cCCCHHHHHHHhcc-c---chhHHHHHhhccchhhhhcCCCHHHhhhhhccCchH--HHHHHHHHHhHHhhcccCCCHHH
Confidence            56666666655432 0   000 133333333333 4777777776665433210  00122333334444 57888888


Q ss_pred             HHHHHhccCcccccchhhHHHhH---HHHHHH-cCCCCCcHHHHHh
Q 007270          445 VGRILGRCPELFASNIERTLMKK---IDFLIG-IGISKDHLPRTIK  486 (610)
Q Consensus       445 i~~ll~k~P~iL~~s~e~~L~~k---~~fL~~-lGls~~~i~~~I~  486 (610)
                      |..|-...    +.  ..-|+..   ...|.. .|++.++|.+|..
T Consensus       463 vVaIAsn~----GG--kQALeaV~~llpvl~~~~gls~~qvvaiA~  502 (1047)
T 3ugm_A          463 VVAIASHD----GG--KQALETVQQLLPVLCQAHGLTPDQVVAIAS  502 (1047)
T ss_dssp             HHHHSSST----TH--HHHHHHHHHHHHHHHHHSCCCSHHHHHHHS
T ss_pred             HHHHHhcC----cH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHh
Confidence            87664331    11  1122222   222333 7888888877653

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=90.18  E-value=2.5  Score=36.89  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             HHHHHHHHcCCChhhHHHHHhccCcccccchhhHHHhHHHHHH
Q 007270          430 QVVSFLEDVGFDRENVGRILGRCPELFASNIERTLMKKIDFLI  472 (610)
Q Consensus       430 ~kv~fL~~lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~  472 (610)
                      ..+.-|.++||+.+++.++++.+        ..++.+-+++|.
T Consensus        78 ~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~  112 (118)
T 4ae4_A           78 QLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM  112 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence            45666667777777777666542        224555566665

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=88.01  E-value=9.7  Score=39.49  Aligned_cols=361  Identities=10%  Similarity=0.065  Sum_probs=186.2

Q ss_pred             CcchhhchHHHHHHHHhhcCCCccchh---hhccCCCcchhhhhhhhcCCCC-------ChhhhhhhhhhhhhhccCCCc
Q 007270          149 EESVLIGFKEKVVRMAKEKGDNGKVAF---LESLGLSLSSAISIARSLSGEP-------LPPLIHKVKYMKEIFFSGSNT  218 (610)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~p~n~~~~f---~EslG~~~s~~~~~a~~~~~~~-------L~~l~~kv~fl~~~~~~~~d~  218 (610)
                      .++.++++++.=.+.++.+-.+++.-|   +--.|+|+..+..|+.|  +..       +|.|+--+.-+      ..++
T Consensus         6 ~~l~~lgys~~q~~k~k~~~~s~va~~h~~l~~~g~t~~~i~~is~~--~~al~~va~~y~~l~aal~~l------t~~~   77 (463)
T 4hpz_A            6 VDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQH--PAALGTVAVKYQDMIAALPEA------THEA   77 (463)
T ss_dssp             -CGGGGTCCHHHHHHHCGGGHHHHHHHHHHHHHTTCCHHHHHHHTTS--THHHHHHHTTHHHHHHHSTTC------CHHH
T ss_pred             hhHHHhccCHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHhhcc--HhHHHHHHHhhHHHHhhcccc------CHHH
Confidence            457777888776666666666666655   33469999999987764  111       22222111111      0001


Q ss_pred             cccccchhhhhhhcCCCCCChhhhhhhhhhhhhHhhhCCcccCCCCHHHHHHHHHhCCCeeecCc-cCCHHHHHHHHHh-
Q 007270          219 ERTLGKNGRRMMKHLSIPIDEDVQQTLAFFEKIEARRGGLDMLGSSDASFRYLVESFPRLLLLSA-ESHVKPVVDFLEI-  296 (610)
Q Consensus       219 ~~~l~~~~~~~l~~~~~~~~~da~~vl~fl~sL~~kl~gl~~lGls~s~I~~iv~~~P~LL~~~~-~~~l~p~l~~L~s-  296 (610)
                      -..++       ++.++.-  ....++....-|...     -+|++.++|.+|...=     ... =..+......|+. 
T Consensus        78 iV~ia-------~~~~g~~--Al~a~~~~~~~L~~~-----p~~l~~~qiv~IA~~G-----g~~Aleav~~~~~~L~~a  138 (463)
T 4hpz_A           78 IVGVG-------KQWSGAC--ALEALLTVAGELRGP-----PLQLDTGQLLKIAKRG-----GVTAVEVHHTWRNALTGA  138 (463)
T ss_dssp             HHHHH-------TSTTTTH--HHHHHHHHHHHHHST-----TTCCCHHHHHHHHHHH-----HHHHHHHHHHTHHHHHST
T ss_pred             HHHHH-------hccchHH--HHHHHHHHHHHhhcC-----ccCCCHHHHHHHHhhC-----cHHHHHHHHHHHHHHhCC
Confidence            01111       1111110  011123333322211     3699999999988631     100 0112333345554 


