Citrus Sinensis ID: 007277

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
Protein Sequence
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEVWVCYIFIVVFNNY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHEEEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHEEEEEEEEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccHHHHccccccccccccccccccccccccccccHccccccccccccccccccHHHcccccccHHHHHHHccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
MGSSKREIELEEQLKDAgnlllnppspvdEVINLLDKVEHLLANveqapsrsmrDALLptmkglitndllrrsdMDVRLSVTSCISEitritapdspyddELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRkenqdvsptswklGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACIcgsddenpqhghligsenqlatkepdppclgevvhdvdgisksvtsngtaasrnedsVVKDKLSNVLERCSQVErsqsidakcsagpdtsdslrnvksetepesaprkrgrkpnslmnpeegydhswissgrkiakvpgrrksddkgvdcspslnqdskKEALNLTdkmladptsaslksglpdgshhrrgrtkkqgstvnqnadhnslSVSLSTRVeetasgsadfslrkkpedrsdteikhrkrsktneeisqppgygvsekeavvpsadkekplqlsvtKKRRRSLVVAISAqniseasggkkkktskgavkspnidenysedtpkteikrkhtsgkeeVWVCYIFIVVFNNY
Flexible Loop (DISEMBL)
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLAnveqapsrsmrdalLPTMKGlitndllrrsdMDVRLSVtsciseitritapdspYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASvrkenqdvsptswklgeKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKsvtsngtaasrnedsvvkDKLSNVLERCsqversqsidakcsagpdtsdslrnvksetepesaprkrgrkpnslmnpeegydhswissGRKIAKvpgrrksddkgvdcspslnqdskKEALNLTDKMLADPTSaslksglpdgshhrrgrtkkqgstvnqnadhnslsvslstRVEEtasgsadfslrkkpedrsdteikhrkrsktneeisqppgygvsekeavvpsadkekplqlsvtkkrrrSLVVAisaqniseasggkkkktskgavkspnidenysedtpkteikrkhtsgkeevwvCYIFIVVFNNY
Low Complexity Region (SEG)
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEAsggkkkktskgavksPNIDENYSEDTPKTEIKRKHTSGKEEVWVCYIFIVVFNNY
Disordered region (IsUnstruct)
***************************VDEVINLLDKVEHLLANV**********ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGS**************************************************************************************************************************************************************************************************************************************************************************************************************************************************EVWVCYIFIVVFN**
Disordered Region (DISOPRED)
*****************************EVINLLDKVEHLLAN************LLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK***********LGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDD*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************FIVVFNNY
Disordered Region (DISEMBL)
**********EEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSV*************VVKDKLSNVLERC*******************************************NSLMNPEEGYDHSWISSGR********************SLNQDSKKEALNLTDKMLADPTS****************************ADHNSLS*************************************************************DKEKPLQLSVTKKRRRSLVVAISAQNI******************PNIDENYSEDTPKTEIKRKHTSGKEEVWVCYIFIVVFNNY
Disordered Region (DISPRO)
******EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQH*****************************************************************************************************************************************************************************************************************************************************************************************************************************************KEEVWVCYIFIVVFNNY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSKREIELEEQLKDAGNLLLNPPSPxxxxxxxxxxxxxxxxxxxxxPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEVWVCYIFIVVFNNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	609	2.2.26 [Sep-21-2011]
Q9HFF5	1205	Sister chromatid cohesion	yes	no	0.244	0.123	0.286	4e-13
Q04264	1277	Sister chromatid cohesion	yes	no	0.243	0.115	0.286	8e-13
Q5F3V3	1330	Sister chromatid cohesion	yes	no	0.316	0.145	0.263	8e-13
A4L9P7	1333	Sister chromatid cohesion	yes	no	0.316	0.144	0.269	1e-12
Q29RF7	1337	Sister chromatid cohesion	yes	no	0.316	0.144	0.269	1e-12
Q6A026	1332	Sister chromatid cohesion	yes	no	0.316	0.144	0.269	1e-12
A1L1F4	1320	Sister chromatid cohesion	yes	no	0.330	0.152	0.245	2e-12
Q4KLU7	1323	Sister chromatid cohesion	N/A	no	0.321	0.148	0.246	4e-12
Q5U241	1464	Sister chromatid cohesion	N/A	no	0.266	0.110	0.243	4e-12
Q4QXM3	1323	Sister chromatid cohesion	N/A	no	0.321	0.148	0.246	8e-12

>sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 54  RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA 113
           RD++LP  + L+ N+LL   D  +R     CI E+ R+ APD+P+    +++ FQ+ +  
Sbjct: 44  RDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKI 103

Query: 114 FENLSHASGRYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFV 172
              L +    YY +   IL++++ V+S +L++DL   ++ +V +F+ F  + R      V
Sbjct: 104 LSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFFDLARKGTTKNV 163

Query: 173 FAAMETIMTLVIDESEDVSWDLLRILLASV 202
              M  I+  +I+E   +    L IL A +
Sbjct: 164 EFYMLDIINQLINEINTIPAAALNILFAQL 193

Required for the establishment and maintenance of sister chromatid cohesion during S phase. Prevents their formation until eso1 is present. May also have a role during meiosis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q04264|PDS5_YEAST Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 2/150 (1%)

Query: 63  GLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASG 122
            L++  LL+  D+ +R     C+S+I R+ APD+PY D  + + F+L +S FE L     
Sbjct: 58  ALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQEN 117

Query: 123 RYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
            Y+++   ++  + + RS +L+ DL   + L++E+F  F    +S  P  +F  +  I+ 
Sbjct: 118 GYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYDPNKS-FPARLFNVIGGILG 176

Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSP 211
            VI E + V  ++LR++       N +  P
Sbjct: 177 EVISEFDSVPLEVLRLIFNKFLTYNPNEIP 206

Essential for the establishment and maintenance of sister chromatid cohesion at centromere proximal and distal regions during S phase. Also required for chromosomal condensation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2

 Score = 75.9 bits (185), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DEV+  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 33  DEVVKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 91

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 92  FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 151

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 152 EDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 211

Query: 207 QDVSPTSWKLGEKVFTK 223
           ++++  ++ L  KV  K
Sbjct: 212 KNLNKQAFDLA-KVLLK 227

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Gallus gallus (taxid: 9031)

>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 38  DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 96

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 97  FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 156

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 157 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 216

Query: 207 QDVSPTSWKLGEKVFTK 223
           ++++  S+ L  KV  K
Sbjct: 217 KNLNKQSFDLA-KVLLK 232

Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.

Rattus norvegicus (taxid: 10116)

>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 39  DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 97

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 98  FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 157

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 158 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 217

Query: 207 QDVSPTSWKLGEKVFTK 223
           ++++  S+ L  KV  K
Sbjct: 218 KNLNKQSFDLA-KVLLK 233

Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.

Homo sapiens (taxid: 9606)

>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=3 SV=3

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 4/197 (2%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 38  DEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 96

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 97  FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 156

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 157 EDCNEIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 216

Query: 207 QDVSPTSWKLGEKVFTK 223
           ++++  S+ L  KV  K
Sbjct: 217 KNLNKQSFDLA-KVLLK 232

Probable regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair.

Mus musculus (taxid: 10090)

>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 102/204 (50%), Gaps = 3/204 (1%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DEV+  L  V     +++Q  S   +   L     L +   LR  + DVRL V  C+++I
Sbjct: 34  DEVVKRLKLVVKTYMDMDQD-SEEEKQQYLALALHLASEFFLRNPNKDVRLLVACCLADI 92

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +KE F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 93  FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 152

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct: 153 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDTILINLIPAH 212

Query: 207 QDVSPTSWKLGEKVFTKCAAKLKT 230
           ++++  ++ L   +  +    ++T
Sbjct: 213 KNLNKQAYDLARTLLKRTVQTIET 236

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Danio rerio (taxid: 7955)

>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-b PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 101/199 (50%), Gaps = 3/199 (1%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DEV+  L  V     +++Q  S   +   LP    L ++  LR  + DVRL V  C+++I
Sbjct: 31  DEVVKRLKMVVKTFMDMDQD-SEEEKQQYLPLALHLSSDFFLRNPNKDVRLLVACCLADI 89

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +KE F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 90  FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 149

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +  E + V+ + L  +L ++   +
Sbjct: 150 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAH 209

Query: 207 QDVSPTSWKLGEKVFTKCA 225
           ++++  ++ L + +  + A
Sbjct: 210 KNLNKQAFDLAKVLLKRTA 228

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Xenopus laevis (taxid: 8355)

>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 87/164 (53%), Gaps = 2/164 (1%)

Query: 64  LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASG 122
           L ++  L+  D DVRL V  C+++I RI AP++PY   + +K+ F       + L     
Sbjct: 63  LASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKS 122

Query: 123 RYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
             + +   +L+ +A V+S  +  +LE C+++  ++++    VI + H   V   M  +M+
Sbjct: 123 PQFNRYFYLLENIAWVKSYNICFELEDCNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMS 182

Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCA 225
            ++ E + VS +LL  +L ++   +++++  ++ L + +  + A
Sbjct: 183 SIVCEGDTVSQELLDSVLVNLVPAHKNLNKQAYDLAKALLKRTA 226

Plays a role in androgen-induced proliferative arrest. Required for maintenance of sister chromatid cohesion during mitosis.

Xenopus laevis (taxid: 8355)

>sp|Q4QXM3|PD5AA_XENLA Sister chromatid cohesion protein PDS5 homolog A-A OS=Xenopus laevis GN=pds5a-a PE=1 SV=1

 Score = 72.8 bits (177), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 100/199 (50%), Gaps = 3/199 (1%)

Query: 29  DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
           DEV+  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct: 31  DEVVKRLKMVVKTYMDMDQD-SEEEKQQYLPLALHLSSEFFLRNPNKDVRLLVACCLADI 89

Query: 89  TRITAPDSPY-DDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
            RI AP++PY   + +KE F       + L       + +   +L+ +A V+S  +  +L
Sbjct: 90  FRIYAPEAPYTSHDKLKEIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 149

Query: 148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
           E C+++ +++F+    VI ++H   V   M  +M+ +  E + V+ + L  +L ++   +
Sbjct: 150 EDCNEIFIQLFKTLFSVINNSHNQKVQMHMLDLMSSITMEGDGVTQEQLDSILINLISAH 209

Query: 207 QDVSPTSWKLGEKVFTKCA 225
           ++++  ++ L + +  + A
Sbjct: 210 KNLNKQAFDLAKVLLKRTA 228

May regulate sister chromatid cohesion during mitosis and couple it to DNA replication.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	609
255572741	635	conserved hypothetical protein [Ricinus	0.942	0.903	0.486	1e-147
224072711	901	predicted protein [Populus trichocarpa]	0.926	0.625	0.476	1e-132
449436185	820	PREDICTED: uncharacterized protein LOC10	0.623	0.463	0.532	1e-107
224089356	1037	predicted protein [Populus trichocarpa]	0.638	0.375	0.473	2e-95
359476152	858	PREDICTED: uncharacterized protein LOC10	0.924	0.656	0.4	2e-95
296082067	899	unnamed protein product [Vitis vinifera]	0.924	0.626	0.384	1e-92
147766183	1327	hypothetical protein VITISV_002799 [Viti	0.926	0.425	0.383	2e-91
255548760	953	nucleic acid binding protein, putative [	0.940	0.601	0.389	1e-90
297743633	764	unnamed protein product [Vitis vinifera]	0.932	0.743	0.390	4e-90
357467897	835	Sister chromatid cohesion protein PDS5-l	0.604	0.440	0.473	3e-88

>gi|255572741|ref|XP_002527303.1| conserved hypothetical protein [Ricinus communis] gi|223533303|gb|EEF35055.1| conserved hypothetical protein [Ricinus communis]

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 301/619 (48%), Positives = 399/619 (64%), Gaps = 45/619 (7%)

Query: 7   EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT 66
           EIELE+QLK+AGN LLNPPS +DE++N+LDK+EHLL NVEQAPS+SM+DALLP+MK LI+
Sbjct: 5   EIELEQQLKEAGNRLLNPPSSIDELLNMLDKLEHLLINVEQAPSKSMQDALLPSMKALIS 64

Query: 67  NDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM 126
           N LLR SD DV++SV SC+SE TRITAPD PY+D+ MKE F+L V+AFE LSH S R YM
Sbjct: 65  NALLRNSDPDVKVSVVSCLSEFTRITAPDPPYNDDHMKEIFELTVAAFEKLSHVSSRCYM 124

Query: 127 KALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186
           KA+SILDTVA+VRSCL+MLDLE D+L++++FQHFLK+IRSNHPH VF AMETIMTL+I+E
Sbjct: 125 KAVSILDTVARVRSCLIMLDLELDELIIKIFQHFLKIIRSNHPHAVFLAMETIMTLIINE 184

Query: 187 SEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDY 246
           S+ +S  LL  LLASVRKENQ  SP +WKLGEKV    AAKLK  +KEA+   G A D+Y
Sbjct: 185 SDTISMGLLTALLASVRKENQSASPIAWKLGEKVIVNSAAKLKPYIKEALHCDGRAFDEY 244

Query: 247 AEIVACICGSDDENPQHGHLIGSENQLATKE---PDPPCLGEVVHDVDGISKSVTSNGTA 303
           A I+A IC  +     H H+ GS + L TKE   PD    GE++H VDGI +S TSNG A
Sbjct: 245 APIIASICQDESHTVVHDHVNGSRDHLVTKEGRPPDAASPGEILHFVDGIPESTTSNGNA 304

Query: 304 ASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRG 363
           ++R+ ++ + D  +  +E C  ++ S S +A+ +A  +       VK E E  + PRKRG
Sbjct: 305 SARDANNGINDNSTKSMEHCPLIQHSDSTEAQGNADIE-------VKLEMEQGTVPRKRG 357

Query: 364 RKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVD--CSPSLNQDSKKEALNLTDK 421
            KPNSLMNPEEGYDH WI + RK AKV   RK    G+D     ++ +    E + LT +
Sbjct: 358 WKPNSLMNPEEGYDHCWIPTCRKGAKVSRERKLPYMGIDLCLDSTVPKKHVTELVGLTPE 417

Query: 422 M--LADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSV--SLSTRVEETASGS 477
              +   ++ S    LPDG+H ++ R KK  S +NQ+AD +SL V   L+T   E A   
Sbjct: 418 TSGIIGASTPSPNQCLPDGTHRKKSRPKKNPSNMNQDADSSSLEVVKVLNTESREKAKAE 477

Query: 478 ADFSLRKKPEDRSDTEIKHRKRS-------KTNEEISQPPGYGVSEKEAVVPSADKEKPL 530
            + SLRK  E RS+ E+K  K+S       KT +  S P    +S+++  + +  +E+P+
Sbjct: 478 YEVSLRKPSERRSNIEVKLHKQSRKIGIAAKTAKWTSLPSANLLSDEKDDILNEPEERPV 537

Query: 531 QLSV---------------TKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDEN 575
             S                T  R+ SLV+ +S    +E S  KK K+S       + D N
Sbjct: 538 HQSTQIGVRNSQKGRSLVQTDARKISLVIGVSNVRAAEESRIKKSKSS-------DRDGN 590

Query: 576 YSEDTPKTEIKRKHTSGKE 594
           + E+ P  ++KRK T  KE
Sbjct: 591 HKEEIPNKKLKRKRTPRKE 609

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072711|ref|XP_002303844.1| predicted protein [Populus trichocarpa] gi|222841276|gb|EEE78823.1| predicted protein [Populus trichocarpa]

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 313/657 (47%), Positives = 406/657 (61%), Gaps = 93/657 (14%)

Query: 7   EIELEEQLKDAGNLLLNPP---------------------SPVD---EVINLLDKVEHLL 42
           E ELEE+LK+AGN LLNPP                     +PV    E  + + K+E LL
Sbjct: 5   ETELEERLKEAGNSLLNPPSSVDDLLDSLDDGSAANELVVNPVPAGPETTDNIWKLERLL 64

Query: 43  ANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDEL 102
            NVEQAPSRSM+DALLP MK LI++ +LR  D DVR++V SC+SEITRITAPD+PY+D+L
Sbjct: 65  TNVEQAPSRSMQDALLPPMKALISSAILRHLDEDVRVAVASCMSEITRITAPDAPYNDDL 124

Query: 103 MKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLK 162
           MKE FQL V++FE LSH SG  Y KA+SIL+ VA+VRSCL+MLDLE D+L+++MFQ+FLK
Sbjct: 125 MKEIFQLTVASFEKLSHESGHCYTKAVSILENVARVRSCLMMLDLELDELILDMFQYFLK 184

Query: 163 VIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFT 222
            IRSNHP     AMETIMTLVIDESE++S +LL +LL SV+K+NQ  SP +WKLGE+V T
Sbjct: 185 FIRSNHPQIAILAMETIMTLVIDESEEISVELLTLLLVSVKKQNQSFSPIAWKLGERVIT 244

Query: 223 KCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSD------DENPQHGHLIGSENQLATK 276
            CAAK+K  LKEAVQS GI LD+YA IVA I   +      D N   G  +GS       
Sbjct: 245 NCAAKIKPYLKEAVQSTGIPLDEYAPIVASIFQDESHTLECDYNNHSGEPLGS------- 297

Query: 277 EPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKC 336
            P+  C  EV    D I KS+  NGTA+ RN  +V KD  S +LE CS  E S+S +A+ 
Sbjct: 298 SPNAACRKEVFEGKDVIPKSIARNGTASIRNAGTVKKDNASKMLEPCSHTEHSKSTNAQD 357

Query: 337 SAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKS 396
            A P+       V  E EP++ P KRG KPNSLMNPEEGYD  W S+GRK  K+  R K 
Sbjct: 358 KAEPE-------VMLEMEPKAVPSKRGWKPNSLMNPEEGYD-PWFSTGRKTTKL-LREKL 408

Query: 397 DDKGVDCSPSLNQDSKKEALNLTDKMLADPT-----------SASL--KSGLPDGSHHRR 443
            DKG D  PS   DSKK AL+L    +  PT           S+SL  +  +  GSH +R
Sbjct: 409 QDKGNDDLPSETPDSKKVALSLMHVKVTKPTRFTPKTVQISRSSSLTPQQDITAGSHFKR 468

Query: 444 GRTKKQGSTVNQNADHN----SLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKR 499
           GR KK+G++++++AD +    S   S+S +VEE A    D SLRK+ ++RSD+E K +KR
Sbjct: 469 GRPKKKGNSMSEDADPSPSLLSKRESMSAQVEEKAPEFDDASLRKQSKERSDSEAKKQKR 528

Query: 500 -------SKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSV---------------TKK 537
                  SKT ++IS   G  VS K++VV S  +EKP+   V               T  
Sbjct: 529 LRKNELGSKTPKKISLSSGRVVSSKKSVVLSEPEEKPVHQPVVIAVRRFNKHRTAVPTGT 588

Query: 538 RRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKE 594
           +++SL V  S +++ EA   KK       +KS ++D +Y E+TP+ ++KRK T  KE
Sbjct: 589 KKKSLDVN-SDEDVGEAFRDKK-------IKSLDMDGSYLEETPQPKLKRKRTPRKE 637

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436185|ref|XP_004135874.1| PREDICTED: uncharacterized protein LOC101213167 [Cucumis sativus]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/398 (53%), Positives = 279/398 (70%), Gaps = 18/398 (4%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELEEQLK+ G+ LL PPS  D ++  LDK E LL NVEQ+P+RSMRD LLP MK LI++ 
Sbjct: 7   ELEEQLKEIGSELLKPPSSTDALLKGLDKAECLLTNVEQSPTRSMRDTLLPLMKALISDK 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LL+ S+ DV+++ T+CI+EITRITAPD+PYDD+ MK  FQL + AF  LS+ SGR YMKA
Sbjct: 67  LLKHSEEDVKVTATACITEITRITAPDAPYDDDKMKVIFQLTLEAFRKLSNVSGRCYMKA 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
           LSILD VAKVR CL+MLDLECD L++EMFQ FLK+IRSNHP  VF+AME IMT V+DESE
Sbjct: 127 LSILDAVAKVRLCLVMLDLECDNLILEMFQSFLKLIRSNHPTAVFSAMEAIMTNVLDESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           +VS DLLR +LASVRKENQ+ +  SWKL E+V + CA KL+  L +AVQS G +LDDYA 
Sbjct: 187 EVSSDLLRPILASVRKENQEATSISWKLAERVMSNCATKLQPYLMDAVQSLGASLDDYAP 246

Query: 249 IVACICGSDDENPQHG-HLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRN 307
           +V  IC ++ +N   G HL+    Q+ T  PD     E     D  S+S+ S  T A+ N
Sbjct: 247 VVMSICRNETDNIDDGKHLV---TQMHT--PDASI--EENPRTDAASESLISGSTVAAGN 299

Query: 308 EDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPN 367
            D+++K   S   ++CS  E+S+  + K        D++ + K+E   ++ P+KRGRKPN
Sbjct: 300 -DNILKGS-SKKSQKCS--EQSKIAETKI------PDNVESKKAEDTLDTVPKKRGRKPN 349

Query: 368 SLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSP 405
           SLMNP+EGY+H WI  GR+ +++  + KS+D+    SP
Sbjct: 350 SLMNPDEGYEHYWIGKGRERSRLSNQNKSNDQETKFSP 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089356|ref|XP_002308702.1| predicted protein [Populus trichocarpa] gi|222854678|gb|EEE92225.1| predicted protein [Populus trichocarpa]

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/399 (47%), Positives = 267/399 (66%), Gaps = 10/399 (2%)

Query: 1   MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPT 60
           M S+  + ELE+QL +AGN LLNPP  VDE+++LLD+VE+ L+ VEQ+P +SM++AL P+
Sbjct: 1   MASNSSDKELEQQLLEAGNKLLNPPPSVDELLSLLDQVENCLSKVEQSPVKSMQNALSPS 60

Query: 61  MKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHA 120
              L+T+ L R S++DV+++V SCISEITRITAPD+PYDD+ MKE FQL VS+FENL   
Sbjct: 61  QNALVTDQLFRHSNIDVKVAVASCISEITRITAPDAPYDDDRMKEVFQLIVSSFENLDDK 120

Query: 121 SGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIM 180
           S + Y+K  SIL+TVAKVRSC++MLDLECD L++EMFQHF K IR +HP  VF++METIM
Sbjct: 121 SSQSYVKRASILETVAKVRSCVVMLDLECDALIIEMFQHFFKAIRDHHPEDVFSSMETIM 180

Query: 181 TLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRG 240
           +LV++ESED+S +LL +LLASV+K +++V P + +LGE+V   CAAK+K  L + V+S G
Sbjct: 181 SLVLEESEDISVELLSLLLASVKKGDEEVLPVARRLGEEVLESCAAKVKPYLIQTVKSLG 240

Query: 241 IALDDYAEIVACIC----GSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKS 296
           ++LDDY++IV  IC    GS ++N  H       N+  T E   P   E  +  D   KS
Sbjct: 241 VSLDDYSDIVGSICQEISGSVEQNDVHAGDENKVNEEETTEVATPEQAEPAN--DKCPKS 298

Query: 297 VTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLR-NVKSETEP 355
             SNG A    +DS+         E  ++ ++ +SID   +A PD S++ R  V +E+E 
Sbjct: 299 AVSNGVAQMEEDDSLADSDSMKKQEDDNKTDQLKSIDLPSTAEPDFSNAERVVVNTESEA 358

Query: 356 ESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRR 394
           E   +K  + P  L  P E    S + S +K  ++PG +
Sbjct: 359 EQTSKKSEKSPTKLAEPSES---SRVDSEKKAEELPGNK 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476152|ref|XP_002282819.2| PREDICTED: uncharacterized protein LOC100260975 [Vitis vinifera]