Q ss_pred             -cCCChHHHHHHHhhCCCceecCHHHHHHHHHHHHH-hCCChHHHHHHHHhCCcccccChhhhHHHHHHHHHh-CCCChH
Q 007270          297 -VGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEE-IGAVDNDVGKMLLKYPWILSTSIQENYEEILSVFNE-EKVPKL  373 (610)
Q Consensus       297 -lGis~~~I~~il~~~P~IL~~s~~~L~~~l~~L~~-lG~s~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~-~Gl~~~  373 (610)
                       +|+++.|+..|-+....-  .-.+.+...+..|+. .|++.++|+++-...-.   ..--+.+......|.. .|++.+
T Consensus       139 pl~Lsp~qvVaIAsn~GGk--qALeaV~~llpvL~~a~~Ls~~qVVaIAsn~GG---kQALeaV~~llpvl~~~~~Ls~a  213 (463)
T 4hpz_A          139 PLNLTPDQVVAIASNIGGK--QALETVQRLLPVLCQDHGLTPQQVVAIASNGGG---KQALETVQRLLPVLCQAHGLTPD  213 (463)
T ss_dssp             TTCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             CcCCCHHHHHHHHhcCccH--HHHHHHHHHHHHHhhhcCCCHHHHHHHhhcCch---HHHHHHHHHHHHHhhccccCCHH
Confidence             799999998887654210  001445555555664 79999999887543221   1111234455556654 899999


Q ss_pred             HHHHHHHhCCccccCC-hhHHHHHHHHHHH-cCCChhHHHHHHHhCCcccccCchhHHHHHHHHHH-cCCChhhHHHHHh
Q 007270          374 SVDRAIRSWPHLLGCS-TSKLKLMLDQLGE-LGVENKKLGQVIAKSPQLLLRKPQEFRQVVSFLED-VGFDRENVGRILG  450 (610)
Q Consensus       374 ~I~~il~~~P~lL~~s-~~~l~~~l~~L~e-lG~~~~~l~~il~~~P~lL~~s~~~i~~kv~fL~~-lG~s~~~i~~ll~  450 (610)
                      +|..|-...-.   .. .+.+....-.|+. .|+++.++..|-...-.-  .-.+.+..-.-.|+. .|++.++|..|-.
T Consensus       214 qVVaIAsn~GG---kQALeaV~~llpvl~~~~gls~aqVVaIAsn~GGk--QALeaV~~llP~L~~~~gls~~qVVaIAs  288 (463)
T 4hpz_A          214 QVVAIASHDGG---KQALETVQRLLPVLCQDHGLTPQQVVAIASNIGGK--QALETVQRLLPVLCQDHGLTPDQVVAIAS  288 (463)
T ss_dssp             HHHHHHSSTTH---HHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHT
T ss_pred             HHHHHhhcccc---HHHHHHHHhhhhhhhhhccCCHHHHHHHhcccchH--HHHHHHHhhchhhhhccCCCHHHhhhhhc
Confidence            99887543311   00 1455555555554 899999988875432110  001223333444444 7999999887744