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 246/615 (40%), Positives = 342/615 (55%), Gaps = 52/615 (8%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELE+QL +AGN LL PP+ VDE++ LLD+VE+ L  VEQ+PS SM++AL  ++K L+T+ 
Sbjct: 7   ELEKQLMEAGNKLLVPPASVDELLPLLDQVENCLLKVEQSPSMSMQNALSASLKALVTDQ 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LLR SD+DV+++V +CISEITRITAPD+PYDD+ MKE FQL VS+FE LS  S R Y K 
Sbjct: 67  LLRHSDIDVKVAVAACISEITRITAPDAPYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
            SIL+TVAKVRSC++MLDLECD L++EMFQHFL  IR +HP  VF +METIMTLV++ESE
Sbjct: 127 TSILETVAKVRSCVVMLDLECDALIIEMFQHFLNAIRDDHPENVFTSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           D+  +LL  +LAS++K+NQ+V P + KLGEKVF  CA KLK  L +AV+S GI+LDDY++
Sbjct: 187 DIPTELLSPILASIKKDNQEVLPIARKLGEKVFENCANKLKPCLMQAVKSLGISLDDYSK 246

Query: 249 IVACIC-GSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRN 307
           +V+ IC G+     Q+   +  +N  +    +  C GE    +D   KSV SNG   + N
Sbjct: 247 VVSSICQGTSSTADQNDDGVPEQNDDSEISIEAACPGEADPAMDRSPKSVMSNGIKQAAN 306

Query: 308 EDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPN 367
           +DS+V    S   +  +   +S  + ++     D+ D +  V+ E++PE   +KRGRKPN
Sbjct: 307 DDSLVDSNSSKKPDYGTNQSKSSKVPSEVEL--DSLD-VGKVEQESKPEQTTKKRGRKPN 363

Query: 368 SLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDC----SPSLNQDSKKEALNLTDKML 423
           + MN  E  D    S          ++     G D      PS+      E   +T   L
Sbjct: 364 ASMNLIEPSDSRVSSEEESEKLSDHKKNQSKAGHDAPCEDPPSMEAAVPSENEKMTATQL 423

Query: 424 ADP----------TSASLKSGLPDGSHHRR-GRTKKQGSTVNQNADHNSLSVSLSTRVEE 472
           + P           S S    LPD SH R+ GR +K+   +NQ           S+ + E
Sbjct: 424 SSPKALENESSYVASPSPSRSLPDESHVRKVGRPRKK-DNLNQEVGKRRPGKRASSGITE 482

Query: 473 TASGSADFSLR-----KKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKE 527
               SA  +       KK   + DT       S   +E  +  G G    +AV+     E
Sbjct: 483 EDKTSATMTDSVENPLKKSGKKVDTSKNEDGSSLKPQEDRKKRGRG----KAVL-----E 533

Query: 528 KPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKR 587
           K +   ++K   + ++        S  S GK  K           DE++ E+TPK   K 
Sbjct: 534 KEMTKFLSKDDEKEMLS-------SPKSAGKSVK-----------DESHLEETPKMLSKG 575

Query: 588 KHTSGKEEVWVCYIF 602
           KHTSGK +      F
Sbjct: 576 KHTSGKRKASDTVDF 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082067|emb|CBI21072.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 252/656 (38%), Positives = 344/656 (52%), Gaps = 93/656 (14%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELE+QL +AGN LL PP+ VDE++ LLD+VE+ L  VEQ+PS SM++AL  ++K L+T+ 
Sbjct: 7   ELEKQLMEAGNKLLVPPASVDELLPLLDQVENCLLKVEQSPSMSMQNALSASLKALVTDQ 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LLR SD+DV+++V +CISEITRITAPD+PYDD+ MKE FQL VS+FE LS  S R Y K 
Sbjct: 67  LLRHSDIDVKVAVAACISEITRITAPDAPYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
            SIL+TVAKVRSC++MLDLECD L++EMFQHFL  IR +HP  VF +METIMTLV++ESE
Sbjct: 127 TSILETVAKVRSCVVMLDLECDALIIEMFQHFLNAIRDDHPENVFTSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           D+  +LL  +LAS++K+NQ+V P + KLGEKVF  CA KLK  L +AV+S GI+LDDY++
Sbjct: 187 DIPTELLSPILASIKKDNQEVLPIARKLGEKVFENCANKLKPCLMQAVKSLGISLDDYSK 246

Query: 249 IVACIC----------------GSDDENPQH--------------GHLIGSENQLATKEP 278
           +V+ IC                 +DD  PQ               G     E+QL     
Sbjct: 247 VVSSICQGTSSTADQNDDGVPEQNDDSGPQQNDDSAPEQKDDNIAGKNTVEESQLLRASS 306

Query: 279 D------------PPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQV 326
           D              C GE    +D   KSV SNG   + N+DS+V    S   +  +  
Sbjct: 307 DEAAQVDKEISIEAACPGEADPAMDRSPKSVMSNGIKQAANDDSLVDSNSSKKPDYGTNQ 366

Query: 327 ERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRK 386
            +S  + ++     D+ D +  V+ E++PE   +KRGRKPN+ MN  E  D    S    
Sbjct: 367 SKSSKVPSEVEL--DSLD-VGKVEQESKPEQTTKKRGRKPNASMNLIEPSDSRVSSEEES 423

Query: 387 IAKVPGRRKSDDKGVDC----SPSLNQDSKKEALNLTDKMLADP----------TSASLK 432
                 ++     G D      PS+      E   +T   L+ P           S S  
Sbjct: 424 EKLSDHKKNQSKAGHDAPCEDPPSMEAAVPSENEKMTATQLSSPKALENESSYVASPSPS 483

Query: 433 SGLPDGSHHRR-GRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLR-----KKP 486
             LPD SH R+ GR +K+   +NQ           S+ + E    SA  +       KK 
Sbjct: 484 RSLPDESHVRKVGRPRKK-DNLNQEVGKRRPGKRASSGITEEDKTSATMTDSVENPLKKS 542

Query: 487 EDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAI 546
             + DT       S   +E  +  G G    +AV+     EK +   ++K   + ++   
Sbjct: 543 GKKVDTSKNEDGSSLKPQEDRKKRGRG----KAVL-----EKEMTKFLSKDDEKEMLS-- 591

Query: 547 SAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEVWVCYIF 602
                S  S GK  K           DE++ E+TPK   K KHTSGK +      F
Sbjct: 592 -----SPKSAGKSVK-----------DESHLEETPKMLSKGKHTSGKRKASDTVDF 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766183|emb|CAN67967.1| hypothetical protein VITISV_002799 [Vitis vinifera]

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 253/659 (38%), Positives = 348/659 (52%), Gaps = 95/659 (14%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELE+QL +AGN LL PP+ VDE++ LLD+VE+ L  VEQ+PS SM++AL  ++K L+T+ 
Sbjct: 7   ELEKQLMEAGNKLLVPPASVDELLPLLDQVENCLLKVEQSPSMSMQNALSASLKALVTDQ 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LLR SD+DV+++V +CISEITRITAPD+PYDD+ MKE FQL VS+FE LS  S R Y K 
Sbjct: 67  LLRHSDIDVKVAVAACISEITRITAPDAPYDDDQMKEIFQLIVSSFEKLSDRSSRSYDKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
            SIL+TVAKVRSC++MLDLECD L++EMFQHFL  IR +HP  VF +METIMTLV++ESE
Sbjct: 127 TSILETVAKVRSCVVMLDLECDALIIEMFQHFLNAIRDDHPENVFTSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           D+  +LL  +LAS++K+NQ+V P + KLGEKVF  CA KLK  L +AV+S GI+LDDY++
Sbjct: 187 DIPTELLSPILASIKKDNQEVLPIARKLGEKVFENCAXKLKPCLMQAVKSLGISLDDYSK 246

Query: 249 IVACIC----------------GSDDENPQH--------------GHLIGSENQLATKEP 278
           +V+ IC                 +DD  PQ               G     E+QL     
Sbjct: 247 VVSSICQGTSSTADQNDDGVPEQNDDSGPQQNDDSAPEQKDDNIAGKNTVEESQLLRASS 306

Query: 279 D------------PPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQV 326
           D              C GE    +D   KSV SNG   + N+DS+V    S   +  +  
Sbjct: 307 DEAAQVDKEISIEAACPGEADPAMDRSPKSVMSNGIKQAANDDSLVDSNSSKKPDYGTNQ 366

Query: 327 ERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRK 386
            +S  + ++     D+ D +  V+ E++PE   +KRGRKPN+ MN  E  D    S    
Sbjct: 367 SKSSKVPSEVEL--DSLD-VGKVEQESKPEQTTKKRGRKPNASMNLIEPSDSRVSSEEES 423

Query: 387 IAKVPGRRKSDDKGVDC----SPSLNQDSKKEALNLTDKMLADP----------TSASLK 432
                 ++     G D      PS+      E   +T   L+ P           S S  
Sbjct: 424 EKLSDHKKNQSKAGHDAPCEDPPSMEAAVPSENEKMTATQLSSPKALENESSYVASPSPS 483

Query: 433 SGLPDGSHHRR-GRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADF-----SLRKKP 486
             LPD SH R+ GR +K+   +NQ           S+ + E    SA       +  KK 
Sbjct: 484 RSLPDESHVRKVGRPRKK-DNLNQEVGKRRPGKRASSGITEEDKTSATMXDSVENPLKKS 542

Query: 487 EDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAI 546
             + DT       S   +E  +  G G    +AV+     EK +   ++K   + ++   
Sbjct: 543 GKKVDTSKNEDGSSLKPQEDRKKRGRG----KAVL-----EKEMTKFLSKDDEKEMLS-- 591

Query: 547 SAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEVWVCYIFIVV 605
                S  S GK  K           DE++ E+TPK   K KHTSGK +   C +++ V
Sbjct: 592 -----SPKSAGKSVK-----------DESHLEETPKMLSKGKHTSGKRK--SCQLWLKV 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548760|ref|XP_002515436.1| nucleic acid binding protein, putative [Ricinus communis] gi|223545380|gb|EEF46885.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 256/658 (38%), Positives = 356/658 (54%), Gaps = 85/658 (12%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELE+QL +AGN LLNPP  VDE++ LLD+VE+ L+ VEQ+P+ SM+ AL P+   L+ + 
Sbjct: 7   ELEQQLMEAGNKLLNPPPSVDELLPLLDQVENCLSKVEQSPTASMKSALSPSQNALVADP 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           L R SD+DV+++V SCISEITRITAPD+PYDD+ MK+ FQL VS+FENL+  S R Y K 
Sbjct: 67  LFRHSDIDVKVAVASCISEITRITAPDAPYDDDQMKDVFQLIVSSFENLADKSSRSYGKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
            SIL+TVAKVRSC++MLDLECD L++EMFQHFL  IR  HP  VF++METIMTLV++ESE
Sbjct: 127 TSILETVAKVRSCVVMLDLECDALIIEMFQHFLSAIRDCHPENVFSSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           ++S +LL  LLAS +K N++V P + KLGEKV   CAAK+K  L+ AV S  I+LDDY++
Sbjct: 187 EISPELLSPLLASAKKGNEEVLPVARKLGEKVLESCAAKVKPYLQHAVTSLCISLDDYSD 246

Query: 249 IVACICGSDDENPQHGHLIGSENQLATK-EPDPPCLGEVVHDVDGISKSVTSNGTAASRN 307
           IV  IC     + +       EN+   +  P+     +     D   KSV SNG A    
Sbjct: 247 IVGSICQEMSGSVEQNDHAADENKADVEIVPEADSFKQADPINDKSPKSVVSNGAAQVGE 306

Query: 308 EDSVVKD---KLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGR 364
           +DS+      K  +  +R +Q+  +  ++   +A PD  D  + V  E++PE A + RGR
Sbjct: 307 DDSLADSCSLKKKDDGDRANQL--TGGVETPSNAEPDKLDVEKAVIEESKPEQASKSRGR 364