Q ss_pred             ccCcccccchhhHHHhHHHHHHH-cCCCCCcHHHHHhhCCccccccccccchhHHHHHHH-hCCCHHHHHHHHHhcCccc
Q 007270          451 RCPELFASNIERTLMKKIDFLIG-IGISKDHLPRTIKKYPELLVSDVDRTLLPRIKYLME-MGLSKRDIAFMVRRFSPLL  528 (610)
Q Consensus       451 k~P~iL~~s~e~~L~~k~~fL~~-lGls~~~i~~~I~~~P~iL~~sle~~L~~kv~~L~~-lG~s~~ev~~mi~r~P~iL  528 (610)
                      ..-.--   --+.+++-.-.|.+ .|++.++|..|-.....-  +-+ +.++.-.-.|++ .|++.++|..+-...--  
T Consensus       289 N~GGkQ---ALeaV~~l~p~Lr~~~~ls~~qVVaIAsN~GGk--QAL-eaV~~llp~Lr~~~~ls~~qVvaIAsn~GG--  360 (463)
T 4hpz_A          289 NDGGKQ---ALETVQRLLPVLCQDHGLTPEQVVAIASNGGGK--QAL-ETVQRLLPVLCQAHGLTPDQVVAIASHDGG--  360 (463)
T ss_dssp             STTHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHHHSCCCHHHHHHHHTSTTH--
T ss_pred             CccHHH---HHHHHHHHhHHHHhhcCCCHHHhhhhhcCcchH--HHH-HHHHHhhhhcchhccCCHHHhHhhhhcCcc--
Confidence            321100   01134444444554 699999887753222110  001 134444556664 79999998666421100  


Q ss_pred             ccChhhhHHHHHHHHHHHcCCChhHHh
Q 007270          529 GYSIDEVFRPKLAFLLNTMEKSLQDVV  555 (610)
Q Consensus       529 ~~s~e~~Lk~ki~fL~~~mG~~~~~Iv  555 (610)
                      .+-.|. ++.-.--|....|++..+|+
T Consensus       361 kQALea-V~~llpvL~~a~gls~aqVV  386 (463)
T 4hpz_A          361 KQALET-VQRLLPVLCQDHGLTPAQAV  386 (463)
T ss_dssp             HHHHHH-HHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHH-HHHHhHHHHHHhCCCHHHhh
Confidence            001222 33344455555788887764

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=83.93  E-value=0.65  Score=48.79  Aligned_cols=42  Identities=19%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHhCCCChHHHHHHHHhCCccccCChhHHHHHHHHHHHcCCC
Q 007270          357 NYEEILSVFNEEKVPKLSVDRAIRSWPHLLGCSTSKLKLMLDQLGELGVE  406 (610)
Q Consensus       357 ~l~~~v~fL~~~Gl~~~~I~~il~~~P~lL~~s~~~l~~~l~~L~elG~~  406 (610)
                      .....|..|.++|++.+++.+.++..-.       +....++||-. |++
T Consensus       167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~n-------n~~~A~e~L~~-gip  208 (368)
T 1oqy_A          167 EYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT-GIP  208 (368)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSCS-------STTHHHHTTTT-SST
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHh-CCC
Confidence            3666788888888888888888876531       45556677632 444

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=82.13  E-value=1.5  Score=32.83  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             chhHHHHHHHhCCCHHHHHHHHHh
Q 007270          500 LLPRIKYLMEMGLSKRDIAFMVRR  523 (610)
Q Consensus       500 L~~kv~~L~~lG~s~~ev~~mi~r  523 (610)
                      +..|+.||++.|++.+||..+++|
T Consensus        30 ~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           30 LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            556899999999999999888876

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=80.44  E-value=14  Score=38.29  Aligned_cols=237  Identities=13%  Similarity=0.134  Sum_probs=144.4

Q ss_pred             cccCCCCHHHHHHHHHhCCCeeecCccCCHHHHHHHHHhcCCChHHHHHHHhhCCCceecCHHHHHHHHHHHHH-h-CCC
Q 007270          258 LDMLGSSDASFRYLVESFPRLLLLSAESHVKPVVDFLEIVGVPKDCMGNVLLLFPPLIFWNIKAIRTKALAFEE-I-GAV  335 (610)
Q Consensus       258 l~~lGls~s~I~~iv~~~P~LL~~~~~~~l~p~l~~L~slGis~~~I~~il~~~P~IL~~s~~~L~~~l~~L~~-l-G~s  335 (610)
                      |.-||.|+.++.++-   |..     -.++...-+.|..-|++..+|..|-.. |.    +.+.+..++..|.. + +++
T Consensus         8 l~~lgys~~q~~k~k---~~~-----~s~va~~h~~l~~~g~t~~~i~~is~~-~~----al~~va~~y~~l~aal~~lt   74 (463)
T 4hpz_A            8 LRTLGYSQQQQEKIK---PKV-----RSTVAQHHEALVGHGFTHAHIVALSQH-PA----ALGTVAVKYQDMIAALPEAT   74 (463)
T ss_dssp             GGGGTCCHHHHHHHC---GGG-----HHHHHHHHHHHHHTTCCHHHHHHHTTS-TH----HHHHHHTTHHHHHHHSTTCC
T ss_pred             HHHhccCHHHHHHhh---HHH-----HHHHHHHHHHHHhcCCCHHHHHHhhcc-Hh----HHHHHHHhhHHHHhhccccC
Confidence            445699999999874   222     234566667789999999999877643 43    23455555555553 3 899