Query: 365 KPNS---LMNPEEGYDHSWISSGRKI--AKVPGRRKSDDKGVDCSPSLNQDSKKEALNLT 419
           K NS   L  P E +        +K+  AK P       K V  SP   + S  EAL+L 
Sbjct: 365 KVNSSTKLAEPSESFQIGAEEEAQKLLDAKPPS------KDVPSSP-RQEASTDEALSLD 417

Query: 420 DKMLAD---PTSASLKSGL----PDGSHHRRGRTKKQGSTVNQNADHNSLSV---SLSTR 469
            K   D   P+S   + G      DGS     + + +G +++  +   S S+   SLS +
Sbjct: 418 IKQEIDSSQPSSPKAQEGEIKNEADGSQPSSPKAQ-EGESMSVASPSGSGSLPEESLSKK 476

Query: 470 VE---------ETASGSADFSLRKKPEDRSDTEIKHRKRSK-----------------TN 503
                      +    SA+   RK  E  SD+E K  KRS                  +N
Sbjct: 477 AGRLKRKDSLIKDLEPSAEDVPRKASEGTSDSETKPNKRSARKGPARISNEEKAPAGISN 536

Query: 504 EE-----ISQ----PPGYGVSEKEAVVPSADKEKPLQLSVTK------------------ 536
           EE     IS     P    VS+KE+      +EKPL+    K                  
Sbjct: 537 EEKAPARISNEERAPMATDVSQKESGPTDESEEKPLKQPSKKADSSSNNGDGSSLNQPED 596

Query: 537 KRRRSLVVAISAQNISEASG---GKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTS 591
           K++RS   + S + +S++S     K+K +S  +      D +  E+TPKT+ KRK  S
Sbjct: 597 KKQRSRGKSTSEKKLSKSSTKDYDKEKVSSPKSAAKSTKDLHLLEETPKTDTKRKRAS 654

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743633|emb|CBI36516.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 252/645 (39%), Positives = 346/645 (53%), Gaps = 77/645 (11%)

Query: 9   ELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITND 68
           ELEEQL  AG  LL P   V+E+++LLDK+E  LA VEQ+PS+SM+ A+ P MK L+  +
Sbjct: 7   ELEEQLVAAGEELLKPLPCVEELLSLLDKLESFLAKVEQSPSKSMQTAVCPAMKALVVKE 66

Query: 69  LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKA 128
           LL   D+DVR+ V SCISEITRITAPD+PYDD+ MKE F+L V+ FENLS  S R Y K 
Sbjct: 67  LLNHLDVDVRVVVASCISEITRITAPDAPYDDDQMKEIFELIVATFENLSDTSSRSYPKR 126

Query: 129 LSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE 188
           +SIL+TVAKVRSC++MLDLECD L+++MF+HFL  IR  H   V+++METIMTLV++ESE
Sbjct: 127 VSILETVAKVRSCVVMLDLECDSLIIKMFKHFLGTIRETHSDDVYSSMETIMTLVLEESE 186

Query: 189 DVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAE 248
           +VS +LL  LL S+R  NQDV   + KLG+KV   CA KL+  + +AV+  G  LD+Y E
Sbjct: 187 EVSPELLAPLLDSLRVGNQDVLLIARKLGKKVIQNCALKLRPYMMQAVEFMGFPLDNYYE 246

Query: 249 IVACICGSDDENPQHGHLIGSENQLATK--EPDPPCLGEVVHDVDGISKSVTSNGTAASR 306
           IVA IC    +  +H     S   +  K   PD  C G      +   K VTSNGT    
Sbjct: 247 IVASICQETSDAIKHNDANVSNECVDAKALAPDVSCSGGRDGTTNTSGKLVTSNGTVQIG 306

Query: 307 NEDSVVKDKLSNV-LERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRK 365
             DS+V     N  L +  Q+ +S+  DA   A P+ SD +   KSET+ +   ++RGRK
Sbjct: 307 ISDSLVNPVSPNKGLVQSHQINQSKGNDATIKAEPE-SDPVDVEKSETKSKQPTKRRGRK 365

Query: 366 PNSLMNPEEGYDHSWISSGRKIAKVPGRRK-----SDDKGVDCSPSLNQ---DSKKEALN 417
             S     E    S I SG++  ++ G +           VD S ++       +KE   
Sbjct: 366 SCSSTAKTETSGQSQIDSGKEALELLGPKSCVGEIGSSTSVDPSSNIADVPFQHEKETTQ 425

Query: 418 LTDK-----MLADPTSASLKSGLPDGSHHRRG--RTKKQGSTVNQNADHNSLSVSLSTRV 470
           +  +      + +P   SL  G PDGS  +R   RTKK+GS  N  AD  S SV +   +
Sbjct: 426 IPSQEAGKNEMPNPL-PSLSEGQPDGSASKRSQRRTKKKGSK-NLEADLISTSVPMGNLL 483

Query: 471 EETASG----SADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADK 526
           ++   G    S     +K+ E  SD+E K +KR+                K+A+V + D 
Sbjct: 484 QDQVEGEVPPSTTVLTKKEFERASDSETKRQKRTG---------------KKALVENNDD 528

Query: 527 EKPLQL---SVTKK--------RRRSLVVAISAQNISEAS----GGKKKK---------- 561
           EK   L   ++ KK        ++    V +   N  E S     GKK +          
Sbjct: 529 EKTSTLGDDAIMKKKESREKQPKKSGKKVGLGVANEDEVSRDDQDGKKNRGRGKSNLKKD 588

Query: 562 ------------TSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKE 594
                       ++K   KS N +E +  +TP+T+ KRK T GKE
Sbjct: 589 LNGELSIKEMFSSAKSNTKSQNKEEGHLLETPRTQSKRKRTPGKE 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467897|ref|XP_003604233.1| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula] gi|355505288|gb|AES86430.1| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula]

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/389 (47%), Positives = 254/389 (65%), Gaps = 21/389 (5%)

Query: 44  NVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELM 103
           N++Q P   ++++L+  MK LI+++LL+ +D DV++SVT+C++EI RITAP+ PYDDE M
Sbjct: 45  NLDQNPPEPIQESLVLPMKTLISDELLKHTDEDVKISVTACLTEIARITAPNDPYDDENM 104

Query: 104 KEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKV 163
           KEFF+L V+AFENLSH SGR Y KAL+IL+ ++K++  L+MLDLECD LV+EMFQ FL++
Sbjct: 105 KEFFKLTVAAFENLSHVSGRRYEKALTILEKISKIKIFLIMLDLECDDLVIEMFQQFLRI 164

Query: 164 IRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTK 223
           IRSNHP  V  +ME +MT ++DESED+S DLLR LL SVRKENQ +SP SW LGEKV T 
Sbjct: 165 IRSNHPSSVIESMEIVMTGILDESEDISSDLLRPLLDSVRKENQTISPISWTLGEKVITN 224

Query: 224 CAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIG---SENQLATKE--P 278
           CA KLK  L +AV+S G AL++YAE +  IC +  E+P+  H +     EN L   +  P
Sbjct: 225 CAVKLKPYLMKAVESSGRALNEYAETITSICHNKSESPERNHSMAVQDVENNLDIPKDAP 284

Query: 279 DPPC--------LGEVVHDVDGISKSVTSN--GTAASRNEDSVVKDKLSNVLERCSQVER 328
           + PC            V DV  I+    S+   T A+  +D V K   S           
Sbjct: 285 EEPCDVTTGVEMDNTCVRDVQ-ITDETKSDIRSTNAATVDDEVTKSSDSKRKLHSCPTTN 343

Query: 329 SQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWI---SSGR 385
           S+  +AK S+     +S + + S+T+ ++ PRKR RKPNSLMNPEEGY+HS++   SS R
Sbjct: 344 SERRNAKTSSETGNLESDQELNSKTQLDTVPRKRARKPNSLMNPEEGYNHSFVHKQSSTR 403

Query: 386 KIAKVPGRRKSDDKGVDCSPSLNQDSKKE 414
           K ++    +K+ D     SPS N  S+K+
Sbjct: 404 KSSQ--SNKKAHDNSYALSPSDNPSSRKD 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	609
TAIR|locus:2116787	873	AT4G31880 [Arabidopsis thalian	0.949	0.662	0.340	1.5e-74
TAIR|locus:2200557	990	AT1G15940 [Arabidopsis thalian	0.863	0.531	0.347	4.1e-68
TAIR|locus:2025712	774	AT1G80810 [Arabidopsis thalian	0.661	0.520	0.374	9e-61
TAIR|locus:2169058	1607	AT5G47690 [Arabidopsis thalian	0.367	0.139	0.441	5.7e-49
RGD|1307094	1333	Pds5a "PDS5, regulator of cohe	0.316	0.144	0.269	1.6e-13
UNIPROTKB|E2R7R4	1337	PDS5A "Uncharacterized protein	0.316	0.144	0.269	1.6e-13
UNIPROTKB|Q29RF7	1337	PDS5A "Sister chromatid cohesi	0.316	0.144	0.269	2.6e-13
UNIPROTKB|F1NIQ3	1330	PDS5A "Sister chromatid cohesi	0.316	0.145	0.263	8.3e-13
UNIPROTKB|Q5F3V3	1330	PDS5A "Sister chromatid cohesi	0.316	0.145	0.263	8.3e-13
UNIPROTKB|F1P3B8	1446	PDS5B "Sister chromatid cohesi	0.362	0.152	0.232	1.4e-12

TAIR|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 208/611 (34%), Positives = 319/611 (52%)

Query:     4 SKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKG 63
             S  + ELE Q+ +AG  L++PPS +DE+++ LDK+   LA VEQ+P  SM++AL P MKG
Sbjct:     2 SDSDKELENQIIEAGEKLIDPPSSLDELLSFLDKLFVSLAEVEQSPPDSMQNALTPLMKG 61

Query:    64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGR 123
             L+   L + SD+DV+++V +CISEITRITAPD+PYDD+ MKE F+L VS+FE+L   S R
Sbjct:    62 LVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSSR 121

Query:   124 YYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLV 183
              Y K +SIL+TVAKVRSC++MLDLECD L++EMFQHFLK IR +H   VF++ME IMTLV
Sbjct:   122 SYAKRISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIRDHHSGNVFSSMENIMTLV 181

Query:   184 IDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIAL 243
             ++ESED+  ++L  +L SV+K+++ +S  S +L E+V + CA+KLKT L EAV+S G+ L
Sbjct:   182 LEESEDIPSEMLSPILHSVKKDDE-ISQVSRRLAEQVLSNCASKLKTYLTEAVKSSGVPL 240

Query:   244 DDYAEIVACICGSDDENPQHGHLIGSENQLAT----KEPDPPCLGEVVH----DV--DGI 293
             D Y+ IVA IC       Q   ++ +E + +     +E +     E+      D   D  
Sbjct:   241 DKYSNIVASICEGTFSALQQDQVVANEKEDSQGHIKRETEVEKAAEISTPERTDAPKDES 300

Query:   294 SKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVK--- 350
              KS  SNG A  +N+ SV  D +    +  ++ E  Q  + + +   +T++   +V+   
Sbjct:   301 GKSGVSNGVA-QQNDSSVDTDSMKKQDDTGAKDEPQQLDNPRNTDLNNTTEEKPDVEHQI 359

Query:   351 SETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQD 410
              E E ES+  K+          EE      + S   +   P      D  V  + S   +
Sbjct:   360 EEKENESSSVKQADLSKDSDIKEETEPAELLDSKDVLTSPPV-----DSSVTAATSSENE 414

Query:   411 SKKEALNLTDKMLADPT----SASLKSGLPDGSHHRR-GRTKKQGSTVNQNADHNSLSVS 465
               K    L  K   D T    S S+   LP+ S  ++    KK+ S+  +     S++  
Sbjct:   415 KNKSVQILPSKTSGDETANVSSPSMAEELPEQSVPKKTANQKKKESSTEEVKPSASIATE 474

Query:   466 LSTRVEETASGSADFSLRKKPEDRSDTE--IKHRKRSKTNEEISQPPGYGVSEKEAVVPS 523
               +    T+         KK    S T+  +   K+S +  ++++      SEK+ V   
Sbjct:   475 EVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSETKVAKQ-----SEKKVVGSD 529

Query:   524 ADKEKPLQLSVTKKRRRSLVVAISAQNISEAXXXXXXXXXXXXXXXPNIDENYS-EDTPK 582
               +E        KK  R   +   + + S                    +   + E++P 
Sbjct:   530 NAQESTKPKEEKKKPGRGKAIDEESLHTSSGDNEKPAVSSGKLASKSKKEAKQTVEESPN 589

Query:   583 TEIKRKHTSGK 593
             +  KRK + G+
Sbjct:   590 SNTKRKRSLGQ 600

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2200557 AT1G15940 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 4.1e-68, P = 4.1e-68
 Identities = 192/553 (34%), Positives = 287/553 (51%)

Query:     7 EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT 66
             E   E+ L DA   LL P    D  ++LL+ +E LLA VEQ  S S++ AL P M+ L++
Sbjct:     9 EFSKEQALTDAAENLLKPHFSTDATLSLLEVMESLLATVEQDLSSSVQKALHPPMRALVS 68

Query:    67 NDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM 126
              DLLR  D DVR+SV SC++EI RITAP++PY+DE MK+ FQ+ + AFE L+ AS R Y 
Sbjct:    69 ADLLRNPDSDVRVSVVSCLTEIMRITAPEAPYNDEQMKDIFQVTIEAFEKLADASSRSYR 128

Query:   127 KALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186
             KA  IL+TVAKVRS L+MLDLECD LV+EMFQ FLK+IR +HP  V  +METIM  VIDE
Sbjct:   129 KAEVILETVAKVRSSLVMLDLECDDLVLEMFQRFLKIIRPDHPQLVLVSMETIMITVIDE 188

Query:   187 SEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDY 246
             SE+V  DLL ILL +V+K++QDVSP +  L EKV + C  KL+  + EA++S G +LD Y
Sbjct:   189 SEEVPMDLLEILLTTVKKDSQDVSPAALTLVEKVLSSCTCKLQPCIMEALKSSGTSLDMY 248

Query:   247 AEIVACICGSDDENPQ-HGHLIGSENQLATKEPDPPCLGEVVHD---VDGISKSVTSNGT 302
             + +V+ IC S+    Q H  +   +N+   K  +    G+VV      D ++  ++  GT
Sbjct:   249 SPVVSSICQSEFATTQAHNDVKPKDNEADEKISE----GQVVPSDSLEDKLNLGLSRKGT 304

Query:   303 AASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKR 362
              + R+     +    +     +    S+S DA+ ++G       +  KS   PE     +
Sbjct:   305 RSKRSARGGTRRANGDEKVITANEGLSESTDAETASGSTRKRGWKP-KSLMNPEEGYSFK 363

Query:   363 GRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLN----QDSKKEALNL 418
                   +   E G D S      K   +P +    ++ V  S S +      S+K +   
Sbjct:   364 TSSSKKVQEKELG-DSSLGKVAAKKVPLPSKVGQTNQSVVISLSSSGRARTGSRKRSRTK 422

Query:   419 TDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSA 478
              ++   D +S + +      +  +    K+  +  N     + +    S++ E+  +G A
Sbjct:   423 MEETDHDVSSVATQPAKKQ-TVKKTNPAKEDLTKSNVKKHEDGIKTGKSSKKEKADNGLA 481

Query:   479 DFSLRKKPEDR-----SDTEIKHRKRSKTNEE---ISQP-PGYGVSEKE---AVVPSADK 526
               S +K   +      S  ++ H    K N E   +  P P    S+K+   A  P+  K
Sbjct:   482 KTSAKKPLAETMMVKPSGKKLVHSDAKKKNSEGASMDTPIPQSSKSKKKDSRATTPATKK 541

Query:   527 EKPLQLSVTKKRR 539
              +    S  K +R
Sbjct:   542 SEQAPKSHPKMKR 554

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

TAIR|locus:2025712 AT1G80810 [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 161/430 (37%), Positives = 241/430 (56%)

Query:    53 MRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVS 112
             M+ AL+P+   L++ DLL   D DVR+SV SC++EI RITAP++PY D+LMKE F+L + 
Sbjct:     1 MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60

Query:   113 AFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFV 172
             AFE L+ AS R Y KA  +LD VAKV+SCL+MLDLEC  L+++MF++F K IRS+HP  V
Sbjct:    61 AFEKLADASSRSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIRSDHPQLV 120

Query:   173 FAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232
             F++ME IM  +IDE+E VS DLL  LLA+V+KENQ+VSP SW L EKV ++CA KLK  +
Sbjct:   121 FSSMELIMIAIIDETEQVSTDLLDSLLATVKKENQNVSPMSWSLAEKVLSRCARKLKPYI 180

Query:   233 KEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHD-VD 291
              EA++SRG +LD Y+ +V+ IC S    P+  H     + + TKE +     ++ H   +
Sbjct:   181 IEALKSRGTSLDMYSPVVSSICQSVFNTPKV-H-----SPVNTKEHEEKL--DLGHSRKE 232

Query:   292 GISKSVTS----NGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTS-DSL 346
              +SKS +     + T     ++ V     S++L++  +  RS+S DA+ +       +SL
Sbjct:   233 NLSKSSSKRPARHETRGINEKEKVRNGNKSSLLKQSLKQVRSESTDAEITGKRGRKPNSL 292

Query:   347 RNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRK---SDDKGVDC 403
              N + + +      KR     S     +      +SS   + KVP ++     ++     
Sbjct:   293 MNPE-DYDISWLSGKRDPLKTSSNKKIQKKGSGGVSS---LGKVPAKKTPLPKENSPATS 348

Query:   404 SPSLNQDSKKEALNLTDK-----MLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNAD 458
             S SL    K+  + + +       L+ P    L S   D   ++    +K G++  Q   
Sbjct:   349 SRSLTGSLKRSRVKMDESDYDSDSLSSPRLKKLASCFRDEEPNQED-DRKIGNSSKQTRS 407

Query:   459 HNSLSVSLST 468
              N L  S  T
Sbjct:   408 KNGLEKSQKT 417

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 5.7e-49, Sum P(3) = 5.7e-49
 Identities = 99/224 (44%), Positives = 148/224 (66%)

Query:    11 EEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLL 70
             EEQLK+ G+ L   P   D ++ LL +    L+ +EQ+P  ++  ++ P +  +I  ++L
Sbjct:     6 EEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVIKPEIL 65

Query:    71 RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALS 130
                D DV+L V SC+SEITRITAP++PY D +MK+ FQL VSAF  L+  SG  + + + 
Sbjct:    66 NHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSFGRRVL 125

Query:   131 ILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV 190
             IL+TVAK RSC++MLDLECD LV E+F  FL V R +HP  VF++M+ IM ++++ESEDV
Sbjct:   126 ILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLEESEDV 185

Query:   191 SWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKE 234
                LL ILL+ + +   DV   + +L  KV   CA K+++++K+
Sbjct:   186 QEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQ 229

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0007067 "mitosis" evidence=RCA

RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 53/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    38 DEMIKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 96

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    97 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 156

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   157 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 216

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  S+ L  KV  K
Sbjct:   217 KNLNKQSFDLA-KVLLK 232

GO:0000785 "chromatin" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007067 "mitosis" evidence=IEA

GO:0008156 "negative regulation of DNA replication" evidence=ISO;ISS

GO:0051301 "cell division" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 53/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    39 DEMIKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 97

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    98 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 157

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   158 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 217

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  S+ L  KV  K
Sbjct:   218 KNLNKQSFDLA-KVLLK 233

GO:0008156 "negative regulation of DNA replication" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
 Identities = 53/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DE+I  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    39 DEMIKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 97

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    98 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 157

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   158 EDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 217

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  S+ L  KV  K
Sbjct:   218 KNLNKQSFDLA-KVLLK 233

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008156 "negative regulation of DNA replication" evidence=IMP

GO:0000785 "chromatin" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1NIQ3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
 Identities = 52/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DEV+  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    33 DEVVKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 91

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    92 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 151

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   152 EDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 211

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  ++ L  KV  K
Sbjct:   212 KNLNKQAFDLA-KVLLK 227

GO:0000785 "chromatin" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008156 "negative regulation of DNA replication" evidence=IEA

UNIPROTKB|Q5F3V3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
 Identities = 52/197 (26%), Positives = 101/197 (51%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             DEV+  L  V     +++Q  S   +   LP    L +   LR  + DVRL V  C+++I
Sbjct:    33 DEVVKRLKMVVKTFMDMDQ-DSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADI 91

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    92 FRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFEL 151

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E C+++ +++F+    VI ++H   V   M  +M+ +I E + V+ +LL  +L ++   +
Sbjct:   152 EDCNEIFIQLFRTLFSVINNSHNQKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAH 211

Query:   207 QDVSPTSWKLGEKVFTK 223
             ++++  ++ L  KV  K
Sbjct:   212 KNLNKQAFDLA-KVLLK 227

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008156 "negative regulation of DNA replication" evidence=ISS

UNIPROTKB|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)]

 Score = 186 (70.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 53/228 (23%), Positives = 112/228 (49%)

Query:    29 DEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEI 88
             +E++  L  V     +++Q  S   ++  L     L ++  L+  D DVRL V  C+++I
Sbjct:    29 EEMVRRLKMVVKTFMDMDQ-DSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADI 87

Query:    89 TRITAPDSPYDD-ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147
              RI AP++PY   + +K+ F       + L       + +   +L+ +A V+S  +  +L
Sbjct:    88 FRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFEL 147

Query:   148 E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN 206
             E  +++  ++++    VI + H   V   M  +M+ +I E + VS +LL  +L ++   +
Sbjct:   148 EDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAH 207

Query:   207 QDVSPTSWKLGEKVFTKCAAKLK---TNLKEAVQSRG-IALDDYAEIV 250
             ++++  ++ L + +  + A  ++   TN    V   G  ++ D +E V
Sbjct:   208 KNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHV 255

GO:0000785 "chromatin" evidence=IEA

GO:0007064 "mitotic sister chromatid cohesion" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031506 hypothetical protein (901 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	609
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	100.0
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	99.74
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	89.77

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-51  Score=479.36  Aligned_cols=246  Identities=34%  Similarity=0.545  Sum_probs=234.3

Q ss_pred             HHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhc
Q 007277           13 QLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRIT   92 (609)
Q Consensus        13 ~l~~~G~kLis~pis~dELLkRLkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIy   92 (609)
                      +.-+-|++++.++++++|||+||++|+++|++++|++.+  .++|.|++.+|+++.||+|+|+|||+|||||++||||||
T Consensus         4 ~~~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~~~--~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~   81 (1266)
T KOG1525|consen    4 QFYPPGCLTSLNPISKDELLKRLKKLANCLASLDQDNLD--LASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIY   81 (1266)
T ss_pred             cccCCCCccccCcccHHHHHHHHHHHHHHHhhcccCchh--HHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHh
Confidence            445679999999999999999999999999999999966  999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhH
Q 007277           93 APDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFV  172 (609)
Q Consensus        93 APDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV  172 (609)
                      ||||||++.||+|||+||++||.||.|+.+|||.|||||||+||+||.|++|.|.+|++|+.+||++||+++|.+||.+|
T Consensus        82 aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v  161 (1266)
T KOG1525|consen   82 APEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKV  161 (1266)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999999999999999999999999999999999777777778999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHHhcC-------CC-Cc
Q 007277          173 FAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRG-------IA-LD  244 (609)
Q Consensus       173 ~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G-------~~-ld  244 (609)
                      +. |.+||+.+|.|.+.||.++|++||.+|+++++++.+.|++||..+|..|++.+.+.+++||++.-       +. ..
T Consensus       162 ~~-~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~  240 (1266)
T KOG1525|consen  162 FN-MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI  240 (1266)
T ss_pred             HH-HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence            99 99999999999999999999999999999999999999999999999999999999999999762       22 47