Q ss_pred             hHHHHHHHHhCCcccccChhhhHHHHHHHHHh--CCCChHHHHHHHHhCCccccCC-hhHHHHHHHHHHH--cCCChhHH
Q 007270          336 DNDVGKMLLKYPWILSTSIQENYEEILSVFNE--EKVPKLSVDRAIRSWPHLLGCS-TSKLKLMLDQLGE--LGVENKKL  410 (610)
Q Consensus       336 ~~~v~kll~~~P~lL~~s~~~~l~~~v~fL~~--~Gl~~~~I~~il~~~P~lL~~s-~~~l~~~l~~L~e--lG~~~~~l  410 (610)
                      .++|+.+-..+......   +.+.++..-|+.  +|++..+|..|.. +.   +.. .+.+......|..  ++++++++
T Consensus        75 ~~~iV~ia~~~~g~~Al---~a~~~~~~~L~~~p~~l~~~qiv~IA~-~G---g~~Aleav~~~~~~L~~apl~Lsp~qv  147 (463)
T 4hpz_A           75 HEAIVGVGKQWSGACAL---EALLTVAGELRGPPLQLDTGQLLKIAK-RG---GVTAVEVHHTWRNALTGAPLNLTPDQV  147 (463)
T ss_dssp             HHHHHHHHTSTTTTHHH---HHHHHHHHHHHSTTTCCCHHHHHHHHH-HH---HHHHHHHHHHTHHHHHSTTTCCCHHHH
T ss_pred             HHHHHHHHhccchHHHH---HHHHHHHHHhhcCccCCCHHHHHHHHh-hC---cHHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence            99999987766543321   235556666664  5999999999877 21   111 1444444555554  89999999


Q ss_pred             HHHHHhCCcccccCchhHHHHHHHHHH-cCCChhhHHHHHhccCcccccchhhHHHhHHHHHHH-cCCCCCcHHHHHhhC
Q 007270          411 GQVIAKSPQLLLRKPQEFRQVVSFLED-VGFDRENVGRILGRCPELFASNIERTLMKKIDFLIG-IGISKDHLPRTIKKY  488 (610)
Q Consensus       411 ~~il~~~P~lL~~s~~~i~~kv~fL~~-lG~s~~~i~~ll~k~P~iL~~s~e~~L~~k~~fL~~-lGls~~~i~~~I~~~  488 (610)
                      ..|-...-.-  .-.+.+......|+. .|+++++|..+-...-.--.  .+ .++.....|.. .|++.++|.++-...
T Consensus       148 VaIAsn~GGk--qALeaV~~llpvL~~a~~Ls~~qVVaIAsn~GGkQA--Le-aV~~llpvl~~~~~Ls~aqVVaIAsn~  222 (463)
T 4hpz_A          148 VAIASNIGGK--QALETVQRLLPVLCQDHGLTPQQVVAIASNGGGKQA--LE-TVQRLLPVLCQAHGLTPDQVVAIASHD  222 (463)
T ss_dssp             HHHHSSTTHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHTSTTHHHH--HH-HHHHHHHHHHHHHCCCHHHHHHHHSST
T ss_pred             HHHHhcCccH--HHHHHHHHHHHHHhhhcCCCHHHHHHHhhcCchHHH--HH-HHHHHHHHhhccccCCHHHHHHHhhcc
Confidence            8876543220  001234445555554 89999999877543210000  12 44455555654 799999987754222


Q ss_pred             CccccccccccchhHHHHHH-HhCCCHHHHHHHHH
Q 007270          489 PELLVSDVDRTLLPRIKYLM-EMGLSKRDIAFMVR  522 (610)
Q Consensus       489 P~iL~~sle~~L~~kv~~L~-~lG~s~~ev~~mi~  522 (610)
                      ..  -+-+ +.++.-...|. ..||+.++|..+-.
T Consensus       223 GG--kQAL-eaV~~llpvl~~~~gls~aqVVaIAs  254 (463)
T 4hpz_A          223 GG--KQAL-ETVQRLLPVLCQDHGLTPQQVVAIAS  254 (463)
T ss_dssp             TH--HHHH-HHHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred             cc--HHHH-HHHHhhhhhhhhhccCCHHHHHHHhc
Confidence            11  0012 23444455555 37999999977653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00