Q ss_pred             chHHHHHHHhccCCCCC
Q 007277          245 DYAEIVACICGSDDENP  261 (609)
Q Consensus       245 ~Y~~iv~sIcq~~s~~~  261 (609)
                      .||++|..+..+++..+
T Consensus       241 ~~he~i~~L~~~~p~ll  257 (1266)
T KOG1525|consen  241 KYHELILELWRIAPQLL  257 (1266)
T ss_pred             HHHHHHHHHHHhhHHHH
Confidence            89999999999988776

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=1.9e-17  Score=195.16  Aligned_cols=246  Identities=31%  Similarity=0.372  Sum_probs=231.6

Q ss_pred             HHHHhccccCCCCCC--HHHHHHHHHHH--------HHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhh
Q 007277           13 QLKDAGNLLLNPPSP--VDEVINLLDKV--------EHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVT   82 (609)
Q Consensus        13 ~l~~~G~kLis~pis--~dELLkRLkkL--------~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VA   82 (609)
                      +++.+|.+.+.++.+  .++||..+-+.        +-.|..+.|....++++++.+++..|+.=.+..|++-++.+-..
T Consensus       409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q  488 (1266)
T KOG1525|consen  409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ  488 (1266)
T ss_pred             HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence            677899999999999  99999999877        78888889988888999999999999999999999999999999


Q ss_pred             hHHhhhhh--hcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHH--HHHHhhhhhhheeecc---CCchHHHHH
Q 007277           83 SCISEITR--ITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALS--ILDTVAKVRSCLLMLD---LECDKLVVE  155 (609)
Q Consensus        83 cCLaDILR--IyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~y--LLEsLA~VKS~VLmlD---Le~ddLI~e  155 (609)
                      .||.+++|  |.+|..||+++.|+.||..|+..+..|.|+.+..|.....  +|+.++++++|+.|++   +.|.++...
T Consensus       489 ~~ls~~vr~~I~~~k~~~~d~~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~  568 (1266)
T KOG1525|consen  489 SRLSEEVRDYITLSKTPNTDDSMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLIT  568 (1266)
T ss_pred             HHHHHHHHHHhccccCCCccHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            99999999  9999999999999999999999999999998876655544  9999999999999999   459999999


Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHH
Q 007277          156 MFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEA  235 (609)
Q Consensus       156 LFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~  235 (609)
                      ||+.||..++..++.+++..|..+|++.|.+   |+.+++..|+..+...+......+..+++.|+..|+-++.+|+.+.
T Consensus       569 v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~---v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~  645 (1266)
T KOG1525|consen  569 VKEILFELGRKKQSKNLFSSMEKELIERIAE---VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEA  645 (1266)
T ss_pred             HHHHHHHHhhhccccchHHHHHHHHHHHhcc---hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHH
Confidence            9999999999999999999999999999999   9999999999999988888889999999999999999999999999


Q ss_pred             HHhcCCCCcchHHHHHHHhccCCCCC
Q 007277          236 VQSRGIALDDYAEIVACICGSDDENP  261 (609)
Q Consensus       236 l~s~G~~ld~Y~~iv~sIcq~~s~~~  261 (609)
                      |...|-.++-|++++.+||+...+..
T Consensus       646 ls~~~~~~~~~s~~v~~i~~~~~~~~  671 (1266)
T KOG1525|consen  646 LSSIHPDLFKYSESVLSILEKLFSEP  671 (1266)
T ss_pred             hhhcCcchhhhhHHHHHHHHHhccch
Confidence            99999999999999999999988777

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.77  E-value=3  Score=49.79  Aligned_cols=117  Identities=9%  Similarity=0.123  Sum_probs=75.1

Q ss_pred             CCCCCchhHHHHHHHHHhhhhhhheeeccCC---chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-CCHH
Q 007277          118 SHASGRYYMKALSILDTVAKVRSCLLMLDLE---CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-VSWD  193 (609)
Q Consensus       118 aD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe---~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~-Vp~e  193 (609)
                      .+|++|.|  ++||+|+++-+=  ...++-+   --.+...||=.|-.+.+++. .+...+...||+.+++-+.. +|..
T Consensus       603 KNPs~P~f--nHYLFEsi~~li--~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI-~EfiPYvfQlla~lve~~~~~ip~~  677 (960)
T KOG1992|consen  603 KNPSNPQF--NHYLFESIGLLI--RKTCKANPSAVSSLEEALFPVFQTILSEDI-QEFIPYVFQLLAVLVEHSSGTIPDS  677 (960)
T ss_pred             cCCCCchh--HHHHHHHHHHHH--HHHhccCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCchh
Confidence            45777776  578999997651  1122333   13567777755555555444 34557778899999998876 7776


Q ss_pred             HH---HHHHHHhhccCCCCCchHHHHHHHHHhhchhhHh-----HHHHHHHHhc
Q 007277          194 LL---RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLK-----TNLKEAVQSR  239 (609)
Q Consensus       194 VL---DvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~-----p~I~q~l~s~  239 (609)
                      ..   -+||+.-+..-+++.|+.-+|-...|...+..+.     .+|..+|+.+
T Consensus       678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkL  731 (960)
T KOG1992|consen  678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKL  731 (960)
T ss_pred             HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHH
Confidence            43   3344444445567789998898888887665543     4566677755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	609
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 5e-09
 Identities = 75/518 (14%), Positives = 139/518 (26%), Gaps = 157/518 (30%)

Query: 4   SKREIELEEQLKDAGNLLLNPPSPVDEV-INLLDKVEHLLANVEQAPSRSMRDALLPTMK 62
           S       EQ     + L N      +  ++ L     L   + +   R  ++ L+  + 
Sbjct: 106 SMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVL 159

Query: 63  G----LITNDLLRRSDMDVR-------LSVTSCISEITRITAPDSPYDDELMKEFFQLAV 111
           G     +  D+     +  +       L++ +C S  T +         E++++      
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---------EMLQKLLYQID 210

Query: 112 SAFENLSHASGRYYMK------ALSILDTVAKVRSCLLMLDLECDKLVVEMFQH------ 159
             + + S  S    ++       L  L       +CLL+L    +      F        
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 160 ---------FLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVS 210
                    FL    + H           MTL  DE + +    L      + +E    +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 211 PTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIV-ACICGSDDENPQHGHLIGS 269
           P    +        A  ++  L      + +  D    I+ + +                
Sbjct: 327 PRRLSI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSL---------------- 363

Query: 270 ENQLATKE-----------PDPPCLGEVVHDVDGISKSVTSNG-TAASRNEDSVVKDKLS 317
            N L   E           P              I   + S       +++  VV +KL 
Sbjct: 364 -NVLEPAEYRKMFDRLSVFPP---------SAH-IPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 318 N--VLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEP-------ESAPRKRGRKPNS 368
              ++E+    E + SI       P     L+ VK E E        +     +    + 
Sbjct: 413 KYSLVEK-QPKESTISI-------PSIYLELK-VKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 369 LM-NPEEGY--------------------------DHSWISSGRKIAKVPGRRKSDDKGV 401
           L+    + Y                          D  ++   +KI      R       
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKI------RHDSTAWN 515

Query: 402 DCSPSLN--QDSKKEALNLTDKMLADPTSASLKSGLPD 437
                LN  Q  K     + D    DP    L + + D
Sbjct: 516 ASGSILNTLQQLKFYKPYICDN---DPKYERLVNAILD 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	609
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	89.32
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	87.88
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	87.46
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	87.22
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	86.21
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	84.06
1qgr_A	876	Protein (importin beta subunit); transport recepto	83.16
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	80.73
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	80.69

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=89.32  E-value=3.7  Score=38.52  Aligned_cols=150  Identities=9%  Similarity=0.143  Sum_probs=88.2

Q ss_pred             HHHHHhhhhhhhc-cCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhh
Q 007277           58 LPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVA  136 (609)
Q Consensus        58 ~pl~k~LVs~~LL-kHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA  136 (609)
                      ..++..|.  .+| +.+|..||..++-||..|.+-..++  | ..++..|+..++..|   .|+...--......|.++.
T Consensus        55 ~~i~~~L~--~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~-~~~~~~ilp~ll~~l---~d~~~~vr~~a~~aL~~~~  126 (242)
T 2qk2_A           55 GALVSALK--KVITKDSNVVLVAMAGKCLALLAKGLAKR--F-SNYASACVPSLLEKF---KEKKPNVVTALREAIDAIY  126 (242)
T ss_dssp             HHHHHHHH--HHHHHCSCHHHHHHHHHHHHHHHHHHGGG--G-HHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHHhhh--H-HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHH
Confidence            34444443  245 4688889999999999999876652  2 345666666666655   4655444455566666665


Q ss_pred             hhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCCHHHHHHHHHHhhccCCCCCchHH
Q 007277          137 KVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVRKENQDVSPTSW  214 (609)
Q Consensus       137 ~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE--~Vp~eVLDvIL~~ll~~~k~~~PaA~  214 (609)
                      ..        +.    +..++..++...... ...|......+|..++....  .+....+..|+..+..--.+..+.-+
T Consensus       127 ~~--------~~----~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR  193 (242)
T 2qk2_A          127 AS--------TS----LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR  193 (242)
T ss_dssp             TT--------SC----HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             Hc--------CC----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHH
Confidence            42        12    234445556655654 34788888899999887753  34444555555444332233445555


Q ss_pred             HHHHHHHhhchhhH
Q 007277          215 KLGEKVFTKCAAKL  228 (609)
Q Consensus       215 ~LA~~VI~~ca~KL  228 (609)
                      .-|...+......+
T Consensus       194 ~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          194 DSSAEALGTLIKLM  207 (242)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            55555444444333

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=87.88  E-value=5.4  Score=43.33  Aligned_cols=163  Identities=10%  Similarity=0.097  Sum_probs=82.5

Q ss_pred             hccCCC--ccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhccc--------CCCC-CchhHHHHHHHHHhhh
Q 007277           69 LLRRSD--MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL--------SHAS-GRYYMKALSILDTVAK  137 (609)
Q Consensus        69 LLkHkD--kdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~L--------aD~s-sp~y~q~~yLLEsLA~  137 (609)
                      +|.+.|  ..||..++.+|..|.....++   ....+..++..++..|...        .+.+ .....-+..+++.|..
T Consensus       506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~  582 (861)
T 2bpt_A          506 AANRIDNEFNARASAFSALTTMVEYATDT---VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA  582 (861)
T ss_dssp             HHTCSCCGGGHHHHHHHHHHHHHHHCCGG---GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCcchHHHHHHHHHHHHHHHHcchh---hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence            456555  689999999999999875433   1233555555555555432        1111 1223233344444443


Q ss_pred             hhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC----CCCHHHHHHHHHHhhccCCCCCchH
Q 007277          138 VRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE----DVSWDLLRILLASVRKENQDVSPTS  213 (609)
Q Consensus       138 VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE----~Vp~eVLDvIL~~ll~~~k~~~PaA  213 (609)
                      +=..+   .-+....+..++..++...+...+..|.......+..++.-..    ..-..++..|+..+...+......|
T Consensus       583 l~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a  659 (861)
T 2bpt_A          583 VIRKS---PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA  659 (861)
T ss_dssp             HHHHC---GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHh---hhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            31111   0122345556666666666554331344333333333332221    1123466666666633333333445


Q ss_pred             HHHHHHHHhhchhhHhHHHHHHHH
Q 007277          214 WKLGEKVFTKCAAKLKTNLKEAVQ  237 (609)
Q Consensus       214 ~~LA~~VI~~ca~KL~p~I~q~l~  237 (609)
                      ..+...++..+...+.+|+..++.
T Consensus       660 ~~~l~~l~~~~~~~~~~~~~~l~~  683 (861)
T 2bpt_A          660 VGFIADISNSLEEDFRRYSDAMMN  683 (861)
T ss_dssp             HHHHHHHHHHTGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhccchHHHHHH
Confidence            555566777777777777666554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=87.46  E-value=6.6  Score=45.55  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=42.9

Q ss_pred             ccCCCccchhhhhhHHhhhhhhcCCC---CCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhh
Q 007277           70 LRRSDMDVRLSVTSCISEITRITAPD---SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV  138 (609)
Q Consensus        70 LkHkDkdVRa~VAcCLaDILRIyAPD---APYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~V  138 (609)
                      |.+.+..||..++-||..|.+.+.|+   ..+......+++.+++..|..     ++.+..+.+.|+.|.++
T Consensus        95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHH
Confidence            46777889999999999999998887   344445677777777776642     23344555556655554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=87.22  E-value=0.95  Score=51.19  Aligned_cols=146  Identities=13%  Similarity=0.096  Sum_probs=100.8

Q ss_pred             hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC
Q 007277           69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE  148 (609)
Q Consensus        69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe  148 (609)
                      -|...|-|||+.+|.||..|.         ..+++..|+..+-++|..|.| =+++=..-+-||..|-..... ...   
T Consensus       307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~~-a~~---  372 (800)
T 3oc3_A          307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENPE-LSI---  372 (800)
T ss_dssp             HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCTT-CCC---
T ss_pred             hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCcc-ccc---
Confidence            346679999999999999988         236689999999999999966 444445556666665554421 111   


Q ss_pred             chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhchhhH
Q 007277          149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKL  228 (609)
Q Consensus       149 ~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL  228 (609)
                      ...|+..||--|...     -..|+.+....|..++      -..++..|+++++=+..   ....+++.+|...-..=+
T Consensus       373 dp~LVPRL~PFLRHt-----ITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~n---eeIl~lS~~VWk~r~~Ll  438 (800)
T 3oc3_A          373 PPERLKDIFPCFTSP-----VPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEK---DEIREMAIKLLKKRRDLP  438 (800)
T ss_dssp             CSGGGGGTGGGGTCS-----SHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSC---HHHHHHHHHHHHTCSCCC
T ss_pred             ChHHHHHHHhhhcCC-----cHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHH
Confidence            126666666544332     3568887777776666      67899999999875443   356667777775111119


Q ss_pred             hHHHHHHHHhcCCC
Q 007277          229 KTNLKEAVQSRGIA  242 (609)
Q Consensus       229 ~p~I~q~l~s~G~~  242 (609)
                      ++.++.+.+-.|++
T Consensus       439 ~~wi~L~MtPIGv~  452 (800)
T 3oc3_A          439 KNLILHFMNVIGGS  452 (800)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHhcCcCCCc
Confidence            99999999988887

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=86.21  E-value=12  Score=43.40  Aligned_cols=134  Identities=10%  Similarity=0.074  Sum_probs=76.0

Q ss_pred             hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC
Q 007277           69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE  148 (609)
Q Consensus        69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe  148 (609)
                      .|.+.+..||..++.||..+...+.+      .++..|+..++..|   .|++..-   +......|+.+-.     ++.
T Consensus        56 ~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~v---R~~a~~~L~~i~~-----~l~  118 (1230)
T 1u6g_C           56 LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQL---RDISSIGLKTVIG-----ELP  118 (1230)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSHH---HHHHHHHHHHHHH-----HCC
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHh---cCCcHHH---HHHHHHHHHHHHH-----hCC
Confidence            35689999999999999999975422      56777777777664   4544332   3334444443322     222


Q ss_pred             --------chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-C-C--HHHHHHHHHHhhccCCCCCchHHHH
Q 007277          149 --------CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-V-S--WDLLRILLASVRKENQDVSPTSWKL  216 (609)
Q Consensus       149 --------~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~-V-p--~eVLDvIL~~ll~~~k~~~PaA~~L  216 (609)
                              ......+++..++..+.+.....+......++..+++.... + |  ..++..++..|.    ...+.-+..
T Consensus       119 ~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~----~~~~~vR~~  194 (1230)
T 1u6g_C          119 PASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT----SPRLAVRKR  194 (1230)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG----CSSHHHHHH
T ss_pred             CcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc----CCcHHHHHH
Confidence                    12345666666666665333456777777788888864322 2 2  344444444443    233444444


Q ss_pred             HHHHHhh
Q 007277          217 GEKVFTK  223 (609)
Q Consensus       217 A~~VI~~  223 (609)
                      |...|..
T Consensus       195 a~~al~~  201 (1230)
T 1u6g_C          195 TIIALGH  201 (1230)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=84.06  E-value=5.6  Score=44.22  Aligned_cols=159  Identities=9%  Similarity=0.173  Sum_probs=90.1

Q ss_pred             CCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCCchHH
Q 007277           73 SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKL  152 (609)
Q Consensus        73 kDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~ddL  152 (609)
                      .+......+.-||.-|.....+. -...+.+..++..++..+..|.|.+...+    .+++.++.+-..+-.   ..-..
T Consensus       495 ~~~~~~~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~~~~l~d~~~~~~----~~~~~l~~i~~~~g~---~~~~~  566 (852)
T 4fdd_A          495 YQHKNLLILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQKWNMLKDEDKDLF----PLLECLSSVATALQS---GFLPY  566 (852)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHHHHHSCTTCTTHH----HHHHHHHHHHHHHGG---GGHHH
T ss_pred             hChHHHHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHHHhH---hHHHH
Confidence            33444455667777776554332 12245677888888888888877554332    466666655332211   22233


Q ss_pred             HHHHHHHHHHHhhcC---------------C-chhHHHHHHHHHHHHhcccCC-C-----CHHHHHHHHHHhhccCCCCC
Q 007277          153 VVEMFQHFLKVIRSN---------------H-PHFVFAAMETIMTLVIDESED-V-----SWDLLRILLASVRKENQDVS  210 (609)
Q Consensus       153 I~eLFk~FF~iVr~~---------------h-p~kV~~~M~dILs~VIeEsE~-V-----p~eVLDvIL~~ll~~~k~~~  210 (609)
                      +..+|..++..++..               . ...+.....+.+..++...+. +     ...++..|+..+-.......
T Consensus       567 ~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr  646 (852)
T 4fdd_A          567 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR  646 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHH
Confidence            334444444333321               0 234555555666666554421 1     13567777777644443444


Q ss_pred             chHHHHHHHHHhhchhhHhHHHHHHHHhc
Q 007277          211 PTSWKLGEKVFTKCAAKLKTNLKEAVQSR  239 (609)
Q Consensus       211 PaA~~LA~~VI~~ca~KL~p~I~q~l~s~  239 (609)
                      -.|+.+-..++..|...+.+|+..++..+
T Consensus       647 ~~a~~~l~~l~~~~~~~~~~~l~~~lp~l  675 (852)
T 4fdd_A          647 QSSFALLGDLTKACFQHVKPCIADFMPIL  675 (852)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            56777778888899999999988877533

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=83.16  E-value=11  Score=40.97  Aligned_cols=26  Identities=15%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             hccCCCccchhhhhhHHhhhhhhcCC
Q 007277           69 LLRRSDMDVRLSVTSCISEITRITAP   94 (609)
Q Consensus        69 LLkHkDkdVRa~VAcCLaDILRIyAP   94 (609)
                      +|.+.+..||..++.||..+...+.+
T Consensus       416 ~l~d~~~~vr~~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          416 LMKDPSVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence            45777888999999999999888766

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=80.73  E-value=6  Score=43.95  Aligned_cols=53  Identities=13%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             HHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhc
Q 007277           58 LPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE  115 (609)
Q Consensus        58 ~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~  115 (609)
                      ..+...|..  ++.+.|.+||..++-||..|...+. +  +-...|..|+.+++..+.
T Consensus       214 ~~~l~~l~~--~~~d~~~~vr~~a~~~L~~l~~~~~-~--~~~~~l~~l~~~l~~~~~  266 (852)
T 4fdd_A          214 DSFIENLFA--LAGDEEPEVRKNVCRALVMLLEVRM-D--RLLPHMHNIVEYMLQRTQ  266 (852)
T ss_dssp             HHHHHHHHH--HHTCCCHHHHHHHHHHHHHHHHHCH-H--HHGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHhCH-H--HHHHHHHHHHHHHHHHcc
Confidence            344444443  5678899999999999999998742 1  112457788888887765

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=80.69  E-value=19  Score=39.09  Aligned_cols=155  Identities=6%  Similarity=0.018  Sum_probs=80.0

Q ss_pred             hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheeeccCC
Q 007277           69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE  148 (609)
Q Consensus        69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLmlDLe  148 (609)
                      +|.+.+..+|-.++.||..|.+-+.|+  .-...+..|+..++..   |.|++..--....+.|.+++..-.    -++.
T Consensus       377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~il~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~----~~~~  447 (861)
T 2bpt_A          377 NITADNWRNREAAVMAFGSIMDGPDKV--QRTYYVHQALPSILNL---MNDQSLQVKETTAWCIGRIADSVA----ESID  447 (861)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSCHH--HHHHHHHHHHHHHHHG---GGCSCHHHHHHHHHHHHHHHHHHG----GGSC
T ss_pred             HcCCCChhHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHhh----hhcC
Confidence            456788889999999999887543211  0013344444444444   455422222233445555554321    1232


Q ss_pred             chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCC---HHHHHHHHHHhhccC--CCCCchHHHHHH
Q 007277          149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVS---WDLLRILLASVRKEN--QDVSPTSWKLGE  218 (609)
Q Consensus       149 ~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE-----~Vp---~eVLDvIL~~ll~~~--k~~~PaA~~LA~  218 (609)
                      ....+..++..++....++  ..|.......+..+++...     .+.   ..++..|+..+...+  ....-.++....
T Consensus       448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            3345666666666666553  6677766666666665432     121   345555555544322  112223444445


Q ss_pred             HHHhhchhhHhHHHHH
Q 007277          219 KVFTKCAAKLKTNLKE  234 (609)
Q Consensus       219 ~VI~~ca~KL~p~I~q  234 (609)
                      .++..+...+.+|+.+
T Consensus       526 ~l~~~~~~~~~~~~~~  541 (861)
T 2bpt_A          526 TMVEYATDTVAETSAS  541 (861)
T ss_dssp             HHHHHCCGGGHHHHHH
T ss_pred             HHHHHcchhhHHHHHH
Confidence            5666666555555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	609
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	93.92
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	88.79
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	88.58
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	86.13
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	82.17
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	81.21

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.92  E-value=0.43  Score=47.66  Aligned_cols=178  Identities=10%  Similarity=0.114  Sum_probs=91.8

Q ss_pred             HHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCC-CchhH------
Q 007277           54 RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHAS-GRYYM------  126 (609)
Q Consensus        54 ~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~s-sp~y~------  126 (609)
                      ...+..+...|+......+.+..++..+..||..+.+....+.   ...+..++..+...|..+-... .....      
T Consensus       493 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~  569 (861)
T d2bpta1         493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV---AETSASISTFVMDKLGQTMSVDENQLTLEDAQSL  569 (861)
T ss_dssp             GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG---HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHH
T ss_pred             hHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence            3444555666665555566777888888899999988754331   1223333333333333221111 11111      


Q ss_pred             --HHHHHHHHhhhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC----CCHHHHHHHHH
Q 007277          127 --KALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED----VSWDLLRILLA  200 (609)
Q Consensus       127 --q~~yLLEsLA~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~----Vp~eVLDvIL~  200 (609)
                        -...++..++.+   +-.+.-....++..+|..|+..........+...+...+..++.-...    .=..++..|+.
T Consensus       570 ~~l~~~~~~~l~~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~  646 (861)
T d2bpta1         570 QELQSNILTVLAAV---IRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLK  646 (861)
T ss_dssp             HHHHHHHHHHHHHH---HHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence              111122222221   111122244566777777777776666655555554444444443221    11345555555


Q ss_pred             HhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHH
Q 007277          201 SVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQ  237 (609)
Q Consensus       201 ~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~  237 (609)
                      .+-..+......|..+...++..+...+.||+.++++
T Consensus       647 ~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~  683 (861)
T d2bpta1         647 ALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN  683 (861)
T ss_dssp             HHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHH
Confidence            5544444344456666667778888888888766555

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=1.8  Score=45.28  Aligned_cols=182  Identities=9%  Similarity=0.175  Sum_probs=100.3

Q ss_pred             HHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhh
Q 007277           58 LPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK  137 (609)
Q Consensus        58 ~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~  137 (609)
                      ..+...|+.  .|...+.+++..+..||.-+..-..+.. ....-+..+...++..+..+.+.+.    ..+.+|+.++.
T Consensus       518 ~~il~~l~~--~l~~~~~~~~~~~~~al~~l~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~le~l~~  590 (888)
T d1qbkb_         518 AYILDTLVF--AFSKYQHKNLLILYDAIGTLADSVGHHL-NKPEYIQMLMPPLIQKWNMLKDEDK----DLFPLLECLSS  590 (888)
T ss_dssp             HHHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHGGGG-CSHHHHHHHHHHHHHHHTTSCTTCT----THHHHHHHHHH
T ss_pred             HHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHhhhccc-cchHHHHHHHHHHHHHHHhcccchH----HHHHHHHHHHH
Confidence            344444432  3455566677777777776665544432 1234455566677777777776543    34577888877


Q ss_pred             hhhheeeccCCchHHHHHHHHHHHHHhhc---------------C-CchhHHHHHHHHHHHHhcccCCCCH------HHH
Q 007277          138 VRSCLLMLDLECDKLVVEMFQHFLKVIRS---------------N-HPHFVFAAMETIMTLVIDESEDVSW------DLL  195 (609)
Q Consensus       138 VKS~VLmlDLe~ddLI~eLFk~FF~iVr~---------------~-hp~kV~~~M~dILs~VIeEsE~Vp~------eVL  195 (609)
                      +-...-   -........+|+.++.++..               . ....+.....++|..+++-...--.      .++
T Consensus       591 i~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~  667 (888)
T d1qbkb_         591 VATALQ---SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL  667 (888)
T ss_dssp             HHHHST---TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHH
T ss_pred             HHHHhH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            643321   11222333333333332221               1 1234555566777777654432111      245


Q ss_pred             HHHHHHhhccCCCCCchHHHHHHHHHhhchhhHhHHHHHHHHhcCCCC-cchHHH
Q 007277          196 RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIAL-DDYAEI  249 (609)
Q Consensus       196 DvIL~~ll~~~k~~~PaA~~LA~~VI~~ca~KL~p~I~q~l~s~G~~l-d~Y~~i  249 (609)
                      ..++..+..........|+.+..+++..|...+.||+..++.-+...+ +++..+
T Consensus       668 ~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v  722 (888)
T d1qbkb_         668 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV  722 (888)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHH
Confidence            556665554444445567777778999999999999988887553333 344443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.58  E-value=0.93  Score=45.18  Aligned_cols=157  Identities=11%  Similarity=0.121  Sum_probs=83.4

Q ss_pred             hccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCchhH-HHHHHHHHhhhhhhheeeccC
Q 007277           69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM-KALSILDTVAKVRSCLLMLDL  147 (609)
Q Consensus        69 LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf~~LaD~ssp~y~-q~~yLLEsLA~VKS~VLmlDL  147 (609)
                      .|.+.+..||-.+|.||+.|.|+.-|+.-|.     ++|..++..+   ...++.... -.+.+|..+.+.-.    ..+
T Consensus       103 ~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp-----eli~~L~~~~---~s~~~~~~~~~al~~l~~i~e~~~----~~~  170 (861)
T d2bpta1         103 ALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNT---GAEQPENVKRASLLALGYMCESAD----PQS  170 (861)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHT---STTSCHHHHHHHHHHHHHHHHTSS----TTS
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhCCcCchH-----HHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHHHhh----HHH
Confidence            3467899999999999999999988865443     4555554443   222222211 12344443322100    001


Q ss_pred             C-chHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhcccCC--CCHH----HHHHHHHHhhccCCCCCchHHHHHHH
Q 007277          148 E-CDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDESED--VSWD----LLRILLASVRKENQDVSPTSWKLGEK  219 (609)
Q Consensus       148 e-~ddLI~eLFk~FF~iVr-~~hp~kV~~~M~dILs~VIeEsE~--Vp~e----VLDvIL~~ll~~~k~~~PaA~~LA~~  219 (609)
                      + --.-+..++..+|.... .+....|.......+..++.-...  ....    ++.+|+..+..++......++.....
T Consensus       171 ~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  250 (861)
T d2bpta1         171 QALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCK  250 (861)
T ss_dssp             STTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence            1 11223334444444333 334456666666666666554321  2222    34444444433333333456666677


Q ss_pred             HHhhchhhHhHHHHHHHH
Q 007277          220 VFTKCAAKLKTNLKEAVQ  237 (609)
Q Consensus       220 VI~~ca~KL~p~I~q~l~  237 (609)
                      ++..+...+.+++.+.+.
T Consensus       251 i~~~~~~~~~~~l~~~l~  268 (861)
T d2bpta1         251 IMSKYYTFMKPYMEQALY  268 (861)
T ss_dssp             HHHHHGGGCHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            788888888888766554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=7.1  Score=41.27  Aligned_cols=175  Identities=10%  Similarity=0.073  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCccchhhhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHh
Q 007277           35 LDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAF  114 (609)
Q Consensus        35 LkkL~~eLs~ldQ~~~ds~~~SL~pl~k~LVs~~LLkHkDkdVRa~VAcCLaDILRIyAPDAPYtDdqLKDIF~LfI~qf  114 (609)
                      ...+.+.+..+.++...-..+....+...|..  +|..++.+||..++-||..+..-.      ...++..|...++..+
T Consensus        21 ~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~~------~~~~~~~l~~~L~~~l   92 (1207)
T d1u6gc_          21 FMATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKV------KEYQVETIVDTLCTNM   92 (1207)
T ss_dssp             HHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcccccChHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHhC------cHhhHHHHHHHHHHHh
Confidence            44444444445443321112334456666655  788899999999999999886541      2456666666665554


Q ss_pred             cccCCCCCchhHHHHHHHHHh-hhhhhheeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHH
Q 007277          115 ENLSHASGRYYMKALSILDTV-AKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWD  193 (609)
Q Consensus       115 ~~LaD~ssp~y~q~~yLLEsL-A~VKS~VLmlDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~e  193 (609)
                         .+.+...-.-+...|.++ +.+-.......+ ...++..+...+.+.+...-...+.....+|+..++.-....-..
T Consensus        93 ---~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~  168 (1207)
T d1u6gc_          93 ---LSDKEQLRDISSIGLKTVIGELPPASSGSAL-AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN  168 (1207)
T ss_dssp             ---TCSSSHHHHHHHHHHHHHHHHCC-----CCT-HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred             ---cCCchhhhHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH
Confidence               233222222223333332 111100000000 234555566666666555555567777778888888876554333


Q ss_pred             HHHHHHHHhhccCCCCCchHHHHHHHHH
Q 007277          194 LLRILLASVRKENQDVSPTSWKLGEKVF  221 (609)
Q Consensus       194 VLDvIL~~ll~~~k~~~PaA~~LA~~VI  221 (609)
                      ....|+..|+..-.+..+.-++-|...+
T Consensus       169 ~~~~il~~l~~~l~~~~~~vR~~A~~~l  196 (1207)
T d1u6gc_         169 FHPSILTCLLPQLTSPRLAVRKRTIIAL  196 (1207)
T ss_dssp             THHHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445555554443444445444444433

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.17  E-value=15  Score=38.69  Aligned_cols=162  Identities=7%  Similarity=0.116  Sum_probs=90.7

Q ss_pred             hhhhccCCCccchhhhhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCchhHHHHHHHHHhhhhhhheee
Q 007277           66 TNDLLRRSDMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLM  144 (609)
Q Consensus        66 s~~LLkHkDkdVRa~VAcCLaDILRIyAPD-APYtDdqLKDIF~LfI~qf~~LaD~ssp~y~q~~yLLEsLA~VKS~VLm  144 (609)
                      ...+.+..+..||..+.-+|.++++-+.+. .||    ...|+..++   ..|.++...--.+....|..|+..=+    
T Consensus       136 ~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~----~~~il~~l~---~~l~~~~~~vR~~A~~~l~~l~~~~~----  204 (1207)
T d1u6gc_         136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF----HPSILTCLL---PQLTSPRLAVRKRTIIALGHLVMSCG----  204 (1207)
T ss_dssp             HHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT----HHHHHHHHG---GGGGCSSHHHHHHHHHHHHHHTTTC-----
T ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH----HHHHHHHHH---HHhCCCCHHHHHHHHHHHHHHHHHCC----
Confidence            345567788889998888999999987654 344    334444443   44555554444444555555543211    


Q ss_pred             ccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCchHHHHHHHHHhhc
Q 007277          145 LDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC  224 (609)
Q Consensus       145 lDLe~ddLI~eLFk~FF~iVr~~hp~kV~~~M~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~PaA~~LA~~VI~~c  224 (609)
                       +--...++..+++.+..-...........++..|+...=.....-=..++..|+..+...+......+...-..++..|
T Consensus       205 -~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         205 -NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  283 (1207)
T ss_dssp             ----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             -HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhC
Confidence             1112345555555544322222223344444444332212222222457777777776665555556666667788888


Q ss_pred             hhhHhHHHHHHHHhc
Q 007277          225 AAKLKTNLKEAVQSR  239 (609)
Q Consensus       225 a~KL~p~I~q~l~s~  239 (609)
                      ...+.+|+.+.+...
T Consensus       284 ~~~~~~~~~~ii~~~  298 (1207)
T d1u6gc_         284 PKEVYPHVSTIINIC  298 (1207)
T ss_dssp             TCCCHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHH
Confidence            888888887777654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.21  E-value=3.9  Score=42.53  Aligned_cols=156  Identities=12%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             hhhhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcc------cCC-CCCchhHHHHHHHHHhhhhhhheeeccCCch
Q 007277           79 LSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFEN------LSH-ASGRYYMKALSILDTVAKVRSCLLMLDLECD  150 (609)
Q Consensus        79 a~VAcCLaDILRIyAPD-APYtDdqLKDIF~LfI~qf~~------LaD-~ssp~y~q~~yLLEsLA~VKS~VLmlDLe~d  150 (609)
                      ..+.-||+.|.+.+... .||....+..++.++...+..      ..+ ...+...-..++|..++.+   +-.+.-...
T Consensus       582 ~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l---~~~l~~~~~  658 (888)
T d1qbkb_         582 FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGL---AEGLGGNIE  658 (888)
T ss_dssp             HHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHH---HHHHTTTTH
T ss_pred             HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---HHHhhhhhh
Confidence            34567999999988777 677666666666655544321      111 1222222233344433322   111111122


Q ss_pred             HHHH--HHHHHHHHHhhcCCchhHHHHH----HHHHHHHhcccCCCCHHHHHHHHHHhhccCCCCCc-hHHHHHHHHHhh
Q 007277          151 KLVV--EMFQHFLKVIRSNHPHFVFAAM----ETIMTLVIDESEDVSWDLLRILLASVRKENQDVSP-TSWKLGEKVFTK  223 (609)
Q Consensus       151 dLI~--eLFk~FF~iVr~~hp~kV~~~M----~dILs~VIeEsE~Vp~eVLDvIL~~ll~~~k~~~P-aA~~LA~~VI~~  223 (609)
                      +++.  .++..++....+. ...|....    .+|...+-......-..++..|+..+..+..+... ++|.++ +++..
T Consensus       659 ~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig-~ia~~  736 (888)
T d1qbkb_         659 QLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIG-EISIQ  736 (888)
T ss_dssp             HHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHH-HHHHH
T ss_pred             hhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HHHHH
Confidence            3332  1344444444332 23344333    33333333333222234555555555433322222 333333 56667


Q ss_pred             chhhHhHHHHHHHHhc
Q 007277          224 CAAKLKTNLKEAVQSR  239 (609)
Q Consensus       224 ca~KL~p~I~q~l~s~  239 (609)
                      ....++||+..++..+
T Consensus       737 ~~~~~~py~~~il~~L  752 (888)
T d1qbkb_         737 MGIEMQPYIPMVLHQL  752 (888)
T ss_dssp             TGGGGGGGSHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHH
Confidence            7788898887777644